Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27222.t1 | P46278.1 | 98.8 | 434 | 4 | 1 | 1 | 433 | 1 | 434 | 8.10E-229 | 802.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27222.t1 | P46278 | 98.8 | 434 | 4 | 1 | 1 | 433 | 1 | 434 | 2.0e-231 | 802.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27222.t1 | G7L9H0 | 98.8 | 434 | 4 | 1 | 1 | 433 | 1 | 434 | 1.0e-228 | 802.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050297 | MS.gene27222 | 0.842821 | 2.05E-58 | -1.69E-46 |
| MS.gene050310 | MS.gene27222 | 0.830836 | 2.35E-55 | -1.69E-46 |
| MS.gene050648 | MS.gene27222 | 0.816973 | 4.19E-52 | -1.69E-46 |
| MS.gene050901 | MS.gene27222 | 0.830938 | 2.22E-55 | -1.69E-46 |
| MS.gene051478 | MS.gene27222 | 0.828296 | 9.73E-55 | -1.69E-46 |
| MS.gene051671 | MS.gene27222 | 0.827246 | 1.74E-54 | -1.69E-46 |
| MS.gene051720 | MS.gene27222 | 0.803042 | 4.21E-49 | -1.69E-46 |
| MS.gene052732 | MS.gene27222 | 0.818862 | 1.57E-52 | -1.69E-46 |
| MS.gene053144 | MS.gene27222 | 0.822511 | 2.28E-53 | -1.69E-46 |
| MS.gene053171 | MS.gene27222 | 0.827206 | 1.78E-54 | -1.69E-46 |
| MS.gene053581 | MS.gene27222 | 0.820699 | 5.97E-53 | -1.69E-46 |
| MS.gene054554 | MS.gene27222 | 0.81801 | 2.45E-52 | -1.69E-46 |
| MS.gene054584 | MS.gene27222 | 0.815631 | 8.37E-52 | -1.69E-46 |
| MS.gene054643 | MS.gene27222 | 0.811729 | 6.05E-51 | -1.69E-46 |
| MS.gene055537 | MS.gene27222 | 0.829313 | 5.52E-55 | -1.69E-46 |
| MS.gene055764 | MS.gene27222 | 0.821362 | 4.20E-53 | -1.69E-46 |
| MS.gene057004 | MS.gene27222 | 0.810298 | 1.24E-50 | -1.69E-46 |
| MS.gene05870 | MS.gene27222 | 0.809404 | 1.92E-50 | -1.69E-46 |
| MS.gene059300 | MS.gene27222 | 0.828912 | 6.91E-55 | -1.69E-46 |
| MS.gene059424 | MS.gene27222 | 0.80054 | 1.37E-48 | -1.69E-46 |
| MS.gene06057 | MS.gene27222 | 0.833693 | 4.61E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene27222 | MS.gene68361 | PPI |
| MS.gene27222 | MS.gene64859 | PPI |
| MS.gene67555 | MS.gene27222 | PPI |
| MS.gene65301 | MS.gene27222 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27222.t1 | MTR_8g074000 | 98.848 | 434 | 4 | 1 | 1 | 433 | 1 | 434 | 0.0 | 897 |
| MS.gene27222.t1 | MTR_5g023790 | 73.086 | 431 | 103 | 5 | 6 | 431 | 6 | 428 | 0.0 | 639 |
| MS.gene27222.t1 | MTR_5g023790 | 72.656 | 384 | 92 | 5 | 6 | 384 | 6 | 381 | 0.0 | 558 |
| MS.gene27222.t1 | MTR_5g023790 | 70.462 | 325 | 83 | 5 | 6 | 325 | 6 | 322 | 2.94e-158 | 451 |
| MS.gene27222.t1 | MTR_7g089080 | 47.101 | 276 | 139 | 2 | 158 | 427 | 182 | 456 | 3.29e-77 | 261 |
| MS.gene27222.t1 | MTR_5g088980 | 43.223 | 273 | 152 | 3 | 153 | 423 | 143 | 414 | 6.78e-75 | 240 |
| MS.gene27222.t1 | MTR_1g011470 | 39.209 | 278 | 155 | 6 | 155 | 422 | 142 | 415 | 2.57e-57 | 194 |
| MS.gene27222.t1 | MTR_3g107970 | 39.608 | 255 | 147 | 3 | 175 | 422 | 213 | 467 | 3.30e-55 | 190 |
| MS.gene27222.t1 | MTR_3g088415 | 35.789 | 285 | 171 | 6 | 148 | 423 | 216 | 497 | 2.09e-53 | 186 |
| MS.gene27222.t1 | MTR_3g088405 | 38.430 | 242 | 132 | 6 | 196 | 423 | 264 | 502 | 3.93e-51 | 180 |
| MS.gene27222.t1 | MTR_2g102550 | 38.057 | 247 | 146 | 3 | 175 | 414 | 167 | 413 | 1.35e-48 | 171 |
| MS.gene27222.t1 | MTR_2g102520 | 40.343 | 233 | 131 | 4 | 158 | 383 | 199 | 430 | 8.67e-48 | 171 |
| MS.gene27222.t1 | MTR_1g018680 | 35.178 | 253 | 155 | 4 | 175 | 418 | 91 | 343 | 9.05e-47 | 165 |
| MS.gene27222.t1 | MTR_3g088415 | 39.035 | 228 | 129 | 5 | 148 | 368 | 216 | 440 | 1.28e-46 | 166 |
| MS.gene27222.t1 | MTR_3g102510 | 34.263 | 251 | 158 | 3 | 175 | 418 | 74 | 324 | 6.58e-45 | 159 |
| MS.gene27222.t1 | MTR_3g102520 | 33.333 | 261 | 165 | 4 | 167 | 418 | 83 | 343 | 1.92e-43 | 156 |
| MS.gene27222.t1 | MTR_3g102530 | 30.383 | 339 | 208 | 8 | 98 | 418 | 8 | 336 | 1.83e-41 | 150 |
| MS.gene27222.t1 | MTR_3g060770 | 39.623 | 212 | 121 | 3 | 207 | 411 | 60 | 271 | 1.50e-39 | 144 |
| MS.gene27222.t1 | MTR_3g102560 | 34.746 | 236 | 140 | 4 | 176 | 402 | 65 | 295 | 2.48e-39 | 144 |
| MS.gene27222.t1 | MTR_3g060410 | 37.500 | 232 | 131 | 5 | 201 | 424 | 129 | 354 | 6.41e-38 | 141 |
| MS.gene27222.t1 | MTR_3g061680 | 37.089 | 213 | 127 | 3 | 206 | 411 | 49 | 261 | 5.18e-37 | 137 |
| MS.gene27222.t1 | MTR_3g088415 | 40.000 | 175 | 101 | 3 | 148 | 321 | 216 | 387 | 1.42e-36 | 138 |
| MS.gene27222.t1 | MTR_3g060820 | 38.318 | 214 | 123 | 5 | 206 | 411 | 49 | 261 | 7.32e-36 | 133 |
| MS.gene27222.t1 | MTR_3g060400 | 37.788 | 217 | 126 | 5 | 203 | 411 | 52 | 267 | 1.53e-35 | 133 |
| MS.gene27222.t1 | MTR_3g460990 | 37.788 | 217 | 126 | 5 | 203 | 411 | 52 | 267 | 1.53e-35 | 133 |
| MS.gene27222.t1 | MTR_3g102540 | 32.287 | 223 | 137 | 4 | 203 | 418 | 40 | 255 | 6.42e-35 | 131 |
| MS.gene27222.t1 | MTR_6g045270 | 36.607 | 224 | 122 | 7 | 208 | 424 | 75 | 285 | 1.24e-32 | 126 |
| MS.gene27222.t1 | MTR_5g011900 | 33.333 | 186 | 117 | 3 | 160 | 340 | 56 | 239 | 1.66e-22 | 96.3 |
| MS.gene27222.t1 | MTR_5g044040 | 46.753 | 77 | 41 | 0 | 229 | 305 | 7 | 83 | 1.52e-17 | 79.0 |
| MS.gene27222.t1 | MTR_1g032850 | 32.967 | 182 | 118 | 3 | 208 | 386 | 372 | 552 | 1.23e-16 | 82.4 |
| MS.gene27222.t1 | MTR_5g015670 | 28.395 | 162 | 104 | 5 | 204 | 358 | 101 | 257 | 5.03e-14 | 73.6 |
| MS.gene27222.t1 | MTR_2g005960 | 33.898 | 118 | 64 | 3 | 165 | 268 | 112 | 229 | 1.29e-13 | 70.5 |
| MS.gene27222.t1 | MTR_3g103080 | 31.092 | 119 | 79 | 1 | 202 | 317 | 61 | 179 | 5.87e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27222.t1 | AT1G20610 | 55.711 | 429 | 181 | 5 | 5 | 427 | 4 | 429 | 1.24e-167 | 478 |
| MS.gene27222.t1 | AT1G76310 | 56.552 | 435 | 169 | 9 | 5 | 427 | 4 | 430 | 1.22e-164 | 470 |
| MS.gene27222.t1 | AT1G76310 | 53.132 | 463 | 169 | 10 | 5 | 427 | 4 | 458 | 6.28e-158 | 454 |
| MS.gene27222.t1 | AT2G17620 | 59.259 | 405 | 149 | 7 | 29 | 427 | 29 | 423 | 7.16e-157 | 450 |
| MS.gene27222.t1 | AT4G35620 | 57.240 | 442 | 161 | 10 | 1 | 429 | 1 | 427 | 2.85e-150 | 434 |
| MS.gene27222.t1 | AT1G76310 | 55.357 | 392 | 155 | 9 | 5 | 384 | 4 | 387 | 1.93e-140 | 407 |
| MS.gene27222.t1 | AT4G35620 | 57.071 | 396 | 143 | 9 | 1 | 384 | 1 | 381 | 1.34e-131 | 384 |
| MS.gene27222.t1 | AT1G76310 | 54.955 | 333 | 130 | 9 | 5 | 325 | 4 | 328 | 2.19e-110 | 328 |
| MS.gene27222.t1 | AT3G11520 | 40.054 | 367 | 203 | 4 | 78 | 429 | 48 | 412 | 2.23e-85 | 267 |
| MS.gene27222.t1 | AT5G06150 | 37.076 | 383 | 202 | 5 | 78 | 427 | 57 | 433 | 1.75e-84 | 266 |
| MS.gene27222.t1 | AT1G20590 | 68.023 | 172 | 55 | 0 | 233 | 404 | 63 | 234 | 6.37e-84 | 258 |
| MS.gene27222.t1 | AT2G26760 | 45.525 | 257 | 137 | 3 | 156 | 410 | 111 | 366 | 3.46e-77 | 245 |
| MS.gene27222.t1 | AT4G37490 | 44.718 | 284 | 150 | 4 | 150 | 427 | 140 | 422 | 2.47e-76 | 244 |
| MS.gene27222.t1 | AT3G11520 | 39.634 | 328 | 181 | 4 | 78 | 390 | 48 | 373 | 4.43e-74 | 237 |
| MS.gene27222.t1 | AT1G16330 | 43.728 | 279 | 155 | 1 | 144 | 422 | 366 | 642 | 2.66e-73 | 242 |
| MS.gene27222.t1 | AT1G77390 | 39.033 | 269 | 156 | 4 | 158 | 419 | 162 | 429 | 6.08e-57 | 194 |
| MS.gene27222.t1 | AT5G25380 | 41.202 | 233 | 130 | 3 | 193 | 418 | 191 | 423 | 6.28e-57 | 194 |
| MS.gene27222.t1 | AT5G25380 | 41.202 | 233 | 130 | 3 | 193 | 418 | 191 | 423 | 6.28e-57 | 194 |
| MS.gene27222.t1 | AT5G25380 | 41.202 | 233 | 130 | 3 | 193 | 418 | 197 | 429 | 6.84e-57 | 194 |
| MS.gene27222.t1 | AT5G25380 | 41.228 | 228 | 127 | 3 | 193 | 413 | 191 | 418 | 4.98e-56 | 191 |
| MS.gene27222.t1 | AT5G11300 | 43.363 | 226 | 122 | 2 | 200 | 419 | 198 | 423 | 4.54e-55 | 189 |
| MS.gene27222.t1 | AT1G44110 | 37.410 | 278 | 166 | 4 | 149 | 419 | 169 | 445 | 1.08e-54 | 188 |
| MS.gene27222.t1 | AT5G06150 | 36.806 | 288 | 141 | 6 | 78 | 332 | 57 | 336 | 2.44e-54 | 184 |
| MS.gene27222.t1 | AT1G47210 | 37.329 | 292 | 171 | 6 | 136 | 418 | 66 | 354 | 4.21e-54 | 184 |
| MS.gene27222.t1 | AT5G43080 | 37.398 | 246 | 152 | 2 | 175 | 418 | 87 | 332 | 9.28e-54 | 183 |
| MS.gene27222.t1 | AT1G15570 | 38.433 | 268 | 157 | 4 | 158 | 418 | 172 | 438 | 5.46e-52 | 181 |
| MS.gene27222.t1 | AT5G43080 | 36.653 | 251 | 152 | 3 | 175 | 418 | 87 | 337 | 1.37e-51 | 177 |
| MS.gene27222.t1 | AT1G80370 | 35.714 | 322 | 181 | 7 | 105 | 418 | 144 | 447 | 3.37e-51 | 179 |
| MS.gene27222.t1 | AT1G47220 | 35.548 | 301 | 173 | 7 | 138 | 418 | 9 | 308 | 8.24e-50 | 172 |
| MS.gene27222.t1 | AT1G47230 | 36.863 | 255 | 148 | 5 | 175 | 418 | 95 | 347 | 3.27e-49 | 171 |
| MS.gene27222.t1 | AT5G11300 | 48.045 | 179 | 87 | 2 | 200 | 372 | 198 | 376 | 6.33e-49 | 172 |
| MS.gene27222.t1 | AT1G47230 | 36.719 | 256 | 148 | 6 | 175 | 418 | 95 | 348 | 1.57e-47 | 167 |
| MS.gene27222.t1 | AT1G34460 | 32.450 | 302 | 142 | 9 | 35 | 322 | 142 | 395 | 4.26e-38 | 144 |
| MS.gene27222.t1 | AT1G34460 | 32.450 | 302 | 142 | 9 | 35 | 322 | 142 | 395 | 4.26e-38 | 144 |
| MS.gene27222.t1 | AT1G34460 | 32.131 | 305 | 142 | 9 | 35 | 322 | 128 | 384 | 1.36e-37 | 142 |
| MS.gene27222.t1 | AT1G34460 | 32.131 | 305 | 142 | 9 | 35 | 322 | 142 | 398 | 1.72e-37 | 142 |
| MS.gene27222.t1 | AT1G34460 | 32.131 | 305 | 142 | 9 | 35 | 322 | 142 | 398 | 1.72e-37 | 142 |
| MS.gene27222.t1 | AT1G34460 | 32.131 | 305 | 142 | 9 | 35 | 322 | 142 | 398 | 1.72e-37 | 142 |
| MS.gene27222.t1 | AT1G34460 | 32.131 | 305 | 142 | 9 | 35 | 322 | 142 | 398 | 1.72e-37 | 142 |
| MS.gene27222.t1 | AT1G34460 | 32.131 | 305 | 142 | 9 | 35 | 322 | 142 | 398 | 1.79e-37 | 142 |
| MS.gene27222.t1 | AT1G34460 | 32.131 | 305 | 142 | 9 | 35 | 322 | 142 | 398 | 1.85e-37 | 142 |
| MS.gene27222.t1 | AT1G14750 | 31.381 | 239 | 156 | 5 | 151 | 386 | 335 | 568 | 1.20e-20 | 94.7 |
| MS.gene27222.t1 | AT1G14750 | 31.381 | 239 | 156 | 5 | 151 | 386 | 335 | 568 | 1.23e-20 | 95.1 |
| MS.gene27222.t1 | AT1G14750 | 31.381 | 239 | 156 | 5 | 151 | 386 | 167 | 400 | 1.66e-20 | 93.6 |
| MS.gene27222.t1 | AT1G14750 | 31.381 | 239 | 155 | 6 | 151 | 386 | 167 | 399 | 2.33e-19 | 90.1 |
| MS.gene27222.t1 | AT1G47210 | 37.692 | 130 | 75 | 4 | 136 | 262 | 66 | 192 | 2.50e-17 | 80.5 |
Find 93 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTCCCGGCTCCGGCTTTC+TGG | 0.084802 | 8.3:+28976897 | None:intergenic |
| CCATTGAATTCGAATGAGTT+TGG | 0.261009 | 8.3:-28979133 | MS.gene27222:CDS |
| TATAGAGGGAGAGATGATTT+TGG | 0.262359 | 8.3:-28978900 | MS.gene27222:CDS |
| GGGCAGAACAGAAGAGCTTT+AGG | 0.305806 | 8.3:-28980144 | MS.gene27222:CDS |
| TGAAAAGAAACAGGCTGATC+TGG | 0.314414 | 8.3:-28979903 | MS.gene27222:CDS |
| ATAGGCTCTGGTTGGTCTTC+TGG | 0.316208 | 8.3:+28979076 | None:intergenic |
| TAATCTCATAGACAGATTCT+TGG | 0.324335 | 8.3:-28977944 | MS.gene27222:CDS |
| TGTAAGCTCTGTCAGCTATA+TGG | 0.334048 | 8.3:+28977815 | None:intergenic |
| GGTTGAGATGGAGGATATAG+AGG | 0.350208 | 8.3:-28978915 | MS.gene27222:CDS |
| AGGTTTGCTGCACAAATTGC+TGG | 0.354792 | 8.3:-28979292 | MS.gene27222:CDS |
| CCAAACTCATTCGAATTCAA+TGG | 0.363201 | 8.3:+28979133 | None:intergenic |
| AGTTTCTGTGCCTGTCGTTT+CGG | 0.378515 | 8.3:-28977845 | MS.gene27222:CDS |
| TTTCTTGGTTGAGCTATCTC+TGG | 0.388305 | 8.3:-28977415 | MS.gene27222:CDS |
| ACAGGAGTGCATAGGAAGTA+TGG | 0.389149 | 8.3:-28976872 | MS.gene27222:CDS |
| TCCTGTCAGTTTCCCGGCTC+CGG | 0.389685 | 8.3:+28976889 | None:intergenic |
| ATTACCTTCCTGCAGTATCT+TGG | 0.391858 | 8.3:-28978187 | MS.gene27222:intron |
| ATGCACTCCTGTCAGTTTCC+CGG | 0.396721 | 8.3:+28976883 | None:intergenic |
| CCAACCAGAGCCTATGACTT+TGG | 0.406687 | 8.3:-28979068 | MS.gene27222:CDS |
| TGAGATTTGTGAAAAGAAAC+AGG | 0.423211 | 8.3:-28979912 | MS.gene27222:CDS |
| CATGGTGGTGGAAGAATTGT+TGG | 0.432361 | 8.3:-28980165 | MS.gene27222:CDS |
| GCTGAAGTTTCCACCATCCT+TGG | 0.437665 | 8.3:-28977379 | MS.gene27222:CDS |
| TTCCACCAGAAAGCCGGAGC+CGG | 0.440451 | 8.3:-28976902 | MS.gene27222:CDS |
| TTAGGAAGAGGTTGAGATGG+AGG | 0.445763 | 8.3:-28978924 | MS.gene27222:intron |
| AAACAATTCTCTTGCGGTTG+TGG | 0.454374 | 8.3:-28978858 | MS.gene27222:CDS |
| AAGGAAAGACATTCTCGAAA+TGG | 0.454782 | 8.3:-28977791 | MS.gene27222:intron |
| TCCACCAGAAAGCCGGAGCC+GGG | 0.455107 | 8.3:-28976901 | MS.gene27222:CDS |
| TCAGTATGCTCCAAAGTCAT+AGG | 0.464004 | 8.3:+28979058 | None:intergenic |
| CTGTGTTTCACCAACCTACA+TGG | 0.464678 | 8.3:-28978164 | MS.gene27222:CDS |
| CTTGGTTGAGCTATCTCTGG+TGG | 0.487275 | 8.3:-28977412 | MS.gene27222:CDS |
| TGCTCCAAAGTCATAGGCTC+TGG | 0.489422 | 8.3:+28979064 | None:intergenic |
| GTTATGCCAAGAAAATTTCA+AGG | 0.494043 | 8.3:-28980354 | MS.gene27222:intron |
| CATCATCCTCACCTTGTGAT+GGG | 0.499765 | 8.3:+28979872 | None:intergenic |
| TCCCGGCTCCGGCTTTCTGG+TGG | 0.502002 | 8.3:+28976900 | None:intergenic |
| CGGTCTTGTTGCCATGCTGT+TGG | 0.504930 | 8.3:-28977884 | MS.gene27222:CDS |
| TTGACCTCAATGAGAGGATG+AGG | 0.506853 | 8.3:-28978132 | MS.gene27222:CDS |
| TAAAATAATACCATCTCAAG+TGG | 0.513574 | 8.3:+28979019 | None:intergenic |
| GCCGGAGCCGGGAAACTGAC+AGG | 0.514290 | 8.3:-28976890 | MS.gene27222:CDS |
| GCATCATCCTCACCTTGTGA+TGG | 0.528830 | 8.3:+28979871 | None:intergenic |
| TGACTTGAGTTCATCATCAA+TGG | 0.529128 | 8.3:+28979099 | None:intergenic |
| GAGTTCATCATCAATGGCTA+TGG | 0.531600 | 8.3:+28979105 | None:intergenic |
| AATCAAGTGGGTCATGGTGG+TGG | 0.531920 | 8.3:-28980177 | MS.gene27222:CDS |
| GTTGAGATGGAGGATATAGA+GGG | 0.532314 | 8.3:-28978914 | MS.gene27222:CDS |
| GAAAAGAAACAGGCTGATCT+GGG | 0.542053 | 8.3:-28979902 | MS.gene27222:CDS |
| CAATCTTTCTGTAGTAAGCA+TGG | 0.544092 | 8.3:+28978819 | None:intergenic |
| CTGTCAGTGGTTTCAAACAC+TGG | 0.547379 | 8.3:-28977323 | MS.gene27222:CDS |
| GTTGGATTCCACCAGAAAGC+CGG | 0.549405 | 8.3:-28976908 | MS.gene27222:CDS |
| TTTGAAACAGCTTGAGCTGG+TGG | 0.549805 | 8.3:-28977442 | MS.gene27222:intron |
| CTCATGAAAACATAAGCAGT+TGG | 0.552049 | 8.3:+28977584 | None:intergenic |
| TTCTCCAGAAGAAAACATGC+TGG | 0.555497 | 8.3:+28976815 | None:intergenic |
| ACCCTTGTGTTGTACACAAG+AGG | 0.563360 | 8.3:-28980086 | MS.gene27222:CDS |
| TAGAGAGTGCTCTATGCTGA+TGG | 0.570792 | 8.3:-28976930 | MS.gene27222:CDS |
| TCAAGTGGATCACTATGCAT+TGG | 0.570854 | 8.3:+28979034 | None:intergenic |
| CCAAAGTCATAGGCTCTGGT+TGG | 0.576471 | 8.3:+28979068 | None:intergenic |
| ACTAGTTGACTGGCTGATTG+AGG | 0.576580 | 8.3:-28978104 | MS.gene27222:intron |
| AGTTGTTCATCCATGTAGGT+TGG | 0.578213 | 8.3:+28978154 | None:intergenic |
| GAGTGCTCTATGCTGATGGT+TGG | 0.583871 | 8.3:-28976926 | MS.gene27222:CDS |
| TTTCATGAGAAGGTTTCTGA+AGG | 0.585150 | 8.3:-28977570 | MS.gene27222:CDS |
| ACCCTCTTGTGTACAACACA+AGG | 0.585319 | 8.3:+28980084 | None:intergenic |
| GGAATGAATCAAGTGGGTCA+TGG | 0.585969 | 8.3:-28980183 | MS.gene27222:CDS |
| TGCTTACTACAGAAAGATTG+AGG | 0.587812 | 8.3:-28978816 | MS.gene27222:intron |
| GCATAGTGATCCACTTGAGA+TGG | 0.589041 | 8.3:-28979029 | MS.gene27222:intron |
| TTGTGTACAACACAAGGGTA+AGG | 0.590139 | 8.3:+28980090 | None:intergenic |
| TGATGCAAACAATTCTCTTG+CGG | 0.590289 | 8.3:-28978864 | MS.gene27222:CDS |
| GCAGCAGCAGCAACCAAGGA+TGG | 0.592621 | 8.3:+28977366 | None:intergenic |
| AAGAGAAACTACCTCAGCAT+AGG | 0.594491 | 8.3:+28979258 | None:intergenic |
| AGTAAGAAAGAAACTTCAGC+TGG | 0.596144 | 8.3:-28977908 | MS.gene27222:CDS |
| GACTGCAGCAGCAGCAACCA+AGG | 0.597418 | 8.3:+28977362 | None:intergenic |
| ATGGTGGTGGAAGAATTGTT+GGG | 0.599493 | 8.3:-28980164 | MS.gene27222:CDS |
| TGAGGGCTATACTAGTTGAC+TGG | 0.601446 | 8.3:-28978114 | MS.gene27222:CDS |
| CAGAACAGAAGAGCTTTAGG+AGG | 0.603464 | 8.3:-28980141 | MS.gene27222:CDS |
| GGAAACTGACAGGAGTGCAT+AGG | 0.605234 | 8.3:-28976880 | MS.gene27222:CDS |
| TGGATCAGATCCGAAACGAC+AGG | 0.607714 | 8.3:+28977835 | None:intergenic |
| GCAGCAGCAACCAAGGATGG+TGG | 0.610277 | 8.3:+28977369 | None:intergenic |
| CCCTTGTGTTGTACACAAGA+GGG | 0.611245 | 8.3:-28980085 | MS.gene27222:CDS |
| TAGCCCTCATCCTCTCATTG+AGG | 0.620243 | 8.3:+28978128 | None:intergenic |
| TTTAGGAGGAATGAATCAAG+TGG | 0.621092 | 8.3:-28980190 | MS.gene27222:intron |
| GGAGAACAAGAACCAGCCAT+AGG | 0.621435 | 8.3:-28976798 | None:intergenic |
| GTCAAGTTGTTCATCCATGT+AGG | 0.623557 | 8.3:+28978150 | None:intergenic |
| AGAAAGAAACTTCAGCTGGT+CGG | 0.629728 | 8.3:-28977904 | MS.gene27222:CDS |
| AACAACTTGACCTCAATGAG+AGG | 0.630153 | 8.3:-28978138 | MS.gene27222:CDS |
| GCTGTTGGCATGCAAGTATG+AGG | 0.632125 | 8.3:-28977869 | MS.gene27222:CDS |
| ACAGCTCAATGCACTGTCAG+TGG | 0.642330 | 8.3:-28977336 | MS.gene27222:CDS |
| TTAGGAGGAATGAATCAAGT+GGG | 0.649963 | 8.3:-28980189 | MS.gene27222:intron |
| TGACCTCAATGAGAGGATGA+GGG | 0.651271 | 8.3:-28978131 | MS.gene27222:CDS |
| ATACTTGCATGCCAACAGCA+TGG | 0.657153 | 8.3:+28977873 | None:intergenic |
| AGAACAGAAGAGCTTTAGGA+GGG | 0.662736 | 8.3:-28980140 | MS.gene27222:CDS |
| GAAACAGTGTCTCTTGCATG+AGG | 0.663445 | 8.3:+28977974 | None:intergenic |
| CTCACAGCAATCCTATGCTG+AGG | 0.663582 | 8.3:-28979269 | MS.gene27222:intron |
| ATGAATCAAGTGGGTCATGG+TGG | 0.688882 | 8.3:-28980180 | MS.gene27222:CDS |
| TAGCTGACAGAGCTTACACA+AGG | 0.713688 | 8.3:-28977810 | MS.gene27222:CDS |
| TGGGACATAGACCCATCACA+AGG | 0.714635 | 8.3:-28979883 | MS.gene27222:intron |
| CCCTCTTGTGTACAACACAA+GGG | 0.715744 | 8.3:+28980085 | None:intergenic |
| ACTGGAACAAGACATGCGAG+TGG | 0.734063 | 8.3:-28977305 | MS.gene27222:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTATGATTATTAGTT+TGG | - | chr8.3:28977196-28977215 | MS.gene27222:intron | 10.0% |
| !! | AAGAATTATTTGATCAAAAT+TGG | - | chr8.3:28977529-28977548 | MS.gene27222:intron | 15.0% |
| !! | TGAATTTAAAGATTTGAATT+GGG | - | chr8.3:28976948-28976967 | MS.gene27222:intron | 15.0% |
| !! | TTGAATTTAAAGATTTGAAT+TGG | - | chr8.3:28976947-28976966 | MS.gene27222:intron | 15.0% |
| !!! | AATTTTGAAATTTAATGTCA+TGG | - | chr8.3:28977397-28977416 | MS.gene27222:CDS | 15.0% |
| !!! | GATTCAAAATTAGTTTTTTA+TGG | - | chr8.3:28976922-28976941 | MS.gene27222:CDS | 15.0% |
| !!! | TTGAATCTTTTTTGAATTTT+AGG | - | chr8.3:28976982-28977001 | MS.gene27222:intron | 15.0% |
| !!! | TTTCTTTGTCATTTAATAAT+CGG | - | chr8.3:28979138-28979157 | MS.gene27222:CDS | 15.0% |
| !! | AATAATTTCATTCGACAATA+AGG | + | chr8.3:28977590-28977609 | None:intergenic | 20.0% |
| !! | ATGACAAAGAAATCAATAAT+TGG | + | chr8.3:28979130-28979149 | None:intergenic | 20.0% |
| !! | ATGATTTATGTAATGAAATG+AGG | - | chr8.3:28977836-28977855 | MS.gene27222:CDS | 20.0% |
| !! | ATGGAATTATTATTAAGCTT+AGG | - | chr8.3:28978690-28978709 | MS.gene27222:intron | 20.0% |
| !! | ATGTTGATGTATTGTTAATT+AGG | - | chr8.3:28977874-28977893 | MS.gene27222:CDS | 20.0% |
| !! | ATTAGTTACATTGAATTGAA+CGG | + | chr8.3:28979515-28979534 | None:intergenic | 20.0% |
| !! | ATTTCATTACATAAATCATG+GGG | + | chr8.3:28977835-28977854 | None:intergenic | 20.0% |
| !! | CATTTCATTACATAAATCAT+GGG | + | chr8.3:28977836-28977855 | None:intergenic | 20.0% |
| !! | TATTGTCAAGTGAAATTATA+GGG | - | chr8.3:28977432-28977451 | MS.gene27222:CDS | 20.0% |
| !! | TCATTTCATTACATAAATCA+TGG | + | chr8.3:28977837-28977856 | None:intergenic | 20.0% |
| !! | TGAATTGTCAAATGAAATTA+TGG | - | chr8.3:28977750-28977769 | MS.gene27222:intron | 20.0% |
| !! | TGTGAAAAATTATTACAAGA+TGG | + | chr8.3:28979436-28979455 | None:intergenic | 20.0% |
| !! | TTATTGTCAAGTGAAATTAT+AGG | - | chr8.3:28977431-28977450 | MS.gene27222:CDS | 20.0% |
| !! | TTTAACTAAATTCTGAATCA+TGG | - | chr8.3:28978002-28978021 | MS.gene27222:intron | 20.0% |
| !!! | AAATTTTGATTGGAACATAA+AGG | - | chr8.3:28976868-28976887 | MS.gene27222:CDS | 20.0% |
| !!! | AATCTTTTTTGAATTTTAGG+AGG | - | chr8.3:28976985-28977004 | MS.gene27222:intron | 20.0% |
| !!! | AATTTTGAAATTGAATGTCA+TGG | - | chr8.3:28977557-28977576 | MS.gene27222:CDS | 20.0% |
| !!! | TACATTGTTGAAATTTTGAT+TGG | - | chr8.3:28976858-28976877 | MS.gene27222:CDS | 20.0% |
| !!! | TTATTAGTTTGGTTTCTTTA+AGG | - | chr8.3:28977207-28977226 | MS.gene27222:intron | 20.0% |
| !!! | TTGAAGTTGATTATAAACAA+TGG | - | chr8.3:28978671-28978690 | MS.gene27222:intron | 20.0% |
| !!! | TTTTCTTGTTTTGTTTTTGT+TGG | - | chr8.3:28977343-28977362 | MS.gene27222:CDS | 20.0% |
| ! | AATATCTAACACTGTTAAGT+TGG | - | chr8.3:28978842-28978861 | MS.gene27222:CDS | 25.0% |
| ! | CAAAGAAATCAATAATTGGA+AGG | + | chr8.3:28979126-28979145 | None:intergenic | 25.0% |
| ! | CCATAAGTACTTATACTATA+AGG | + | chr8.3:28980150-28980169 | None:intergenic | 25.0% |
| ! | CCTTATAGTATAAGTACTTA+TGG | - | chr8.3:28980147-28980166 | MS.gene27222:CDS | 25.0% |
| ! | GAGATATAAGGAACAATAAA+TGG | + | chr8.3:28978875-28978894 | None:intergenic | 25.0% |
| ! | TAAAATAATACCATCTCAAG+TGG | + | chr8.3:28978173-28978192 | None:intergenic | 25.0% |
| ! | TATGACTAATGAAACTCATT+TGG | + | chr8.3:28979684-28979703 | None:intergenic | 25.0% |
| ! | TCAATTTCAAACATGTAGAT+TGG | - | chr8.3:28977458-28977477 | MS.gene27222:intron | 25.0% |
| ! | TTGATGTATTGTTAATTAGG+AGG | - | chr8.3:28977877-28977896 | MS.gene27222:CDS | 25.0% |
| !! | AATGTACCTTGAAATTTTCT+TGG | + | chr8.3:28976844-28976863 | None:intergenic | 25.0% |
| !! | ATAGAACTTTTCACATTTGT+TGG | - | chr8.3:28979487-28979506 | MS.gene27222:intron | 25.0% |
| !!! | TGTTTTCTTTTGTTGTAGTT+AGG | - | chr8.3:28977670-28977689 | MS.gene27222:intron | 25.0% |
| !!! | TTTTGTTTTCGATTGTAGAT+TGG | - | chr8.3:28977608-28977627 | MS.gene27222:CDS | 25.0% |
| AAATTTAATGCCATAGACCA+TGG | - | chr8.3:28977724-28977743 | MS.gene27222:intron | 30.0% | |
| AACTTACAAGTTGTGAAACT+TGG | - | chr8.3:28978584-28978603 | MS.gene27222:intron | 30.0% | |
| ACTTATACTATAAGGCTGTT+TGG | + | chr8.3:28980142-28980161 | None:intergenic | 30.0% | |
| AGATCATAGATATTCGAATC+AGG | + | chr8.3:28978727-28978746 | None:intergenic | 30.0% | |
| ATATCCAATGATTACGAGAA+AGG | - | chr8.3:28978908-28978927 | MS.gene27222:CDS | 30.0% | |
| ATATCTATGATCTTGCAAGT+TGG | - | chr8.3:28978734-28978753 | MS.gene27222:intron | 30.0% | |
| ATTAGTCGCATTGAATTGAA+CGG | + | chr8.3:28979469-28979488 | None:intergenic | 30.0% | |
| CACTTGACAATAAAGTAACA+TGG | + | chr8.3:28977424-28977443 | None:intergenic | 30.0% | |
| GACGACATATATTGCATATT+TGG | + | chr8.3:28978765-28978784 | None:intergenic | 30.0% | |
| GATCATAGATATTCGAATCA+GGG | + | chr8.3:28978726-28978745 | None:intergenic | 30.0% | |
| GCAGTAAAGTATGAGATATA+AGG | + | chr8.3:28978887-28978906 | None:intergenic | 30.0% | |
| GGGAAACATTTGATCAAAAT+TGG | - | chr8.3:28977370-28977389 | MS.gene27222:CDS | 30.0% | |
| GTTAGTCATCAAAGTAAGAT+TGG | + | chr8.3:28978979-28978998 | None:intergenic | 30.0% | |
| GTTATGCCAAGAAAATTTCA+AGG | - | chr8.3:28976835-28976854 | MS.gene27222:CDS | 30.0% | |
| TAATCTCATAGACAGATTCT+TGG | - | chr8.3:28979245-28979264 | MS.gene27222:intron | 30.0% | |
| TCACAAAACTACTTCTATCA+GGG | + | chr8.3:28978430-28978449 | None:intergenic | 30.0% | |
| TGAAATTGAATGTCATGGAA+TGG | - | chr8.3:28977562-28977581 | MS.gene27222:CDS | 30.0% | |
| TGAGATTTGTGAAAAGAAAC+AGG | - | chr8.3:28977277-28977296 | MS.gene27222:CDS | 30.0% | |
| TGATTGGAACATAAAGGAAA+AGG | - | chr8.3:28976874-28976893 | MS.gene27222:CDS | 30.0% | |
| TTCACAAAACTACTTCTATC+AGG | + | chr8.3:28978431-28978450 | None:intergenic | 30.0% | |
| TTGTAGCTTCATTAAATTCC+CGG | - | chr8.3:28980073-28980092 | MS.gene27222:intron | 30.0% | |
| ! | ATCAATCAGAATTTTGTGCA+TGG | - | chr8.3:28977072-28977091 | MS.gene27222:intron | 30.0% |
| !!! | GTTGATTGATGCTGATTTTT+GGG | - | chr8.3:28977792-28977811 | MS.gene27222:CDS | 30.0% |
| !!! | GTTTTGTTTTTGTTGGTGTT+GGG | - | chr8.3:28977350-28977369 | MS.gene27222:CDS | 30.0% |
| !!! | TGTTGATTGATGCTGATTTT+TGG | - | chr8.3:28977791-28977810 | MS.gene27222:intron | 30.0% |
| !!! | TGTTTTGTTTTTGTTGGTGT+TGG | - | chr8.3:28977349-28977368 | MS.gene27222:CDS | 30.0% |
| !!! | TTGATTGATGCTGATTTTTG+GGG | - | chr8.3:28977793-28977812 | MS.gene27222:CDS | 30.0% |
| !!! | TTGTACTACTTTTTAGGAAG+AGG | - | chr8.3:28978253-28978272 | MS.gene27222:intron | 30.0% |
| AAGGAAAGACATTCTCGAAA+TGG | - | chr8.3:28979398-28979417 | MS.gene27222:intron | 35.0% | |
| AGTAAGAAAGAAACTTCAGC+TGG | - | chr8.3:28979281-28979300 | MS.gene27222:CDS | 35.0% | |
| ATAGATATTCGAATCAGGGT+TGG | + | chr8.3:28978722-28978741 | None:intergenic | 35.0% | |
| CAATCTTTCTGTAGTAAGCA+TGG | + | chr8.3:28978373-28978392 | None:intergenic | 35.0% | |
| CATTTGACAATTCAGTACCA+TGG | + | chr8.3:28977744-28977763 | None:intergenic | 35.0% | |
| CCAAACTCATTCGAATTCAA+TGG | + | chr8.3:28978059-28978078 | None:intergenic | 35.0% | |
| CCATTGAATTCGAATGAGTT+TGG | - | chr8.3:28978056-28978075 | MS.gene27222:intron | 35.0% | |
| CTCATGAAAACATAAGCAGT+TGG | + | chr8.3:28979608-28979627 | None:intergenic | 35.0% | |
| TAAACACTATCTGTCAAGTG+TGG | + | chr8.3:28978817-28978836 | None:intergenic | 35.0% | |
| TAGTGGCTAATTGAAAAGAG+AGG | + | chr8.3:28979954-28979973 | None:intergenic | 35.0% | |
| TGACTTGAGTTCATCATCAA+TGG | + | chr8.3:28978093-28978112 | None:intergenic | 35.0% | |
| TGATGCAAACAATTCTCTTG+CGG | - | chr8.3:28978325-28978344 | MS.gene27222:intron | 35.0% | |
| TGCTTACTACAGAAAGATTG+AGG | - | chr8.3:28978373-28978392 | MS.gene27222:intron | 35.0% | |
| TTAAAGCTAGGGTTTGCATA+TGG | + | chr8.3:28980205-28980224 | None:intergenic | 35.0% | |
| TTAGGAGGAATGAATCAAGT+GGG | - | chr8.3:28977000-28977019 | MS.gene27222:intron | 35.0% | |
| TTCACCTTTCTCGTAATCAT+TGG | + | chr8.3:28978915-28978934 | None:intergenic | 35.0% | |
| TTGTAGATTGGTGCAGATTA+AGG | - | chr8.3:28977620-28977639 | MS.gene27222:CDS | 35.0% | |
| TTTAGGAGGAATGAATCAAG+TGG | - | chr8.3:28976999-28977018 | MS.gene27222:intron | 35.0% | |
| TTTCATGAGAAGGTTTCTGA+AGG | - | chr8.3:28979619-28979638 | MS.gene27222:intron | 35.0% | |
| ! | CTCTTTTCAATTAGCCACTA+GGG | - | chr8.3:28979954-28979973 | MS.gene27222:intron | 35.0% |
| ! | CTGCTTATGTTTTCATGAGA+AGG | - | chr8.3:28979609-28979628 | MS.gene27222:intron | 35.0% |
| ! | TATAGAGGGAGAGATGATTT+TGG | - | chr8.3:28978289-28978308 | MS.gene27222:intron | 35.0% |
| ! | TCTCTTTTCAATTAGCCACT+AGG | - | chr8.3:28979953-28979972 | MS.gene27222:intron | 35.0% |
| ! | TTGTGCTTTTGCATGTAAAG+TGG | - | chr8.3:28978491-28978510 | MS.gene27222:intron | 35.0% |
| !! | TTTTTAGGAAGAGGTTGAGA+TGG | - | chr8.3:28978262-28978281 | MS.gene27222:intron | 35.0% |
| !!! | ATAGTGTGTGTTTGTTTTGC+TGG | - | chr8.3:28980010-28980029 | MS.gene27222:intron | 35.0% |
| !!! | GATTTTTTTCCAAACACCGT+AGG | - | chr8.3:28979541-28979560 | MS.gene27222:intron | 35.0% |
| !!! | GTCGACTTGTACTACTTTTT+AGG | - | chr8.3:28978247-28978266 | MS.gene27222:intron | 35.0% |
| !!! | TATTTTGAAACAGCTTGAGC+TGG | - | chr8.3:28979744-28979763 | MS.gene27222:intron | 35.0% |
| AAACAATTCTCTTGCGGTTG+TGG | - | chr8.3:28978331-28978350 | MS.gene27222:intron | 40.0% | |
| AACAACTTGACCTCAATGAG+AGG | - | chr8.3:28979051-28979070 | MS.gene27222:CDS | 40.0% | |
| AAGAGAAACTACCTCAGCAT+AGG | + | chr8.3:28977934-28977953 | None:intergenic | 40.0% | |
| AATTCAATCACTGTCAGGTG+TGG | + | chr8.3:28978526-28978545 | None:intergenic | 40.0% | |
| AGAAAGAAACTTCAGCTGGT+CGG | - | chr8.3:28979285-28979304 | MS.gene27222:CDS | 40.0% | |
| AGTTGTTCATCCATGTAGGT+TGG | + | chr8.3:28979038-28979057 | None:intergenic | 40.0% | |
| ATCAGTGCCATGTTAAAGCT+AGG | + | chr8.3:28980217-28980236 | None:intergenic | 40.0% | |
| ATTACCTTCCTGCAGTATCT+TGG | - | chr8.3:28979002-28979021 | MS.gene27222:intron | 40.0% | |
| CAATTCAGTACCATGGTCTA+TGG | + | chr8.3:28977737-28977756 | None:intergenic | 40.0% | |
| CTACAGAAAGATTGAGGTAC+TGG | - | chr8.3:28978379-28978398 | MS.gene27222:intron | 40.0% | |
| GAAAAGAAACAGGCTGATCT+GGG | - | chr8.3:28977287-28977306 | MS.gene27222:CDS | 40.0% | |
| GAGTTCATCATCAATGGCTA+TGG | + | chr8.3:28978087-28978106 | None:intergenic | 40.0% | |
| GCTTGCTTGATCGATATATC+AGG | - | chr8.3:28979176-28979195 | MS.gene27222:intron | 40.0% | |
| GTGCAAATTCAATCACTGTC+AGG | + | chr8.3:28978531-28978550 | None:intergenic | 40.0% | |
| GTTGAGATGGAGGATATAGA+GGG | - | chr8.3:28978275-28978294 | MS.gene27222:intron | 40.0% | |
| TAGCTTCATTAAATTCCCGG+TGG | - | chr8.3:28980076-28980095 | MS.gene27222:CDS | 40.0% | |
| TCAAACATGTAGATTGGTGC+TGG | - | chr8.3:28977464-28977483 | MS.gene27222:intron | 40.0% | |
| TCAAGTGGATCACTATGCAT+TGG | + | chr8.3:28978158-28978177 | None:intergenic | 40.0% | |
| TCAGTATGCTCCAAAGTCAT+AGG | + | chr8.3:28978134-28978153 | None:intergenic | 40.0% | |
| TCAGTGCCATGTTAAAGCTA+GGG | + | chr8.3:28980216-28980235 | None:intergenic | 40.0% | |
| TGAAAAGAAACAGGCTGATC+TGG | - | chr8.3:28977286-28977305 | MS.gene27222:CDS | 40.0% | |
| TGTAAGCTCTGTCAGCTATA+TGG | + | chr8.3:28979377-28979396 | None:intergenic | 40.0% | |
| TTCTCCAGAAGAAAACATGC+TGG | + | chr8.3:28980377-28980396 | None:intergenic | 40.0% | |
| TTGTGTACAACACAAGGGTA+AGG | + | chr8.3:28977102-28977121 | None:intergenic | 40.0% | |
| TTTCTTGGTTGAGCTATCTC+TGG | - | chr8.3:28979774-28979793 | MS.gene27222:intron | 40.0% | |
| ! | GTCAAGTTGTTCATCCATGT+AGG | + | chr8.3:28979042-28979061 | None:intergenic | 40.0% |
| ! | TGAACCAGCATGTTTTCTTC+TGG | - | chr8.3:28980370-28980389 | MS.gene27222:CDS | 40.0% |
| ! | TTTTCTTGGCATAACTGCGT+TGG | + | chr8.3:28976830-28976849 | None:intergenic | 40.0% |
| !! | AGAACAGAAGAGCTTTAGGA+GGG | - | chr8.3:28977049-28977068 | MS.gene27222:intron | 40.0% |
| !! | ATGGTGGTGGAAGAATTGTT+GGG | - | chr8.3:28977025-28977044 | MS.gene27222:intron | 40.0% |
| !! | TGCAAACCCTAGCTTTAACA+TGG | - | chr8.3:28980207-28980226 | MS.gene27222:intron | 40.0% |
| AAACACAGCCAAGATACTGC+AGG | + | chr8.3:28979013-28979032 | None:intergenic | 45.0% | |
| ACCCTCTTGTGTACAACACA+AGG | + | chr8.3:28977108-28977127 | None:intergenic | 45.0% | |
| ACCCTTGTGTTGTACACAAG+AGG | - | chr8.3:28977103-28977122 | MS.gene27222:intron | 45.0% | |
| ATACTTGCATGCCAACAGCA+TGG | + | chr8.3:28979319-28979338 | None:intergenic | 45.0% | |
| ATGAATCAAGTGGGTCATGG+TGG | - | chr8.3:28977009-28977028 | MS.gene27222:intron | 45.0% | |
| CATCATCCTCACCTTGTGAT+GGG | + | chr8.3:28977320-28977339 | None:intergenic | 45.0% | |
| CATTGAGCAAAACGCAGGTT+TGG | + | chr8.3:28980046-28980065 | None:intergenic | 45.0% | |
| CCCTCTTGTGTACAACACAA+GGG | + | chr8.3:28977107-28977126 | None:intergenic | 45.0% | |
| CCCTTGTGTTGTACACAAGA+GGG | - | chr8.3:28977104-28977123 | MS.gene27222:intron | 45.0% | |
| CTGTCAGTGGTTTCAAACAC+TGG | - | chr8.3:28979866-28979885 | MS.gene27222:intron | 45.0% | |
| CTGTGTTTCACCAACCTACA+TGG | - | chr8.3:28979025-28979044 | MS.gene27222:intron | 45.0% | |
| GAAACAGTGTCTCTTGCATG+AGG | + | chr8.3:28979218-28979237 | None:intergenic | 45.0% | |
| GCATAGTGATCCACTTGAGA+TGG | - | chr8.3:28978160-28978179 | MS.gene27222:CDS | 45.0% | |
| GGAATGAATCAAGTGGGTCA+TGG | - | chr8.3:28977006-28977025 | MS.gene27222:intron | 45.0% | |
| GGTTGAGATGGAGGATATAG+AGG | - | chr8.3:28978274-28978293 | MS.gene27222:intron | 45.0% | |
| TAGCTGACAGAGCTTACACA+AGG | - | chr8.3:28979379-28979398 | MS.gene27222:intron | 45.0% | |
| TGACCTCAATGAGAGGATGA+GGG | - | chr8.3:28979058-28979077 | MS.gene27222:CDS | 45.0% | |
| TGAGGGCTATACTAGTTGAC+TGG | - | chr8.3:28979075-28979094 | MS.gene27222:CDS | 45.0% | |
| TTAGGAAGAGGTTGAGATGG+AGG | - | chr8.3:28978265-28978284 | MS.gene27222:intron | 45.0% | |
| TTATCGAAACAGTGCCCTAG+TGG | + | chr8.3:28979971-28979990 | None:intergenic | 45.0% | |
| TTGACCTCAATGAGAGGATG+AGG | - | chr8.3:28979057-28979076 | MS.gene27222:CDS | 45.0% | |
| ! | ACAGGAGTGCATAGGAAGTA+TGG | - | chr8.3:28980317-28980336 | MS.gene27222:intron | 45.0% |
| ! | ACTAGTTGACTGGCTGATTG+AGG | - | chr8.3:28979085-28979104 | MS.gene27222:CDS | 45.0% |
| ! | AGTTTCTGTGCCTGTCGTTT+CGG | - | chr8.3:28979344-28979363 | MS.gene27222:intron | 45.0% |
| ! | TGTAGCATTGAGCAAAACGC+AGG | + | chr8.3:28980051-28980070 | None:intergenic | 45.0% |
| ! | TTTGAAACAGCTTGAGCTGG+TGG | - | chr8.3:28979747-28979766 | MS.gene27222:intron | 45.0% |
| !! | AGGTTTGCTGCACAAATTGC+TGG | - | chr8.3:28977897-28977916 | MS.gene27222:CDS | 45.0% |
| !! | ATGTAGATTGGTGCTGGTTG+AGG | - | chr8.3:28977470-28977489 | MS.gene27222:intron | 45.0% |
| !! | CAGAACAGAAGAGCTTTAGG+AGG | - | chr8.3:28977048-28977067 | MS.gene27222:intron | 45.0% |
| !! | CATGGTGGTGGAAGAATTGT+TGG | - | chr8.3:28977024-28977043 | MS.gene27222:intron | 45.0% |
| !! | TAGAGAGTGCTCTATGCTGA+TGG | - | chr8.3:28980259-28980278 | MS.gene27222:intron | 45.0% |
| !! | TTGAGCATCGACTTCTCCTA+CGG | + | chr8.3:28979560-28979579 | None:intergenic | 45.0% |
| !!! | TGAGCTGGTGGCTTTTTTCT+TGG | - | chr8.3:28979759-28979778 | MS.gene27222:intron | 45.0% |
| AATCAAGTGGGTCATGGTGG+TGG | - | chr8.3:28977012-28977031 | MS.gene27222:intron | 50.0% | |
| AATTCCCGGTGGAAATGCCT+CGG | - | chr8.3:28980087-28980106 | MS.gene27222:CDS | 50.0% | |
| ACAGCCAAGATACTGCAGGA+AGG | + | chr8.3:28979009-28979028 | None:intergenic | 50.0% | |
| ACAGCTCAATGCACTGTCAG+TGG | - | chr8.3:28979853-28979872 | MS.gene27222:intron | 50.0% | |
| ACTGGAACAAGACATGCGAG+TGG | - | chr8.3:28979884-28979903 | MS.gene27222:CDS | 50.0% | |
| AGCCTAAATATCACGTCCCG+AGG | + | chr8.3:28980107-28980126 | None:intergenic | 50.0% | |
| ATGCACTCCTGTCAGTTTCC+CGG | + | chr8.3:28980309-28980328 | None:intergenic | 50.0% | |
| CATAGACCCATCACAAGGTG+AGG | - | chr8.3:28977311-28977330 | MS.gene27222:CDS | 50.0% | |
| CCAACCAGAGCCTATGACTT+TGG | - | chr8.3:28978121-28978140 | MS.gene27222:CDS | 50.0% | |
| CTCACAGCAATCCTATGCTG+AGG | - | chr8.3:28977920-28977939 | MS.gene27222:CDS | 50.0% | |
| CTTGGTTGAGCTATCTCTGG+TGG | - | chr8.3:28979777-28979796 | MS.gene27222:intron | 50.0% | |
| GAGTGCTCTATGCTGATGGT+TGG | - | chr8.3:28980263-28980282 | MS.gene27222:intron | 50.0% | |
| GCATCATCCTCACCTTGTGA+TGG | + | chr8.3:28977321-28977340 | None:intergenic | 50.0% | |
| GCTGAAGTTTCCACCATCCT+TGG | - | chr8.3:28979810-28979829 | MS.gene27222:intron | 50.0% | |
| GCTGTTGGCATGCAAGTATG+AGG | - | chr8.3:28979320-28979339 | MS.gene27222:intron | 50.0% | |
| GGGCAGAACAGAAGAGCTTT+AGG | - | chr8.3:28977045-28977064 | MS.gene27222:intron | 50.0% | |
| GTTGGATTCCACCAGAAAGC+CGG | - | chr8.3:28980281-28980300 | MS.gene27222:intron | 50.0% | |
| TAGCCCTCATCCTCTCATTG+AGG | + | chr8.3:28979064-28979083 | None:intergenic | 50.0% | |
| TCGACTTCTCCTACGGTGTT+TGG | + | chr8.3:28979553-28979572 | None:intergenic | 50.0% | |
| TGCCTCGGGACGTGATATTT+AGG | - | chr8.3:28980102-28980121 | MS.gene27222:CDS | 50.0% | |
| TGCTCCAAAGTCATAGGCTC+TGG | + | chr8.3:28978128-28978147 | None:intergenic | 50.0% | |
| TGGATCAGATCCGAAACGAC+AGG | + | chr8.3:28979357-28979376 | None:intergenic | 50.0% | |
| TGGGACATAGACCCATCACA+AGG | - | chr8.3:28977306-28977325 | MS.gene27222:CDS | 50.0% | |
| ! | CCAAAGTCATAGGCTCTGGT+TGG | + | chr8.3:28978124-28978143 | None:intergenic | 50.0% |
| ! | GGAAACTGACAGGAGTGCAT+AGG | - | chr8.3:28980309-28980328 | MS.gene27222:intron | 50.0% |
| !! | ATAGGCTCTGGTTGGTCTTC+TGG | + | chr8.3:28978116-28978135 | None:intergenic | 50.0% |
| ATTCCCGGTGGAAATGCCTC+GGG | - | chr8.3:28980088-28980107 | MS.gene27222:CDS | 55.0% | |
| !! | CGGTCTTGTTGCCATGCTGT+TGG | - | chr8.3:28979305-28979324 | MS.gene27222:intron | 55.0% |
| GACTGCAGCAGCAGCAACCA+AGG | + | chr8.3:28979830-28979849 | None:intergenic | 60.0% | |
| GCAGCAGCAACCAAGGATGG+TGG | + | chr8.3:28979823-28979842 | None:intergenic | 60.0% | |
| GCAGCAGCAGCAACCAAGGA+TGG | + | chr8.3:28979826-28979845 | None:intergenic | 60.0% | |
| TCCTGTCAGTTTCCCGGCTC+CGG | + | chr8.3:28980303-28980322 | None:intergenic | 60.0% | |
| TTCCACCAGAAAGCCGGAGC+CGG | - | chr8.3:28980287-28980306 | MS.gene27222:intron | 60.0% | |
| ! | ACGTCCCGAGGCATTTCCAC+CGG | + | chr8.3:28980095-28980114 | None:intergenic | 60.0% |
| GTTTCCCGGCTCCGGCTTTC+TGG | + | chr8.3:28980295-28980314 | None:intergenic | 65.0% | |
| TCCACCAGAAAGCCGGAGCC+GGG | - | chr8.3:28980288-28980307 | MS.gene27222:intron | 65.0% | |
| ! | CGTCCCGAGGCATTTCCACC+GGG | + | chr8.3:28980094-28980113 | None:intergenic | 65.0% |
| GCCGGAGCCGGGAAACTGAC+AGG | - | chr8.3:28980299-28980318 | MS.gene27222:intron | 70.0% | |
| TCCCGGCTCCGGCTTTCTGG+TGG | + | chr8.3:28980292-28980311 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 28976799 | 28980412 | 28976799 | ID=MS.gene27222 |
| chr8.3 | mRNA | 28976799 | 28980412 | 28976799 | ID=MS.gene27222.t1;Parent=MS.gene27222 |
| chr8.3 | exon | 28980355 | 28980412 | 28980355 | ID=MS.gene27222.t1.exon1;Parent=MS.gene27222.t1 |
| chr8.3 | CDS | 28980355 | 28980412 | 28980355 | ID=cds.MS.gene27222.t1;Parent=MS.gene27222.t1 |
| chr8.3 | exon | 28980075 | 28980207 | 28980075 | ID=MS.gene27222.t1.exon2;Parent=MS.gene27222.t1 |
| chr8.3 | CDS | 28980075 | 28980207 | 28980075 | ID=cds.MS.gene27222.t1;Parent=MS.gene27222.t1 |
| chr8.3 | exon | 28979884 | 28979940 | 28979884 | ID=MS.gene27222.t1.exon3;Parent=MS.gene27222.t1 |
| chr8.3 | CDS | 28979884 | 28979940 | 28979884 | ID=cds.MS.gene27222.t1;Parent=MS.gene27222.t1 |
| chr8.3 | exon | 28979270 | 28979315 | 28979270 | ID=MS.gene27222.t1.exon4;Parent=MS.gene27222.t1 |
| chr8.3 | CDS | 28979270 | 28979315 | 28979270 | ID=cds.MS.gene27222.t1;Parent=MS.gene27222.t1 |
| chr8.3 | exon | 28979030 | 28979170 | 28979030 | ID=MS.gene27222.t1.exon5;Parent=MS.gene27222.t1 |
| chr8.3 | CDS | 28979030 | 28979170 | 28979030 | ID=cds.MS.gene27222.t1;Parent=MS.gene27222.t1 |
| chr8.3 | exon | 28978817 | 28978942 | 28978817 | ID=MS.gene27222.t1.exon6;Parent=MS.gene27222.t1 |
| chr8.3 | CDS | 28978817 | 28978942 | 28978817 | ID=cds.MS.gene27222.t1;Parent=MS.gene27222.t1 |
| chr8.3 | exon | 28978105 | 28978194 | 28978105 | ID=MS.gene27222.t1.exon7;Parent=MS.gene27222.t1 |
| chr8.3 | CDS | 28978105 | 28978194 | 28978105 | ID=cds.MS.gene27222.t1;Parent=MS.gene27222.t1 |
| chr8.3 | exon | 28977792 | 28978013 | 28977792 | ID=MS.gene27222.t1.exon8;Parent=MS.gene27222.t1 |
| chr8.3 | CDS | 28977792 | 28978013 | 28977792 | ID=cds.MS.gene27222.t1;Parent=MS.gene27222.t1 |
| chr8.3 | exon | 28977550 | 28977648 | 28977550 | ID=MS.gene27222.t1.exon9;Parent=MS.gene27222.t1 |
| chr8.3 | CDS | 28977550 | 28977648 | 28977550 | ID=cds.MS.gene27222.t1;Parent=MS.gene27222.t1 |
| chr8.3 | exon | 28977276 | 28977454 | 28977276 | ID=MS.gene27222.t1.exon10;Parent=MS.gene27222.t1 |
| chr8.3 | CDS | 28977276 | 28977454 | 28977276 | ID=cds.MS.gene27222.t1;Parent=MS.gene27222.t1 |
| chr8.3 | exon | 28976799 | 28976949 | 28976799 | ID=MS.gene27222.t1.exon11;Parent=MS.gene27222.t1 |
| chr8.3 | CDS | 28976799 | 28976949 | 28976799 | ID=cds.MS.gene27222.t1;Parent=MS.gene27222.t1 |
| Gene Sequence |
| Protein sequence |
