Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27865.t1 | XP_003629873.1 | 94.4 | 178 | 10 | 0 | 3 | 180 | 7 | 184 | 2.30E-92 | 348.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27865.t1 | O04147 | 56.5 | 177 | 77 | 0 | 3 | 179 | 5 | 181 | 1.1e-55 | 217.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27865.t1 | G7L7Z2 | 94.4 | 178 | 10 | 0 | 3 | 180 | 7 | 184 | 1.6e-92 | 348.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049419 | MS.gene27865 | 0.844281 | 8.33E-59 | -1.69E-46 |
| MS.gene050623 | MS.gene27865 | 0.8074 | 5.15E-50 | -1.69E-46 |
| MS.gene051451 | MS.gene27865 | -0.800565 | 1.36E-48 | -1.69E-46 |
| MS.gene05188 | MS.gene27865 | -0.813471 | 2.52E-51 | -1.69E-46 |
| MS.gene051975 | MS.gene27865 | -0.825327 | 4.98E-54 | -1.69E-46 |
| MS.gene053058 | MS.gene27865 | -0.817663 | 2.93E-52 | -1.69E-46 |
| MS.gene054479 | MS.gene27865 | -0.802853 | 4.61E-49 | -1.69E-46 |
| MS.gene05469 | MS.gene27865 | -0.837713 | 4.42E-57 | -1.69E-46 |
| MS.gene054946 | MS.gene27865 | 0.816872 | 4.42E-52 | -1.69E-46 |
| MS.gene05517 | MS.gene27865 | -0.81008 | 1.38E-50 | -1.69E-46 |
| MS.gene055623 | MS.gene27865 | -0.813554 | 2.41E-51 | -1.69E-46 |
| MS.gene055841 | MS.gene27865 | -0.801009 | 1.10E-48 | -1.69E-46 |
| MS.gene056787 | MS.gene27865 | -0.810481 | 1.13E-50 | -1.69E-46 |
| MS.gene056986 | MS.gene27865 | -0.819895 | 9.13E-53 | -1.69E-46 |
| MS.gene058126 | MS.gene27865 | -0.807199 | 5.68E-50 | -1.69E-46 |
| MS.gene058238 | MS.gene27865 | -0.803903 | 2.79E-49 | -1.69E-46 |
| MS.gene059360 | MS.gene27865 | -0.803267 | 3.78E-49 | -1.69E-46 |
| MS.gene059872 | MS.gene27865 | 0.827354 | 1.64E-54 | -1.69E-46 |
| MS.gene06011 | MS.gene27865 | -0.806974 | 6.34E-50 | -1.69E-46 |
| MS.gene060803 | MS.gene27865 | -0.808859 | 2.52E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27865.t1 | MTR_8g087820 | 94.382 | 178 | 10 | 0 | 3 | 180 | 7 | 184 | 1.62e-127 | 356 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27865.t1 | AT4G18930 | 56.497 | 177 | 77 | 0 | 3 | 179 | 5 | 181 | 4.10e-73 | 218 |
| MS.gene27865.t1 | AT4G18940 | 46.328 | 177 | 90 | 2 | 3 | 177 | 21 | 194 | 3.23e-54 | 171 |
Find 59 sgRNAs with CRISPR-Local
Find 107 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATCCCACCCCTCAGATTC+TGG | 0.259300 | 4.1:-12848966 | MS.gene27865:CDS |
| CGGTCATGTGGGGTTCGAAC+TGG | 0.275943 | 4.1:+12849128 | None:intergenic |
| TTGAATTGTTATAACGGAAA+TGG | 0.317537 | 4.1:+12848921 | None:intergenic |
| AAGATAAATCTCTTAAATCT+TGG | 0.334933 | 4.1:-12847711 | MS.gene27865:CDS |
| GTGGTGTTGGCAAGCTAGTT+TGG | 0.341344 | 4.1:+12847661 | None:intergenic |
| GAACTGGGGTCCACCGAATT+CGG | 0.348912 | 4.1:+12849144 | None:intergenic |
| GGCAAAGAAGGAGGTTTATT+CGG | 0.352333 | 4.1:-12849230 | MS.gene27865:CDS |
| GGTCATGTGGGGTTCGAACT+GGG | 0.353795 | 4.1:+12849129 | None:intergenic |
| AGTTTGTTGAGTGCATCGTC+TGG | 0.357178 | 4.1:+12849082 | None:intergenic |
| AGGCGGTCGCATACGTCTTC+CGG | 0.404707 | 4.1:+12849193 | None:intergenic |
| ACCGCCCTCCGATCCGAATT+CGG | 0.405972 | 4.1:-12849157 | MS.gene27865:CDS |
| TGAATTGTTATAACGGAAAT+GGG | 0.411455 | 4.1:+12848922 | None:intergenic |
| GTTTGTTGAGTGCATCGTCT+GGG | 0.440660 | 4.1:+12849083 | None:intergenic |
| GAATCTGAGGGGTGGGATGA+AGG | 0.444860 | 4.1:+12848969 | None:intergenic |
| AGATAAATCTCTTAAATCTT+GGG | 0.453241 | 4.1:-12847710 | MS.gene27865:CDS |
| TACGAGTTGAATTGTTATAA+CGG | 0.463576 | 4.1:+12848915 | None:intergenic |
| GATATTCCAAATGGCAAAGA+AGG | 0.468740 | 4.1:-12849242 | None:intergenic |
| CAACACGGTCAACGGTGACT+TGG | 0.470908 | 4.1:+12849029 | None:intergenic |
| TTCGGTGTGGGCGATCCCAC+CGG | 0.504778 | 4.1:-12849212 | MS.gene27865:CDS |
| TCTGAGGGGTGGGATGAAGG+AGG | 0.506267 | 4.1:+12848972 | None:intergenic |
| TGCTCCGACGACGGTCATGT+GGG | 0.507302 | 4.1:+12849117 | None:intergenic |
| TTGCTCCGACGACGGTCATG+TGG | 0.519464 | 4.1:+12849116 | None:intergenic |
| GAGTGATGAAGAGAAGCAAA+AGG | 0.529008 | 4.1:-12847821 | MS.gene27865:CDS |
| TCGGAGGGCGGTCATGAGCT+TGG | 0.530142 | 4.1:+12849168 | None:intergenic |
| TAACTCTATTGCTCCGACGA+CGG | 0.531252 | 4.1:+12849108 | None:intergenic |
| CCACACGTGAGCCTTCTGTA+TGG | 0.533433 | 4.1:-12847850 | MS.gene27865:CDS |
| ACCGTTGACCGTGTTGCCGC+TGG | 0.533920 | 4.1:-12849022 | MS.gene27865:CDS |
| GTCCACCGAATTCGGATCGG+AGG | 0.536297 | 4.1:+12849152 | None:intergenic |
| CATTGGTTTCCAGAATCTGA+GGG | 0.544773 | 4.1:+12848957 | None:intergenic |
| GTTTCCAGAATCTGAGGGGT+GGG | 0.544896 | 4.1:+12848962 | None:intergenic |
| GCATTGGTTTCCAGAATCTG+AGG | 0.548716 | 4.1:+12848956 | None:intergenic |
| GAAGGAGGTTTATTCGGTGT+GGG | 0.549645 | 4.1:-12849224 | MS.gene27865:CDS |
| ATAAACACACTGATAAAAGA+AGG | 0.557198 | 4.1:+12848997 | None:intergenic |
| GTCATGTGGGGTTCGAACTG+GGG | 0.558588 | 4.1:+12849130 | None:intergenic |
| GCTTACTTATCTGAAAGCTC+AGG | 0.559929 | 4.1:+12847758 | None:intergenic |
| CGGTCGCATACGTCTTCCGG+TGG | 0.566606 | 4.1:+12849196 | None:intergenic |
| ATGGGTGCAGCAGTGTGCAT+TGG | 0.573753 | 4.1:+12848940 | None:intergenic |
| TCCACCGAATTCGGATCGGA+GGG | 0.574564 | 4.1:+12849153 | None:intergenic |
| ACCAGCGGCAACACGGTCAA+CGG | 0.575403 | 4.1:+12849021 | None:intergenic |
| AGAAGGAGGTTTATTCGGTG+TGG | 0.582463 | 4.1:-12849225 | MS.gene27865:CDS |
| ATTCCAAATGGCAAAGAAGG+AGG | 0.583589 | 4.1:-12849239 | None:intergenic |
| CACTCAAATCTCCATACAGA+AGG | 0.585673 | 4.1:+12847839 | None:intergenic |
| CGGTCATGAGCTTGGTGAGG+CGG | 0.586534 | 4.1:+12849176 | None:intergenic |
| GGTTTCCAGAATCTGAGGGG+TGG | 0.595287 | 4.1:+12848961 | None:intergenic |
| ACCGAATTCGGATCGGAGGG+CGG | 0.604262 | 4.1:+12849156 | None:intergenic |
| TTTGTTGAGTGCATCGTCTG+GGG | 0.606981 | 4.1:+12849084 | None:intergenic |
| AAACTCCGATCAGCTTCTGA+AGG | 0.608276 | 4.1:-12849064 | MS.gene27865:CDS |
| TAACACCTTCAGAAGCTGAT+CGG | 0.616481 | 4.1:+12849059 | None:intergenic |
| GGGCGGTCATGAGCTTGGTG+AGG | 0.619509 | 4.1:+12849173 | None:intergenic |
| GCCCTCCGATCCGAATTCGG+TGG | 0.623631 | 4.1:-12849154 | MS.gene27865:CDS |
| GGTCGCATACGTCTTCCGGT+GGG | 0.624642 | 4.1:+12849197 | None:intergenic |
| AGAAGGTACCAGCGGCAACA+CGG | 0.629802 | 4.1:+12849014 | None:intergenic |
| GGGGTCCACCGAATTCGGAT+CGG | 0.635044 | 4.1:+12849149 | None:intergenic |
| GAACCCCACATGACCGTCGT+CGG | 0.662634 | 4.1:-12849121 | MS.gene27865:CDS |
| GCTCCGACGACGGTCATGTG+GGG | 0.664121 | 4.1:+12849118 | None:intergenic |
| CCATACAGAAGGCTCACGTG+TGG | 0.675755 | 4.1:+12847850 | None:intergenic |
| ATTCTTGACGACAGTCTCAG+TGG | 0.687938 | 4.1:-12847781 | MS.gene27865:CDS |
| ATTGGTTTCCAGAATCTGAG+GGG | 0.690122 | 4.1:+12848958 | None:intergenic |
| CTGATAAAAGAAGGTACCAG+CGG | 0.694151 | 4.1:+12849006 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GAGTTTTTTTTTATACATTT+TGG | - | chr4.1:12848948-12848967 | MS.gene27865:CDS | 15.0% |
| !! | AAGATAAATCTCTTAAATCT+TGG | - | chr4.1:12849196-12849215 | MS.gene27865:CDS | 20.0% |
| !! | AGATAAATCTCTTAAATCTT+GGG | - | chr4.1:12849197-12849216 | MS.gene27865:CDS | 20.0% |
| !! | CATTAAAACAATGTATACAT+TGG | + | chr4.1:12849024-12849043 | None:intergenic | 20.0% |
| ! | ACAAAATAAATAGTGTATCG+CGG | + | chr4.1:12848201-12848220 | None:intergenic | 25.0% |
| ! | ATAAACACACTGATAAAAGA+AGG | + | chr4.1:12847913-12847932 | None:intergenic | 25.0% |
| ! | ATAGAATAGACTTATAGAAC+AGG | - | chr4.1:12848055-12848074 | MS.gene27865:intron | 25.0% |
| ! | ATATATCAATCTTCCTTCAT+TGG | + | chr4.1:12848753-12848772 | None:intergenic | 25.0% |
| ! | CTTGGAACATAAATTGTTAT+CGG | - | chr4.1:12848714-12848733 | MS.gene27865:intron | 25.0% |
| ! | GATCAAATTCTACAAAGATA+TGG | + | chr4.1:12848164-12848183 | None:intergenic | 25.0% |
| ! | TCATTGTGATTGAATTCATA+TGG | - | chr4.1:12848505-12848524 | MS.gene27865:intron | 25.0% |
| ! | TGAGATTTGAAAATCTCATT+AGG | + | chr4.1:12848445-12848464 | None:intergenic | 25.0% |
| ! | TGTACAAAATATCGTCATAT+AGG | - | chr4.1:12848218-12848237 | MS.gene27865:intron | 25.0% |
| ! | TTATAGTATCTGTTAGTGTT+TGG | + | chr4.1:12848139-12848158 | None:intergenic | 25.0% |
| !! | TACGAGTTGAATTGTTATAA+CGG | + | chr4.1:12847995-12848014 | None:intergenic | 25.0% |
| !! | TGAATTGTTATAACGGAAAT+GGG | + | chr4.1:12847988-12848007 | None:intergenic | 25.0% |
| !! | TTGAATTGTTATAACGGAAA+TGG | + | chr4.1:12847989-12848008 | None:intergenic | 25.0% |
| !!! | ATAGAACAGGTATATTTTGA+TGG | - | chr4.1:12848068-12848087 | MS.gene27865:intron | 25.0% |
| !!! | TAGAACAGGTATATTTTGAT+GGG | - | chr4.1:12848069-12848088 | MS.gene27865:intron | 25.0% |
| !!! | TTTTTTTGATTGATTCACCA+GGG | + | chr4.1:12848534-12848553 | None:intergenic | 25.0% |
| AAAGTTGTCAATTGTAGACT+GGG | + | chr4.1:12848294-12848313 | None:intergenic | 30.0% | |
| ACAATGTATACATTGGTACT+TGG | + | chr4.1:12849017-12849036 | None:intergenic | 30.0% | |
| AGTAGATTGAATTGAACTCA+AGG | + | chr4.1:12848690-12848709 | None:intergenic | 30.0% | |
| CAATTCAATCTACTTTCTCT+TGG | - | chr4.1:12848696-12848715 | MS.gene27865:intron | 30.0% | |
| GTAGATTGAATTGAACTCAA+GGG | + | chr4.1:12848689-12848708 | None:intergenic | 30.0% | |
| TAATCAAGTAGCAAAGAGTT+TGG | - | chr4.1:12848339-12848358 | MS.gene27865:intron | 30.0% | |
| TACTTCAACTCAAACTTGTA+TGG | + | chr4.1:12848898-12848917 | None:intergenic | 30.0% | |
| !! | TCTGTTTAAGAAAAGTACTG+AGG | - | chr4.1:12848587-12848606 | MS.gene27865:intron | 30.0% |
| !!! | GTTTGTGTGTGTATTTTGAT+AGG | - | chr4.1:12848988-12849007 | MS.gene27865:CDS | 30.0% |
| !!! | GTTTTTTTGATTGATTCACC+AGG | + | chr4.1:12848535-12848554 | None:intergenic | 30.0% |
| AAGTTGTCAATTGTAGACTG+GGG | + | chr4.1:12848293-12848312 | None:intergenic | 35.0% | |
| AGTGTTAGCTAATCCAATGA+AGG | - | chr4.1:12848737-12848756 | MS.gene27865:intron | 35.0% | |
| CAAAATACACACACAAACAC+TGG | + | chr4.1:12848986-12849005 | None:intergenic | 35.0% | |
| CAAAGTTGTCAATTGTAGAC+TGG | + | chr4.1:12848295-12848314 | None:intergenic | 35.0% | |
| CAACTAATCCAAGGATATGA+AGG | + | chr4.1:12848419-12848438 | None:intergenic | 35.0% | |
| TTCAAATCTCAAGCGCAATA+TGG | - | chr4.1:12848454-12848473 | MS.gene27865:intron | 35.0% | |
| !! | CTTCATATCCTTGGATTAGT+TGG | - | chr4.1:12848417-12848436 | MS.gene27865:intron | 35.0% |
| !!! | AACAGGTATATTTTGATGGG+TGG | - | chr4.1:12848072-12848091 | MS.gene27865:intron | 35.0% |
| !!! | ACAGGTATATTTTGATGGGT+GGG | - | chr4.1:12848073-12848092 | MS.gene27865:intron | 35.0% |
| AAGTGACAAGTGTTTGCCAT+TGG | + | chr4.1:12848627-12848646 | None:intergenic | 40.0% | |
| AATTCAAGACTTTGCCCGAA+GGG | + | chr4.1:12848367-12848386 | None:intergenic | 40.0% | |
| AGAGGTGACTACATCACTTA+TGG | + | chr4.1:12848784-12848803 | None:intergenic | 40.0% | |
| ATCCAAGGATATGAAGGACT+CGG | + | chr4.1:12848413-12848432 | None:intergenic | 40.0% | |
| ATTAGGCTCCAACTAATCCA+AGG | + | chr4.1:12848428-12848447 | None:intergenic | 40.0% | |
| CACTCAAATCTCCATACAGA+AGG | + | chr4.1:12849071-12849090 | None:intergenic | 40.0% | |
| GAGTGATGAAGAGAAGCAAA+AGG | - | chr4.1:12849086-12849105 | MS.gene27865:CDS | 40.0% | |
| GCTTACTTATCTGAAAGCTC+AGG | + | chr4.1:12849152-12849171 | None:intergenic | 40.0% | |
| GGCAAAGAAGGAGGTTTATT+CGG | - | chr4.1:12847677-12847696 | MS.gene27865:CDS | 40.0% | |
| GGTAAAACTTCGTACTCCAA+TGG | - | chr4.1:12848608-12848627 | MS.gene27865:intron | 40.0% | |
| TAACACCTTCAGAAGCTGAT+CGG | + | chr4.1:12847851-12847870 | None:intergenic | 40.0% | |
| TAATTCAAGACTTTGCCCGA+AGG | + | chr4.1:12848368-12848387 | None:intergenic | 40.0% | |
| TTGAATTCATATGGCAACCC+TGG | - | chr4.1:12848514-12848533 | MS.gene27865:intron | 40.0% | |
| ! | ATTGGTTTCCAGAATCTGAG+GGG | + | chr4.1:12847952-12847971 | None:intergenic | 40.0% |
| ! | CAAACACTTGTCACTTCACT+TGG | - | chr4.1:12848631-12848650 | MS.gene27865:intron | 40.0% |
| !! | CATTGGTTTCCAGAATCTGA+GGG | + | chr4.1:12847953-12847972 | None:intergenic | 40.0% |
| !! | CTGATAAAAGAAGGTACCAG+CGG | + | chr4.1:12847904-12847923 | None:intergenic | 40.0% |
| AAACTCCGATCAGCTTCTGA+AGG | - | chr4.1:12847843-12847862 | MS.gene27865:CDS | 45.0% | |
| ATTCTTGACGACAGTCTCAG+TGG | - | chr4.1:12849126-12849145 | MS.gene27865:CDS | 45.0% | |
| TAACTCTATTGCTCCGACGA+CGG | + | chr4.1:12847802-12847821 | None:intergenic | 45.0% | |
| TTTGTTGAGTGCATCGTCTG+GGG | + | chr4.1:12847826-12847845 | None:intergenic | 45.0% | |
| ! | AGAAGGAGGTTTATTCGGTG+TGG | - | chr4.1:12847682-12847701 | MS.gene27865:CDS | 45.0% |
| ! | CAAAGAGTTTGGTTCCCTTC+GGG | - | chr4.1:12848350-12848369 | MS.gene27865:intron | 45.0% |
| ! | GCAAAGAGTTTGGTTCCCTT+CGG | - | chr4.1:12848349-12848368 | MS.gene27865:intron | 45.0% |
| ! | GTTTGTTGAGTGCATCGTCT+GGG | + | chr4.1:12847827-12847846 | None:intergenic | 45.0% |
| ! | TCGTCATATAGGTGCTACAG+TGG | - | chr4.1:12848229-12848248 | MS.gene27865:intron | 45.0% |
| !! | AGTTTGTTGAGTGCATCGTC+TGG | + | chr4.1:12847828-12847847 | None:intergenic | 45.0% |
| !! | GAAGGAGGTTTATTCGGTGT+GGG | - | chr4.1:12847683-12847702 | MS.gene27865:CDS | 45.0% |
| !! | GCATTGGTTTCCAGAATCTG+AGG | + | chr4.1:12847954-12847973 | None:intergenic | 45.0% |
| !!! | GGTATATTTTGATGGGTGGG+TGG | - | chr4.1:12848076-12848095 | MS.gene27865:intron | 45.0% |
| GTTTCCAGAATCTGAGGGGT+GGG | + | chr4.1:12847948-12847967 | None:intergenic | 50.0% | |
| TGCCGAGTCCTTCATATCCT+TGG | - | chr4.1:12848408-12848427 | MS.gene27865:intron | 50.0% | |
| ! | AGTCACCTCTGAAGACTCTG+CGG | - | chr4.1:12848794-12848813 | MS.gene27865:intron | 50.0% |
| ACAGTGGCGCTATTGCGTAG+TGG | - | chr4.1:12848245-12848264 | MS.gene27865:intron | 55.0% | |
| ATGGGTGCAGCAGTGTGCAT+TGG | + | chr4.1:12847970-12847989 | None:intergenic | 55.0% | |
| CAACACGGTCAACGGTGACT+TGG | + | chr4.1:12847881-12847900 | None:intergenic | 55.0% | |
| CAAGTCCGCAGAGTCTTCAG+AGG | + | chr4.1:12848802-12848821 | None:intergenic | 55.0% | |
| CCACACGTGAGCCTTCTGTA+TGG | - | chr4.1:12849057-12849076 | MS.gene27865:CDS | 55.0% | |
| CCATACAGAAGGCTCACGTG+TGG | + | chr4.1:12849060-12849079 | None:intergenic | 55.0% | |
| GAACTGGGGTCCACCGAATT+CGG | + | chr4.1:12847766-12847785 | None:intergenic | 55.0% | |
| GAATCTGAGGGGTGGGATGA+AGG | + | chr4.1:12847941-12847960 | None:intergenic | 55.0% | |
| GGTCATGTGGGGTTCGAACT+GGG | + | chr4.1:12847781-12847800 | None:intergenic | 55.0% | |
| GGTTTCCAGAATCTGAGGGG+TGG | + | chr4.1:12847949-12847968 | None:intergenic | 55.0% | |
| GTCATGTGGGGTTCGAACTG+GGG | + | chr4.1:12847780-12847799 | None:intergenic | 55.0% | |
| TCATCCCACCCCTCAGATTC+TGG | - | chr4.1:12847941-12847960 | MS.gene27865:intron | 55.0% | |
| TCCACCGAATTCGGATCGGA+GGG | + | chr4.1:12847757-12847776 | None:intergenic | 55.0% | |
| ! | CTCTGAAGACTCTGCGGACT+TGG | - | chr4.1:12848800-12848819 | MS.gene27865:intron | 55.0% |
| !! | AGAAGGTACCAGCGGCAACA+CGG | + | chr4.1:12847896-12847915 | None:intergenic | 55.0% |
| ACCAGCGGCAACACGGTCAA+CGG | + | chr4.1:12847889-12847908 | None:intergenic | 60.0% | |
| ACCGAATTCGGATCGGAGGG+CGG | + | chr4.1:12847754-12847773 | None:intergenic | 60.0% | |
| ACCGCCCTCCGATCCGAATT+CGG | - | chr4.1:12847750-12847769 | MS.gene27865:CDS | 60.0% | |
| AGGCGGTCGCATACGTCTTC+CGG | + | chr4.1:12847717-12847736 | None:intergenic | 60.0% | |
| CGGTCATGTGGGGTTCGAAC+TGG | + | chr4.1:12847782-12847801 | None:intergenic | 60.0% | |
| GAACCCCACATGACCGTCGT+CGG | - | chr4.1:12847786-12847805 | MS.gene27865:CDS | 60.0% | |
| GGGGTCCACCGAATTCGGAT+CGG | + | chr4.1:12847761-12847780 | None:intergenic | 60.0% | |
| GGTCGCATACGTCTTCCGGT+GGG | + | chr4.1:12847713-12847732 | None:intergenic | 60.0% | |
| GTCCACCGAATTCGGATCGG+AGG | + | chr4.1:12847758-12847777 | None:intergenic | 60.0% | |
| TCTGAGGGGTGGGATGAAGG+AGG | + | chr4.1:12847938-12847957 | None:intergenic | 60.0% | |
| TGCTCCGACGACGGTCATGT+GGG | + | chr4.1:12847793-12847812 | None:intergenic | 60.0% | |
| TTGCTCCGACGACGGTCATG+TGG | + | chr4.1:12847794-12847813 | None:intergenic | 60.0% | |
| ! | CGGTCATGAGCTTGGTGAGG+CGG | + | chr4.1:12847734-12847753 | None:intergenic | 60.0% |
| ACCGTTGACCGTGTTGCCGC+TGG | - | chr4.1:12847885-12847904 | MS.gene27865:intron | 65.0% | |
| CGGTCGCATACGTCTTCCGG+TGG | + | chr4.1:12847714-12847733 | None:intergenic | 65.0% | |
| GCCCTCCGATCCGAATTCGG+TGG | - | chr4.1:12847753-12847772 | MS.gene27865:CDS | 65.0% | |
| GCTCCGACGACGGTCATGTG+GGG | + | chr4.1:12847792-12847811 | None:intergenic | 65.0% | |
| TCGGAGGGCGGTCATGAGCT+TGG | + | chr4.1:12847742-12847761 | None:intergenic | 65.0% | |
| ! | GGGCGGTCATGAGCTTGGTG+AGG | + | chr4.1:12847737-12847756 | None:intergenic | 65.0% |
| ! | TTCGGTGTGGGCGATCCCAC+CGG | - | chr4.1:12847695-12847714 | MS.gene27865:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 12847675 | 12849254 | 12847675 | ID=MS.gene27865 |
| chr4.1 | mRNA | 12847675 | 12849254 | 12847675 | ID=MS.gene27865.t1;Parent=MS.gene27865 |
| chr4.1 | exon | 12848918 | 12849254 | 12848918 | ID=MS.gene27865.t1.exon1;Parent=MS.gene27865.t1 |
| chr4.1 | CDS | 12848918 | 12849254 | 12848918 | ID=cds.MS.gene27865.t1;Parent=MS.gene27865.t1 |
| chr4.1 | exon | 12847675 | 12847880 | 12847675 | ID=MS.gene27865.t1.exon2;Parent=MS.gene27865.t1 |
| chr4.1 | CDS | 12847675 | 12847880 | 12847675 | ID=cds.MS.gene27865.t1;Parent=MS.gene27865.t1 |
| Gene Sequence |
| Protein sequence |
