AlfalfaGEDB | MS.gene059426

M. sativa cultivar XinJiangDaYe / MS.gene059426

KEGG: -
GO: -
PFAM: PF05911.14

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene059426.t1	XP_003607925.1	95.2	124	6	0	1	124	306	429	2.00E-55	224.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene059426.t1	Q9SLN1	38.2	123	75	1	1	123	299	420	2.0e-11	70.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene059426.t1	G7JK12	95.2	124	6	0	1	124	306	429	1.5e-55	224.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049350	MS.gene059426	0.80246	5.55E-49	-1.69E-46
MS.gene053144	MS.gene059426	0.81158	6.52E-51	-1.69E-46
MS.gene053536	MS.gene059426	0.837801	4.19E-57	-1.69E-46
MS.gene053538	MS.gene059426	0.836541	8.81E-57	-1.69E-46
MS.gene054584	MS.gene059426	0.806905	6.56E-50	-1.69E-46
MS.gene055465	MS.gene059426	0.817265	3.61E-52	-1.69E-46
MS.gene055469	MS.gene059426	0.813743	2.19E-51	-1.69E-46
MS.gene055537	MS.gene059426	0.815638	8.34E-52	-1.69E-46
MS.gene055764	MS.gene059426	0.80549	1.30E-49	-1.69E-46
MS.gene058087	MS.gene059426	0.807117	5.91E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene059426.t1	MTR_4g085570	95.161	124	6	0	1	124	306	429	7.40e-75	238
MS.gene059426.t1	MTR_4g085570	95.161	124	6	0	1	124	306	429	1.93e-74	238
MS.gene059426.t1	MTR_4g094848	42.276	123	69	1	1	123	212	332	1.01e-14	69.7
MS.gene059426.t1	MTR_4g094848	42.276	123	69	1	1	123	324	444	1.05e-14	69.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene059426.t1	AT2G23360	40.000	125	70	3	1	123	299	420	4.96e-14	67.8

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Find 23 sgRNAs with CRISPR-Local

Find 24 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAGCATCCAGGTTGTCAC+AGG	0.541203	4.3:-27227394	MS.gene059426:CDS
AATCTCAGCCTGTGACAACC+TGG	0.488184	4.3:+27227386	None:intergenic
ACAAGTCCATGGAGCTAGCA+AGG	0.566040	4.3:-27227338	MS.gene059426:CDS
ACATATACAGGATATGGATG+AGG	0.569404	4.3:-27227490	None:intergenic
ACTTGAACATTTACGTGTTT+CGG	0.357826	4.3:-27227211	MS.gene059426:CDS
AGCTCAGGACATGTACTCTA+TGG	0.392566	4.3:-27227154	MS.gene059426:CDS
AGGCTATCTCTTCTGGATCC+TGG	0.342477	4.3:-27227254	MS.gene059426:CDS
ATAACACCTTGCTAGCTCCA+TGG	0.573593	4.3:+27227332	None:intergenic
ATGTCAAAATTTGACATTGA+AGG	0.437532	4.3:+27227291	None:intergenic
CAATAAAGCCATAGAAGCTC+AGG	0.475405	4.3:-27227169	MS.gene059426:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACTTGAACATTTACGTGTTT+CGG	-	chr4.3:27227388-27227407	MS.gene059426:CDS	30.0%
GGATTCTTCAAGATTATGTA+TGG	-	chr4.3:27227179-27227198	MS.gene059426:CDS	30.0%
AACGAGAAAAACTCTGAACT+AGG	-	chr4.3:27227158-27227177	MS.gene059426:CDS	35.0%
GAAGGAAGTTCATTTGATGT+AGG	+	chr4.3:27227293-27227312	None:intergenic	35.0%
CAATAAAGCCATAGAAGCTC+AGG	-	chr4.3:27227430-27227449	MS.gene059426:CDS	40.0%
TGAACATTTACGTGTTTCGG+AGG	-	chr4.3:27227391-27227410	MS.gene059426:CDS	40.0%
TGTTTCGGAGGCTAAAATTC+AGG	-	chr4.3:27227403-27227422	MS.gene059426:CDS	40.0%
AGCTCAGGACATGTACTCTA+TGG	-	chr4.3:27227445-27227464	MS.gene059426:CDS	45.0%
ATAACACCTTGCTAGCTCCA+TGG	+	chr4.3:27227270-27227289	None:intergenic	45.0%
GATGATGAGGCTATCTCTTC+TGG	-	chr4.3:27227338-27227357	MS.gene059426:CDS	45.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.3	gene	27227122	27227499	27227122	ID=MS.gene059426
chr4.3	mRNA	27227122	27227499	27227122	ID=MS.gene059426.t1;Parent=MS.gene059426
chr4.3	exon	27227122	27227499	27227122	ID=MS.gene059426.t1.exon1;Parent=MS.gene059426.t1
chr4.3	CDS	27227122	27227499	27227122	ID=cds.MS.gene059426.t1;Parent=MS.gene059426.t1

Gene Sequence	>MS.gene059426 ATGGATGAGGAAAACAAGGCTCTCAAAAGAATTTTAAACGAGAAAAACTCTGAACTAGGATTCTTCAAGATTATGTATGGTGAAACAGCATCCAGGTTGTCACAGGCTGAGATTCTTCTTCGAAAGTTTTCTGAAAATTACAAGTCCATGGAGCTAGCAAGGTGTTATCCTACATCAAATGAACTTCCTTCAATGTCAAATTTTGACATTTCTAGTGATGATGAGGCTATCTCTTCTGGATCCTGGGCAAATGCTCTTATTTCGGAACTTGAACATTTACGTGTTTCGGAGGCTAAAATTCAGGAGAACAATAAAGCCATAGAAGCTCAGGACATGTACTCTATGGATGATTTTGTTGAGATGGAGAAAAGGCTATAG
Protein sequence	>MS.gene059426.t1 MDEENKALKRILNEKNSELGFFKIMYGETASRLSQAEILLRKFSENYKSMELARCYPTSNELPSMSNFDISSDDEAISSGSWANALISELEHLRVSEAKIQENNKAIEAQDMYSMDDFVEMEKRL