Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27966.t1 | XP_003630015.1 | 96.2 | 604 | 23 | 0 | 1 | 604 | 1 | 604 | 0.00E+00 | 1138.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27966.t1 | Q84MA5 | 67.1 | 592 | 185 | 1 | 11 | 602 | 9 | 590 | 1.8e-230 | 800.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27966.t1 | G7L9L7 | 96.2 | 604 | 23 | 0 | 1 | 604 | 1 | 604 | 0.0e+00 | 1138.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene08148 | MS.gene27966 | PPI |
| MS.gene042491 | MS.gene27966 | PPI |
| MS.gene32277 | MS.gene27966 | PPI |
| MS.gene49831 | MS.gene27966 | PPI |
| MS.gene41790 | MS.gene27966 | PPI |
| MS.gene08137 | MS.gene27966 | PPI |
| MS.gene007812 | MS.gene27966 | PPI |
| MS.gene007811 | MS.gene27966 | PPI |
| MS.gene41795 | MS.gene27966 | PPI |
| MS.gene08144 | MS.gene27966 | PPI |
| MS.gene41792 | MS.gene27966 | PPI |
| MS.gene38965 | MS.gene27966 | PPI |
| MS.gene38964 | MS.gene27966 | PPI |
| MS.gene042480 | MS.gene27966 | PPI |
| MS.gene58674 | MS.gene27966 | PPI |
| MS.gene27966 | MS.gene073450 | PPI |
| MS.gene032361 | MS.gene27966 | PPI |
| MS.gene00402 | MS.gene27966 | PPI |
| MS.gene041367 | MS.gene27966 | PPI |
| MS.gene47297 | MS.gene27966 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27966.t1 | MTR_8g089320 | 96.192 | 604 | 23 | 0 | 1 | 604 | 1 | 604 | 0.0 | 1189 |
| MS.gene27966.t1 | MTR_8g089360 | 74.564 | 574 | 142 | 3 | 21 | 594 | 26 | 595 | 0.0 | 874 |
| MS.gene27966.t1 | MTR_8g089360 | 74.564 | 574 | 142 | 3 | 21 | 594 | 9 | 578 | 0.0 | 873 |
| MS.gene27966.t1 | MTR_8g089340 | 92.123 | 457 | 35 | 1 | 149 | 604 | 1 | 457 | 0.0 | 814 |
| MS.gene27966.t1 | MTR_1g030660 | 63.276 | 580 | 206 | 2 | 28 | 601 | 23 | 601 | 0.0 | 763 |
| MS.gene27966.t1 | MTR_2g035430 | 56.388 | 587 | 256 | 0 | 1 | 587 | 1 | 587 | 0.0 | 709 |
| MS.gene27966.t1 | MTR_8g461380 | 49.824 | 568 | 279 | 2 | 19 | 586 | 26 | 587 | 0.0 | 578 |
| MS.gene27966.t1 | MTR_1g111740 | 40.816 | 588 | 325 | 4 | 28 | 603 | 6 | 582 | 3.23e-152 | 451 |
| MS.gene27966.t1 | MTR_4g099270 | 40.037 | 547 | 310 | 6 | 51 | 587 | 1 | 539 | 1.39e-127 | 386 |
| MS.gene27966.t1 | MTR_4g099270 | 44.652 | 374 | 203 | 2 | 35 | 404 | 6 | 379 | 7.79e-106 | 325 |
| MS.gene27966.t1 | MTR_4g099270 | 37.931 | 435 | 252 | 6 | 163 | 587 | 1 | 427 | 2.17e-90 | 286 |
| MS.gene27966.t1 | MTR_4g099270 | 44.040 | 302 | 165 | 2 | 35 | 332 | 6 | 307 | 9.87e-83 | 262 |
| MS.gene27966.t1 | MTR_8g089342 | 90.647 | 139 | 12 | 1 | 1 | 138 | 1 | 139 | 5.78e-80 | 248 |
| MS.gene27966.t1 | MTR_7g086510 | 37.084 | 391 | 239 | 3 | 63 | 446 | 29 | 419 | 1.03e-75 | 253 |
| MS.gene27966.t1 | MTR_6g027630 | 34.762 | 420 | 264 | 5 | 35 | 446 | 7 | 424 | 2.40e-75 | 251 |
| MS.gene27966.t1 | MTR_6g027630 | 34.762 | 420 | 264 | 5 | 35 | 446 | 7 | 424 | 4.49e-75 | 251 |
| MS.gene27966.t1 | MTR_6g027680 | 35.128 | 390 | 244 | 3 | 65 | 446 | 39 | 427 | 6.33e-72 | 242 |
| MS.gene27966.t1 | MTR_6g027650 | 33.649 | 422 | 259 | 6 | 35 | 446 | 7 | 417 | 1.80e-71 | 242 |
| MS.gene27966.t1 | MTR_6g027660 | 32.401 | 429 | 277 | 4 | 25 | 446 | 3 | 425 | 4.86e-71 | 241 |
| MS.gene27966.t1 | MTR_6g034535 | 43.284 | 268 | 137 | 5 | 328 | 586 | 49 | 310 | 2.53e-70 | 230 |
| MS.gene27966.t1 | MTR_6g034535 | 42.708 | 96 | 30 | 1 | 98 | 193 | 19 | 89 | 7.75e-15 | 76.3 |
| MS.gene27966.t1 | MTR_7g086610 | 36.031 | 383 | 236 | 3 | 72 | 446 | 32 | 413 | 1.64e-69 | 236 |
| MS.gene27966.t1 | MTR_7g007850 | 30.577 | 520 | 341 | 9 | 65 | 571 | 42 | 554 | 1.16e-66 | 228 |
| MS.gene27966.t1 | MTR_7g007850 | 28.727 | 550 | 342 | 9 | 65 | 571 | 42 | 584 | 3.03e-62 | 216 |
| MS.gene27966.t1 | MTR_7g007850 | 32.282 | 412 | 268 | 7 | 65 | 467 | 42 | 451 | 3.40e-59 | 206 |
| MS.gene27966.t1 | MTR_7g007850 | 32.282 | 412 | 268 | 7 | 65 | 467 | 42 | 451 | 5.67e-59 | 206 |
| MS.gene27966.t1 | MTR_6g027630 | 34.118 | 340 | 215 | 4 | 115 | 446 | 1 | 339 | 5.27e-56 | 198 |
| MS.gene27966.t1 | MTR_6g027670 | 32.278 | 158 | 107 | 0 | 289 | 446 | 1 | 158 | 7.21e-26 | 108 |
| MS.gene27966.t1 | MTR_2g064760 | 89.655 | 29 | 3 | 0 | 489 | 517 | 13 | 41 | 6.53e-12 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27966.t1 | AT4G21120 | 66.835 | 594 | 187 | 1 | 11 | 604 | 9 | 592 | 0.0 | 838 |
| MS.gene27966.t1 | AT2G34960 | 57.473 | 562 | 237 | 2 | 11 | 571 | 3 | 563 | 0.0 | 678 |
| MS.gene27966.t1 | AT4G21120 | 63.938 | 452 | 153 | 1 | 153 | 604 | 1 | 442 | 0.0 | 605 |
| MS.gene27966.t1 | AT1G17120 | 53.309 | 559 | 260 | 1 | 13 | 571 | 22 | 579 | 0.0 | 596 |
| MS.gene27966.t1 | AT3G10600 | 40.273 | 586 | 316 | 8 | 27 | 592 | 11 | 582 | 2.15e-145 | 433 |
| MS.gene27966.t1 | AT5G04770 | 40.034 | 582 | 317 | 7 | 30 | 592 | 15 | 583 | 3.01e-144 | 430 |
| MS.gene27966.t1 | AT5G04770 | 41.927 | 384 | 213 | 2 | 30 | 403 | 15 | 398 | 5.23e-107 | 328 |
| MS.gene27966.t1 | AT3G10600 | 38.222 | 450 | 244 | 8 | 163 | 592 | 1 | 436 | 5.94e-101 | 314 |
| MS.gene27966.t1 | AT5G04770 | 38.085 | 449 | 246 | 7 | 163 | 592 | 1 | 436 | 2.18e-93 | 294 |
| MS.gene27966.t1 | AT5G36940 | 35.156 | 384 | 242 | 3 | 70 | 446 | 27 | 410 | 7.59e-74 | 248 |
| MS.gene27966.t1 | AT3G03720 | 34.913 | 401 | 252 | 3 | 53 | 446 | 7 | 405 | 1.57e-73 | 247 |
| MS.gene27966.t1 | AT1G58030 | 33.506 | 385 | 249 | 3 | 69 | 446 | 37 | 421 | 1.05e-68 | 235 |
| MS.gene27966.t1 | AT1G05940 | 29.511 | 532 | 352 | 7 | 64 | 578 | 40 | 565 | 2.50e-66 | 227 |
| MS.gene27966.t1 | AT1G05940 | 30.242 | 496 | 323 | 7 | 64 | 542 | 40 | 529 | 3.09e-63 | 218 |
| MS.gene27966.t1 | AT1G05940 | 31.382 | 427 | 280 | 5 | 64 | 478 | 40 | 465 | 3.44e-61 | 211 |
| MS.gene27966.t1 | AT1G05940 | 27.703 | 444 | 300 | 5 | 151 | 578 | 9 | 447 | 2.84e-43 | 161 |
Find 159 sgRNAs with CRISPR-Local
Find 261 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATTGGAATTTCAGCTTAT+TGG | 0.122057 | 4.4:+11937474 | MS.gene27966:CDS |
| TCCACGACTTCACTCCTTTC+GGG | 0.194112 | 4.4:+11936835 | MS.gene27966:CDS |
| CTTGTATACTATGTGCTATT+GGG | 0.197270 | 4.4:+11937722 | MS.gene27966:CDS |
| GTGTGTCTTGTGTTGATTAT+TGG | 0.202436 | 4.4:+11937446 | MS.gene27966:CDS |
| CCTTGTATACTATGTGCTAT+TGG | 0.216779 | 4.4:+11937721 | MS.gene27966:CDS |
| TTTGTTCCTCTGTGGTTTAT+AGG | 0.224891 | 4.4:+11937533 | MS.gene27966:CDS |
| GCTATTAACATATTCCTTCT+TGG | 0.225477 | 4.4:+11937647 | MS.gene27966:CDS |
| AATTGGAATTTCAGCTTATT+GGG | 0.231227 | 4.4:+11937475 | MS.gene27966:CDS |
| TTGTTCCTCTGTGGTTTATA+GGG | 0.252540 | 4.4:+11937534 | MS.gene27966:CDS |
| GTTGCTTTCTTTACCGATCT+TGG | 0.269135 | 4.4:+11937299 | MS.gene27966:CDS |
| CTGTTATGGAAACACCTTTC+CGG | 0.270716 | 4.4:+11934304 | MS.gene27966:CDS |
| TTCGGTATCGGCGCCGTTAT+TGG | 0.276213 | 4.4:+11934438 | MS.gene27966:CDS |
| TTATAGGGACTGGTGCTCTT+TGG | 0.283313 | 4.4:+11937549 | MS.gene27966:CDS |
| TGCTTACTTAAGAGTAGAAT+TGG | 0.292424 | 4.4:+11936488 | MS.gene27966:CDS |
| ATCGGCGCCGTTATTGGTTC+TGG | 0.295459 | 4.4:+11934444 | MS.gene27966:CDS |
| TGCAGAGCTGGTGGAGATTA+AGG | 0.299520 | 4.4:+11934362 | MS.gene27966:CDS |
| CAAGGGCTGTGATGGCTACT+AGG | 0.303231 | 4.4:-11936698 | None:intergenic |
| GGGGAGTACCTTTGGTTCCT+TGG | 0.311642 | 4.4:+11937606 | MS.gene27966:CDS |
| TTCCACGACTTCACTCCTTT+CGG | 0.314152 | 4.4:+11936834 | MS.gene27966:CDS |
| ATACTCAAGGAGGATGTTTC+CGG | 0.316964 | 4.4:-11936535 | None:intergenic |
| GGGCATATCTGCTTTGTTAT+CGG | 0.324019 | 4.4:+11934539 | MS.gene27966:CDS |
| TGTAATGTCGTTTGTCATCT+CGG | 0.348674 | 4.4:+11934518 | MS.gene27966:CDS |
| GACATTCCAATTGGTCTAGT+TGG | 0.355410 | 4.4:+11936957 | MS.gene27966:CDS |
| TCAAAAGAACGACTTCTTCC+CGG | 0.355424 | 4.4:+11934245 | MS.gene27966:CDS |
| CACAATATGAACCCTGACTA+TGG | 0.355787 | 4.4:+11936648 | MS.gene27966:CDS |
| CGTATATAAGGTTTGCGGTT+TGG | 0.357696 | 4.4:+11937687 | MS.gene27966:CDS |
| GCTGTGGAAATTCCGGTTGC+AGG | 0.357996 | 4.4:+11934582 | MS.gene27966:CDS |
| TCTGGAATATTTGTGCTTAC+CGG | 0.360075 | 4.4:+11934462 | MS.gene27966:CDS |
| GCAATTGAACAAGGTGGAAC+AGG | 0.361594 | 4.4:+11937823 | MS.gene27966:CDS |
| TTGATTATTGGTTCTTCAAT+TGG | 0.371036 | 4.4:+11937458 | MS.gene27966:CDS |
| ACTAGGGCTGCAATAGCAAT+AGG | 0.377127 | 4.4:-11936681 | None:intergenic |
| TTGCTTTCTTTACCGATCTT+GGG | 0.377778 | 4.4:+11937300 | MS.gene27966:CDS |
| TTCACTCCTTTCGGGCTTCA+CGG | 0.378499 | 4.4:+11936843 | MS.gene27966:CDS |
| TAAGTTATGGGGAGTACCTT+TGG | 0.384691 | 4.4:+11937598 | MS.gene27966:CDS |
| TTAGTGCTGTTGGGATGGAT+TGG | 0.393093 | 4.4:+11937084 | MS.gene27966:CDS |
| ATTGAGATTGTAGCATTCAT+AGG | 0.394274 | 4.4:-11937257 | None:intergenic |
| GGGTCAAGATGGCCATAGTC+AGG | 0.395099 | 4.4:-11936660 | None:intergenic |
| GGAGGAGTCGTTTAAGAGTT+GGG | 0.398486 | 4.4:+11934266 | MS.gene27966:CDS |
| GGCAAAGAAGCCTAAGTTAT+GGG | 0.403530 | 4.4:+11937586 | MS.gene27966:CDS |
| TAGTGCTGTTGGGATGGATT+GGG | 0.404247 | 4.4:+11937085 | MS.gene27966:CDS |
| TCAAGTGAGGTAACTACAAA+AGG | 0.408616 | 4.4:+11937404 | MS.gene27966:CDS |
| AACTTAGGCTTCTTTGCCAT+TGG | 0.410038 | 4.4:-11937581 | None:intergenic |
| AGAGTTTGCTGTGGAAATTC+CGG | 0.413761 | 4.4:+11934575 | MS.gene27966:CDS |
| AAACTACGGAAAATCTGTTA+TGG | 0.423549 | 4.4:+11934290 | MS.gene27966:CDS |
| TCCTTTCGGGCTTCACGGTA+TGG | 0.424775 | 4.4:+11936848 | MS.gene27966:CDS |
| TGGCATTGGCACTTCTAGTA+AGG | 0.430198 | 4.4:+11937372 | MS.gene27966:CDS |
| GGCTAGGCAGGAAGCAGGTC+CGG | 0.432589 | 4.4:+11934491 | MS.gene27966:CDS |
| GATGTTTCCGGCAGCTATAA+AGG | 0.433876 | 4.4:-11936523 | None:intergenic |
| ACTATTATACGAAAATCATC+AGG | 0.434415 | 4.4:-11936624 | None:intergenic |
| GCTCTTGTTGATGAAAGAAC+AGG | 0.435974 | 4.4:+11937230 | MS.gene27966:CDS |
| ATAAGGTTTGCGGTTTGGAC+AGG | 0.438702 | 4.4:+11937692 | MS.gene27966:CDS |
| ATTGAACCAACTAGACCAAT+TGG | 0.438801 | 4.4:-11936963 | None:intergenic |
| GGAAACACCTTTCCGGTTGA+AGG | 0.439213 | 4.4:+11934311 | MS.gene27966:CDS |
| ACATACTAGTGGTTCTGATC+AGG | 0.442761 | 4.4:+11937790 | MS.gene27966:CDS |
| GCACTAAAAGCAACAGAGAA+AGG | 0.459176 | 4.4:-11937068 | None:intergenic |
| CGGAGGAGTCGTTTAAGAGT+TGG | 0.471701 | 4.4:+11934265 | MS.gene27966:CDS |
| TACCGGACTTGAGGCTAGGC+AGG | 0.477948 | 4.4:+11934479 | MS.gene27966:CDS |
| CCTCTGTGGTTTATAGGGAC+TGG | 0.479549 | 4.4:+11937539 | MS.gene27966:CDS |
| TGTGGCTATGTAGTTGAAGA+TGG | 0.479563 | 4.4:-11936745 | None:intergenic |
| AACAGTGAGAATGGATGGAT+TGG | 0.479583 | 4.4:+11937500 | MS.gene27966:CDS |
| GTTGAAGATGGAAGAGCCTT+TGG | 0.481809 | 4.4:-11936733 | None:intergenic |
| GCTTACTTAAGAGTAGAATT+GGG | 0.482784 | 4.4:+11936489 | MS.gene27966:CDS |
| CAACTCTTAAACGACTCCTC+CGG | 0.483055 | 4.4:-11934264 | None:intergenic |
| GTTCTTAGTTTCTTCAGCCA+TGG | 0.485412 | 4.4:-11936925 | None:intergenic |
| GTAATGTCGTTTGTCATCTC+GGG | 0.487782 | 4.4:+11934519 | MS.gene27966:CDS |
| AACTCTTAAACGACTCCTCC+GGG | 0.489247 | 4.4:-11934263 | None:intergenic |
| TGGCAAAGAAGCCTAAGTTA+TGG | 0.489518 | 4.4:+11937585 | MS.gene27966:CDS |
| GACTTGATGTGGTTCGGTAT+CGG | 0.490414 | 4.4:+11934426 | MS.gene27966:CDS |
| ACGCCGCGGTAGCTCGATCA+TGG | 0.494424 | 4.4:+11936568 | MS.gene27966:CDS |
| GGGCTTGGCTTTGATTAGAC+CGG | 0.496348 | 4.4:-11936805 | None:intergenic |
| AAAATCGTATATAAGGTTTG+CGG | 0.499007 | 4.4:+11937682 | MS.gene27966:CDS |
| GACACACAATGAGATTTACT+TGG | 0.500876 | 4.4:-11937430 | None:intergenic |
| TATTGGGCTAACAGTGAGAA+TGG | 0.501880 | 4.4:+11937491 | MS.gene27966:CDS |
| ATCCTCCTTGAGTATATCAT+AGG | 0.504563 | 4.4:+11936543 | MS.gene27966:CDS |
| GCAGCAAACGATCCTTCAAC+CGG | 0.507969 | 4.4:-11934323 | None:intergenic |
| CCAATTGGAATGTCTCTACC+AGG | 0.509969 | 4.4:-11936948 | None:intergenic |
| CCTGGTAGAGACATTCCAAT+TGG | 0.511803 | 4.4:+11936948 | MS.gene27966:CDS |
| GGAGAGGTGGTCGATGGCGG+CGG | 0.515481 | 4.4:+11934198 | MS.gene27966:CDS |
| AAGGGCTGTGATGGCTACTA+GGG | 0.519818 | 4.4:-11936697 | None:intergenic |
| TTTGTTGCCTTTATAGCTGC+CGG | 0.521495 | 4.4:+11936516 | MS.gene27966:CDS |
| TGGTGGGACTTGATGTGGTT+CGG | 0.522493 | 4.4:+11934420 | MS.gene27966:CDS |
| AAATATTCCAGAACCAATAA+CGG | 0.523587 | 4.4:-11934451 | None:intergenic |
| ATCTAGTGATCATGCAGAGC+TGG | 0.523633 | 4.4:+11934350 | MS.gene27966:CDS |
| CAAGTGAGGTAACTACAAAA+GGG | 0.524334 | 4.4:+11937405 | MS.gene27966:CDS |
| TTAATAGCAATAGATAAAGA+AGG | 0.526151 | 4.4:-11937632 | None:intergenic |
| TTTAAGAGTTGGGGAAACTA+CGG | 0.530921 | 4.4:+11934276 | MS.gene27966:CDS |
| CCAATAGCACATAGTATACA+AGG | 0.532930 | 4.4:-11937721 | None:intergenic |
| AGATGAAGAAGACGTTGAAC+TGG | 0.533887 | 4.4:+11934400 | MS.gene27966:CDS |
| CTTGCAGTTTACAGCACCAA+AGG | 0.534562 | 4.4:+11936717 | MS.gene27966:CDS |
| CTAGGGCTGCAATAGCAATA+GGG | 0.541934 | 4.4:-11936680 | None:intergenic |
| TTGTATACTATGTGCTATTG+GGG | 0.543861 | 4.4:+11937723 | MS.gene27966:CDS |
| CTTTGATGCAGTTTCAACCA+TGG | 0.552516 | 4.4:+11936908 | MS.gene27966:CDS |
| CTTGAGGCTAGGCAGGAAGC+AGG | 0.555643 | 4.4:+11934486 | MS.gene27966:CDS |
| TGCTTACCGGACTTGAGGCT+AGG | 0.556310 | 4.4:+11934475 | MS.gene27966:CDS |
| GGGCTAACAGTGAGAATGGA+TGG | 0.558502 | 4.4:+11937495 | MS.gene27966:CDS |
| ATAGATAAAGAAGGTAGCCA+AGG | 0.559440 | 4.4:-11937623 | None:intergenic |
| TAAGGTTTGCGGTTTGGACA+GGG | 0.562484 | 4.4:+11937693 | MS.gene27966:CDS |
| GTAAACTGCAAGGGCTGTGA+TGG | 0.563586 | 4.4:-11936706 | None:intergenic |
| CATAGTCAGGGTTCATATTG+TGG | 0.563878 | 4.4:-11936647 | None:intergenic |
| GTTGGAGAGGTGGTCGATGG+CGG | 0.564645 | 4.4:+11934195 | MS.gene27966:CDS |
| GAAAACAGGAACATGGCAGT+TGG | 0.566836 | 4.4:+11934177 | None:intergenic |
| CTTTGGTGCTGTAAACTGCA+AGG | 0.567605 | 4.4:-11936716 | None:intergenic |
| GCAGTTGGAGAGGTGGTCGA+TGG | 0.568853 | 4.4:+11934192 | MS.gene27966:CDS |
| TAGTGATCATGCAGAGCTGG+TGG | 0.569903 | 4.4:+11934353 | MS.gene27966:CDS |
| GTTTCACTAGGTGCTTTGAA+AGG | 0.570706 | 4.4:+11937119 | MS.gene27966:CDS |
| ACACCATCTTTGTTCCTCTG+TGG | 0.571390 | 4.4:+11937525 | MS.gene27966:CDS |
| ATTTGTGCTTACCGGACTTG+AGG | 0.572133 | 4.4:+11934470 | MS.gene27966:CDS |
| CAATAGCAATAGGGTCAAGA+TGG | 0.574940 | 4.4:-11936671 | None:intergenic |
| TGAAGAAGACGTTGAACTGG+TGG | 0.575728 | 4.4:+11934403 | MS.gene27966:CDS |
| CAGGAACATGGCAGTTGGAG+AGG | 0.576698 | 4.4:+11934182 | None:intergenic |
| AACATAAGCAAAGAAAAGTA+CGG | 0.578928 | 4.4:-11936883 | None:intergenic |
| GCTAAGTACATTGTTTCACT+AGG | 0.579305 | 4.4:+11937107 | MS.gene27966:CDS |
| GATCAGATTAAACATACTAG+TGG | 0.585592 | 4.4:+11937779 | MS.gene27966:CDS |
| AAGGAGATATTATTCAAGTG+AGG | 0.585702 | 4.4:+11937391 | MS.gene27966:CDS |
| TGAACTGGTGGGACTTGATG+TGG | 0.588455 | 4.4:+11934415 | MS.gene27966:CDS |
| TTCCTGCCTAGCCTCAAGTC+CGG | 0.590625 | 4.4:-11934481 | None:intergenic |
| ACCATACCGTGAAGCCCGAA+AGG | 0.592168 | 4.4:-11936849 | None:intergenic |
| GCCCGAAAGGAGTGAAGTCG+TGG | 0.598740 | 4.4:-11936836 | None:intergenic |
| GAAGGTAGCCAAGGAACCAA+AGG | 0.599611 | 4.4:-11937614 | None:intergenic |
| GTACTCACATGATGCCACCT+TGG | 0.601374 | 4.4:+11937204 | MS.gene27966:CDS |
| ATTATCTTCATAGTAATCGC+CGG | 0.602298 | 4.4:+11936786 | MS.gene27966:CDS |
| AAACGATCCTTCAACCGGAA+AGG | 0.603785 | 4.4:-11934318 | None:intergenic |
| GAGGAGTCGTTTAAGAGTTG+GGG | 0.604687 | 4.4:+11934267 | MS.gene27966:CDS |
| TACTAGTGGTTCTGATCAGG+AGG | 0.607435 | 4.4:+11937793 | MS.gene27966:CDS |
| GAACATGGCAGTTGGAGAGG+TGG | 0.607953 | 4.4:+11934185 | None:intergenic |
| GGTTGAGAAGCAATTGAACA+AGG | 0.608119 | 4.4:+11937814 | MS.gene27966:CDS |
| ACAAAGTAGCAATCGACAAG+AGG | 0.610155 | 4.4:-11937334 | None:intergenic |
| AAACCACAGAGGAACAAAGA+TGG | 0.613035 | 4.4:-11937528 | None:intergenic |
| GTGGAGATTAAGGCTAGGAG+TGG | 0.614966 | 4.4:+11934372 | MS.gene27966:CDS |
| TTTGGTGCTGTAAACTGCAA+GGG | 0.618827 | 4.4:-11936715 | None:intergenic |
| GGTCAAGATGGCCATAGTCA+GGG | 0.621031 | 4.4:-11936659 | None:intergenic |
| TTGTTATACAGAGTTTGCTG+TGG | 0.625474 | 4.4:+11934566 | MS.gene27966:CDS |
| AGCTGGTGGAGATTAAGGCT+AGG | 0.626254 | 4.4:+11934367 | MS.gene27966:CDS |
| GGCGGCGGAGTACGTAGGAG+AGG | 0.626720 | 4.4:+11934213 | MS.gene27966:CDS |
| ACAAACGACATTACAACCGC+CGG | 0.627187 | 4.4:-11934510 | None:intergenic |
| CAATTGAACAAGGTGGAACA+GGG | 0.630668 | 4.4:+11937824 | MS.gene27966:CDS |
| CGTTGCCTATGATATACTCA+AGG | 0.633243 | 4.4:-11936548 | None:intergenic |
| GTTCGATAGAATCCCAAGAT+CGG | 0.634285 | 4.4:-11937312 | None:intergenic |
| CATAGCCACACTCTTACACA+TGG | 0.637053 | 4.4:+11936758 | MS.gene27966:CDS |
| TAGGCAGGAAGCAGGTCCGG+CGG | 0.638522 | 4.4:+11934494 | MS.gene27966:CDS |
| TGCTTTGAAAGGAATGACAA+CGG | 0.638848 | 4.4:+11937130 | MS.gene27966:CDS |
| GCAAAGAAGCCTAAGTTATG+GGG | 0.643860 | 4.4:+11937587 | MS.gene27966:CDS |
| AAAGGTACTCCCCATAACTT+AGG | 0.644859 | 4.4:-11937596 | None:intergenic |
| CTATTATACGAAAATCATCA+GGG | 0.647038 | 4.4:-11936623 | None:intergenic |
| TGGAGATTAAGGCTAGGAGT+GGG | 0.659365 | 4.4:+11934373 | MS.gene27966:CDS |
| GAAGAAGACGTTGAACTGGT+GGG | 0.664861 | 4.4:+11934404 | MS.gene27966:CDS |
| GCTGAAGAAACTAAGAACCC+TGG | 0.666018 | 4.4:+11936930 | MS.gene27966:CDS |
| GGTCCATGATCGAGCTACCG+CGG | 0.681679 | 4.4:-11936571 | None:intergenic |
| TGAGAAGCAATTGAACAAGG+TGG | 0.692961 | 4.4:+11937817 | MS.gene27966:CDS |
| CAATTGGAATGTCTCTACCA+GGG | 0.700717 | 4.4:-11936947 | None:intergenic |
| GCAGAGGGTGGCGAAATACG+AGG | 0.702759 | 4.4:-11936592 | None:intergenic |
| TCGATGGCGGCGGAGTACGT+AGG | 0.703593 | 4.4:+11934208 | MS.gene27966:CDS |
| TGCCTATGATATACTCAAGG+AGG | 0.704194 | 4.4:-11936545 | None:intergenic |
| GACAGCCATGTGTAAGAGTG+TGG | 0.708211 | 4.4:-11936763 | None:intergenic |
| TCAACAAGAGCAAACCAAGG+TGG | 0.728106 | 4.4:-11937218 | None:intergenic |
| AAAGAACGACTTCTTCCCGG+AGG | 0.732358 | 4.4:+11934248 | MS.gene27966:CDS |
| TCATCAACAAGAGCAAACCA+AGG | 0.735762 | 4.4:-11937221 | None:intergenic |
| GTATATCATAGGCAACGCCG+CGG | 0.783643 | 4.4:+11936554 | MS.gene27966:CDS |
| CCAGTCCCTATAAACCACAG+AGG | 0.796817 | 4.4:-11937539 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATATAAATATAAATTAA+AGG | - | chr4.4:11935750-11935769 | None:intergenic | 0.0% |
| !!! | TATAATTTTATTTTTTATTA+TGG | + | chr4.4:11935656-11935675 | MS.gene27966:intron | 0.0% |
| !! | AAAAATGAATTATATTAACA+CGG | + | chr4.4:11936322-11936341 | MS.gene27966:intron | 10.0% |
| !! | ATATAAAGATTATCAATAAA+AGG | - | chr4.4:11935965-11935984 | None:intergenic | 10.0% |
| !!! | ATTTGCATTAAATTTAATTT+AGG | + | chr4.4:11934654-11934673 | MS.gene27966:intron | 10.0% |
| !!! | TTATATTTTGAAGAAAAATA+AGG | + | chr4.4:11935469-11935488 | MS.gene27966:intron | 10.0% |
| !!! | TTTGCATTAAATTTAATTTA+GGG | + | chr4.4:11934655-11934674 | MS.gene27966:intron | 10.0% |
| !! | AAAAAAATTGTATTGAATGA+TGG | - | chr4.4:11935427-11935446 | None:intergenic | 15.0% |
| !! | ATATTGTGGAATTATAAATT+TGG | - | chr4.4:11935061-11935080 | None:intergenic | 15.0% |
| !! | ATTAAGACAATAAAATGTTA+AGG | + | chr4.4:11936117-11936136 | MS.gene27966:intron | 15.0% |
| !! | TATTGTGGAATTATAAATTT+GGG | - | chr4.4:11935060-11935079 | None:intergenic | 15.0% |
| !! | TGAAATTATTAAGAATTTGT+TGG | - | chr4.4:11935378-11935397 | None:intergenic | 15.0% |
| !! | TTGATAAAAAATCGTATATA+AGG | + | chr4.4:11937675-11937694 | MS.gene27966:CDS | 15.0% |
| !! | TTTAAGTCTATAAAAAAATG+TGG | + | chr4.4:11935219-11935238 | MS.gene27966:intron | 15.0% |
| !!! | AACAATATTGACAATATTTT+AGG | + | chr4.4:11934855-11934874 | MS.gene27966:intron | 15.0% |
| !!! | ATAATTTTTTGTTTACCTTT+AGG | - | chr4.4:11934737-11934756 | None:intergenic | 15.0% |
| !!! | TATATTCTTTTTGTGATTTA+GGG | + | chr4.4:11936255-11936274 | MS.gene27966:intron | 15.0% |
| !! | AAAAGTTGAATTCTCAATTA+TGG | - | chr4.4:11934832-11934851 | None:intergenic | 20.0% |
| !! | AAAGATTATCAATAAAAGGT+TGG | - | chr4.4:11935961-11935980 | None:intergenic | 20.0% |
| !! | AAAGTTGAATTCTCAATTAT+GGG | - | chr4.4:11934831-11934850 | None:intergenic | 20.0% |
| !! | AAATTAATTAATATGCATCG+AGG | - | chr4.4:11935181-11935200 | None:intergenic | 20.0% |
| !! | ACAACAAAGAAATAATAGAT+AGG | + | chr4.4:11934995-11935014 | MS.gene27966:intron | 20.0% |
| !! | ATACACTATTTATTCCAATA+TGG | - | chr4.4:11935726-11935745 | None:intergenic | 20.0% |
| !! | ATCTTATGGTAGTAAAATAT+CGG | - | chr4.4:11935622-11935641 | None:intergenic | 20.0% |
| !! | TAATTCCACAATATTAAAAG+TGG | + | chr4.4:11935067-11935086 | MS.gene27966:intron | 20.0% |
| !! | TGTGTATTCATGTAAATTAA+AGG | - | chr4.4:11935690-11935709 | None:intergenic | 20.0% |
| !! | TTAATAGCAATAGATAAAGA+AGG | - | chr4.4:11937635-11937654 | None:intergenic | 20.0% |
| !! | TTTATATAATAGCATCCTAA+AGG | + | chr4.4:11934719-11934738 | MS.gene27966:intron | 20.0% |
| !!! | AACTTGATGTTTTCTTTTAA+GGG | + | chr4.4:11935096-11935115 | MS.gene27966:intron | 20.0% |
| !!! | GTATATTCTTTTTGTGATTT+AGG | + | chr4.4:11936254-11936273 | MS.gene27966:intron | 20.0% |
| !!! | TAACTTGATGTTTTCTTTTA+AGG | + | chr4.4:11935095-11935114 | MS.gene27966:intron | 20.0% |
| ! | AAAATCGTATATAAGGTTTG+CGG | + | chr4.4:11937682-11937701 | MS.gene27966:CDS | 25.0% |
| ! | AAACGACAACTAAAAAAGAA+CGG | + | chr4.4:11936219-11936238 | MS.gene27966:intron | 25.0% |
| ! | AAATATTCCAGAACCAATAA+CGG | - | chr4.4:11934454-11934473 | None:intergenic | 25.0% |
| ! | AACATAAGCAAAGAAAAGTA+CGG | - | chr4.4:11936886-11936905 | None:intergenic | 25.0% |
| ! | AATATAAAACCCTCCTTATT+TGG | - | chr4.4:11935456-11935475 | None:intergenic | 25.0% |
| ! | AATTGGAATTTCAGCTTATT+GGG | + | chr4.4:11937475-11937494 | MS.gene27966:CDS | 25.0% |
| ! | ACACTCAAAAGTTTATAAGT+TGG | - | chr4.4:11934772-11934791 | None:intergenic | 25.0% |
| ! | ACTATTATACGAAAATCATC+AGG | - | chr4.4:11936627-11936646 | None:intergenic | 25.0% |
| ! | AGAATCTTAGAGAATTCAAA+AGG | - | chr4.4:11935145-11935164 | None:intergenic | 25.0% |
| ! | CAAATAAAATTGAACTCTTG+CGG | + | chr4.4:11934794-11934813 | MS.gene27966:intron | 25.0% |
| ! | CTAAACATTAGTGAATCTTA+TGG | - | chr4.4:11935636-11935655 | None:intergenic | 25.0% |
| ! | CTATTATACGAAAATCATCA+GGG | - | chr4.4:11936626-11936645 | None:intergenic | 25.0% |
| ! | GAGAGTTTGAAAAAAAAGAA+AGG | - | chr4.4:11935541-11935560 | None:intergenic | 25.0% |
| ! | TATAAATTTGGGTGCTTTAT+TGG | - | chr4.4:11935049-11935068 | None:intergenic | 25.0% |
| !! | AAAAAAAAGAAAGGTGTAAG+TGG | - | chr4.4:11935532-11935551 | None:intergenic | 25.0% |
| !! | ATATAAAACCCTCCTTATTT+GGG | - | chr4.4:11935455-11935474 | None:intergenic | 25.0% |
| !! | ATTGTATTGAATGATGGTTT+TGG | - | chr4.4:11935421-11935440 | None:intergenic | 25.0% |
| !! | TTGTATTGAATGATGGTTTT+GGG | - | chr4.4:11935420-11935439 | None:intergenic | 25.0% |
| !! | TTTGTTTATCTTTTCACTTG+TGG | + | chr4.4:11937352-11937371 | MS.gene27966:CDS | 25.0% |
| !! | TTTTATCAATAGTTCCAAGA+AGG | - | chr4.4:11937664-11937683 | None:intergenic | 25.0% |
| !!! | AATAGCCACTTTTAATATTG+TGG | - | chr4.4:11935075-11935094 | None:intergenic | 25.0% |
| !!! | GCTTTATTGGTTTTAACTTT+GGG | - | chr4.4:11935036-11935055 | None:intergenic | 25.0% |
| !!! | TGCTTTATTGGTTTTAACTT+TGG | - | chr4.4:11935037-11935056 | None:intergenic | 25.0% |
| !!! | TTGATTATTGGTTCTTCAAT+TGG | + | chr4.4:11937458-11937477 | MS.gene27966:CDS | 25.0% |
| !!! | TTTTTTTAGTTCCCCAAATA+AGG | + | chr4.4:11935440-11935459 | MS.gene27966:intron | 25.0% |
| AAACTACGGAAAATCTGTTA+TGG | + | chr4.4:11934290-11934309 | MS.gene27966:CDS | 30.0% | |
| AACGTAATTGTTATAGCACA+AGG | + | chr4.4:11936347-11936366 | MS.gene27966:intron | 30.0% | |
| AAGGAGATATTATTCAAGTG+AGG | + | chr4.4:11937391-11937410 | MS.gene27966:CDS | 30.0% | |
| AATTGTATCCATTCTACAAG+AGG | - | chr4.4:11935871-11935890 | None:intergenic | 30.0% | |
| ATGGATACAATTACTCGAAA+AGG | + | chr4.4:11935879-11935898 | MS.gene27966:intron | 30.0% | |
| ATTATCTTCATAGTAATCGC+CGG | + | chr4.4:11936786-11936805 | MS.gene27966:CDS | 30.0% | |
| ATTGAGATTGTAGCATTCAT+AGG | - | chr4.4:11937260-11937279 | None:intergenic | 30.0% | |
| CAATTGGAATTTCAGCTTAT+TGG | + | chr4.4:11937474-11937493 | MS.gene27966:CDS | 30.0% | |
| CTCACAAAACAAATAGACTA+AGG | - | chr4.4:11935596-11935615 | None:intergenic | 30.0% | |
| GATCAGATTAAACATACTAG+TGG | + | chr4.4:11937779-11937798 | MS.gene27966:CDS | 30.0% | |
| GCTATTAACATATTCCTTCT+TGG | + | chr4.4:11937647-11937666 | MS.gene27966:CDS | 30.0% | |
| GCTTACTTAAGAGTAGAATT+GGG | + | chr4.4:11936489-11936508 | MS.gene27966:CDS | 30.0% | |
| TAAACCTAGAGTAGAGTAAT+CGG | - | chr4.4:11934703-11934722 | None:intergenic | 30.0% | |
| TGACATATTCGTGATTGTTT+AGG | - | chr4.4:11936377-11936396 | None:intergenic | 30.0% | |
| TGCTTACTTAAGAGTAGAAT+TGG | + | chr4.4:11936488-11936507 | MS.gene27966:CDS | 30.0% | |
| ! | CTTGTATACTATGTGCTATT+GGG | + | chr4.4:11937722-11937741 | MS.gene27966:CDS | 30.0% |
| ! | GTACTTTTCTTTGCTTATGT+TGG | + | chr4.4:11936885-11936904 | MS.gene27966:CDS | 30.0% |
| ! | GTTTTTCCCTCTTATATTTC+AGG | + | chr4.4:11936456-11936475 | MS.gene27966:intron | 30.0% |
| ! | TATAAAACCCTCCTTATTTG+GGG | - | chr4.4:11935454-11935473 | None:intergenic | 30.0% |
| ! | TTGTATACTATGTGCTATTG+GGG | + | chr4.4:11937723-11937742 | MS.gene27966:CDS | 30.0% |
| ! | TTTAACTTTGGGTGCTTTAT+TGG | - | chr4.4:11935025-11935044 | None:intergenic | 30.0% |
| !! | TAAGAGGTACTCTACTAAAA+AGG | - | chr4.4:11935936-11935955 | None:intergenic | 30.0% |
| AACAATATAACTGCTCGTCT+TGG | + | chr4.4:11935819-11935838 | MS.gene27966:intron | 35.0% | |
| AAGAAATAGAGGACATTAGG+AGG | - | chr4.4:11935509-11935528 | None:intergenic | 35.0% | |
| ATAGATAAAGAAGGTAGCCA+AGG | - | chr4.4:11937626-11937645 | None:intergenic | 35.0% | |
| ATCCTCCTTGAGTATATCAT+AGG | + | chr4.4:11936543-11936562 | MS.gene27966:CDS | 35.0% | |
| ATTGAACCAACTAGACCAAT+TGG | - | chr4.4:11936966-11936985 | None:intergenic | 35.0% | |
| CAAGTGAGGTAACTACAAAA+GGG | + | chr4.4:11937405-11937424 | MS.gene27966:CDS | 35.0% | |
| CCAATAGCACATAGTATACA+AGG | - | chr4.4:11937724-11937743 | None:intergenic | 35.0% | |
| CCTTGTATACTATGTGCTAT+TGG | + | chr4.4:11937721-11937740 | MS.gene27966:CDS | 35.0% | |
| GACACACAATGAGATTTACT+TGG | - | chr4.4:11937433-11937452 | None:intergenic | 35.0% | |
| GATACAATTACTCGAAAAGG+TGG | + | chr4.4:11935882-11935901 | MS.gene27966:intron | 35.0% | |
| GCTAAGTACATTGTTTCACT+AGG | + | chr4.4:11937107-11937126 | MS.gene27966:CDS | 35.0% | |
| GGTACTCTACTAAAAAGGAT+TGG | - | chr4.4:11935931-11935950 | None:intergenic | 35.0% | |
| TCAAGTGAGGTAACTACAAA+AGG | + | chr4.4:11937404-11937423 | MS.gene27966:CDS | 35.0% | |
| TGGAAGAAATAGAGGACATT+AGG | - | chr4.4:11935512-11935531 | None:intergenic | 35.0% | |
| TTGCTTTCTTTACCGATCTT+GGG | + | chr4.4:11937300-11937319 | MS.gene27966:CDS | 35.0% | |
| TTGTTCCTCTGTGGTTTATA+GGG | + | chr4.4:11937534-11937553 | MS.gene27966:CDS | 35.0% | |
| TTTAAGAGTTGGGGAAACTA+CGG | + | chr4.4:11934276-11934295 | MS.gene27966:CDS | 35.0% | |
| TTTCCCTCTTATATTTCAGG+TGG | + | chr4.4:11936459-11936478 | MS.gene27966:intron | 35.0% | |
| TTTGTTCCTCTGTGGTTTAT+AGG | + | chr4.4:11937533-11937552 | MS.gene27966:CDS | 35.0% | |
| ! | CGAGTTTGAAGTAGAATAGA+GGG | - | chr4.4:11935564-11935583 | None:intergenic | 35.0% |
| ! | GAGTTTGAAGTAGAATAGAG+GGG | - | chr4.4:11935563-11935582 | None:intergenic | 35.0% |
| ! | TATCTTTTCACTTGTGGCAT+TGG | + | chr4.4:11937358-11937377 | MS.gene27966:CDS | 35.0% |
| ! | TCTGGAATATTTGTGCTTAC+CGG | + | chr4.4:11934462-11934481 | MS.gene27966:CDS | 35.0% |
| ! | TGTAATGTCGTTTGTCATCT+CGG | + | chr4.4:11934518-11934537 | MS.gene27966:CDS | 35.0% |
| ! | TTCCCTCTTATATTTCAGGT+GGG | + | chr4.4:11936460-11936479 | MS.gene27966:intron | 35.0% |
| ! | TTTACCGATTACTCTACTCT+AGG | + | chr4.4:11934696-11934715 | MS.gene27966:intron | 35.0% |
| ! | TTTAGTTCCCCAAATAAGGA+GGG | + | chr4.4:11935444-11935463 | MS.gene27966:intron | 35.0% |
| !! | CAATAAAAGGTTGGCTTAAG+AGG | - | chr4.4:11935952-11935971 | None:intergenic | 35.0% |
| !! | GGCTTATAGCTCTAATACTT+CGG | - | chr4.4:11935910-11935929 | None:intergenic | 35.0% |
| !! | GTGTGTCTTGTGTTGATTAT+TGG | + | chr4.4:11937446-11937465 | MS.gene27966:CDS | 35.0% |
| !! | TGCTTTGAAAGGAATGACAA+CGG | + | chr4.4:11937130-11937149 | MS.gene27966:CDS | 35.0% |
| !! | TTGTTATACAGAGTTTGCTG+TGG | + | chr4.4:11934566-11934585 | MS.gene27966:CDS | 35.0% |
| !!! | TATTGAATGATGGTTTTGGG+AGG | - | chr4.4:11935417-11935436 | None:intergenic | 35.0% |
| !!! | TCTTTGGCTTTTTGTTCCAA+TGG | + | chr4.4:11937565-11937584 | MS.gene27966:CDS | 35.0% |
| !!! | TTTTAGTTCCCCAAATAAGG+AGG | + | chr4.4:11935443-11935462 | MS.gene27966:intron | 35.0% |
| AAACCACAGAGGAACAAAGA+TGG | - | chr4.4:11937531-11937550 | None:intergenic | 40.0% | |
| AAATAGAGGACATTAGGAGG+AGG | - | chr4.4:11935506-11935525 | None:intergenic | 40.0% | |
| AACAGTGAGAATGGATGGAT+TGG | + | chr4.4:11937500-11937519 | MS.gene27966:CDS | 40.0% | |
| AACTTAGGCTTCTTTGCCAT+TGG | - | chr4.4:11937584-11937603 | None:intergenic | 40.0% | |
| AATAGAGGACATTAGGAGGA+GGG | - | chr4.4:11935505-11935524 | None:intergenic | 40.0% | |
| ACAAAGTAGCAATCGACAAG+AGG | - | chr4.4:11937337-11937356 | None:intergenic | 40.0% | |
| ACAATCCACCTCTTGTAGAA+TGG | + | chr4.4:11935860-11935879 | MS.gene27966:intron | 40.0% | |
| AGATGAAGAAGACGTTGAAC+TGG | + | chr4.4:11934400-11934419 | MS.gene27966:CDS | 40.0% | |
| ATACTCAAGGAGGATGTTTC+CGG | - | chr4.4:11936538-11936557 | None:intergenic | 40.0% | |
| ATGACACACTTCAGCCATAT+TGG | + | chr4.4:11935709-11935728 | MS.gene27966:intron | 40.0% | |
| CAATAGCAATAGGGTCAAGA+TGG | - | chr4.4:11936674-11936693 | None:intergenic | 40.0% | |
| CAATTGAACAAGGTGGAACA+GGG | + | chr4.4:11937824-11937843 | MS.gene27966:CDS | 40.0% | |
| CAATTGGAATGTCTCTACCA+GGG | - | chr4.4:11936950-11936969 | None:intergenic | 40.0% | |
| CACAATATGAACCCTGACTA+TGG | + | chr4.4:11936648-11936667 | MS.gene27966:CDS | 40.0% | |
| CATAGTCAGGGTTCATATTG+TGG | - | chr4.4:11936650-11936669 | None:intergenic | 40.0% | |
| CGTATATAAGGTTTGCGGTT+TGG | + | chr4.4:11937687-11937706 | MS.gene27966:CDS | 40.0% | |
| CGTTGCCTATGATATACTCA+AGG | - | chr4.4:11936551-11936570 | None:intergenic | 40.0% | |
| CTGTTATGGAAACACCTTTC+CGG | + | chr4.4:11934304-11934323 | MS.gene27966:CDS | 40.0% | |
| CTTTGATGCAGTTTCAACCA+TGG | + | chr4.4:11936908-11936927 | MS.gene27966:CDS | 40.0% | |
| GACCCACCTGAAATATAAGA+GGG | - | chr4.4:11936465-11936484 | None:intergenic | 40.0% | |
| GCAAAGAAGCCTAAGTTATG+GGG | + | chr4.4:11937587-11937606 | MS.gene27966:CDS | 40.0% | |
| GCACTAAAAGCAACAGAGAA+AGG | - | chr4.4:11937071-11937090 | None:intergenic | 40.0% | |
| GGCAAAGAAGCCTAAGTTAT+GGG | + | chr4.4:11937586-11937605 | MS.gene27966:CDS | 40.0% | |
| GGTGTAAGTGGAAGAAATAG+AGG | - | chr4.4:11935520-11935539 | None:intergenic | 40.0% | |
| GGTTGAGAAGCAATTGAACA+AGG | + | chr4.4:11937814-11937833 | MS.gene27966:CDS | 40.0% | |
| GTTCGATAGAATCCCAAGAT+CGG | - | chr4.4:11937315-11937334 | None:intergenic | 40.0% | |
| GTTCTTAGTTTCTTCAGCCA+TGG | - | chr4.4:11936928-11936947 | None:intergenic | 40.0% | |
| TATTGGGCTAACAGTGAGAA+TGG | + | chr4.4:11937491-11937510 | MS.gene27966:CDS | 40.0% | |
| TCAAAAGAACGACTTCTTCC+CGG | + | chr4.4:11934245-11934264 | MS.gene27966:CDS | 40.0% | |
| TCATCAACAAGAGCAAACCA+AGG | - | chr4.4:11937224-11937243 | None:intergenic | 40.0% | |
| TGACCCACCTGAAATATAAG+AGG | - | chr4.4:11936466-11936485 | None:intergenic | 40.0% | |
| TGAGAAGCAATTGAACAAGG+TGG | + | chr4.4:11937817-11937836 | MS.gene27966:CDS | 40.0% | |
| TGCCTATGATATACTCAAGG+AGG | - | chr4.4:11936548-11936567 | None:intergenic | 40.0% | |
| TGGCAAAGAAGCCTAAGTTA+TGG | + | chr4.4:11937585-11937604 | MS.gene27966:CDS | 40.0% | |
| TGTATCCATTCTACAAGAGG+TGG | - | chr4.4:11935868-11935887 | None:intergenic | 40.0% | |
| TGTGGCTATGTAGTTGAAGA+TGG | - | chr4.4:11936748-11936767 | None:intergenic | 40.0% | |
| TTTGTTGCCTTTATAGCTGC+CGG | + | chr4.4:11936516-11936535 | MS.gene27966:CDS | 40.0% | |
| ! | AGTGAAGTCGTGGAAGTTTT+CGG | - | chr4.4:11936829-11936848 | None:intergenic | 40.0% |
| ! | ATCAGGGTTTTTGTTGCAGA+GGG | - | chr4.4:11936610-11936629 | None:intergenic | 40.0% |
| ! | GACATTCCAATTGGTCTAGT+TGG | + | chr4.4:11936957-11936976 | MS.gene27966:CDS | 40.0% |
| ! | GCGAGTTTGAAGTAGAATAG+AGG | - | chr4.4:11935565-11935584 | None:intergenic | 40.0% |
| ! | GCTCTTGTTGATGAAAGAAC+AGG | + | chr4.4:11937230-11937249 | MS.gene27966:CDS | 40.0% |
| ! | GGGCATATCTGCTTTGTTAT+CGG | + | chr4.4:11934539-11934558 | MS.gene27966:CDS | 40.0% |
| ! | GTAATGTCGTTTGTCATCTC+GGG | + | chr4.4:11934519-11934538 | MS.gene27966:CDS | 40.0% |
| ! | GTTGCTTTCTTTACCGATCT+TGG | + | chr4.4:11937299-11937318 | MS.gene27966:CDS | 40.0% |
| ! | GTTTCACTAGGTGCTTTGAA+AGG | + | chr4.4:11937119-11937138 | MS.gene27966:CDS | 40.0% |
| !! | AAAGGTACTCCCCATAACTT+AGG | - | chr4.4:11937599-11937618 | None:intergenic | 40.0% |
| !! | ACATACTAGTGGTTCTGATC+AGG | + | chr4.4:11937790-11937809 | MS.gene27966:CDS | 40.0% |
| !! | AGAGTTTGCTGTGGAAATTC+CGG | + | chr4.4:11934575-11934594 | MS.gene27966:CDS | 40.0% |
| !! | AGGAATGACAACGGTTTTGT+TGG | + | chr4.4:11937139-11937158 | MS.gene27966:CDS | 40.0% |
| !! | GTAGAAAAAGTACCTGCAAC+CGG | - | chr4.4:11934597-11934616 | None:intergenic | 40.0% |
| !! | GTTTTGTTGGTTAGTGCTGT+TGG | + | chr4.4:11937152-11937171 | MS.gene27966:CDS | 40.0% |
| !! | TAAGTTATGGGGAGTACCTT+TGG | + | chr4.4:11937598-11937617 | MS.gene27966:CDS | 40.0% |
| !! | TTTGGTGCTGTAAACTGCAA+GGG | - | chr4.4:11936718-11936737 | None:intergenic | 40.0% |
| !!! | AATGATGGTTTTGGGAGGTT+TGG | - | chr4.4:11935412-11935431 | None:intergenic | 40.0% |
| !!! | CTGTTGCTTTTAGTGCTGTT+GGG | + | chr4.4:11937075-11937094 | MS.gene27966:CDS | 40.0% |
| !!! | TCTGTTGCTTTTAGTGCTGT+TGG | + | chr4.4:11937074-11937093 | MS.gene27966:CDS | 40.0% |
| AAACGATCCTTCAACCGGAA+AGG | - | chr4.4:11934321-11934340 | None:intergenic | 45.0% | |
| AACTCTTAAACGACTCCTCC+GGG | - | chr4.4:11934266-11934285 | None:intergenic | 45.0% | |
| ACAAACGACATTACAACCGC+CGG | - | chr4.4:11934513-11934532 | None:intergenic | 45.0% | |
| ACACCATCTTTGTTCCTCTG+TGG | + | chr4.4:11937525-11937544 | MS.gene27966:CDS | 45.0% | |
| ACTAGGGCTGCAATAGCAAT+AGG | - | chr4.4:11936684-11936703 | None:intergenic | 45.0% | |
| ATAGAGGACATTAGGAGGAG+GGG | - | chr4.4:11935504-11935523 | None:intergenic | 45.0% | |
| ATCTAGTGATCATGCAGAGC+TGG | + | chr4.4:11934350-11934369 | MS.gene27966:CDS | 45.0% | |
| ATTTGTGCTTACCGGACTTG+AGG | + | chr4.4:11934470-11934489 | MS.gene27966:CDS | 45.0% | |
| CAACTCTTAAACGACTCCTC+CGG | - | chr4.4:11934267-11934286 | None:intergenic | 45.0% | |
| CATAGCCACACTCTTACACA+TGG | + | chr4.4:11936758-11936777 | MS.gene27966:CDS | 45.0% | |
| CCAATTGGAATGTCTCTACC+AGG | - | chr4.4:11936951-11936970 | None:intergenic | 45.0% | |
| CCTGGTAGAGACATTCCAAT+TGG | + | chr4.4:11936948-11936967 | MS.gene27966:CDS | 45.0% | |
| CTAGGGCTGCAATAGCAATA+GGG | - | chr4.4:11936683-11936702 | None:intergenic | 45.0% | |
| CTTGCAGTTTACAGCACCAA+AGG | + | chr4.4:11936717-11936736 | MS.gene27966:CDS | 45.0% | |
| GAAGAAGACGTTGAACTGGT+GGG | + | chr4.4:11934404-11934423 | MS.gene27966:CDS | 45.0% | |
| GAGGAGTCGTTTAAGAGTTG+GGG | + | chr4.4:11934267-11934286 | MS.gene27966:CDS | 45.0% | |
| GATGTTTCCGGCAGCTATAA+AGG | - | chr4.4:11936526-11936545 | None:intergenic | 45.0% | |
| GCAATTGAACAAGGTGGAAC+AGG | + | chr4.4:11937823-11937842 | MS.gene27966:CDS | 45.0% | |
| GCTGAAGAAACTAAGAACCC+TGG | + | chr4.4:11936930-11936949 | MS.gene27966:CDS | 45.0% | |
| GGAGGAGTCGTTTAAGAGTT+GGG | + | chr4.4:11934266-11934285 | MS.gene27966:CDS | 45.0% | |
| GTTGAAGATGGAAGAGCCTT+TGG | - | chr4.4:11936736-11936755 | None:intergenic | 45.0% | |
| TCAACAAGAGCAAACCAAGG+TGG | - | chr4.4:11937221-11937240 | None:intergenic | 45.0% | |
| TGAAGAAGACGTTGAACTGG+TGG | + | chr4.4:11934403-11934422 | MS.gene27966:CDS | 45.0% | |
| TGGAGATTAAGGCTAGGAGT+GGG | + | chr4.4:11934373-11934392 | MS.gene27966:CDS | 45.0% | |
| TTCCACGACTTCACTCCTTT+CGG | + | chr4.4:11936834-11936853 | MS.gene27966:CDS | 45.0% | |
| ! | ATAAGGTTTGCGGTTTGGAC+AGG | + | chr4.4:11937692-11937711 | MS.gene27966:CDS | 45.0% |
| ! | CATCAGGGTTTTTGTTGCAG+AGG | - | chr4.4:11936611-11936630 | None:intergenic | 45.0% |
| ! | GTGAAGTCGTGGAAGTTTTC+GGG | - | chr4.4:11936828-11936847 | None:intergenic | 45.0% |
| ! | TAAGGTTTGCGGTTTGGACA+GGG | + | chr4.4:11937693-11937712 | MS.gene27966:CDS | 45.0% |
| ! | TAGTGCTGTTGGGATGGATT+GGG | + | chr4.4:11937085-11937104 | MS.gene27966:CDS | 45.0% |
| ! | TTAGTGCTGTTGGGATGGAT+TGG | + | chr4.4:11937084-11937103 | MS.gene27966:CDS | 45.0% |
| ! | TTATAGGGACTGGTGCTCTT+TGG | + | chr4.4:11937549-11937568 | MS.gene27966:CDS | 45.0% |
| !! | CTTTGGTGCTGTAAACTGCA+AGG | - | chr4.4:11936719-11936738 | None:intergenic | 45.0% |
| !! | GACTTGATGTGGTTCGGTAT+CGG | + | chr4.4:11934426-11934445 | MS.gene27966:CDS | 45.0% |
| !! | TACTAGTGGTTCTGATCAGG+AGG | + | chr4.4:11937793-11937812 | MS.gene27966:CDS | 45.0% |
| !! | TGCTTTTAGTGCTGTTGGGA+TGG | + | chr4.4:11937079-11937098 | MS.gene27966:CDS | 45.0% |
| !! | TGGCATTGGCACTTCTAGTA+AGG | + | chr4.4:11937372-11937391 | MS.gene27966:CDS | 45.0% |
| !! | AAAAAATTATAAAAAAAGTA+CGG | - | chr4.4:11934929-11934948 | None:intergenic | 5.0% |
| !!! | AAGTTTTTTTTTTTTAATAT+TGG | + | chr4.4:11936420-11936439 | MS.gene27966:intron | 5.0% |
| AAAGAACGACTTCTTCCCGG+AGG | + | chr4.4:11934248-11934267 | MS.gene27966:CDS | 50.0% | |
| AAGGGCTGTGATGGCTACTA+GGG | - | chr4.4:11936700-11936719 | None:intergenic | 50.0% | |
| ACATTAGGAGGAGGGGCTTT+GGG | - | chr4.4:11935497-11935516 | None:intergenic | 50.0% | |
| AGCTGGTGGAGATTAAGGCT+AGG | + | chr4.4:11934367-11934386 | MS.gene27966:CDS | 50.0% | |
| CCAGTCCCTATAAACCACAG+AGG | - | chr4.4:11937542-11937561 | None:intergenic | 50.0% | |
| CCTCTGTGGTTTATAGGGAC+TGG | + | chr4.4:11937539-11937558 | MS.gene27966:CDS | 50.0% | |
| CGGAGGAGTCGTTTAAGAGT+TGG | + | chr4.4:11934265-11934284 | MS.gene27966:CDS | 50.0% | |
| GAAGGTAGCCAAGGAACCAA+AGG | - | chr4.4:11937617-11937636 | None:intergenic | 50.0% | |
| GACAGCCATGTGTAAGAGTG+TGG | - | chr4.4:11936766-11936785 | None:intergenic | 50.0% | |
| GCAGCAAACGATCCTTCAAC+CGG | - | chr4.4:11934326-11934345 | None:intergenic | 50.0% | |
| GGAAACACCTTTCCGGTTGA+AGG | + | chr4.4:11934311-11934330 | MS.gene27966:CDS | 50.0% | |
| GGGCTAACAGTGAGAATGGA+TGG | + | chr4.4:11937495-11937514 | MS.gene27966:CDS | 50.0% | |
| GGTCAAGATGGCCATAGTCA+GGG | - | chr4.4:11936662-11936681 | None:intergenic | 50.0% | |
| GTAAACTGCAAGGGCTGTGA+TGG | - | chr4.4:11936709-11936728 | None:intergenic | 50.0% | |
| GTACTCACATGATGCCACCT+TGG | + | chr4.4:11937204-11937223 | MS.gene27966:CDS | 50.0% | |
| GTATATCATAGGCAACGCCG+CGG | + | chr4.4:11936554-11936573 | MS.gene27966:CDS | 50.0% | |
| GTGGAGATTAAGGCTAGGAG+TGG | + | chr4.4:11934372-11934391 | MS.gene27966:CDS | 50.0% | |
| TAGTGATCATGCAGAGCTGG+TGG | + | chr4.4:11934353-11934372 | MS.gene27966:CDS | 50.0% | |
| TCCACGACTTCACTCCTTTC+GGG | + | chr4.4:11936835-11936854 | MS.gene27966:CDS | 50.0% | |
| TGAACTGGTGGGACTTGATG+TGG | + | chr4.4:11934415-11934434 | MS.gene27966:CDS | 50.0% | |
| TGCAGAGCTGGTGGAGATTA+AGG | + | chr4.4:11934362-11934381 | MS.gene27966:CDS | 50.0% | |
| TGGTGGGACTTGATGTGGTT+CGG | + | chr4.4:11934420-11934439 | MS.gene27966:CDS | 50.0% | |
| TTCACTCCTTTCGGGCTTCA+CGG | + | chr4.4:11936843-11936862 | MS.gene27966:CDS | 50.0% | |
| ! | AGGGTTTTTGTTGCAGAGGG+TGG | - | chr4.4:11936607-11936626 | None:intergenic | 50.0% |
| !! | GGGCTTGGCTTTGATTAGAC+CGG | - | chr4.4:11936808-11936827 | None:intergenic | 50.0% |
| ACCATACCGTGAAGCCCGAA+AGG | - | chr4.4:11936852-11936871 | None:intergenic | 55.0% | |
| CAAGGGCTGTGATGGCTACT+AGG | - | chr4.4:11936701-11936720 | None:intergenic | 55.0% | |
| CATTAGGAGGAGGGGCTTTG+GGG | - | chr4.4:11935496-11935515 | None:intergenic | 55.0% | |
| GACATTAGGAGGAGGGGCTT+TGG | - | chr4.4:11935498-11935517 | None:intergenic | 55.0% | |
| GCTGTGGAAATTCCGGTTGC+AGG | + | chr4.4:11934582-11934601 | MS.gene27966:CDS | 55.0% | |
| GGGTCAAGATGGCCATAGTC+AGG | - | chr4.4:11936663-11936682 | None:intergenic | 55.0% | |
| TCCTTTCGGGCTTCACGGTA+TGG | + | chr4.4:11936848-11936867 | MS.gene27966:CDS | 55.0% | |
| TGCTTACCGGACTTGAGGCT+AGG | + | chr4.4:11934475-11934494 | MS.gene27966:CDS | 55.0% | |
| TTCCTGCCTAGCCTCAAGTC+CGG | - | chr4.4:11934484-11934503 | None:intergenic | 55.0% | |
| ! | ATTAGGAGGAGGGGCTTTGG+GGG | - | chr4.4:11935495-11935514 | None:intergenic | 55.0% |
| !! | ATCGGCGCCGTTATTGGTTC+TGG | + | chr4.4:11934444-11934463 | MS.gene27966:CDS | 55.0% |
| !! | GGGGAGTACCTTTGGTTCCT+TGG | + | chr4.4:11937606-11937625 | MS.gene27966:CDS | 55.0% |
| !! | GTCGTGGAAGTTTTCGGGCT+TGG | - | chr4.4:11936823-11936842 | None:intergenic | 55.0% |
| !! | TTCGGTATCGGCGCCGTTAT+TGG | + | chr4.4:11934438-11934457 | MS.gene27966:CDS | 55.0% |
| CTTGAGGCTAGGCAGGAAGC+AGG | + | chr4.4:11934486-11934505 | MS.gene27966:CDS | 60.0% | |
| GCAGAGGGTGGCGAAATACG+AGG | - | chr4.4:11936595-11936614 | None:intergenic | 60.0% | |
| GCAGTTGGAGAGGTGGTCGA+TGG | + | chr4.4:11934192-11934211 | MS.gene27966:CDS | 60.0% | |
| GCCCGAAAGGAGTGAAGTCG+TGG | - | chr4.4:11936839-11936858 | None:intergenic | 60.0% | |
| GGTCCATGATCGAGCTACCG+CGG | - | chr4.4:11936574-11936593 | None:intergenic | 60.0% | |
| GTTGGAGAGGTGGTCGATGG+CGG | + | chr4.4:11934195-11934214 | MS.gene27966:CDS | 60.0% | |
| TACCGGACTTGAGGCTAGGC+AGG | + | chr4.4:11934479-11934498 | MS.gene27966:CDS | 60.0% | |
| ACGCCGCGGTAGCTCGATCA+TGG | + | chr4.4:11936568-11936587 | MS.gene27966:CDS | 65.0% | |
| GGCTAGGCAGGAAGCAGGTC+CGG | + | chr4.4:11934491-11934510 | MS.gene27966:CDS | 65.0% | |
| TAGGCAGGAAGCAGGTCCGG+CGG | + | chr4.4:11934494-11934513 | MS.gene27966:CDS | 65.0% | |
| ! | TCGATGGCGGCGGAGTACGT+AGG | + | chr4.4:11934208-11934227 | MS.gene27966:CDS | 65.0% |
| GGCGGCGGAGTACGTAGGAG+AGG | + | chr4.4:11934213-11934232 | MS.gene27966:CDS | 70.0% | |
| ! | GGAGAGGTGGTCGATGGCGG+CGG | + | chr4.4:11934198-11934217 | MS.gene27966:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 11934189 | 11937877 | 11934189 | ID=MS.gene27966 |
| chr4.4 | mRNA | 11934189 | 11937877 | 11934189 | ID=MS.gene27966.t1;Parent=MS.gene27966 |
| chr4.4 | exon | 11934189 | 11934603 | 11934189 | ID=MS.gene27966.t1.exon1;Parent=MS.gene27966.t1 |
| chr4.4 | CDS | 11934189 | 11934603 | 11934189 | ID=cds.MS.gene27966.t1;Parent=MS.gene27966.t1 |
| chr4.4 | exon | 11936478 | 11937877 | 11936478 | ID=MS.gene27966.t1.exon2;Parent=MS.gene27966.t1 |
| chr4.4 | CDS | 11936478 | 11937877 | 11936478 | ID=cds.MS.gene27966.t1;Parent=MS.gene27966.t1 |
| Gene Sequence |
| Protein sequence |
