Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27712.t1 | XP_003623909.1 | 96.4 | 251 | 1 | 1 | 1 | 251 | 1 | 243 | 1.00E-130 | 476.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27712.t1 | Q9LX74 | 67.3 | 251 | 70 | 2 | 1 | 251 | 1 | 239 | 1.1e-93 | 344.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27712.t1 | G7L3K7 | 96.4 | 251 | 1 | 1 | 1 | 251 | 1 | 243 | 7.3e-131 | 476.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene27712 | MS.gene072735 | PPI |
| MS.gene27712 | MS.gene55323 | PPI |
| MS.gene27712 | MS.gene053057 | PPI |
| MS.gene85900 | MS.gene27712 | PPI |
| MS.gene27712 | MS.gene024674 | PPI |
| MS.gene27712 | MS.gene22316 | PPI |
| MS.gene27712 | MS.gene023131 | PPI |
| MS.gene21656 | MS.gene27712 | PPI |
| MS.gene27712 | MS.gene032627 | PPI |
| MS.gene27712 | MS.gene028322 | PPI |
| MS.gene27712 | MS.gene53118 | PPI |
| MS.gene27712 | MS.gene78555 | PPI |
| MS.gene82830 | MS.gene27712 | PPI |
| MS.gene27712 | MS.gene36469 | PPI |
| MS.gene27712 | MS.gene35136 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27712.t1 | MTR_7g076910 | 96.414 | 251 | 1 | 1 | 1 | 251 | 1 | 243 | 0.0 | 496 |
| MS.gene27712.t1 | MTR_7g116920 | 29.082 | 196 | 111 | 7 | 5 | 189 | 10 | 188 | 1.49e-16 | 76.6 |
| MS.gene27712.t1 | MTR_4g058720 | 32.353 | 170 | 99 | 4 | 5 | 168 | 33 | 192 | 3.49e-16 | 76.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27712.t1 | AT3G46210 | 67.347 | 245 | 72 | 1 | 1 | 245 | 1 | 237 | 1.14e-126 | 359 |
| MS.gene27712.t1 | AT3G46210 | 67.347 | 245 | 72 | 1 | 1 | 245 | 1 | 237 | 1.14e-126 | 359 |
| MS.gene27712.t1 | AT3G46210 | 67.347 | 245 | 72 | 1 | 1 | 245 | 1 | 237 | 1.14e-126 | 359 |
| MS.gene27712.t1 | AT3G46210 | 67.347 | 245 | 72 | 1 | 1 | 245 | 1 | 237 | 1.14e-126 | 359 |
| MS.gene27712.t1 | AT3G46210 | 67.347 | 245 | 72 | 1 | 1 | 245 | 1 | 237 | 1.14e-126 | 359 |
| MS.gene27712.t1 | AT3G46210 | 67.347 | 245 | 72 | 1 | 1 | 245 | 1 | 237 | 1.14e-126 | 359 |
| MS.gene27712.t1 | AT3G46210 | 67.347 | 245 | 72 | 1 | 1 | 245 | 1 | 237 | 1.14e-126 | 359 |
| MS.gene27712.t1 | AT3G61620 | 30.102 | 196 | 109 | 5 | 5 | 189 | 10 | 188 | 9.28e-21 | 88.2 |
| MS.gene27712.t1 | AT3G61620 | 30.102 | 196 | 109 | 5 | 5 | 189 | 10 | 188 | 9.28e-21 | 88.2 |
| MS.gene27712.t1 | AT2G07110 | 42.500 | 120 | 43 | 4 | 22 | 123 | 8 | 119 | 1.62e-19 | 82.8 |
| MS.gene27712.t1 | AT4G27490 | 31.034 | 174 | 104 | 4 | 1 | 168 | 30 | 193 | 9.89e-16 | 74.7 |
| MS.gene27712.t1 | AT4G27490 | 31.034 | 174 | 104 | 4 | 1 | 168 | 30 | 193 | 9.89e-16 | 74.7 |
| MS.gene27712.t1 | AT4G27490 | 31.034 | 174 | 104 | 4 | 1 | 168 | 30 | 193 | 9.89e-16 | 74.7 |
| MS.gene27712.t1 | AT4G27490 | 31.214 | 173 | 98 | 5 | 1 | 161 | 30 | 193 | 3.95e-14 | 69.3 |
| MS.gene27712.t1 | AT4G27490 | 31.214 | 173 | 98 | 5 | 1 | 161 | 30 | 193 | 3.95e-14 | 69.3 |
| MS.gene27712.t1 | AT4G27490 | 31.214 | 173 | 98 | 5 | 1 | 161 | 30 | 193 | 3.95e-14 | 69.3 |
Find 74 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGCATCCATTGAAGTTATT+TGG | 0.147111 | 7.2:-28876933 | MS.gene27712:CDS |
| ACGACAGAAACAGTTGTATT+TGG | 0.247781 | 7.2:+28875014 | None:intergenic |
| TTCTTCTTGGTTCCGGCTTT+AGG | 0.251170 | 7.2:+28876970 | None:intergenic |
| AAAGTTCTGGCTGCAGTTTA+TGG | 0.252618 | 7.2:-28876994 | MS.gene27712:CDS |
| AACTACCAGCCAGATGTCTT+AGG | 0.259410 | 7.2:+28876203 | None:intergenic |
| AGATAGTAATTCTATTATAT+TGG | 0.304530 | 7.2:-28876077 | MS.gene27712:CDS |
| CCCACCTGCGATGATTTCTC+TGG | 0.322492 | 7.2:+28874990 | None:intergenic |
| GATGCCTCACGGGTAGATTT+CGG | 0.365115 | 7.2:+28874642 | None:intergenic |
| TTGTGGCTCGACCTCGTTCT+AGG | 0.377815 | 7.2:+28874703 | None:intergenic |
| CAGATGTCTTAGGGGTATTC+CGG | 0.385906 | 7.2:+28876213 | None:intergenic |
| AGCTAGCGGCCTCAGTTGAT+TGG | 0.391159 | 7.2:+28877077 | None:intergenic |
| TGACCAACGTGTCCTGTATT+AGG | 0.391932 | 7.2:+28876907 | None:intergenic |
| AGCCCATGTGGCTGAGCCAT+GGG | 0.403802 | 7.2:+28877029 | None:intergenic |
| GAGCCCATGTGGCTGAGCCA+TGG | 0.423357 | 7.2:+28877028 | None:intergenic |
| CGCAGCATGCGCTGCACTTG+TGG | 0.433168 | 7.2:-28876239 | MS.gene27712:CDS |
| AGGCTTCCAAATAACTTCAA+TGG | 0.433202 | 7.2:+28876927 | None:intergenic |
| TAGAGTTAATGAACTAAAGA+AGG | 0.449675 | 7.2:+28876772 | None:intergenic |
| ACTACCAGCCAGATGTCTTA+GGG | 0.452227 | 7.2:+28876204 | None:intergenic |
| CCTTGGAAAGCATCTGCATT+CGG | 0.454022 | 7.2:-28876849 | MS.gene27712:CDS |
| CTGAGCCATGGGCTCGGTGG+AGG | 0.456856 | 7.2:+28877040 | None:intergenic |
| GTTATTTGGAAGCCTAATAC+AGG | 0.457823 | 7.2:-28876919 | MS.gene27712:CDS |
| CGGAATACCCCTAAGACATC+TGG | 0.460572 | 7.2:-28876212 | MS.gene27712:CDS |
| TGATTGGGACTCCTTCCATC+AGG | 0.463824 | 7.2:+28877093 | None:intergenic |
| TCAAGGAGAAACGAAAGTTC+TGG | 0.467660 | 7.2:-28877007 | MS.gene27712:CDS |
| GTTACACATGGTGCTATGTC+AGG | 0.475311 | 7.2:-28874933 | MS.gene27712:intron |
| GCTAGCGGCCTCAGTTGATT+GGG | 0.478093 | 7.2:+28877078 | None:intergenic |
| TGCGCTGCACTTGTGGATGC+CGG | 0.480910 | 7.2:-28876232 | MS.gene27712:CDS |
| ACACGTTGGTCAAGCGGATA+GGG | 0.485898 | 7.2:-28876896 | MS.gene27712:CDS |
| GAGCCCATGGCTCAGCCACA+TGG | 0.487003 | 7.2:-28877032 | MS.gene27712:CDS |
| ATGTGGCTGAGCCATGGGCT+CGG | 0.490093 | 7.2:+28877034 | None:intergenic |
| CTCGACCTCGTTCTAGGCAA+TGG | 0.492493 | 7.2:+28874709 | None:intergenic |
| CATGCTGCGTTTATTGCACA+TGG | 0.494278 | 7.2:+28876253 | None:intergenic |
| ACCCGTGAGGCATCTAAAGC+TGG | 0.495442 | 7.2:-28874633 | MS.gene27712:CDS |
| CCACCTGCGATGATTTCTCT+GGG | 0.505308 | 7.2:+28874991 | None:intergenic |
| ATAACAGAAGTGGTGGTGTT+GGG | 0.507112 | 7.2:+28876817 | None:intergenic |
| TATAACAGAAGTGGTGGTGT+TGG | 0.507986 | 7.2:+28876816 | None:intergenic |
| TCTGTCCTCCACCGAGCCCA+TGG | 0.508453 | 7.2:-28877045 | MS.gene27712:CDS |
| AAGGAAGTGAGAAACTTGCC+TGG | 0.522885 | 7.2:+28876791 | None:intergenic |
| TTCAGACAACCTTTGAGTTG+TGG | 0.523471 | 7.2:+28874686 | None:intergenic |
| GGCTCAGCCACATGGGCTCA+AGG | 0.541331 | 7.2:-28877024 | MS.gene27712:CDS |
| GGCAATGATCCCATGGCACA+TGG | 0.547489 | 7.2:-28874969 | MS.gene27712:CDS |
| CCGAATGCAGATGCTTTCCA+AGG | 0.550779 | 7.2:+28876849 | None:intergenic |
| AATGATATTGAAGAAAACCT+TGG | 0.551446 | 7.2:-28876866 | MS.gene27712:CDS |
| GACACGTTGGTCAAGCGGAT+AGG | 0.555141 | 7.2:-28876897 | MS.gene27712:CDS |
| CACCACTTCTGTTATAGTCC+AGG | 0.556325 | 7.2:-28876809 | MS.gene27712:CDS |
| CGTTTCTCCTTGAGCCCATG+TGG | 0.561291 | 7.2:+28877017 | None:intergenic |
| TACAGGACACGTTGGTCAAG+CGG | 0.571194 | 7.2:-28876902 | MS.gene27712:CDS |
| TCCAGCTTTAGATGCCTCAC+GGG | 0.572670 | 7.2:+28874632 | None:intergenic |
| ATGGAGATAGACAGACCTGA+TGG | 0.574980 | 7.2:-28877108 | MS.gene27712:CDS |
| CTACCAGCCAGATGTCTTAG+GGG | 0.575469 | 7.2:+28876205 | None:intergenic |
| ATCCAGCTTTAGATGCCTCA+CGG | 0.578738 | 7.2:+28874631 | None:intergenic |
| AGCCCATGGCTCAGCCACAT+GGG | 0.579426 | 7.2:-28877031 | MS.gene27712:CDS |
| GCAGTTTATGGACCTAAAGC+CGG | 0.580294 | 7.2:-28876982 | MS.gene27712:CDS |
| CCCAGAGAAATCATCGCAGG+TGG | 0.588936 | 7.2:-28874991 | MS.gene27712:CDS |
| AGGATACAGCACCATCGTCA+TGG | 0.589637 | 7.2:+28876663 | None:intergenic |
| TGGCTGAGCCATGGGCTCGG+TGG | 0.606885 | 7.2:+28877037 | None:intergenic |
| CGTCCCAGAGAAATCATCGC+AGG | 0.615491 | 7.2:-28874994 | MS.gene27712:CDS |
| GCAGGTGGGCAATGATCCCA+TGG | 0.615551 | 7.2:-28874976 | MS.gene27712:CDS |
| GTGATGATTCCATGTGCCAT+GGG | 0.621550 | 7.2:+28874960 | None:intergenic |
| TGCCTGGACTATAACAGAAG+TGG | 0.625114 | 7.2:+28876807 | None:intergenic |
| TGTGATGATTCCATGTGCCA+TGG | 0.630250 | 7.2:+28874959 | None:intergenic |
| ATACCCCTAAGACATCTGGC+TGG | 0.638185 | 7.2:-28876208 | MS.gene27712:intron |
| GAGGTCGAGCCACAACTCAA+AGG | 0.639777 | 7.2:-28874695 | MS.gene27712:CDS |
| AGATAGACAGACCTGATGGA+AGG | 0.649068 | 7.2:-28877104 | MS.gene27712:CDS |
| GACCTCGTTCTAGGCAATGG+AGG | 0.657340 | 7.2:+28874712 | None:intergenic |
| CCAGAGAAATCATCGCAGGT+GGG | 0.670584 | 7.2:-28874990 | MS.gene27712:CDS |
| ATCATCACATCTGTTACACA+TGG | 0.674266 | 7.2:-28874945 | MS.gene27712:CDS |
| ACAGAATGAGAGCAAGCTAG+CGG | 0.683024 | 7.2:+28877063 | None:intergenic |
| TACCTCCATTGCCTAGAACG+AGG | 0.684298 | 7.2:-28874714 | MS.gene27712:CDS |
| CTGGACTATAACAGAAGTGG+TGG | 0.690960 | 7.2:+28876810 | None:intergenic |
| ATGCAGGTTGTCCATGACGA+TGG | 0.698133 | 7.2:-28876674 | MS.gene27712:intron |
| GAAGGAGTCCCAATCAACTG+AGG | 0.713387 | 7.2:-28877086 | MS.gene27712:CDS |
| AAGCCTAATACAGGACACGT+TGG | 0.717877 | 7.2:-28876910 | MS.gene27712:CDS |
| AGCACCGAAATCTACCCGTG+AGG | 0.734921 | 7.2:-28874646 | MS.gene27712:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTAGAATTGAATTAAAT+AGG | + | chr7.2:28875097-28875116 | None:intergenic | 10.0% |
| !! | TTGACAAAAAAAAAAAAAAA+AGG | + | chr7.2:28875719-28875738 | None:intergenic | 10.0% |
| !! | ACATAAAAATACTATATGTT+GGG | + | chr7.2:28876365-28876384 | None:intergenic | 15.0% |
| !! | AGATAGTAATTCTATTATAT+TGG | - | chr7.2:28875660-28875679 | MS.gene27712:intron | 15.0% |
| !! | TATTAAGTATTAATATCTTC+AGG | + | chr7.2:28875411-28875430 | None:intergenic | 15.0% |
| !!! | TTAAGATTGTTATTTTAGTT+TGG | - | chr7.2:28875153-28875172 | MS.gene27712:intron | 15.0% |
| !!! | TTTTATTTTATTTGTGTATG+TGG | - | chr7.2:28875013-28875032 | MS.gene27712:CDS | 15.0% |
| !! | AATGGTTGAAATAAATGAAA+TGG | - | chr7.2:28875851-28875870 | MS.gene27712:intron | 20.0% |
| !! | ATACTTAATAATTGTGTTTC+TGG | - | chr7.2:28875421-28875440 | MS.gene27712:intron | 20.0% |
| !! | ATATTCAATTGTATATTGCA+AGG | - | chr7.2:28876329-28876348 | MS.gene27712:intron | 20.0% |
| !! | GACATAAAAATACTATATGT+TGG | + | chr7.2:28876366-28876385 | None:intergenic | 20.0% |
| !! | TATAGTAACATTTATCATAC+AGG | + | chr7.2:28875912-28875931 | None:intergenic | 20.0% |
| !! | TGTATTTGGAAAAACTAAAT+AGG | + | chr7.2:28876712-28876731 | None:intergenic | 20.0% |
| !!! | CAAAGTTCTAAAAAAGTAAA+AGG | + | chr7.2:28875292-28875311 | None:intergenic | 20.0% |
| !!! | TTACTTTTTTAGAACTTTGA+AGG | - | chr7.2:28875293-28875312 | MS.gene27712:intron | 20.0% |
| !!! | TTCTGTTTAATTTCTTTTAG+TGG | - | chr7.2:28876995-28877014 | MS.gene27712:CDS | 20.0% |
| ! | AAAATCTTGAGTTCTTAGTT+AGG | - | chr7.2:28875176-28875195 | MS.gene27712:intron | 25.0% |
| ! | AAATAACACATCTCTAAACA+AGG | - | chr7.2:28876564-28876583 | MS.gene27712:intron | 25.0% |
| ! | AACATTTATCATACAGGAAA+GGG | + | chr7.2:28875906-28875925 | None:intergenic | 25.0% |
| ! | AATGATATTGAAGAAAACCT+TGG | - | chr7.2:28874871-28874890 | MS.gene27712:intron | 25.0% |
| ! | AGTTAGGATATCAATCATTA+TGG | - | chr7.2:28875192-28875211 | MS.gene27712:intron | 25.0% |
| ! | CAAATAAGTTGTCAACTAAA+TGG | - | chr7.2:28876535-28876554 | MS.gene27712:intron | 25.0% |
| ! | TAACATTTATCATACAGGAA+AGG | + | chr7.2:28875907-28875926 | None:intergenic | 25.0% |
| ! | TAGACTTACAAAGAAAAAGT+AGG | + | chr7.2:28876508-28876527 | None:intergenic | 25.0% |
| ! | TAGAGTTAATGAACTAAAGA+AGG | + | chr7.2:28874968-28874987 | None:intergenic | 25.0% |
| ! | TTGTATATTGCAAGGTTTAT+TGG | - | chr7.2:28876337-28876356 | MS.gene27712:intron | 25.0% |
| !! | AAATCGTGTAATAGAGTATT+AGG | + | chr7.2:28876923-28876942 | None:intergenic | 25.0% |
| !! | CAATTATTATGTTTTCCAAC+TGG | - | chr7.2:28875245-28875264 | MS.gene27712:intron | 25.0% |
| !!! | ACTTTTTCTTTGTAAGTCTA+TGG | - | chr7.2:28876508-28876527 | MS.gene27712:intron | 25.0% |
| !!! | CATTTATGATGAAGCATTTT+AGG | - | chr7.2:28875816-28875835 | MS.gene27712:intron | 25.0% |
| !!! | TTGTTTCTATATTCATGTCT+CGG | - | chr7.2:28876592-28876611 | MS.gene27712:intron | 25.0% |
| !!! | TTTTTTTATCACAAGAACAG+TGG | - | chr7.2:28875382-28875401 | MS.gene27712:intron | 25.0% |
| AAGCATCCATTGAAGTTATT+TGG | - | chr7.2:28874804-28874823 | MS.gene27712:intron | 30.0% | |
| AATTACTTTGACATCCTTTG+AGG | - | chr7.2:28876002-28876021 | MS.gene27712:intron | 30.0% | |
| ATTTCATAGAATCCATCTGT+AGG | - | chr7.2:28876939-28876958 | MS.gene27712:CDS | 30.0% | |
| CTGTGAAAAACAGAAACATA+AGG | + | chr7.2:28876895-28876914 | None:intergenic | 30.0% | |
| CTTTGCATACTAGAAATAGA+TGG | - | chr7.2:28876091-28876110 | MS.gene27712:CDS | 30.0% | |
| GTTCATTAACTCTAACTACT+TGG | - | chr7.2:28874974-28874993 | MS.gene27712:CDS | 30.0% | |
| TAGAAAATCAAACCTACAGA+TGG | + | chr7.2:28876954-28876973 | None:intergenic | 30.0% | |
| TATTTCAACCATTATCCACA+GGG | + | chr7.2:28875844-28875863 | None:intergenic | 30.0% | |
| TTAGGTTAATCAAACCTCAA+AGG | + | chr7.2:28876019-28876038 | None:intergenic | 30.0% | |
| TTATTTCAACCATTATCCAC+AGG | + | chr7.2:28875845-28875864 | None:intergenic | 30.0% | |
| ! | AAAGGTTGTCTGAATTTTTG+AGG | - | chr7.2:28877060-28877079 | MS.gene27712:CDS | 30.0% |
| ! | ATTTTCATTCTTCTTGGTTC+CGG | + | chr7.2:28874777-28874796 | None:intergenic | 30.0% |
| ! | GAACTTTGAAGGAACAAAAT+AGG | - | chr7.2:28875304-28875323 | MS.gene27712:intron | 30.0% |
| ! | GTTTTACAGTAAAAGCAGTT+AGG | + | chr7.2:28876037-28876056 | None:intergenic | 30.0% |
| ! | TTCTGGATTTTCATTCTTCT+TGG | + | chr7.2:28874783-28874802 | None:intergenic | 30.0% |
| !! | ACTTGTTGGTTATTGTCTTT+TGG | - | chr7.2:28875560-28875579 | MS.gene27712:intron | 30.0% |
| !! | CATGAACTTTTTCTTAGATC+AGG | + | chr7.2:28876290-28876309 | None:intergenic | 30.0% |
| !!! | TTCCTTAGGATTTTAGTTTC+TGG | - | chr7.2:28875221-28875240 | MS.gene27712:intron | 30.0% |
| AAGTATCACAGACAGAATCA+TGG | + | chr7.2:28876165-28876184 | None:intergenic | 35.0% | |
| ACAGAAACATAAGGAACACT+TGG | + | chr7.2:28876886-28876905 | None:intergenic | 35.0% | |
| ACGACAGAAACAGTTGTATT+TGG | + | chr7.2:28876726-28876745 | None:intergenic | 35.0% | |
| AGGCTTCCAAATAACTTCAA+TGG | + | chr7.2:28874813-28874832 | None:intergenic | 35.0% | |
| AGTATCACAGACAGAATCAT+GGG | + | chr7.2:28876164-28876183 | None:intergenic | 35.0% | |
| ATCATCACATCTGTTACACA+TGG | - | chr7.2:28876792-28876811 | MS.gene27712:CDS | 35.0% | |
| ATGTCACAAGCTCATAAACA+AGG | - | chr7.2:28876381-28876400 | MS.gene27712:intron | 35.0% | |
| CATTACTTGCAACATCAATG+AGG | + | chr7.2:28875948-28875967 | None:intergenic | 35.0% | |
| CGTACATGAAGCTAACTAAT+TGG | - | chr7.2:28876225-28876244 | MS.gene27712:CDS | 35.0% | |
| CTTCACAGTAAATATGCATC+TGG | + | chr7.2:28876138-28876157 | None:intergenic | 35.0% | |
| GAATTGCATACAAGCAACAT+CGG | + | chr7.2:28876644-28876663 | None:intergenic | 35.0% | |
| GACCAGAAACTAAAATCCTA+AGG | + | chr7.2:28875226-28875245 | None:intergenic | 35.0% | |
| GAGAGAAAGTTGTCACAAAA+TGG | + | chr7.2:28876427-28876446 | None:intergenic | 35.0% | |
| GTTATTTGGAAGCCTAATAC+AGG | - | chr7.2:28874818-28874837 | MS.gene27712:intron | 35.0% | |
| TCTGGTTATCCAACTCAAAT+AGG | + | chr7.2:28876120-28876139 | None:intergenic | 35.0% | |
| TGACTGAATTCACTAGACAT+GGG | + | chr7.2:28875767-28875786 | None:intergenic | 35.0% | |
| TGTCACAAGCTCATAAACAA+GGG | - | chr7.2:28876382-28876401 | MS.gene27712:intron | 35.0% | |
| TTTCTATATTCATGTCTCGG+TGG | - | chr7.2:28876595-28876614 | MS.gene27712:intron | 35.0% | |
| ! | TATTATGTTTTCCAACTGGC+TGG | - | chr7.2:28875249-28875268 | MS.gene27712:intron | 35.0% |
| !! | GAACATTCTGTTTCTAATGC+AGG | - | chr7.2:28875047-28875066 | MS.gene27712:CDS | 35.0% |
| !!! | ACTTCAATGGATGCTTTTTC+TGG | + | chr7.2:28874800-28874819 | None:intergenic | 35.0% |
| AGATGGCTTCCTATTTGAGT+TGG | - | chr7.2:28876108-28876127 | MS.gene27712:intron | 40.0% | |
| ATACAAGCAACATCGGATCA+AGG | + | chr7.2:28876637-28876656 | None:intergenic | 40.0% | |
| CATTATGGCATGTGTTCCTT+AGG | - | chr7.2:28875207-28875226 | MS.gene27712:intron | 40.0% | |
| CTGACTGAATTCACTAGACA+TGG | + | chr7.2:28875768-28875787 | None:intergenic | 40.0% | |
| GACTGAATTCACTAGACATG+GGG | + | chr7.2:28875766-28875785 | None:intergenic | 40.0% | |
| TCAAGGAGAAACGAAAGTTC+TGG | - | chr7.2:28874730-28874749 | MS.gene27712:intron | 40.0% | |
| TCATGTACGCACGTGAATAT+TGG | + | chr7.2:28876214-28876233 | None:intergenic | 40.0% | |
| TTTAGGTACCCTGTGGATAA+TGG | - | chr7.2:28875833-28875852 | MS.gene27712:intron | 40.0% | |
| ! | AAAGTTCTGGCTGCAGTTTA+TGG | - | chr7.2:28874743-28874762 | MS.gene27712:intron | 40.0% |
| ! | ATAACAGAAGTGGTGGTGTT+GGG | + | chr7.2:28874923-28874942 | None:intergenic | 40.0% |
| ! | GAAGCTAACTAATTGGTGTC+TGG | - | chr7.2:28876232-28876251 | MS.gene27712:CDS | 40.0% |
| ! | TATAACAGAAGTGGTGGTGT+TGG | + | chr7.2:28874924-28874943 | None:intergenic | 40.0% |
| !! | TTCAGACAACCTTTGAGTTG+TGG | + | chr7.2:28877054-28877073 | None:intergenic | 40.0% |
| !!! | ACCTCCTCTTCTTTTTTGGA+AGG | + | chr7.2:28875688-28875707 | None:intergenic | 40.0% |
| !!! | ACGAACCTCCTCTTCTTTTT+TGG | + | chr7.2:28875692-28875711 | None:intergenic | 40.0% |
| !!! | CCTCCTCTTCTTTTTTGGAA+GGG | + | chr7.2:28875687-28875706 | None:intergenic | 40.0% |
| AACTACCAGCCAGATGTCTT+AGG | + | chr7.2:28875537-28875556 | None:intergenic | 45.0% | |
| AAGCCTAATACAGGACACGT+TGG | - | chr7.2:28874827-28874846 | MS.gene27712:intron | 45.0% | |
| AAGGAAGTGAGAAACTTGCC+TGG | + | chr7.2:28874949-28874968 | None:intergenic | 45.0% | |
| ACAGAATGAGAGCAAGCTAG+CGG | + | chr7.2:28874677-28874696 | None:intergenic | 45.0% | |
| ACTACCAGCCAGATGTCTTA+GGG | + | chr7.2:28875536-28875555 | None:intergenic | 45.0% | |
| AGATAGACAGACCTGATGGA+AGG | - | chr7.2:28874633-28874652 | MS.gene27712:CDS | 45.0% | |
| ATCAGGCATGCGATGTCTAT+TGG | + | chr7.2:28876273-28876292 | None:intergenic | 45.0% | |
| ATGGAGATAGACAGACCTGA+TGG | - | chr7.2:28874629-28874648 | MS.gene27712:CDS | 45.0% | |
| CACCACTTCTGTTATAGTCC+AGG | - | chr7.2:28874928-28874947 | MS.gene27712:intron | 45.0% | |
| CATGCTGCGTTTATTGCACA+TGG | + | chr7.2:28875487-28875506 | None:intergenic | 45.0% | |
| CCCTTCCAAAAAAGAAGAGG+AGG | - | chr7.2:28875684-28875703 | MS.gene27712:intron | 45.0% | |
| CTGGACTATAACAGAAGTGG+TGG | + | chr7.2:28874930-28874949 | None:intergenic | 45.0% | |
| GCAGTTTATGGACCTAAAGC+CGG | - | chr7.2:28874755-28874774 | MS.gene27712:intron | 45.0% | |
| GGACCCTTCCAAAAAAGAAG+AGG | - | chr7.2:28875681-28875700 | MS.gene27712:intron | 45.0% | |
| GGCTGGTAGTTGAAACTTGT+TGG | - | chr7.2:28875546-28875565 | MS.gene27712:intron | 45.0% | |
| GTGATGATTCCATGTGCCAT+GGG | + | chr7.2:28876780-28876799 | None:intergenic | 45.0% | |
| TGACCAACGTGTCCTGTATT+AGG | + | chr7.2:28874833-28874852 | None:intergenic | 45.0% | |
| TGCCTGGACTATAACAGAAG+TGG | + | chr7.2:28874933-28874952 | None:intergenic | 45.0% | |
| TGTGATGATTCCATGTGCCA+TGG | + | chr7.2:28876781-28876800 | None:intergenic | 45.0% | |
| TTCTTCTTGGTTCCGGCTTT+AGG | + | chr7.2:28874770-28874789 | None:intergenic | 45.0% | |
| !! | ATCCAGCTTTAGATGCCTCA+CGG | + | chr7.2:28877109-28877128 | None:intergenic | 45.0% |
| !! | CAGATGTCTTAGGGGTATTC+CGG | + | chr7.2:28875527-28875546 | None:intergenic | 45.0% |
| !! | CCTTGGAAAGCATCTGCATT+CGG | - | chr7.2:28874888-28874907 | MS.gene27712:intron | 45.0% |
| !! | GAAGCATTTTAGGTACCCTG+TGG | - | chr7.2:28875826-28875845 | MS.gene27712:intron | 45.0% |
| !! | GTTACACATGGTGCTATGTC+AGG | - | chr7.2:28876804-28876823 | MS.gene27712:CDS | 45.0% |
| ACACGTTGGTCAAGCGGATA+GGG | - | chr7.2:28874841-28874860 | MS.gene27712:intron | 50.0% | |
| AGGATACAGCACCATCGTCA+TGG | + | chr7.2:28875077-28875096 | None:intergenic | 50.0% | |
| ATACCCCTAAGACATCTGGC+TGG | - | chr7.2:28875529-28875548 | MS.gene27712:intron | 50.0% | |
| ATGCAGGTTGTCCATGACGA+TGG | - | chr7.2:28875063-28875082 | MS.gene27712:intron | 50.0% | |
| CCACCTGCGATGATTTCTCT+GGG | + | chr7.2:28876749-28876768 | None:intergenic | 50.0% | |
| CCAGAGAAATCATCGCAGGT+GGG | - | chr7.2:28876747-28876766 | MS.gene27712:intron | 50.0% | |
| CCGAATGCAGATGCTTTCCA+AGG | + | chr7.2:28874891-28874910 | None:intergenic | 50.0% | |
| CGGAATACCCCTAAGACATC+TGG | - | chr7.2:28875525-28875544 | MS.gene27712:intron | 50.0% | |
| CTACCAGCCAGATGTCTTAG+GGG | + | chr7.2:28875535-28875554 | None:intergenic | 50.0% | |
| CTTCATGTCTTCCAGCCAGT+TGG | + | chr7.2:28875263-28875282 | None:intergenic | 50.0% | |
| GAAGGAGTCCCAATCAACTG+AGG | - | chr7.2:28874651-28874670 | MS.gene27712:CDS | 50.0% | |
| GATGCCTCACGGGTAGATTT+CGG | + | chr7.2:28877098-28877117 | None:intergenic | 50.0% | |
| TACAGGACACGTTGGTCAAG+CGG | - | chr7.2:28874835-28874854 | MS.gene27712:intron | 50.0% | |
| TACCTCCATTGCCTAGAACG+AGG | - | chr7.2:28877023-28877042 | MS.gene27712:CDS | 50.0% | |
| TGATTGGGACTCCTTCCATC+AGG | + | chr7.2:28874647-28874666 | None:intergenic | 50.0% | |
| !! | TCCAGCTTTAGATGCCTCAC+GGG | + | chr7.2:28877108-28877127 | None:intergenic | 50.0% |
| AGCTAGCGGCCTCAGTTGAT+TGG | + | chr7.2:28874663-28874682 | None:intergenic | 55.0% | |
| CCCACCTGCGATGATTTCTC+TGG | + | chr7.2:28876750-28876769 | None:intergenic | 55.0% | |
| CCCAGAGAAATCATCGCAGG+TGG | - | chr7.2:28876746-28876765 | MS.gene27712:intron | 55.0% | |
| CGTCCCAGAGAAATCATCGC+AGG | - | chr7.2:28876743-28876762 | MS.gene27712:intron | 55.0% | |
| CGTTTCTCCTTGAGCCCATG+TGG | + | chr7.2:28874723-28874742 | None:intergenic | 55.0% | |
| GACACGTTGGTCAAGCGGAT+AGG | - | chr7.2:28874840-28874859 | MS.gene27712:intron | 55.0% | |
| GAGGTCGAGCCACAACTCAA+AGG | - | chr7.2:28877042-28877061 | MS.gene27712:CDS | 55.0% | |
| GCTAGCGGCCTCAGTTGATT+GGG | + | chr7.2:28874662-28874681 | None:intergenic | 55.0% | |
| GGCAATGATCCCATGGCACA+TGG | - | chr7.2:28876768-28876787 | MS.gene27712:intron | 55.0% | |
| TTGTGGCTCGACCTCGTTCT+AGG | + | chr7.2:28877037-28877056 | None:intergenic | 55.0% | |
| ! | ACCCGTGAGGCATCTAAAGC+TGG | - | chr7.2:28877104-28877123 | MS.gene27712:CDS | 55.0% |
| ! | AGCACCGAAATCTACCCGTG+AGG | - | chr7.2:28877091-28877110 | MS.gene27712:CDS | 55.0% |
| ! | CTCGACCTCGTTCTAGGCAA+TGG | + | chr7.2:28877031-28877050 | None:intergenic | 55.0% |
| ! | GACCTCGTTCTAGGCAATGG+AGG | + | chr7.2:28877028-28877047 | None:intergenic | 55.0% |
| AGCCCATGGCTCAGCCACAT+GGG | - | chr7.2:28874706-28874725 | MS.gene27712:CDS | 60.0% | |
| AGCCCATGTGGCTGAGCCAT+GGG | + | chr7.2:28874711-28874730 | None:intergenic | 60.0% | |
| ATGTGGCTGAGCCATGGGCT+CGG | + | chr7.2:28874706-28874725 | None:intergenic | 60.0% | |
| GCAGGTGGGCAATGATCCCA+TGG | - | chr7.2:28876761-28876780 | MS.gene27712:intron | 60.0% | |
| TGCGCTGCACTTGTGGATGC+CGG | - | chr7.2:28875505-28875524 | MS.gene27712:intron | 60.0% | |
| CGCAGCATGCGCTGCACTTG+TGG | - | chr7.2:28875498-28875517 | MS.gene27712:intron | 65.0% | |
| GAGCCCATGGCTCAGCCACA+TGG | - | chr7.2:28874705-28874724 | MS.gene27712:CDS | 65.0% | |
| GAGCCCATGTGGCTGAGCCA+TGG | + | chr7.2:28874712-28874731 | None:intergenic | 65.0% | |
| GGCTCAGCCACATGGGCTCA+AGG | - | chr7.2:28874713-28874732 | MS.gene27712:CDS | 65.0% | |
| TCTGTCCTCCACCGAGCCCA+TGG | - | chr7.2:28874692-28874711 | MS.gene27712:CDS | 65.0% | |
| TGGCTGAGCCATGGGCTCGG+TGG | + | chr7.2:28874703-28874722 | None:intergenic | 70.0% | |
| !! | CTGAGCCATGGGCTCGGTGG+AGG | + | chr7.2:28874700-28874719 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 28874629 | 28877130 | 28874629 | ID=MS.gene27712 |
| chr7.2 | mRNA | 28874629 | 28877130 | 28874629 | ID=MS.gene27712.t1;Parent=MS.gene27712 |
| chr7.2 | exon | 28876786 | 28877130 | 28876786 | ID=MS.gene27712.t1.exon1;Parent=MS.gene27712.t1 |
| chr7.2 | CDS | 28876786 | 28877130 | 28876786 | ID=cds.MS.gene27712.t1;Parent=MS.gene27712.t1 |
| chr7.2 | exon | 28876670 | 28876690 | 28876670 | ID=MS.gene27712.t1.exon2;Parent=MS.gene27712.t1 |
| chr7.2 | CDS | 28876670 | 28876690 | 28876670 | ID=cds.MS.gene27712.t1;Parent=MS.gene27712.t1 |
| chr7.2 | exon | 28876209 | 28876281 | 28876209 | ID=MS.gene27712.t1.exon3;Parent=MS.gene27712.t1 |
| chr7.2 | CDS | 28876209 | 28876281 | 28876209 | ID=cds.MS.gene27712.t1;Parent=MS.gene27712.t1 |
| chr7.2 | exon | 28876054 | 28876121 | 28876054 | ID=MS.gene27712.t1.exon4;Parent=MS.gene27712.t1 |
| chr7.2 | CDS | 28876054 | 28876121 | 28876054 | ID=cds.MS.gene27712.t1;Parent=MS.gene27712.t1 |
| chr7.2 | exon | 28874934 | 28875066 | 28874934 | ID=MS.gene27712.t1.exon5;Parent=MS.gene27712.t1 |
| chr7.2 | CDS | 28874934 | 28875066 | 28874934 | ID=cds.MS.gene27712.t1;Parent=MS.gene27712.t1 |
| chr7.2 | exon | 28874629 | 28874744 | 28874629 | ID=MS.gene27712.t1.exon6;Parent=MS.gene27712.t1 |
| chr7.2 | CDS | 28874629 | 28874744 | 28874629 | ID=cds.MS.gene27712.t1;Parent=MS.gene27712.t1 |
| Gene Sequence |
| Protein sequence |
