Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28122.t1 | EFH50611.1 | 100 | 92 | 0 | 0 | 18 | 109 | 2 | 93 | 3.10E-48 | 201.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28122.t1 | F4K4E3 | 98.9 | 92 | 1 | 0 | 18 | 109 | 2 | 93 | 1.7e-50 | 200.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28122.t1 | G7KRW1 | 100.0 | 92 | 0 | 0 | 18 | 109 | 2 | 93 | 2.2e-48 | 201.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene051241 | MS.gene28122 | PPI |
| MS.gene28122 | MS.gene23567 | PPI |
| MS.gene28122 | MS.gene023131 | PPI |
| MS.gene28122 | MS.gene028322 | PPI |
| MS.gene28122 | MS.gene44813 | PPI |
| MS.gene28122 | MS.gene006962 | PPI |
| MS.gene28122 | MS.gene055162 | PPI |
| MS.gene28122 | MS.gene36469 | PPI |
| MS.gene28122 | MS.gene051172 | PPI |
| MS.gene28122 | MS.gene35136 | PPI |
| MS.gene28122 | MS.gene051245 | PPI |
| MS.gene43700 | MS.gene28122 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28122.t1 | MTR_8g058537 | 100.000 | 145 | 0 | 0 | 18 | 162 | 2 | 146 | 3.10e-104 | 295 |
| MS.gene28122.t1 | MTR_8g058420 | 100.000 | 145 | 0 | 0 | 18 | 162 | 2 | 146 | 3.10e-104 | 295 |
| MS.gene28122.t1 | MTR_7g108700 | 100.000 | 143 | 0 | 0 | 18 | 160 | 2 | 144 | 1.25e-102 | 291 |
| MS.gene28122.t1 | MTR_8g091620 | 98.601 | 143 | 2 | 0 | 18 | 160 | 2 | 144 | 5.73e-101 | 286 |
| MS.gene28122.t1 | MTR_1g088710 | 72.277 | 101 | 10 | 1 | 17 | 117 | 1 | 83 | 2.80e-48 | 152 |
| MS.gene28122.t1 | MTR_8g092200 | 32.520 | 123 | 79 | 2 | 16 | 138 | 5 | 123 | 4.63e-15 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28122.t1 | AT5G27720 | 76.812 | 138 | 11 | 1 | 18 | 155 | 2 | 118 | 8.63e-59 | 179 |
| MS.gene28122.t1 | AT1G76300 | 33.663 | 101 | 66 | 1 | 16 | 116 | 5 | 104 | 1.14e-14 | 67.0 |
| MS.gene28122.t1 | AT1G20580 | 33.981 | 103 | 65 | 2 | 16 | 116 | 5 | 106 | 4.97e-14 | 65.5 |
Find 50 sgRNAs with CRISPR-Local
Find 132 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTAGGATGGAGATAGATTT+TGG | 0.264813 | 4.4:+9961834 | MS.gene28122:intron |
| AGGGAGGATGCTGCTGGTGC+TGG | 0.332056 | 4.4:+9962949 | MS.gene28122:CDS |
| TTTCCTCGTATGTAGCATTC+AGG | 0.370451 | 4.4:-9961863 | None:intergenic |
| ACCTGGTGTGGGACGTGGTA+GGG | 0.379220 | 4.4:+9962918 | MS.gene28122:CDS |
| GCTAGAGGAGCCGGAGGCCG+AGG | 0.384622 | 4.4:+9963018 | MS.gene28122:CDS |
| TTCCTCCAGGCTTTCCACCT+TGG | 0.401016 | 4.4:-9963050 | None:intergenic |
| CCTGGTGTGGGACGTGGTAG+GGG | 0.408573 | 4.4:+9962919 | MS.gene28122:CDS |
| GATGGTGGGGCTAGAGGAGC+CGG | 0.409841 | 4.4:+9963009 | MS.gene28122:CDS |
| TTAGGTTATCGACAAAGTTC+AGG | 0.410051 | 4.4:+9962391 | MS.gene28122:intron |
| GAGGAGCCGGAGGCCGAGGC+AGG | 0.410182 | 4.4:+9963022 | MS.gene28122:CDS |
| AGAGACATATAATGGGCATT+TGG | 0.429273 | 4.4:+9961660 | MS.gene28122:CDS |
| GCTAGCCCTGCCTCGGCCTC+CGG | 0.431923 | 4.4:-9963028 | None:intergenic |
| GATTTACCTCTGCTTCCTCC+AGG | 0.434977 | 4.4:-9963063 | None:intergenic |
| CACCTTGGCTAGCCCTGCCT+CGG | 0.439949 | 4.4:-9963035 | None:intergenic |
| GCTAGCCAAGGTGGAAAGCC+TGG | 0.450993 | 4.4:+9963045 | MS.gene28122:CDS |
| GACGTGGTAGGGGTAGAGGT+AGG | 0.454494 | 4.4:+9962929 | MS.gene28122:CDS |
| CACCTGGTGTGGGACGTGGT+AGG | 0.455282 | 4.4:+9962917 | MS.gene28122:CDS |
| AGAGGTAGGGAGGATGCTGC+TGG | 0.457443 | 4.4:+9962943 | MS.gene28122:CDS |
| GTGGGACGTGGTAGGGGTAG+AGG | 0.457910 | 4.4:+9962925 | MS.gene28122:CDS |
| TAGAGGTACAAATAACTTCT+CGG | 0.459260 | 4.4:-9961714 | None:intergenic |
| CAGGAAGAGAAGAGCCGTAC+AGG | 0.463623 | 4.4:+9962410 | MS.gene28122:CDS |
| GCTGGTGGACGCCAAACAAA+AGG | 0.478487 | 4.4:+9962967 | MS.gene28122:CDS |
| AAGCCACCTGGTGTGGGACG+TGG | 0.485336 | 4.4:+9962913 | MS.gene28122:CDS |
| CCACCATTACATACCTCATC+AGG | 0.487502 | 4.4:-9961908 | None:intergenic |
| ATTTGGTTAATTGCGATACA+TGG | 0.494307 | 4.4:+9961677 | MS.gene28122:CDS |
| TTTGATGATGGTGGGGCTAG+AGG | 0.507529 | 4.4:+9963003 | MS.gene28122:CDS |
| ACGTGGTAGGGGTAGAGGTA+GGG | 0.508609 | 4.4:+9962930 | MS.gene28122:CDS |
| CCCCTACCACGTCCCACACC+AGG | 0.510334 | 4.4:-9962919 | None:intergenic |
| GGACGCCAAACAAAAGGCAC+TGG | 0.511420 | 4.4:+9962973 | MS.gene28122:CDS |
| AAAATGGAGAGACATATAAT+GGG | 0.512411 | 4.4:+9961653 | MS.gene28122:CDS |
| GAGGATGCTGCTGGTGCTGG+TGG | 0.518067 | 4.4:+9962952 | MS.gene28122:CDS |
| GCAGTCTTAAGAAGAGAAAG+AGG | 0.523025 | 4.4:-9961497 | None:intergenic |
| CAAACAAAAGGCACTGGGCG+TGG | 0.536007 | 4.4:+9962979 | MS.gene28122:CDS |
| AGATCGCAAGCCACCTGGTG+TGG | 0.544354 | 4.4:+9962906 | MS.gene28122:intron |
| TGGTAGGGGTAGAGGTAGGG+AGG | 0.553128 | 4.4:+9962933 | MS.gene28122:CDS |
| GACTGCACAAGGCCACCCTA+TGG | 0.555565 | 4.4:+9961514 | MS.gene28122:CDS |
| AGGAGCCGGAGGCCGAGGCA+GGG | 0.555849 | 4.4:+9963023 | MS.gene28122:CDS |
| GATCGCAAGCCACCTGGTGT+GGG | 0.560007 | 4.4:+9962907 | MS.gene28122:intron |
| AATAATACTTCGTACCTGTA+CGG | 0.560276 | 4.4:-9962424 | None:intergenic |
| GGCCGAGGCAGGGCTAGCCA+AGG | 0.579681 | 4.4:+9963033 | MS.gene28122:CDS |
| GGAAAGCCTGGAGGAAGCAG+AGG | 0.582079 | 4.4:+9963057 | MS.gene28122:CDS |
| TCTCTTCTTAAGACTGCACA+AGG | 0.621157 | 4.4:+9961503 | MS.gene28122:CDS |
| CGAGGCAGGGCTAGCCAAGG+TGG | 0.621999 | 4.4:+9963036 | MS.gene28122:CDS |
| GACGCCAAACAAAAGGCACT+GGG | 0.628038 | 4.4:+9962974 | MS.gene28122:CDS |
| GGTGGGGCTAGAGGAGCCGG+AGG | 0.637584 | 4.4:+9963012 | MS.gene28122:CDS |
| GTACCTTCGAGTTCCTGATG+AGG | 0.661844 | 4.4:+9961895 | MS.gene28122:CDS |
| CTACCACGTCCCACACCAGG+TGG | 0.667375 | 4.4:-9962916 | None:intergenic |
| ATACCTCATCAGGAACTCGA+AGG | 0.675708 | 4.4:-9961898 | None:intergenic |
| ATGCCTGAATGCTACATACG+AGG | 0.709688 | 4.4:+9961860 | MS.gene28122:CDS |
| AGCCAAGGTGGAAAGCCTGG+AGG | 0.717081 | 4.4:+9963048 | MS.gene28122:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAAAGTAAAATAAATAAAA+AGG | - | chr4.4:9961553-9961572 | None:intergenic | 10.0% |
| !!! | AACTTTATTTTTTATTTAAC+TGG | - | chr4.4:9962863-9962882 | None:intergenic | 10.0% |
| !!! | TTTTCTTAAATAACATAAAA+GGG | - | chr4.4:9962145-9962164 | None:intergenic | 10.0% |
| !!! | TTTTTATTTATTTTACTTTG+TGG | + | chr4.4:9961552-9961571 | MS.gene28122:intron | 10.0% |
| !! | AATCAGAAGAAAATTATATA+TGG | - | chr4.4:9962740-9962759 | None:intergenic | 15.0% |
| !!! | GTTTTCTTAAATAACATAAA+AGG | - | chr4.4:9962146-9962165 | None:intergenic | 15.0% |
| !!! | TTTAATTTGTTATTGTTGAA+AGG | + | chr4.4:9961780-9961799 | MS.gene28122:intron | 15.0% |
| !! | AAATTATCTGATTCACTAAA+AGG | - | chr4.4:9962312-9962331 | None:intergenic | 20.0% |
| !! | AATTATCTGATTCACTAAAA+GGG | - | chr4.4:9962311-9962330 | None:intergenic | 20.0% |
| !! | AGTTATTTATAAAGAGATCA+AGG | + | chr4.4:9961947-9961966 | MS.gene28122:intron | 20.0% |
| !! | GTTATTTATAAAGAGATCAA+GGG | + | chr4.4:9961948-9961967 | MS.gene28122:intron | 20.0% |
| !! | TATTTCAATCCAAAATCTAA+AGG | - | chr4.4:9962574-9962593 | None:intergenic | 20.0% |
| !! | TTTAAACTAATGATATGAAG+TGG | - | chr4.4:9962027-9962046 | None:intergenic | 20.0% |
| !!! | ATGTTATTTAAGAAAACCAT+TGG | + | chr4.4:9962149-9962168 | MS.gene28122:intron | 20.0% |
| !!! | TTAGATTTTGGATTGAAATA+TGG | + | chr4.4:9962574-9962593 | MS.gene28122:intron | 20.0% |
| ! | AAAAATGGAGAGACATATAA+TGG | + | chr4.4:9961652-9961671 | MS.gene28122:CDS | 25.0% |
| ! | AAAATGGAGAGACATATAAT+GGG | + | chr4.4:9961653-9961672 | MS.gene28122:CDS | 25.0% |
| ! | AGCTGCAACAAAAAAAAAAA+AGG | - | chr4.4:9961476-9961495 | None:intergenic | 25.0% |
| ! | TGATAAATCCTAAATTGACT+TGG | + | chr4.4:9962498-9962517 | MS.gene28122:intron | 25.0% |
| ! | TTACCTTGATACATGAATAT+TGG | + | chr4.4:9962693-9962712 | MS.gene28122:intron | 25.0% |
| !!! | AAAAAAGAGCATTACTTTAG+AGG | - | chr4.4:9961734-9961753 | None:intergenic | 25.0% |
| !!! | TATGAATTTTGGTTGAAACT+GGG | + | chr4.4:9961809-9961828 | MS.gene28122:intron | 25.0% |
| !!! | TGTTTTATTGCCTTTGATTT+AGG | + | chr4.4:9962373-9962392 | MS.gene28122:intron | 25.0% |
| !!! | TTATGAATTTTGGTTGAAAC+TGG | + | chr4.4:9961808-9961827 | MS.gene28122:intron | 25.0% |
| AAGCTGAGTAAGATATAAAG+TGG | + | chr4.4:9962528-9962547 | MS.gene28122:intron | 30.0% | |
| AATAATACTTCGTACCTGTA+CGG | - | chr4.4:9962427-9962446 | None:intergenic | 30.0% | |
| ACACCAATATTCATGTATCA+AGG | - | chr4.4:9962699-9962718 | None:intergenic | 30.0% | |
| AGATTGATATGTTGGAATAG+TGG | + | chr4.4:9962071-9962090 | MS.gene28122:intron | 30.0% | |
| ATTTGGTTAATTGCGATACA+TGG | + | chr4.4:9961677-9961696 | MS.gene28122:CDS | 30.0% | |
| GCAATAGTAGATTGATATGT+TGG | + | chr4.4:9962063-9962082 | MS.gene28122:intron | 30.0% | |
| TAAGAAAACCATTGGTGAAT+AGG | + | chr4.4:9962157-9962176 | MS.gene28122:intron | 30.0% | |
| TTGTCGATAACCTAAATCAA+AGG | - | chr4.4:9962386-9962405 | None:intergenic | 30.0% | |
| ! | AATCTGACACCTTTAGATTT+TGG | + | chr4.4:9962562-9962581 | MS.gene28122:intron | 30.0% |
| ! | TAGAGGTACAAATAACTTCT+CGG | - | chr4.4:9961717-9961736 | None:intergenic | 30.0% |
| ! | TTCTGATTGATTCTGACTTA+GGG | + | chr4.4:9962752-9962771 | MS.gene28122:intron | 30.0% |
| !! | AATCCTAAATTGACTTGGAA+TGG | + | chr4.4:9962503-9962522 | MS.gene28122:intron | 30.0% |
| !! | AGGTTTTTGTTACTTACCAT+AGG | - | chr4.4:9961533-9961552 | None:intergenic | 30.0% |
| !! | ATCCTAAATTGACTTGGAAT+GGG | + | chr4.4:9962504-9962523 | MS.gene28122:intron | 30.0% |
| !! | ATTTGTTATTGTTGAAAGGC+TGG | + | chr4.4:9961784-9961803 | MS.gene28122:intron | 30.0% |
| !! | GGTTTTTGTTACTTACCATA+GGG | - | chr4.4:9961532-9961551 | None:intergenic | 30.0% |
| !! | TTGGAATAGTGGATTCTTAT+TGG | + | chr4.4:9962082-9962101 | MS.gene28122:intron | 30.0% |
| !! | TTTGAACTTGTTGTAACAGT+TGG | + | chr4.4:9961621-9961640 | MS.gene28122:intron | 30.0% |
| !!! | AAAGGCTGGTTTATGAATTT+TGG | + | chr4.4:9961798-9961817 | MS.gene28122:intron | 30.0% |
| AAATGGCATTTCAACTTGTG+TGG | - | chr4.4:9962829-9962848 | None:intergenic | 35.0% | |
| AACCTTACCTTGTGATCTAT+TGG | + | chr4.4:9962194-9962213 | MS.gene28122:intron | 35.0% | |
| AATGGCATTTCAACTTGTGT+GGG | - | chr4.4:9962828-9962847 | None:intergenic | 35.0% | |
| TATTGGTCATGGGTTTAGTT+GGG | + | chr4.4:9962211-9962230 | MS.gene28122:intron | 35.0% | |
| TTAGGTTATCGACAAAGTTC+AGG | + | chr4.4:9962391-9962410 | MS.gene28122:intron | 35.0% | |
| ! | ACACTACAGAGATGTAGTTT+TGG | - | chr4.4:9962611-9962630 | None:intergenic | 35.0% |
| ! | ACTACATCTCTGTAGTGTTT+TGG | + | chr4.4:9962613-9962632 | MS.gene28122:intron | 35.0% |
| ! | CTTCTGATTGATTCTGACTT+AGG | + | chr4.4:9962751-9962770 | MS.gene28122:intron | 35.0% |
| ! | TGTAGGATGGAGATAGATTT+TGG | + | chr4.4:9961834-9961853 | MS.gene28122:intron | 35.0% |
| !! | AGAGACATATAATGGGCATT+TGG | + | chr4.4:9961660-9961679 | MS.gene28122:CDS | 35.0% |
| !! | TTTTGTTACTTACCATAGGG+TGG | - | chr4.4:9961529-9961548 | None:intergenic | 35.0% |
| AACTGGACGACTGCATAAAA+TGG | - | chr4.4:9962846-9962865 | None:intergenic | 40.0% | |
| ACCCAACAAACTTTCTCTGT+TGG | + | chr4.4:9962654-9962673 | MS.gene28122:intron | 40.0% | |
| ACCCAACAGAGAAAGTTTGT+TGG | - | chr4.4:9962659-9962678 | None:intergenic | 40.0% | |
| ACCTTGTGATCTATTGGTCA+TGG | + | chr4.4:9962200-9962219 | MS.gene28122:intron | 40.0% | |
| CCCAACAAACTTTCTCTGTT+GGG | + | chr4.4:9962655-9962674 | MS.gene28122:intron | 40.0% | |
| CCTTGTGATCTATTGGTCAT+GGG | + | chr4.4:9962201-9962220 | MS.gene28122:intron | 40.0% | |
| CTATTGGTCATGGGTTTAGT+TGG | + | chr4.4:9962210-9962229 | MS.gene28122:intron | 40.0% | |
| CTTAGCAACCTATTCACCAA+TGG | - | chr4.4:9962168-9962187 | None:intergenic | 40.0% | |
| GACCAATAGATCACAAGGTA+AGG | - | chr4.4:9962199-9962218 | None:intergenic | 40.0% | |
| GCAGTCTTAAGAAGAGAAAG+AGG | - | chr4.4:9961500-9961519 | None:intergenic | 40.0% | |
| GTTCCTGATGAGGTATGTAA+TGG | + | chr4.4:9961905-9961924 | MS.gene28122:intron | 40.0% | |
| TCTCTTCTTAAGACTGCACA+AGG | + | chr4.4:9961503-9961522 | MS.gene28122:CDS | 40.0% | |
| TGCCCATTCCAAGTCAATTT+AGG | - | chr4.4:9962509-9962528 | None:intergenic | 40.0% | |
| TGGTGAATAGGTTGCTAAGA+AGG | + | chr4.4:9962169-9962188 | MS.gene28122:intron | 40.0% | |
| TTGAAACTGGGAATGTAGGA+TGG | + | chr4.4:9961821-9961840 | MS.gene28122:intron | 40.0% | |
| TTGGTTGAAACTGGGAATGT+AGG | + | chr4.4:9961817-9961836 | MS.gene28122:intron | 40.0% | |
| TTTCCTCGTATGTAGCATTC+AGG | - | chr4.4:9961866-9961885 | None:intergenic | 40.0% | |
| ! | AGGATGGAGATAGATTTTGG+CGG | + | chr4.4:9961837-9961856 | MS.gene28122:intron | 40.0% |
| ! | AGGTATGTAATGGTGGTGAT+TGG | + | chr4.4:9961915-9961934 | MS.gene28122:intron | 40.0% |
| ! | CCCAACAGAGAAAGTTTGTT+GGG | - | chr4.4:9962658-9962677 | None:intergenic | 40.0% |
| !! | GAACTTGTTGTAACAGTTGG+TGG | + | chr4.4:9961624-9961643 | MS.gene28122:intron | 40.0% |
| !! | TCTAAAGGTGTCAGATTCAC+AGG | - | chr4.4:9962559-9962578 | None:intergenic | 40.0% |
| !!! | CTACAGAGATGTAGTTTTGG+TGG | - | chr4.4:9962608-9962627 | None:intergenic | 40.0% |
| AGAGTATGAGCACAACCTTG+AGG | - | chr4.4:9962263-9962282 | None:intergenic | 45.0% | |
| ATACCTCATCAGGAACTCGA+AGG | - | chr4.4:9961901-9961920 | None:intergenic | 45.0% | |
| ATGCCTGAATGCTACATACG+AGG | + | chr4.4:9961860-9961879 | MS.gene28122:CDS | 45.0% | |
| CCACCATTACATACCTCATC+AGG | - | chr4.4:9961911-9961930 | None:intergenic | 45.0% | |
| CCCATGACCAATAGATCACA+AGG | - | chr4.4:9962204-9962223 | None:intergenic | 45.0% | |
| CCTGATGAGGTATGTAATGG+TGG | + | chr4.4:9961908-9961927 | MS.gene28122:intron | 45.0% | |
| GGGAAAAACCTTGTGCTTGA+GGG | + | chr4.4:9962231-9962250 | MS.gene28122:intron | 45.0% | |
| TGGGAAAAACCTTGTGCTTG+AGG | + | chr4.4:9962230-9962249 | MS.gene28122:intron | 45.0% | |
| !! | CAGTTGGTGGAGCTGAAAAA+TGG | + | chr4.4:9961637-9961656 | MS.gene28122:intron | 45.0% |
| GATTTACCTCTGCTTCCTCC+AGG | - | chr4.4:9963066-9963085 | None:intergenic | 50.0% | |
| GCTTGAGGGTTTAAGCCTCA+AGG | + | chr4.4:9962245-9962264 | MS.gene28122:intron | 50.0% | |
| GGCTTAAACCCTCAAGCACA+AGG | - | chr4.4:9962242-9962261 | None:intergenic | 50.0% | |
| ! | GGTGGCTTGCGATCTGAAAA+AGG | - | chr4.4:9962901-9962920 | None:intergenic | 50.0% |
| ! | GTACCTTCGAGTTCCTGATG+AGG | + | chr4.4:9961895-9961914 | MS.gene28122:CDS | 50.0% |
| ! | TTTTCAGATCGCAAGCCACC+TGG | + | chr4.4:9962901-9962920 | MS.gene28122:intron | 50.0% |
| !! | GACGCCAAACAAAAGGCACT+GGG | + | chr4.4:9962974-9962993 | MS.gene28122:CDS | 50.0% |
| !! | TTTGATGATGGTGGGGCTAG+AGG | + | chr4.4:9963003-9963022 | MS.gene28122:CDS | 50.0% |
| !!! | ACTGGGCGTGGTTTTGATGA+TGG | + | chr4.4:9962991-9963010 | MS.gene28122:CDS | 50.0% |
| !!! | GCGTGGTTTTGATGATGGTG+GGG | + | chr4.4:9962996-9963015 | MS.gene28122:CDS | 50.0% |
| !!! | GGCGTGGTTTTGATGATGGT+GGG | + | chr4.4:9962995-9963014 | MS.gene28122:CDS | 50.0% |
| ACGTGGTAGGGGTAGAGGTA+GGG | + | chr4.4:9962930-9962949 | MS.gene28122:CDS | 55.0% | |
| CAGGAAGAGAAGAGCCGTAC+AGG | + | chr4.4:9962410-9962429 | MS.gene28122:CDS | 55.0% | |
| TTCCTCCAGGCTTTCCACCT+TGG | - | chr4.4:9963053-9963072 | None:intergenic | 55.0% | |
| ! | CACGCCCAGTGCCTTTTGTT+TGG | - | chr4.4:9962981-9963000 | None:intergenic | 55.0% |
| ! | GCTGGTGGACGCCAAACAAA+AGG | + | chr4.4:9962967-9962986 | MS.gene28122:CDS | 55.0% |
| ! | GGACGCCAAACAAAAGGCAC+TGG | + | chr4.4:9962973-9962992 | MS.gene28122:CDS | 55.0% |
| !! | CAAACAAAAGGCACTGGGCG+TGG | + | chr4.4:9962979-9962998 | MS.gene28122:CDS | 55.0% |
| !!! | GGGCGTGGTTTTGATGATGG+TGG | + | chr4.4:9962994-9963013 | MS.gene28122:CDS | 55.0% |
| ACCTGGTGTGGGACGTGGTA+GGG | + | chr4.4:9962918-9962937 | MS.gene28122:CDS | 60.0% | |
| AGAGGTAGGGAGGATGCTGC+TGG | + | chr4.4:9962943-9962962 | MS.gene28122:CDS | 60.0% | |
| AGATCGCAAGCCACCTGGTG+TGG | + | chr4.4:9962906-9962925 | MS.gene28122:intron | 60.0% | |
| AGCCAAGGTGGAAAGCCTGG+AGG | + | chr4.4:9963048-9963067 | MS.gene28122:CDS | 60.0% | |
| GACGTGGTAGGGGTAGAGGT+AGG | + | chr4.4:9962929-9962948 | MS.gene28122:CDS | 60.0% | |
| GACTGCACAAGGCCACCCTA+TGG | + | chr4.4:9961514-9961533 | MS.gene28122:CDS | 60.0% | |
| GATCGCAAGCCACCTGGTGT+GGG | + | chr4.4:9962907-9962926 | MS.gene28122:intron | 60.0% | |
| GCTAGCCAAGGTGGAAAGCC+TGG | + | chr4.4:9963045-9963064 | MS.gene28122:CDS | 60.0% | |
| GGAAAGCCTGGAGGAAGCAG+AGG | + | chr4.4:9963057-9963076 | MS.gene28122:CDS | 60.0% | |
| TGGTAGGGGTAGAGGTAGGG+AGG | + | chr4.4:9962933-9962952 | MS.gene28122:CDS | 60.0% | |
| AAGCCACCTGGTGTGGGACG+TGG | + | chr4.4:9962913-9962932 | MS.gene28122:CDS | 65.0% | |
| AGGGAGGATGCTGCTGGTGC+TGG | + | chr4.4:9962949-9962968 | MS.gene28122:CDS | 65.0% | |
| CACCTGGTGTGGGACGTGGT+AGG | + | chr4.4:9962917-9962936 | MS.gene28122:CDS | 65.0% | |
| CCTGGTGTGGGACGTGGTAG+GGG | + | chr4.4:9962919-9962938 | MS.gene28122:CDS | 65.0% | |
| CTACCACGTCCCACACCAGG+TGG | - | chr4.4:9962919-9962938 | None:intergenic | 65.0% | |
| GTGGGACGTGGTAGGGGTAG+AGG | + | chr4.4:9962925-9962944 | MS.gene28122:CDS | 65.0% | |
| ! | CACCTTGGCTAGCCCTGCCT+CGG | - | chr4.4:9963038-9963057 | None:intergenic | 65.0% |
| ! | GAGGATGCTGCTGGTGCTGG+TGG | + | chr4.4:9962952-9962971 | MS.gene28122:CDS | 65.0% |
| !! | GATGGTGGGGCTAGAGGAGC+CGG | + | chr4.4:9963009-9963028 | MS.gene28122:CDS | 65.0% |
| CCCCTACCACGTCCCACACC+AGG | - | chr4.4:9962922-9962941 | None:intergenic | 70.0% | |
| !! | CGAGGCAGGGCTAGCCAAGG+TGG | + | chr4.4:9963036-9963055 | MS.gene28122:CDS | 70.0% |
| AGGAGCCGGAGGCCGAGGCA+GGG | + | chr4.4:9963023-9963042 | MS.gene28122:CDS | 75.0% | |
| GCTAGAGGAGCCGGAGGCCG+AGG | + | chr4.4:9963018-9963037 | MS.gene28122:CDS | 75.0% | |
| GCTAGCCCTGCCTCGGCCTC+CGG | - | chr4.4:9963031-9963050 | None:intergenic | 75.0% | |
| GGTGGGGCTAGAGGAGCCGG+AGG | + | chr4.4:9963012-9963031 | MS.gene28122:CDS | 75.0% | |
| !! | GGCCGAGGCAGGGCTAGCCA+AGG | + | chr4.4:9963033-9963052 | MS.gene28122:CDS | 75.0% |
| ! | GAGGAGCCGGAGGCCGAGGC+AGG | + | chr4.4:9963022-9963041 | MS.gene28122:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 9961443 | 9963089 | 9961443 | ID=MS.gene28122 |
| chr4.4 | mRNA | 9961443 | 9963089 | 9961443 | ID=MS.gene28122.t1;Parent=MS.gene28122 |
| chr4.4 | exon | 9961443 | 9961535 | 9961443 | ID=MS.gene28122.t1.exon1;Parent=MS.gene28122.t1 |
| chr4.4 | CDS | 9961443 | 9961535 | 9961443 | ID=cds.MS.gene28122.t1;Parent=MS.gene28122.t1 |
| chr4.4 | exon | 9961640 | 9961738 | 9961640 | ID=MS.gene28122.t1.exon2;Parent=MS.gene28122.t1 |
| chr4.4 | CDS | 9961640 | 9961738 | 9961640 | ID=cds.MS.gene28122.t1;Parent=MS.gene28122.t1 |
| chr4.4 | exon | 9961839 | 9961916 | 9961839 | ID=MS.gene28122.t1.exon3;Parent=MS.gene28122.t1 |
| chr4.4 | CDS | 9961839 | 9961916 | 9961839 | ID=cds.MS.gene28122.t1;Parent=MS.gene28122.t1 |
| chr4.4 | exon | 9962395 | 9962431 | 9962395 | ID=MS.gene28122.t1.exon4;Parent=MS.gene28122.t1 |
| chr4.4 | CDS | 9962395 | 9962431 | 9962395 | ID=cds.MS.gene28122.t1;Parent=MS.gene28122.t1 |
| chr4.4 | exon | 9962908 | 9963089 | 9962908 | ID=MS.gene28122.t1.exon5;Parent=MS.gene28122.t1 |
| chr4.4 | CDS | 9962908 | 9963089 | 9962908 | ID=cds.MS.gene28122.t1;Parent=MS.gene28122.t1 |
| Gene Sequence |
| Protein sequence |
