Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27969.t1 | XP_003630017.1 | 99 | 583 | 6 | 0 | 4 | 586 | 17 | 599 | 0.00E+00 | 1110.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27969.t1 | Q84MA5 | 67.1 | 553 | 181 | 1 | 10 | 561 | 16 | 568 | 2.3e-211 | 736.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27969.t1 | G7L9L9 | 99.0 | 583 | 6 | 0 | 4 | 586 | 17 | 599 | 0.0e+00 | 1110.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene27969 | MS.gene41795 | PPI |
| MS.gene27969 | MS.gene00402 | PPI |
| MS.gene007811 | MS.gene27969 | PPI |
| MS.gene27969 | MS.gene47297 | PPI |
| MS.gene27969 | MS.gene49831 | PPI |
| MS.gene41792 | MS.gene27969 | PPI |
| MS.gene27969 | MS.gene041367 | PPI |
| MS.gene27969 | MS.gene58674 | PPI |
| MS.gene27969 | MS.gene08137 | PPI |
| MS.gene27969 | MS.gene32277 | PPI |
| MS.gene27969 | MS.gene042480 | PPI |
| MS.gene38965 | MS.gene27969 | PPI |
| MS.gene27969 | MS.gene41790 | PPI |
| MS.gene032361 | MS.gene27969 | PPI |
| MS.gene27969 | MS.gene007812 | PPI |
| MS.gene27969 | MS.gene08148 | PPI |
| MS.gene27969 | MS.gene38964 | PPI |
| MS.gene27969 | MS.gene08144 | PPI |
| MS.gene27969 | MS.gene042491 | PPI |
| MS.gene27969 | MS.gene073450 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27969.t1 | MTR_8g089360 | 98.801 | 584 | 7 | 0 | 3 | 586 | 16 | 599 | 0.0 | 1179 |
| MS.gene27969.t1 | MTR_8g089360 | 99.141 | 582 | 5 | 0 | 5 | 586 | 1 | 582 | 0.0 | 1179 |
| MS.gene27969.t1 | MTR_8g089320 | 74.216 | 574 | 144 | 3 | 13 | 582 | 21 | 594 | 0.0 | 860 |
| MS.gene27969.t1 | MTR_1g030660 | 60.997 | 582 | 221 | 3 | 3 | 583 | 8 | 584 | 0.0 | 721 |
| MS.gene27969.t1 | MTR_2g035430 | 56.743 | 571 | 245 | 2 | 12 | 581 | 20 | 589 | 0.0 | 677 |
| MS.gene27969.t1 | MTR_8g089340 | 73.154 | 447 | 115 | 2 | 141 | 582 | 1 | 447 | 0.0 | 622 |
| MS.gene27969.t1 | MTR_8g461380 | 50.268 | 559 | 274 | 3 | 12 | 567 | 27 | 584 | 0.0 | 553 |
| MS.gene27969.t1 | MTR_1g111740 | 42.832 | 579 | 306 | 6 | 20 | 583 | 6 | 574 | 4.15e-154 | 455 |
| MS.gene27969.t1 | MTR_4g099270 | 39.817 | 545 | 313 | 6 | 52 | 585 | 10 | 550 | 9.56e-124 | 376 |
| MS.gene27969.t1 | MTR_4g099270 | 44.828 | 377 | 204 | 2 | 24 | 396 | 3 | 379 | 9.42e-104 | 319 |
| MS.gene27969.t1 | MTR_4g099270 | 37.330 | 442 | 262 | 6 | 155 | 585 | 1 | 438 | 5.05e-90 | 285 |
| MS.gene27969.t1 | MTR_4g099270 | 43.607 | 305 | 168 | 2 | 24 | 324 | 3 | 307 | 2.38e-78 | 250 |
| MS.gene27969.t1 | MTR_7g086510 | 35.279 | 394 | 248 | 2 | 52 | 438 | 26 | 419 | 6.51e-71 | 240 |
| MS.gene27969.t1 | MTR_6g027630 | 34.434 | 424 | 260 | 5 | 27 | 438 | 7 | 424 | 6.74e-69 | 233 |
| MS.gene27969.t1 | MTR_7g007850 | 32.270 | 533 | 341 | 12 | 46 | 563 | 29 | 556 | 1.18e-68 | 233 |
| MS.gene27969.t1 | MTR_6g027630 | 34.204 | 421 | 265 | 4 | 27 | 438 | 7 | 424 | 2.88e-68 | 233 |
| MS.gene27969.t1 | MTR_7g086610 | 33.831 | 402 | 256 | 3 | 44 | 438 | 15 | 413 | 3.64e-68 | 232 |
| MS.gene27969.t1 | MTR_6g027680 | 34.236 | 406 | 254 | 4 | 42 | 438 | 26 | 427 | 5.43e-67 | 228 |
| MS.gene27969.t1 | MTR_7g007850 | 29.371 | 572 | 336 | 10 | 46 | 563 | 29 | 586 | 1.38e-66 | 228 |
| MS.gene27969.t1 | MTR_7g007850 | 35.661 | 401 | 249 | 5 | 46 | 438 | 29 | 428 | 8.76e-66 | 223 |
| MS.gene27969.t1 | MTR_6g027660 | 33.985 | 409 | 251 | 6 | 42 | 438 | 24 | 425 | 1.24e-65 | 226 |
| MS.gene27969.t1 | MTR_7g007850 | 35.661 | 401 | 249 | 5 | 46 | 438 | 29 | 428 | 1.78e-65 | 223 |
| MS.gene27969.t1 | MTR_6g027650 | 34.015 | 391 | 243 | 4 | 60 | 438 | 30 | 417 | 9.10e-65 | 223 |
| MS.gene27969.t1 | MTR_6g034535 | 46.320 | 231 | 112 | 4 | 353 | 582 | 89 | 308 | 2.75e-64 | 214 |
| MS.gene27969.t1 | MTR_6g034535 | 44.792 | 96 | 28 | 1 | 90 | 185 | 19 | 89 | 3.24e-16 | 80.5 |
| MS.gene27969.t1 | MTR_8g089342 | 75.214 | 117 | 29 | 0 | 14 | 130 | 23 | 139 | 6.64e-58 | 191 |
| MS.gene27969.t1 | MTR_6g027630 | 33.138 | 341 | 215 | 3 | 108 | 438 | 2 | 339 | 1.39e-50 | 183 |
| MS.gene27969.t1 | MTR_6g027670 | 31.646 | 158 | 108 | 0 | 281 | 438 | 1 | 158 | 5.46e-22 | 97.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27969.t1 | AT4G21120 | 65.451 | 576 | 198 | 1 | 10 | 584 | 16 | 591 | 0.0 | 778 |
| MS.gene27969.t1 | AT2G34960 | 58.228 | 553 | 228 | 2 | 12 | 562 | 12 | 563 | 0.0 | 665 |
| MS.gene27969.t1 | AT4G21120 | 62.812 | 441 | 163 | 1 | 145 | 584 | 1 | 441 | 0.0 | 572 |
| MS.gene27969.t1 | AT1G17120 | 50.998 | 551 | 268 | 2 | 13 | 562 | 30 | 579 | 0.0 | 558 |
| MS.gene27969.t1 | AT5G04770 | 40.972 | 576 | 309 | 6 | 22 | 574 | 15 | 582 | 8.54e-147 | 436 |
| MS.gene27969.t1 | AT3G10600 | 41.710 | 573 | 300 | 6 | 19 | 565 | 11 | 575 | 1.61e-142 | 425 |
| MS.gene27969.t1 | AT5G04770 | 44.271 | 384 | 204 | 2 | 22 | 395 | 15 | 398 | 1.35e-108 | 332 |
| MS.gene27969.t1 | AT3G10600 | 39.817 | 437 | 229 | 6 | 155 | 565 | 1 | 429 | 7.20e-100 | 310 |
| MS.gene27969.t1 | AT5G04770 | 38.826 | 443 | 240 | 6 | 155 | 574 | 1 | 435 | 5.43e-98 | 305 |
| MS.gene27969.t1 | AT3G03720 | 32.587 | 402 | 264 | 2 | 44 | 438 | 4 | 405 | 1.93e-69 | 235 |
| MS.gene27969.t1 | AT5G36940 | 33.170 | 407 | 261 | 4 | 42 | 438 | 5 | 410 | 2.95e-69 | 235 |
| MS.gene27969.t1 | AT1G58030 | 31.235 | 429 | 278 | 4 | 17 | 438 | 3 | 421 | 1.51e-66 | 228 |
| MS.gene27969.t1 | AT1G05940 | 30.220 | 546 | 327 | 10 | 56 | 565 | 40 | 567 | 2.05e-63 | 218 |
| MS.gene27969.t1 | AT1G05940 | 29.921 | 508 | 308 | 8 | 56 | 533 | 40 | 529 | 3.38e-60 | 209 |
| MS.gene27969.t1 | AT1G05940 | 31.395 | 430 | 282 | 5 | 56 | 473 | 40 | 468 | 1.60e-59 | 206 |
| MS.gene27969.t1 | AT1G05940 | 29.039 | 458 | 273 | 8 | 143 | 565 | 9 | 449 | 1.73e-43 | 161 |
Find 123 sgRNAs with CRISPR-Local
Find 222 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAAAAGTTTAGGTGATTA+TGG | 0.183327 | 4.4:-11897491 | MS.gene27969:CDS |
| GCTATTAATATATTCCTTCT+TGG | 0.203938 | 4.4:-11894735 | MS.gene27969:CDS |
| TGAATGGTTGGGATCTTATT+TGG | 0.215470 | 4.4:-11897352 | MS.gene27969:CDS |
| ATTCTATCTTTCAACCTAAA+TGG | 0.233964 | 4.4:+11897449 | None:intergenic |
| TAATCTCTTTGTCAACATAT+TGG | 0.256532 | 4.4:+11894583 | None:intergenic |
| GAACTAAATGCAACCGAAAA+TGG | 0.258383 | 4.4:+11895311 | None:intergenic |
| CACAATATGAACCCTGATTA+TGG | 0.260743 | 4.4:-11895731 | MS.gene27969:CDS |
| TCAAAGTCTTCTTCATTTGA+TGG | 0.269199 | 4.4:+11897372 | None:intergenic |
| TGCATACTTAAGAGTAGAAT+TGG | 0.276540 | 4.4:-11895891 | MS.gene27969:CDS |
| GTTGCAGAGGGTGGCAAAAT+AGG | 0.283118 | 4.4:+11895784 | None:intergenic |
| TTGATAAAGATTCATATATA+AGG | 0.285317 | 4.4:-11894707 | MS.gene27969:CDS |
| AATCTCTTTGTCAACATATT+GGG | 0.288744 | 4.4:+11894584 | None:intergenic |
| ATACTCCTTGAATATGTTAT+AGG | 0.292518 | 4.4:-11895836 | MS.gene27969:CDS |
| TATGCTTCATTTGCTCCTTT+TGG | 0.292689 | 4.4:-11895545 | MS.gene27969:CDS |
| CATTTATGAAAACACCATTT+AGG | 0.293778 | 4.4:-11897463 | MS.gene27969:CDS |
| GTTGAAGAGAGAAGAGATTC+TGG | 0.301802 | 4.4:+11895646 | None:intergenic |
| AAGCAAAGAAACCTAAAGTT+TGG | 0.310693 | 4.4:-11894797 | MS.gene27969:CDS |
| GAAGATTCATTCAAAAGTTT+AGG | 0.314300 | 4.4:-11897500 | MS.gene27969:CDS |
| AAAGATTCATATATAAGGTT+TGG | 0.336683 | 4.4:-11894702 | MS.gene27969:CDS |
| ATCGGCGCCGTCGTCGGTTC+CGG | 0.340214 | 4.4:-11897323 | MS.gene27969:CDS |
| ATGAGGGCTATAACAGCAAT+AGG | 0.342880 | 4.4:+11895698 | None:intergenic |
| GACATTCCTATTGGTCTTGT+AGG | 0.349217 | 4.4:-11895422 | MS.gene27969:CDS |
| TTTCGGGGTTGGCGTTGATT+AGG | 0.363441 | 4.4:+11895570 | None:intergenic |
| ATTGCCTTCATCATCATTGT+TGG | 0.370746 | 4.4:-11895593 | MS.gene27969:CDS |
| GATCTTATTTGGTTCGGAAT+CGG | 0.376968 | 4.4:-11897341 | MS.gene27969:CDS |
| AGCAAAGAAACCTAAAGTTT+GGG | 0.379219 | 4.4:-11894796 | MS.gene27969:CDS |
| AAGATTCATATATAAGGTTT+GGG | 0.381982 | 4.4:-11894701 | MS.gene27969:CDS |
| GGGTCAAGATGACCATAATC+AGG | 0.382582 | 4.4:+11895719 | None:intergenic |
| ATAAGGTTTGGGATGTGGTC+AGG | 0.401357 | 4.4:-11894690 | MS.gene27969:CDS |
| GTGCGTCGTTATTATTCAAC+TGG | 0.401775 | 4.4:-11894990 | MS.gene27969:CDS |
| TTGCATTTAGTTCTGTTGGA+TGG | 0.409334 | 4.4:-11895301 | MS.gene27969:CDS |
| TGCATTTAGTTCTGTTGGAT+GGG | 0.411581 | 4.4:-11895300 | MS.gene27969:CDS |
| TGTTGCATTGGGAGCATTGA+AGG | 0.418790 | 4.4:-11895261 | MS.gene27969:CDS |
| GCTCTTGTTCATGAGAAAAC+CGG | 0.418847 | 4.4:-11895149 | MS.gene27969:CDS |
| CAAGGGTGGCGATGGCTATG+AGG | 0.419014 | 4.4:+11895681 | None:intergenic |
| GGTTGGGATCTTATTTGGTT+CGG | 0.419604 | 4.4:-11897347 | MS.gene27969:CDS |
| TAAGTGTTGAAATCGACAAT+AGG | 0.420519 | 4.4:+11895045 | None:intergenic |
| GGCTAAATACATTGTTGCAT+TGG | 0.420648 | 4.4:-11895273 | MS.gene27969:CDS |
| GGTTGAAAGCAGACATACTA+TGG | 0.421791 | 4.4:-11894607 | MS.gene27969:CDS |
| TTAGTTCTGTTGGATGGGGA+TGG | 0.422848 | 4.4:-11895295 | MS.gene27969:CDS |
| CTTTGATGCAGTGTCAACTA+TGG | 0.425840 | 4.4:-11895471 | MS.gene27969:CDS |
| GCTAAATACATTGTTGCATT+GGG | 0.433060 | 4.4:-11895272 | MS.gene27969:CDS |
| TGAAGAAGACTTTGAATGGT+TGG | 0.433470 | 4.4:-11897364 | MS.gene27969:CDS |
| ATTGATCCTACAAGACCAAT+AGG | 0.439236 | 4.4:+11895416 | None:intergenic |
| CATATATAAGGTTTGGGATG+TGG | 0.442523 | 4.4:-11894695 | MS.gene27969:CDS |
| CAAATGAAGAAGACTTTGAA+TGG | 0.443211 | 4.4:-11897368 | MS.gene27969:CDS |
| TATTGGTCTTGTAGGATCAA+TGG | 0.444727 | 4.4:-11895414 | MS.gene27969:CDS |
| TCGGTTGCATTTAGTTCTGT+TGG | 0.449501 | 4.4:-11895305 | MS.gene27969:CDS |
| GAAGAAGACTTTGAATGGTT+GGG | 0.451214 | 4.4:-11897363 | MS.gene27969:CDS |
| TAGTTCTGTTGGATGGGGAT+GGG | 0.454120 | 4.4:-11895294 | MS.gene27969:CDS |
| AGTAGAATTGGGAGACTTTG+TGG | 0.458556 | 4.4:-11895879 | MS.gene27969:CDS |
| CTGCTCCTATAACATATTCA+AGG | 0.458801 | 4.4:+11895831 | None:intergenic |
| GTACTCACATGATGCCTCCT+TGG | 0.466399 | 4.4:-11895175 | MS.gene27969:CDS |
| TTTGTGGCCTTCATAGCTGC+TGG | 0.472452 | 4.4:-11895863 | MS.gene27969:CDS |
| CTCTTGTTCATGAGAAAACC+GGG | 0.472524 | 4.4:-11895148 | MS.gene27969:CDS |
| AAATGGTGCATTGACATCAA+TGG | 0.475079 | 4.4:+11895328 | None:intergenic |
| CCTGGCAGAGACATTCCTAT+TGG | 0.477268 | 4.4:-11895431 | MS.gene27969:CDS |
| GCATACTTAAGAGTAGAATT+GGG | 0.485267 | 4.4:-11895890 | MS.gene27969:CDS |
| TATGTTTCCAGCAGCTATGA+AGG | 0.486802 | 4.4:+11895856 | None:intergenic |
| TTCGGAATCGGCGCCGTCGT+CGG | 0.489934 | 4.4:-11897329 | MS.gene27969:CDS |
| TGAGTGATGGTTGGATTGGA+TGG | 0.492403 | 4.4:-11894878 | MS.gene27969:CDS |
| CCAATAGGAATGTCTCTGCC+AGG | 0.497538 | 4.4:+11895431 | None:intergenic |
| CAGCAGCCGTAGCTCGATCA+TGG | 0.497728 | 4.4:-11895811 | MS.gene27969:CDS |
| ACTTTAGGTTTCTTTGCTTG+TGG | 0.499703 | 4.4:+11894801 | None:intergenic |
| CTTGAAGCTCGTGAGGAGGC+TGG | 0.502388 | 4.4:-11897281 | MS.gene27969:CDS |
| TAAGGTTTGGGATGTGGTCA+GGG | 0.502438 | 4.4:-11894689 | MS.gene27969:CDS |
| ACTATTATACGAAAATCGTT+AGG | 0.506095 | 4.4:+11895755 | None:intergenic |
| CATAATCAGGGTTCATATTG+TGG | 0.510899 | 4.4:+11895732 | None:intergenic |
| AAATTATATGACACAGGAGA+TGG | 0.511787 | 4.4:-11897561 | None:intergenic |
| GAAGGTAACCAAGGAACTAA+AGG | 0.517947 | 4.4:+11894768 | None:intergenic |
| GCATTTAGTTCTGTTGGATG+GGG | 0.520674 | 4.4:-11895299 | MS.gene27969:CDS |
| AAAAGATTACATGGAGATTG+TGG | 0.522533 | 4.4:-11897414 | MS.gene27969:CDS |
| AAAACACCTCTGGTACCAAA+AGG | 0.527195 | 4.4:+11895530 | None:intergenic |
| TGTAGCATTCAAAGGTGTCC+CGG | 0.529346 | 4.4:+11895130 | None:intergenic |
| TACACGATCAAAAGATTACA+TGG | 0.530851 | 4.4:-11897423 | MS.gene27969:CDS |
| ATAGAGCAATGAGTGATGGT+TGG | 0.531056 | 4.4:-11894887 | MS.gene27969:CDS |
| TTCTGGTGCTTAAGACTGCA+AGG | 0.531934 | 4.4:+11895663 | None:intergenic |
| AACAAGAAGGCAAATACCTC+CGG | 0.540070 | 4.4:+11894824 | None:intergenic |
| AGAGATTAACAATGTTGAAG+AGG | 0.543356 | 4.4:-11894568 | MS.gene27969:CDS |
| TTTGAATGCTACAATTGCAA+TGG | 0.543834 | 4.4:-11895120 | MS.gene27969:CDS |
| GCAATGAGTGATGGTTGGAT+TGG | 0.544767 | 4.4:-11894882 | MS.gene27969:CDS |
| GAAAATGCCGGAACCGACGA+CGG | 0.546498 | 4.4:+11897316 | None:intergenic |
| GCTGTGGAAATTCCTGTCGC+AGG | 0.549047 | 4.4:-11897185 | MS.gene27969:intron |
| TAAGACTGCAAGGGTGGCGA+TGG | 0.550212 | 4.4:+11895673 | None:intergenic |
| TTGATTATTGGATCTTCATG+TGG | 0.550908 | 4.4:-11894921 | MS.gene27969:CDS |
| GACAACATTAACCAACAAAA+CGG | 0.553927 | 4.4:+11895229 | None:intergenic |
| ATTGCAATTGTAGCATTCAA+AGG | 0.554677 | 4.4:+11895122 | None:intergenic |
| CAGTGTAATAAACCTGCGAC+AGG | 0.557065 | 4.4:+11897173 | None:intergenic |
| GCATACGACAAAACAACGGC+AGG | 0.559328 | 4.4:+11897257 | None:intergenic |
| CACGGGTCTTGAAGCTCGTG+AGG | 0.559748 | 4.4:-11897288 | MS.gene27969:CDS |
| GTTTATAGAGCAATGAGTGA+TGG | 0.561915 | 4.4:-11894891 | MS.gene27969:CDS |
| TGCTTCTTATGATGCATCAA+AGG | 0.567964 | 4.4:-11894631 | MS.gene27969:CDS |
| TGCAGTGTCAACTATGGCCG+AGG | 0.568528 | 4.4:-11895465 | MS.gene27969:CDS |
| GTTGCATTGGGAGCATTGAA+GGG | 0.572087 | 4.4:-11895260 | MS.gene27969:CDS |
| AAGGGTGGCGATGGCTATGA+GGG | 0.572955 | 4.4:+11895682 | None:intergenic |
| CTTTATCAATAGATCCAAGA+AGG | 0.573540 | 4.4:+11894721 | None:intergenic |
| TAGGCCAACAATGATGATGA+AGG | 0.578906 | 4.4:+11895589 | None:intergenic |
| TGAGGGCTATAACAGCAATA+GGG | 0.590082 | 4.4:+11895699 | None:intergenic |
| CAAATTAAATTATATGACAC+AGG | 0.591539 | 4.4:-11897567 | None:intergenic |
| TCTTTGCTTGTGGAACAAGA+AGG | 0.591771 | 4.4:+11894811 | None:intergenic |
| GCAGAGGGTGGCAAAATAGG+AGG | 0.598124 | 4.4:+11895787 | None:intergenic |
| AATTATATGACACAGGAGAT+GGG | 0.599472 | 4.4:-11897560 | None:intergenic |
| GCAAAGAAACCTAAAGTTTG+GGG | 0.603737 | 4.4:-11894795 | MS.gene27969:CDS |
| GGAGGTCCATGATCGAGCTA+CGG | 0.611878 | 4.4:+11895805 | None:intergenic |
| GGTCAAGATGACCATAATCA+GGG | 0.614215 | 4.4:+11895720 | None:intergenic |
| GGGTCTTGAAGCTCGTGAGG+AGG | 0.615839 | 4.4:-11897285 | MS.gene27969:CDS |
| ACCCGTGAGAACGAAAATGC+CGG | 0.617637 | 4.4:+11897304 | None:intergenic |
| CTGTTACACTGAGTTCGCTG+TGG | 0.620747 | 4.4:-11897201 | MS.gene27969:CDS |
| AATGGTTACAGCAACTTCCG+TGG | 0.620972 | 4.4:-11895102 | MS.gene27969:CDS |
| CAATAGGAATGTCTCTGCCA+GGG | 0.621672 | 4.4:+11895432 | None:intergenic |
| TTCTTATGATGCATCAAAGG+AGG | 0.629051 | 4.4:-11894628 | MS.gene27969:CDS |
| AGCAAAGAAAAGAACAGCTG+AGG | 0.637960 | 4.4:+11895502 | None:intergenic |
| GAGTGATGGTTGGATTGGAT+GGG | 0.641500 | 4.4:-11894877 | MS.gene27969:CDS |
| GGTGCTTAAGACTGCAAGGG+TGG | 0.641563 | 4.4:+11895667 | None:intergenic |
| TCTGGTGCTTAAGACTGCAA+GGG | 0.651168 | 4.4:+11895664 | None:intergenic |
| CAAAGAAACCTAAAGTTTGG+GGG | 0.656196 | 4.4:-11894794 | MS.gene27969:CDS |
| GACAGCATACGACAAAACAA+CGG | 0.658241 | 4.4:+11897253 | None:intergenic |
| CCGGTTCCTAAAAGCCACAA+TGG | 0.662648 | 4.4:+11894843 | None:intergenic |
| AAAGAAACCTAAAGTTTGGG+GGG | 0.664460 | 4.4:-11894793 | MS.gene27969:CDS |
| AATGTGAGTTAAATAACGTG+AGG | 0.693226 | 4.4:+11895202 | None:intergenic |
| TCATGAACAAGAGCAAACCA+AGG | 0.716329 | 4.4:+11895158 | None:intergenic |
| TGAACAAGAGCAAACCAAGG+AGG | 0.732183 | 4.4:+11895161 | None:intergenic |
| GAGATGGGTACAGAAAACAG+TGG | 0.787629 | 4.4:-11897545 | MS.gene27969:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAATTTCCTAAATAAA+AGG | + | chr4.4:11895025-11895044 | None:intergenic | 10.0% |
| !!! | ATTTTGTGATTTATTTTTTA+AGG | - | chr4.4:11895041-11895060 | MS.gene27969:CDS | 10.0% |
| !!! | TAAGTAATTAATCATTTTTT+TGG | + | chr4.4:11895420-11895439 | None:intergenic | 10.0% |
| !!! | TAATTTTTTTTATAGTGTTA+TGG | - | chr4.4:11895987-11896006 | MS.gene27969:intron | 10.0% |
| !! | ATTAATTACTTATGAATTGA+AGG | - | chr4.4:11895428-11895447 | MS.gene27969:CDS | 15.0% |
| !! | TACAAAATGTATAGAAAAAT+AGG | + | chr4.4:11895915-11895934 | None:intergenic | 15.0% |
| !! | TTGATAAAGATTCATATATA+AGG | - | chr4.4:11897401-11897420 | MS.gene27969:CDS | 15.0% |
| !! | TTTAATTAATGTTATTCGTA+CGG | + | chr4.4:11895670-11895689 | None:intergenic | 15.0% |
| !!! | GAATATTATACCTTTTATTT+AGG | - | chr4.4:11895012-11895031 | MS.gene27969:CDS | 15.0% |
| !! | AAAGATTCATATATAAGGTT+TGG | - | chr4.4:11897406-11897425 | MS.gene27969:CDS | 20.0% |
| !! | AAGATTCATATATAAGGTTT+GGG | - | chr4.4:11897407-11897426 | MS.gene27969:CDS | 20.0% |
| !! | ATCAACTATTATGTAGAAAA+TGG | + | chr4.4:11896115-11896134 | None:intergenic | 20.0% |
| !! | TCAACTATTATGTAGAAAAT+GGG | + | chr4.4:11896114-11896133 | None:intergenic | 20.0% |
| !! | TGTATAAAATATGCAAAGTT+CGG | - | chr4.4:11895374-11895393 | MS.gene27969:CDS | 20.0% |
| !! | TGTATTTCTTAAAGTTAGAA+GGG | - | chr4.4:11895931-11895950 | MS.gene27969:intron | 20.0% |
| !! | TTAATAGCAATAGAAAAAGA+AGG | + | chr4.4:11897361-11897380 | None:intergenic | 20.0% |
| !! | TTGTATTTCTTAAAGTTAGA+AGG | - | chr4.4:11895930-11895949 | MS.gene27969:intron | 20.0% |
| !! | TTTCTACATAATAGTTGATT+TGG | - | chr4.4:11896116-11896135 | MS.gene27969:intron | 20.0% |
| !!! | ATTAATCATTTTTTTGGTAG+TGG | + | chr4.4:11895414-11895433 | None:intergenic | 20.0% |
| !!! | ATTTAACTTTTAAGGTAAGA+GGG | + | chr4.4:11896064-11896083 | None:intergenic | 20.0% |
| !!! | TATTTTTTCTTGATATAGTC+AGG | + | chr4.4:11895568-11895587 | None:intergenic | 20.0% |
| !!! | TGATTTACTATTTTCTCATT+GGG | - | chr4.4:11897449-11897468 | MS.gene27969:CDS | 20.0% |
| !!! | TGTTTTAGAGTATGTTTTTA+AGG | + | chr4.4:11895734-11895753 | None:intergenic | 20.0% |
| !!! | TTAAAAGTATGTTTGAATAG+AGG | - | chr4.4:11895149-11895168 | MS.gene27969:CDS | 20.0% |
| !!! | TTGATTTACTATTTTCTCAT+TGG | - | chr4.4:11897448-11897467 | MS.gene27969:CDS | 20.0% |
| !!! | TTTTTATAGTGTTATGGTTA+TGG | - | chr4.4:11895993-11896012 | MS.gene27969:intron | 20.0% |
| ! | AAGTATAAACATGACTTTGT+TGG | + | chr4.4:11895592-11895611 | None:intergenic | 25.0% |
| ! | AATCTCTTTGTCAACATATT+GGG | + | chr4.4:11897527-11897546 | None:intergenic | 25.0% |
| ! | ACTATTATACGAAAATCGTT+AGG | + | chr4.4:11896356-11896375 | None:intergenic | 25.0% |
| ! | ATACTCCTTGAATATGTTAT+AGG | - | chr4.4:11896272-11896291 | MS.gene27969:intron | 25.0% |
| ! | ATTCTATCTTTCAACCTAAA+TGG | + | chr4.4:11894662-11894681 | None:intergenic | 25.0% |
| ! | CATTTATGAAAACACCATTT+AGG | - | chr4.4:11894645-11894664 | MS.gene27969:CDS | 25.0% |
| ! | GAAGATTCATTCAAAAGTTT+AGG | - | chr4.4:11894608-11894627 | MS.gene27969:CDS | 25.0% |
| ! | GCTATTAATATATTCCTTCT+TGG | - | chr4.4:11897373-11897392 | MS.gene27969:CDS | 25.0% |
| ! | GTATAAAATATGCAAAGTTC+GGG | - | chr4.4:11895375-11895394 | MS.gene27969:CDS | 25.0% |
| ! | GTCATGTTTATACTTAAAGT+TGG | - | chr4.4:11895597-11895616 | MS.gene27969:CDS | 25.0% |
| ! | TAATCTCTTTGTCAACATAT+TGG | + | chr4.4:11897528-11897547 | None:intergenic | 25.0% |
| ! | TATAAAATATGCAAAGTTCG+GGG | - | chr4.4:11895376-11895395 | MS.gene27969:CDS | 25.0% |
| ! | TTCAAAAGTTTAGGTGATTA+TGG | - | chr4.4:11894617-11894636 | MS.gene27969:CDS | 25.0% |
| !! | AAACTTTTGAATGAATCTTC+TGG | + | chr4.4:11894608-11894627 | None:intergenic | 25.0% |
| !! | AACTTTTGAATGAATCTTCT+GGG | + | chr4.4:11894607-11894626 | None:intergenic | 25.0% |
| !! | TTTGAATAGAGGATTTTGAA+GGG | - | chr4.4:11895160-11895179 | MS.gene27969:CDS | 25.0% |
| !! | TTTTGTAAACACAACAATCA+TGG | - | chr4.4:11895483-11895502 | MS.gene27969:CDS | 25.0% |
| !!! | GATTTAACTTTTAAGGTAAG+AGG | + | chr4.4:11896065-11896084 | None:intergenic | 25.0% |
| !!! | GTATGTGTTGTTTTGATTAT+TGG | - | chr4.4:11897175-11897194 | MS.gene27969:intron | 25.0% |
| !!! | TATGTTTTTAAGGTGAGTTT+TGG | + | chr4.4:11895724-11895743 | None:intergenic | 25.0% |
| !!! | TGCATTGGATTTAACTTTTA+AGG | + | chr4.4:11896072-11896091 | None:intergenic | 25.0% |
| AAAAGATTACATGGAGATTG+TGG | - | chr4.4:11894694-11894713 | MS.gene27969:CDS | 30.0% | |
| AAGCAAAGAAACCTAAAGTT+TGG | - | chr4.4:11897311-11897330 | MS.gene27969:CDS | 30.0% | |
| AATGTGAGTTAAATAACGTG+AGG | + | chr4.4:11896909-11896928 | None:intergenic | 30.0% | |
| ACTTATGAATTGAAGGTAAG+CGG | - | chr4.4:11895435-11895454 | MS.gene27969:CDS | 30.0% | |
| AGAGATTAACAATGTTGAAG+AGG | - | chr4.4:11897540-11897559 | MS.gene27969:CDS | 30.0% | |
| AGCAAAGAAACCTAAAGTTT+GGG | - | chr4.4:11897312-11897331 | MS.gene27969:CDS | 30.0% | |
| ATACAGTATATAGGTAGCAA+AGG | - | chr4.4:11895954-11895973 | MS.gene27969:intron | 30.0% | |
| ATAGAAAAAGAAGGTAACCA+AGG | + | chr4.4:11897352-11897371 | None:intergenic | 30.0% | |
| ATGATATGCAATCACAAGTA+AGG | + | chr4.4:11895874-11895893 | None:intergenic | 30.0% | |
| ATTGCAATTGTAGCATTCAA+AGG | + | chr4.4:11896989-11897008 | None:intergenic | 30.0% | |
| CAAATGAAGAAGACTTTGAA+TGG | - | chr4.4:11894740-11894759 | MS.gene27969:CDS | 30.0% | |
| CTTTATCAATAGATCCAAGA+AGG | + | chr4.4:11897390-11897409 | None:intergenic | 30.0% | |
| GACAACATTAACCAACAAAA+CGG | + | chr4.4:11896882-11896901 | None:intergenic | 30.0% | |
| GATGCATATAGTTCATTCTA+AGG | + | chr4.4:11895628-11895647 | None:intergenic | 30.0% | |
| GCATACTTAAGAGTAGAATT+GGG | - | chr4.4:11896218-11896237 | MS.gene27969:intron | 30.0% | |
| GCTAAATACATTGTTGCATT+GGG | - | chr4.4:11896836-11896855 | MS.gene27969:intron | 30.0% | |
| GTGTTTACAAAAAGACTTAG+CGG | + | chr4.4:11895475-11895494 | None:intergenic | 30.0% | |
| TACACGATCAAAAGATTACA+TGG | - | chr4.4:11894685-11894704 | MS.gene27969:CDS | 30.0% | |
| TCAAAGTCTTCTTCATTTGA+TGG | + | chr4.4:11894739-11894758 | None:intergenic | 30.0% | |
| TCTTGTGATTAAGTATGCAT+TGG | + | chr4.4:11896087-11896106 | None:intergenic | 30.0% | |
| TGAGACTAATTGAGTTATGT+GGG | - | chr4.4:11896165-11896184 | MS.gene27969:intron | 30.0% | |
| TGCATACTTAAGAGTAGAAT+TGG | - | chr4.4:11896217-11896236 | MS.gene27969:intron | 30.0% | |
| TTAGAAGGGATACAGTATAT+AGG | - | chr4.4:11895945-11895964 | MS.gene27969:intron | 30.0% | |
| TTGAGACTAATTGAGTTATG+TGG | - | chr4.4:11896164-11896183 | MS.gene27969:intron | 30.0% | |
| TTGATTATTGGATCTTCATG+TGG | - | chr4.4:11897187-11897206 | MS.gene27969:CDS | 30.0% | |
| TTTGAATGCTACAATTGCAA+TGG | - | chr4.4:11896988-11897007 | MS.gene27969:intron | 30.0% | |
| ! | AGCAAATGAAGCATAGTTTT+CGG | + | chr4.4:11896558-11896577 | None:intergenic | 30.0% |
| ! | GTTCTTTTCTTTGCTTACAT+AGG | - | chr4.4:11896614-11896633 | MS.gene27969:intron | 30.0% |
| ! | GTTTGAATAGAGGATTTTGA+AGG | - | chr4.4:11895159-11895178 | MS.gene27969:CDS | 30.0% |
| ! | TTTTTCTTGATATAGTCAGG+CGG | + | chr4.4:11895565-11895584 | None:intergenic | 30.0% |
| !! | GTTATTGTTTGTTATCAGGT+GGG | - | chr4.4:11896189-11896208 | MS.gene27969:intron | 30.0% |
| !! | GTTTTGTTGGTTAATGTTGT+CGG | - | chr4.4:11896881-11896900 | MS.gene27969:intron | 30.0% |
| !! | TAAGTGTTGAAATCGACAAT+AGG | + | chr4.4:11897066-11897085 | None:intergenic | 30.0% |
| !! | TGTTATTGTTTGTTATCAGG+TGG | - | chr4.4:11896188-11896207 | MS.gene27969:intron | 30.0% |
| !!! | TTTTTAAGGTGAGTTTTGGA+GGG | + | chr4.4:11895720-11895739 | None:intergenic | 30.0% |
| AAAGAAACCTAAAGTTTGGG+GGG | - | chr4.4:11897315-11897334 | MS.gene27969:CDS | 35.0% | |
| ATCAGTGAAAAATGCAACCA+CGG | + | chr4.4:11897026-11897045 | None:intergenic | 35.0% | |
| ATTGATCCTACAAGACCAAT+AGG | + | chr4.4:11896695-11896714 | None:intergenic | 35.0% | |
| ATTGCCTTCATCATCATTGT+TGG | - | chr4.4:11896515-11896534 | MS.gene27969:intron | 35.0% | |
| CAAAGAAACCTAAAGTTTGG+GGG | - | chr4.4:11897314-11897333 | MS.gene27969:CDS | 35.0% | |
| CACAATATGAACCCTGATTA+TGG | - | chr4.4:11896377-11896396 | MS.gene27969:intron | 35.0% | |
| CATAATCAGGGTTCATATTG+TGG | + | chr4.4:11896379-11896398 | None:intergenic | 35.0% | |
| CGGTATCTCTGGATATATTT+AGG | + | chr4.4:11895650-11895669 | None:intergenic | 35.0% | |
| CTGCTCCTATAACATATTCA+AGG | + | chr4.4:11896280-11896299 | None:intergenic | 35.0% | |
| CTTATGAATTGAAGGTAAGC+GGG | - | chr4.4:11895436-11895455 | MS.gene27969:CDS | 35.0% | |
| GAACTAAATGCAACCGAAAA+TGG | + | chr4.4:11896800-11896819 | None:intergenic | 35.0% | |
| GAAGAAGACTTTGAATGGTT+GGG | - | chr4.4:11894745-11894764 | MS.gene27969:CDS | 35.0% | |
| GCAAAGAAACCTAAAGTTTG+GGG | - | chr4.4:11897313-11897332 | MS.gene27969:CDS | 35.0% | |
| GGCTAAATACATTGTTGCAT+TGG | - | chr4.4:11896835-11896854 | MS.gene27969:intron | 35.0% | |
| GTTTATAGAGCAATGAGTGA+TGG | - | chr4.4:11897217-11897236 | MS.gene27969:CDS | 35.0% | |
| TGAAGAAGACTTTGAATGGT+TGG | - | chr4.4:11894744-11894763 | MS.gene27969:CDS | 35.0% | |
| TGAATGGTTGGGATCTTATT+TGG | - | chr4.4:11894756-11894775 | MS.gene27969:CDS | 35.0% | |
| TGCTTCTTATGATGCATCAA+AGG | - | chr4.4:11897477-11897496 | MS.gene27969:CDS | 35.0% | |
| TTATGAATTGAAGGTAAGCG+GGG | - | chr4.4:11895437-11895456 | MS.gene27969:CDS | 35.0% | |
| TTCTTATGATGCATCAAAGG+AGG | - | chr4.4:11897480-11897499 | MS.gene27969:CDS | 35.0% | |
| ! | AAATGGTGCATTGACATCAA+TGG | + | chr4.4:11896783-11896802 | None:intergenic | 35.0% |
| ! | ACTTTAGGTTTCTTTGCTTG+TGG | + | chr4.4:11897310-11897329 | None:intergenic | 35.0% |
| ! | ATTTTCGTGCTTGTAGCAAT+TGG | - | chr4.4:11897088-11897107 | MS.gene27969:intron | 35.0% |
| ! | CAAATGAAGCATAGTTTTCG+GGG | + | chr4.4:11896556-11896575 | None:intergenic | 35.0% |
| ! | CATATATAAGGTTTGGGATG+TGG | - | chr4.4:11897413-11897432 | MS.gene27969:CDS | 35.0% |
| ! | GCAAATGAAGCATAGTTTTC+GGG | + | chr4.4:11896557-11896576 | None:intergenic | 35.0% |
| ! | GTTAGGATTTTTGTTGCAGA+GGG | + | chr4.4:11896339-11896358 | None:intergenic | 35.0% |
| ! | TATGCTTCATTTGCTCCTTT+TGG | - | chr4.4:11896563-11896582 | MS.gene27969:intron | 35.0% |
| ! | TGATGTCAATGCACCATTTT+CGG | - | chr4.4:11896784-11896803 | MS.gene27969:intron | 35.0% |
| ! | TTTTCGTGCTTGTAGCAATT+GGG | - | chr4.4:11897089-11897108 | MS.gene27969:intron | 35.0% |
| !! | GATCTTATTTGGTTCGGAAT+CGG | - | chr4.4:11894767-11894786 | MS.gene27969:CDS | 35.0% |
| !! | GGGTGTTATTGTTTGTTATC+AGG | - | chr4.4:11896185-11896204 | MS.gene27969:intron | 35.0% |
| !! | TATTGGTCTTGTAGGATCAA+TGG | - | chr4.4:11896694-11896713 | MS.gene27969:intron | 35.0% |
| !! | TGCATTTAGTTCTGTTGGAT+GGG | - | chr4.4:11896808-11896827 | MS.gene27969:intron | 35.0% |
| !! | TTGCATTTAGTTCTGTTGGA+TGG | - | chr4.4:11896807-11896826 | MS.gene27969:intron | 35.0% |
| !!! | ATCATTTTTTTGGTAGTGGC+CGG | + | chr4.4:11895410-11895429 | None:intergenic | 35.0% |
| !!! | GTTTTTAAGGTGAGTTTTGG+AGG | + | chr4.4:11895721-11895740 | None:intergenic | 35.0% |
| !!! | TGGTTTTGTAGTTCTGCATA+AGG | + | chr4.4:11896763-11896782 | None:intergenic | 35.0% |
| AAAACACCTCTGGTACCAAA+AGG | + | chr4.4:11896581-11896600 | None:intergenic | 40.0% | |
| AACAAGAAGGCAAATACCTC+CGG | + | chr4.4:11897287-11897306 | None:intergenic | 40.0% | |
| AGCAAAGAAAAGAACAGCTG+AGG | + | chr4.4:11896609-11896628 | None:intergenic | 40.0% | |
| AGTAGAATTGGGAGACTTTG+TGG | - | chr4.4:11896229-11896248 | MS.gene27969:intron | 40.0% | |
| ATAGAGCAATGAGTGATGGT+TGG | - | chr4.4:11897221-11897240 | MS.gene27969:CDS | 40.0% | |
| ATGAGGGCTATAACAGCAAT+AGG | + | chr4.4:11896413-11896432 | None:intergenic | 40.0% | |
| CTCTTGTTCATGAGAAAACC+GGG | - | chr4.4:11896960-11896979 | MS.gene27969:intron | 40.0% | |
| CTTTGATGCAGTGTCAACTA+TGG | - | chr4.4:11896637-11896656 | MS.gene27969:intron | 40.0% | |
| GAAGGTAACCAAGGAACTAA+AGG | + | chr4.4:11897343-11897362 | None:intergenic | 40.0% | |
| GACAGCATACGACAAAACAA+CGG | + | chr4.4:11894858-11894877 | None:intergenic | 40.0% | |
| GCTCTTGTTCATGAGAAAAC+CGG | - | chr4.4:11896959-11896978 | MS.gene27969:intron | 40.0% | |
| GGTCAAGATGACCATAATCA+GGG | + | chr4.4:11896391-11896410 | None:intergenic | 40.0% | |
| GGTTGAAAGCAGACATACTA+TGG | - | chr4.4:11897501-11897520 | MS.gene27969:CDS | 40.0% | |
| GTGCGTCGTTATTATTCAAC+TGG | - | chr4.4:11897118-11897137 | MS.gene27969:intron | 40.0% | |
| GTTGAAGAGAGAAGAGATTC+TGG | + | chr4.4:11896465-11896484 | None:intergenic | 40.0% | |
| TATGTTTCCAGCAGCTATGA+AGG | + | chr4.4:11896255-11896274 | None:intergenic | 40.0% | |
| TCATGAACAAGAGCAAACCA+AGG | + | chr4.4:11896953-11896972 | None:intergenic | 40.0% | |
| TCTTTGCTTGTGGAACAAGA+AGG | + | chr4.4:11897300-11897319 | None:intergenic | 40.0% | |
| TGAGGGCTATAACAGCAATA+GGG | + | chr4.4:11896412-11896431 | None:intergenic | 40.0% | |
| TGTTATTCGTACGGTATCTC+TGG | + | chr4.4:11895661-11895680 | None:intergenic | 40.0% | |
| ! | CGTTAGGATTTTTGTTGCAG+AGG | + | chr4.4:11896340-11896359 | None:intergenic | 40.0% |
| ! | GGTTGGGATCTTATTTGGTT+CGG | - | chr4.4:11894761-11894780 | MS.gene27969:CDS | 40.0% |
| ! | TAGGCCAACAATGATGATGA+AGG | + | chr4.4:11896522-11896541 | None:intergenic | 40.0% |
| !! | GAATAGAGGATTTTGAAGGG+TGG | - | chr4.4:11895163-11895182 | MS.gene27969:CDS | 40.0% |
| !! | GACATTCCTATTGGTCTTGT+AGG | - | chr4.4:11896686-11896705 | MS.gene27969:intron | 40.0% |
| !! | GCATTTAGTTCTGTTGGATG+GGG | - | chr4.4:11896809-11896828 | MS.gene27969:intron | 40.0% |
| !! | TCGGTTGCATTTAGTTCTGT+TGG | - | chr4.4:11896803-11896822 | MS.gene27969:intron | 40.0% |
| !! | TGAGGCTTTAAAAACACCTC+TGG | + | chr4.4:11896591-11896610 | None:intergenic | 40.0% |
| !!! | TCATTTTTTTGGTAGTGGCC+GGG | + | chr4.4:11895409-11895428 | None:intergenic | 40.0% |
| AAAACCAAGACCGCCAGAAA+GGG | + | chr4.4:11895541-11895560 | None:intergenic | 45.0% | |
| AATGGTTACAGCAACTTCCG+TGG | - | chr4.4:11897006-11897025 | MS.gene27969:intron | 45.0% | |
| CAATAGGAATGTCTCTGCCA+GGG | + | chr4.4:11896679-11896698 | None:intergenic | 45.0% | |
| CAGTGTAATAAACCTGCGAC+AGG | + | chr4.4:11894938-11894957 | None:intergenic | 45.0% | |
| GAGATGGGTACAGAAAACAG+TGG | - | chr4.4:11894563-11894582 | MS.gene27969:CDS | 45.0% | |
| GCAATGAGTGATGGTTGGAT+TGG | - | chr4.4:11897226-11897245 | MS.gene27969:CDS | 45.0% | |
| GGGTCAAGATGACCATAATC+AGG | + | chr4.4:11896392-11896411 | None:intergenic | 45.0% | |
| TCTGGTGCTTAAGACTGCAA+GGG | + | chr4.4:11896447-11896466 | None:intergenic | 45.0% | |
| TGAACAAGAGCAAACCAAGG+AGG | + | chr4.4:11896950-11896969 | None:intergenic | 45.0% | |
| TGAGCTTAGCTCAGTTGGTT+GGG | - | chr4.4:11895347-11895366 | MS.gene27969:CDS | 45.0% | |
| TTCTGGTGCTTAAGACTGCA+AGG | + | chr4.4:11896448-11896467 | None:intergenic | 45.0% | |
| ! | AGGATTTTTGTTGCAGAGGG+TGG | + | chr4.4:11896336-11896355 | None:intergenic | 45.0% |
| ! | ATAAGGTTTGGGATGTGGTC+AGG | - | chr4.4:11897418-11897437 | MS.gene27969:CDS | 45.0% |
| ! | GAGTGATGGTTGGATTGGAT+GGG | - | chr4.4:11897231-11897250 | MS.gene27969:CDS | 45.0% |
| ! | GTTTTGTCGTATGCTGTCTC+TGG | - | chr4.4:11894860-11894879 | MS.gene27969:CDS | 45.0% |
| ! | TAAGGTTTGGGATGTGGTCA+GGG | - | chr4.4:11897419-11897438 | MS.gene27969:CDS | 45.0% |
| ! | TAGTTCTGTTGGATGGGGAT+GGG | - | chr4.4:11896814-11896833 | MS.gene27969:intron | 45.0% |
| ! | TGAGTGATGGTTGGATTGGA+TGG | - | chr4.4:11897230-11897249 | MS.gene27969:CDS | 45.0% |
| ! | TTCCGGCATTTTCGTTCTCA+CGG | - | chr4.4:11894802-11894821 | MS.gene27969:CDS | 45.0% |
| ! | TTTGCTCCTTTTGGTACCAG+AGG | - | chr4.4:11896572-11896591 | MS.gene27969:intron | 45.0% |
| !! | AAAGGTACCCCCCAAACTTT+AGG | + | chr4.4:11897325-11897344 | None:intergenic | 45.0% |
| !! | CCATTGTGGCTTTTAGGAAC+CGG | - | chr4.4:11897265-11897284 | MS.gene27969:CDS | 45.0% |
| !! | GTTGCATTGGGAGCATTGAA+GGG | - | chr4.4:11896848-11896867 | MS.gene27969:intron | 45.0% |
| !! | TGAAGCATAGTTTTCGGGGT+TGG | + | chr4.4:11896552-11896571 | None:intergenic | 45.0% |
| !! | TGTAGCATTCAAAGGTGTCC+CGG | + | chr4.4:11896981-11897000 | None:intergenic | 45.0% |
| !! | TGTTGCATTGGGAGCATTGA+AGG | - | chr4.4:11896847-11896866 | MS.gene27969:intron | 45.0% |
| !! | TTAGTTCTGTTGGATGGGGA+TGG | - | chr4.4:11896813-11896832 | MS.gene27969:intron | 45.0% |
| !!! | CATTTTTTTGGTAGTGGCCG+GGG | + | chr4.4:11895408-11895427 | None:intergenic | 45.0% |
| !!! | GCCAGGGTTTTTAGTTTCCT+CGG | + | chr4.4:11896663-11896682 | None:intergenic | 45.0% |
| !!! | TATAAAATAATTTACATTTT+TGG | - | chr4.4:11895828-11895847 | MS.gene27969:CDS | 5.0% |
| AAACCAAGACCGCCAGAAAG+GGG | + | chr4.4:11895540-11895559 | None:intergenic | 50.0% | |
| AAAGTTCGGGGTTCAAACCC+CGG | - | chr4.4:11895388-11895407 | MS.gene27969:CDS | 50.0% | |
| ACCCGTGAGAACGAAAATGC+CGG | + | chr4.4:11894807-11894826 | None:intergenic | 50.0% | |
| CAAAACCAAGACCGCCAGAA+AGG | + | chr4.4:11895542-11895561 | None:intergenic | 50.0% | |
| CCAATAGGAATGTCTCTGCC+AGG | + | chr4.4:11896680-11896699 | None:intergenic | 50.0% | |
| CCGGTTCCTAAAAGCCACAA+TGG | + | chr4.4:11897268-11897287 | None:intergenic | 50.0% | |
| CCTGGCAGAGACATTCCTAT+TGG | - | chr4.4:11896677-11896696 | MS.gene27969:intron | 50.0% | |
| CTGTTACACTGAGTTCGCTG+TGG | - | chr4.4:11894907-11894926 | MS.gene27969:CDS | 50.0% | |
| GCATACGACAAAACAACGGC+AGG | + | chr4.4:11894854-11894873 | None:intergenic | 50.0% | |
| GCCGAGGAAACTAAAAACCC+TGG | - | chr4.4:11896659-11896678 | MS.gene27969:intron | 50.0% | |
| GTACTCACATGATGCCTCCT+TGG | - | chr4.4:11896933-11896952 | MS.gene27969:intron | 50.0% | |
| GTGAGCTTAGCTCAGTTGGT+TGG | - | chr4.4:11895346-11895365 | MS.gene27969:CDS | 50.0% | |
| GTTGCAGAGGGTGGCAAAAT+AGG | + | chr4.4:11896327-11896346 | None:intergenic | 50.0% | |
| TTTGTGGCCTTCATAGCTGC+TGG | - | chr4.4:11896245-11896264 | MS.gene27969:intron | 50.0% | |
| ! | GGGAATGACGACCGTTTTGT+TGG | - | chr4.4:11896868-11896887 | MS.gene27969:intron | 50.0% |
| ! | TCAGCGCCATTGTGGCTTTT+AGG | - | chr4.4:11897259-11897278 | MS.gene27969:CDS | 50.0% |
| ! | TCCGGCATTTTCGTTCTCAC+GGG | - | chr4.4:11894803-11894822 | MS.gene27969:CDS | 50.0% |
| !! | TTGTGGCTTTTAGGAACCGG+AGG | - | chr4.4:11897268-11897287 | MS.gene27969:CDS | 50.0% |
| !! | TTTCGGGGTTGGCGTTGATT+AGG | + | chr4.4:11896541-11896560 | None:intergenic | 50.0% |
| AAGGGTGGCGATGGCTATGA+GGG | + | chr4.4:11896429-11896448 | None:intergenic | 55.0% | |
| CACTTGTCTCCCCTTTCTGG+CGG | - | chr4.4:11895528-11895547 | MS.gene27969:CDS | 55.0% | |
| CCAACTGAGCTAAGCTCACG+AGG | + | chr4.4:11895345-11895364 | None:intergenic | 55.0% | |
| CCTCGTGAGCTTAGCTCAGT+TGG | - | chr4.4:11895342-11895361 | MS.gene27969:CDS | 55.0% | |
| GAAAATGCCGGAACCGACGA+CGG | + | chr4.4:11894795-11894814 | None:intergenic | 55.0% | |
| GCAGAGGGTGGCAAAATAGG+AGG | + | chr4.4:11896324-11896343 | None:intergenic | 55.0% | |
| GCCAGAAAGGGGAGACAAGT+GGG | + | chr4.4:11895529-11895548 | None:intergenic | 55.0% | |
| GCTGTGGAAATTCCTGTCGC+AGG | - | chr4.4:11894923-11894942 | MS.gene27969:CDS | 55.0% | |
| GGAGGTCCATGATCGAGCTA+CGG | + | chr4.4:11896306-11896325 | None:intergenic | 55.0% | |
| GGTGCTTAAGACTGCAAGGG+TGG | + | chr4.4:11896444-11896463 | None:intergenic | 55.0% | |
| TAAGACTGCAAGGGTGGCGA+TGG | + | chr4.4:11896438-11896457 | None:intergenic | 55.0% | |
| TCCCACTTGTCTCCCCTTTC+TGG | - | chr4.4:11895525-11895544 | MS.gene27969:CDS | 55.0% | |
| TGCAGTGTCAACTATGGCCG+AGG | - | chr4.4:11896643-11896662 | MS.gene27969:intron | 55.0% | |
| ! | GGGCATTTTCAGCGCCATTG+TGG | - | chr4.4:11897251-11897270 | MS.gene27969:CDS | 55.0% |
| !! | GGGGGGTACCTTTAGTTCCT+TGG | - | chr4.4:11897332-11897351 | MS.gene27969:CDS | 55.0% |
| CAAGGGTGGCGATGGCTATG+AGG | + | chr4.4:11896430-11896449 | None:intergenic | 60.0% | |
| CACGGGTCTTGAAGCTCGTG+AGG | - | chr4.4:11894820-11894839 | MS.gene27969:CDS | 60.0% | |
| CAGCAGCCGTAGCTCGATCA+TGG | - | chr4.4:11896297-11896316 | MS.gene27969:intron | 60.0% | |
| CGCCAGAAAGGGGAGACAAG+TGG | + | chr4.4:11895530-11895549 | None:intergenic | 60.0% | |
| CTTGAAGCTCGTGAGGAGGC+TGG | - | chr4.4:11894827-11894846 | MS.gene27969:CDS | 60.0% | |
| GGGTCTTGAAGCTCGTGAGG+AGG | - | chr4.4:11894823-11894842 | MS.gene27969:CDS | 60.0% | |
| ! | TCTCCCCTTTCTGGCGGTCT+TGG | - | chr4.4:11895534-11895553 | MS.gene27969:CDS | 60.0% |
| TTCGGAATCGGCGCCGTCGT+CGG | - | chr4.4:11894779-11894798 | MS.gene27969:CDS | 65.0% | |
| !! | ATCGGCGCCGTCGTCGGTTC+CGG | - | chr4.4:11894785-11894804 | MS.gene27969:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 11894554 | 11897576 | 11894554 | ID=MS.gene27969 |
| chr4.4 | mRNA | 11894554 | 11897576 | 11894554 | ID=MS.gene27969.t1;Parent=MS.gene27969 |
| chr4.4 | exon | 11897186 | 11897576 | 11897186 | ID=MS.gene27969.t1.exon1;Parent=MS.gene27969.t1 |
| chr4.4 | CDS | 11897186 | 11897576 | 11897186 | ID=cds.MS.gene27969.t1;Parent=MS.gene27969.t1 |
| chr4.4 | exon | 11894554 | 11895923 | 11894554 | ID=MS.gene27969.t1.exon2;Parent=MS.gene27969.t1 |
| chr4.4 | CDS | 11894554 | 11895923 | 11894554 | ID=cds.MS.gene27969.t1;Parent=MS.gene27969.t1 |
| Gene Sequence |
| Protein sequence |
