AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene29009


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene29009.t1 MTR_3g073860 90.844 557 51 0 1 557 1685 2241 0.0 1027
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene29009.t1 AT1G36160 75.719 556 134 1 1 556 1684 2238 0.0 889
MS.gene29009.t1 AT1G36160 75.719 556 134 1 1 556 1684 2238 0.0 889
MS.gene29009.t1 AT1G36180 74.910 554 138 1 1 554 1785 2337 0.0 879

Find 150 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGCTTCAGTTGACAAATAT+TGG 0.234765 3.2:-66562831 MS.gene29009:CDS
AATCCTCGTGCTGCCATTTC+TGG 0.235732 3.2:-66563917 MS.gene29009:CDS
TCTGGAACTCTAGATGTTAA+AGG 0.248026 3.2:-66563899 MS.gene29009:CDS
GTGCACTCCGAGGTGGGGCT+TGG 0.250635 3.2:-66563463 MS.gene29009:CDS
TCAACAATTGATTACTCTTA+AGG 0.291975 3.2:-66563297 MS.gene29009:CDS
ACCATTCGTGGCAAAGGATA+TGG 0.296782 3.2:-66564361 MS.gene29009:CDS
CAAGACTGCCCAAGCGATAT+TGG 0.299270 3.2:-66563648 MS.gene29009:CDS
TGGGTTGCTTGTATGTTCTT+AGG 0.328115 3.2:+66563510 None:intergenic
ATTTAGAACAAGAGAATTGT+TGG 0.349451 3.2:-66563339 MS.gene29009:CDS
AGTGGTAGTGGGGCCATTGC+CGG 0.356809 3.2:-66564319 MS.gene29009:CDS
TGCACTCCGAGGTGGGGCTT+GGG 0.358775 3.2:-66563462 MS.gene29009:CDS
GCAAACTGGAGAGGCTTTGC+GGG 0.363331 3.2:-66563590 MS.gene29009:CDS
TCGGCATTAAACAAAGTTCT+TGG 0.363639 3.2:-66564157 MS.gene29009:CDS
ACCAGAGTCTTTGTTACTCT+TGG 0.365428 3.2:+66563259 None:intergenic
GTGCTTATCTTGCAAGGCTT+GGG 0.366853 3.2:-66564228 MS.gene29009:CDS
TTCCTCAAGCCGGCCAAGTC+TGG 0.374336 3.2:-66563688 MS.gene29009:CDS
CCTCGGAGTGCACCCATCAT+TGG 0.376468 3.2:+66563473 None:intergenic
CGCAAACTGGAGAGGCTTTG+CGG 0.378710 3.2:-66563591 MS.gene29009:CDS
GATCAGCCTATGATTCTTAC+CGG 0.386443 3.2:-66564184 MS.gene29009:CDS
ACCCTTTGCAGCCATTCTTA+AGG 0.387806 3.2:+66563136 None:intergenic
CCAAGCATCTTCACTACCTT+TGG 0.391187 3.2:+66562938 None:intergenic
GTAGCTAAGCCACTTCAAAA+TGG 0.392176 3.2:+66564030 None:intergenic
CCATTGCCGGTGCCTATTCA+AGG 0.393558 3.2:-66564306 MS.gene29009:CDS
GCAGTCTTGGTTGAAGAATC+AGG 0.394309 3.2:+66563662 None:intergenic
AGTTGTTCATCTTACAGTTT+CGG 0.400691 3.2:-66564074 MS.gene29009:CDS
TCAACTGAAGCAACAGTCTC+TGG 0.401233 3.2:+66562841 None:intergenic
TAAAGGTAATGCCGTTGAAC+CGG 0.407690 3.2:-66563381 MS.gene29009:CDS
CGAGGATTGCATGAATTTCC+CGG 0.412377 3.2:+66563932 None:intergenic
CCTAAAATCATGTCAACAAA+TGG 0.417337 3.2:-66564097 MS.gene29009:CDS
TTGATCTCAATCATTCCTTC+CGG 0.418592 3.2:+66563362 None:intergenic
TTCATTGTATGCCCTTGAAT+AGG 0.418782 3.2:+66564294 None:intergenic
GGTGCTTATCTTGCAAGGCT+TGG 0.427196 3.2:-66564229 MS.gene29009:CDS
TGGGCAAGGACAGTTGTTAC+AGG 0.429470 3.2:-66563821 MS.gene29009:CDS
GAGGGAAGTGGAGTATTTAC+CGG 0.433082 3.2:-66563951 MS.gene29009:CDS
GAGGCTTTGCGGGTGGGCAA+AGG 0.433561 3.2:-66563580 MS.gene29009:CDS
CTCGGAGTGCACCCATCATT+GGG 0.437610 3.2:+66563474 None:intergenic
AGGCTTTGCGGGTGGGCAAA+GGG 0.438540 3.2:-66563579 MS.gene29009:CDS
CAATATCGCTTGGGCAGTCT+TGG 0.446016 3.2:+66563649 None:intergenic
GGTGTAATCAAAGAAGTTAT+CGG 0.446036 3.2:-66563116 MS.gene29009:CDS
CGGCATTACCTTTAGCCGTT+CGG 0.446414 3.2:+66563390 None:intergenic
ACAGTTTCGGACGACCTTGA+AGG 0.447055 3.2:-66564061 MS.gene29009:CDS
TATTGAAATCCAATATCGCT+TGG 0.452614 3.2:+66563639 None:intergenic
AACATCTAGAGTTCCAGAAA+TGG 0.465185 3.2:+66563904 None:intergenic
AAATGGAAGAAACGCCTTCA+AGG 0.468812 3.2:+66564047 None:intergenic
TTCGAAGGAATTCTTCAGGC+TGG 0.470358 3.2:-66563551 MS.gene29009:CDS
TTTGAACTCTTGAGTGGTAG+TGG 0.472325 3.2:-66564331 MS.gene29009:CDS
AGCTTTGTGGAGACACTAGA+AGG 0.473664 3.2:-66563845 MS.gene29009:CDS
CGGAGATTGCACAGGAGAAT+CGG 0.473835 3.2:-66563065 MS.gene29009:CDS
TCCGGTACAACTGTTGGAAT+TGG 0.481182 3.2:-66564250 MS.gene29009:CDS
CATTAAACAAAGTTCTTGGT+AGG 0.481641 3.2:-66564153 MS.gene29009:CDS
TGGCAGAAACATATGACAAT+TGG 0.482231 3.2:+66563000 None:intergenic
TGATGGGTGCACTCCGAGGT+GGG 0.482339 3.2:-66563469 MS.gene29009:CDS
CCATTCTTTGAGCAAGTTCG+TGG 0.484265 3.2:+66562980 None:intergenic
TTGAACTCTTGAGTGGTAGT+GGG 0.484304 3.2:-66564330 MS.gene29009:CDS
TCAGGCTGGTTCAACTATTG+TGG 0.486724 3.2:-66563537 MS.gene29009:CDS
TTCCTTAAGAATGGCTGCAA+AGG 0.492840 3.2:-66563138 MS.gene29009:CDS
TCCTTAAGAATGGCTGCAAA+GGG 0.494029 3.2:-66563137 MS.gene29009:CDS
GCATGATACTTCCTTAAGAA+TGG 0.495850 3.2:-66563147 MS.gene29009:CDS
TCAAGCTGACATGGATCAGC+AGG 0.500220 3.2:+66563728 None:intergenic
GGATCAATGGGCTTTACAAT+GGG 0.503899 3.2:+66563980 None:intergenic
CTCTAGATGTTAAAGGAAAG+TGG 0.508134 3.2:-66563892 MS.gene29009:CDS
TATGCTGACCGAACGGCTAA+AGG 0.508351 3.2:-66563398 MS.gene29009:CDS
CCACGAACTTGCTCAAAGAA+TGG 0.512922 3.2:-66562980 MS.gene29009:CDS
ATTGAAATCCAATATCGCTT+GGG 0.516079 3.2:+66563640 None:intergenic
CCTGAAGAATTCCTTCGAAA+AGG 0.516616 3.2:+66563555 None:intergenic
TTTGTATACATCCCAATGAT+GGG 0.518726 3.2:-66563485 MS.gene29009:CDS
AACTGGAGAGGCTTTGCGGG+TGG 0.523030 3.2:-66563587 MS.gene29009:CDS
TACAGCTCTCAGATGCAACT+TGG 0.524322 3.2:-66564124 MS.gene29009:CDS
CCTTGAATAGGCACCGGCAA+TGG 0.525205 3.2:+66564306 None:intergenic
ACGATGAAGCCTTCTTCAGA+TGG 0.525628 3.2:-66562911 MS.gene29009:CDS
GAATTGGTGCTTATCTTGCA+AGG 0.529052 3.2:-66564234 MS.gene29009:CDS
AATCATTCCTTCCGGTTCAA+CGG 0.529117 3.2:+66563370 None:intergenic
TCCATATCCTTTGCCACGAA+TGG 0.530870 3.2:+66564360 None:intergenic
TATGCGTCCGGTACAACTGT+TGG 0.537088 3.2:-66564256 MS.gene29009:CDS
TTGAAAGTGGAGAAACAAGA+TGG 0.537377 3.2:-66564393 MS.gene29009:CDS
ACCAATTCCAACAGTTGTAC+CGG 0.538265 3.2:+66564249 None:intergenic
ATTAAACAAAGTTCTTGGTA+GGG 0.541421 3.2:-66564152 MS.gene29009:CDS
ATCATCCCTCCATCTGAAGA+AGG 0.543921 3.2:+66562902 None:intergenic
TTGTGGAGACACTAGAAGGA+TGG 0.544026 3.2:-66563841 MS.gene29009:CDS
AATACTCCACTTCCCTCTGT+GGG 0.546707 3.2:+66563957 None:intergenic
CATGAATTAAAGCTTGAAAG+TGG 0.549222 3.2:-66564406 MS.gene29009:CDS
GATGGGTGCACTCCGAGGTG+GGG 0.549796 3.2:-66563468 MS.gene29009:CDS
GGGATCAATGGGCTTTACAA+TGG 0.549801 3.2:+66563979 None:intergenic
ACTGGAGAGGCTTTGCGGGT+GGG 0.552538 3.2:-66563586 MS.gene29009:CDS
GTTACAGGAAGGGCAAAGCT+TGG 0.552835 3.2:-66563806 MS.gene29009:CDS
ATGATGGGTGCACTCCGAGG+TGG 0.552875 3.2:-66563470 MS.gene29009:CDS
AGCTACATTCCTTCTCATGT+AGG 0.555262 3.2:-66564013 MS.gene29009:CDS
TTATCGGTTGGCGTAACTCA+CGG 0.555340 3.2:-66563100 MS.gene29009:CDS
TTCATTCTCGCAAACTGGAG+AGG 0.555637 3.2:-66563599 MS.gene29009:CDS
ATAGATACCATTCGTGGCAA+AGG 0.555901 3.2:-66564367 MS.gene29009:CDS
CATTGCCGGTGCCTATTCAA+GGG 0.560077 3.2:-66564305 MS.gene29009:CDS
TCGTGAGAATCAAGCTGACA+TGG 0.560925 3.2:+66563719 None:intergenic
GTTAAAGGAAAGTGGCTGAA+AGG 0.561897 3.2:-66563884 MS.gene29009:CDS
ATCAGGAAACCAGACTTGGC+CGG 0.561985 3.2:+66563679 None:intergenic
AAGAATCAGGAAACCAGACT+TGG 0.565570 3.2:+66563675 None:intergenic
CAAGGACAGTTGTTACAGGA+AGG 0.566960 3.2:-66563817 MS.gene29009:CDS
ACAGGAAGGGCAAAGCTTGG+TGG 0.569971 3.2:-66563803 MS.gene29009:CDS
AACCAGACTTGGCCGGCTTG+AGG 0.570870 3.2:+66563686 None:intergenic
TACATTCCTTCTCATGTAGG+TGG 0.572710 3.2:-66564010 MS.gene29009:CDS
GGACGCATATGTCAGTGTAA+AGG 0.573182 3.2:+66564270 None:intergenic
AAATACTCCACTTCCCTCTG+TGG 0.576691 3.2:+66563956 None:intergenic
CGTGGCAAAGGATATGGAGT+AGG 0.578408 3.2:-66564355 MS.gene29009:CDS
AAGGCAAAAGTTGTTTCTCA+CGG 0.578784 3.2:+66563204 None:intergenic
AAATTACGAGGATAAACTAA+AGG 0.581886 3.2:-66562874 MS.gene29009:CDS
TGTGGAGACACTAGAAGGAT+GGG 0.582167 3.2:-66563840 MS.gene29009:CDS
ATGAAGCCTTCTTCAGATGG+AGG 0.584368 3.2:-66562908 MS.gene29009:CDS
TTTACACTGACATATGCGTC+CGG 0.584427 3.2:-66564268 MS.gene29009:CDS
GCCAAGAGTAACAAAGACTC+TGG 0.584834 3.2:-66563260 MS.gene29009:CDS
GAGAGGGTTGTTCCTCAAGC+CGG 0.586703 3.2:-66563698 MS.gene29009:CDS
AGCTCTCAGATGCAACTTGG+TGG 0.589883 3.2:-66564121 MS.gene29009:CDS
GATTTACAAGCTCTACCTCA+AGG 0.593382 3.2:-66562795 MS.gene29009:CDS
TCTACCGCAACAATTCCCAC+AGG 0.593690 3.2:+66563776 None:intergenic
AGGTAGTGAAGATGCTTGGT+TGG 0.593835 3.2:-66562934 MS.gene29009:CDS
GCTGACAGTCGAATCAACTC+TGG 0.595574 3.2:-66563434 MS.gene29009:CDS
CTGAATTCTGATATTGCCAA+AGG 0.597711 3.2:-66562954 MS.gene29009:CDS
AGGGAAGTGGAGTATTTACC+GGG 0.599432 3.2:-66563950 MS.gene29009:CDS
GTATGCCCTTGAATAGGCAC+CGG 0.600171 3.2:+66564300 None:intergenic
CAGTTTGCGAGAATGAAAAG+TGG 0.602541 3.2:+66563605 None:intergenic
GTTGACAAATATTGGCGACT+CGG 0.603072 3.2:-66562823 MS.gene29009:CDS
CCAAAGGTAGTGAAGATGCT+TGG 0.605449 3.2:-66562938 MS.gene29009:CDS
TGAAAGTGGAGAAACAAGAT+GGG 0.609967 3.2:-66564392 MS.gene29009:CDS
TGAAGCCTTCTTCAGATGGA+GGG 0.610858 3.2:-66562907 MS.gene29009:CDS
TGAACTCTTGAGTGGTAGTG+GGG 0.613680 3.2:-66564329 MS.gene29009:CDS
TCAGCTTGATTCTCACGAGA+GGG 0.617471 3.2:-66563714 MS.gene29009:CDS
GTCAGCTTGATTCTCACGAG+AGG 0.617929 3.2:-66563715 MS.gene29009:CDS
AGTGCACCACCTACATGAGA+AGG 0.618027 3.2:+66564004 None:intergenic
TAATCAAAGAAGTTATCGGT+TGG 0.618807 3.2:-66563112 MS.gene29009:CDS
TTGGGATGAGATGCATTCAG+AGG 0.622395 3.2:-66564210 MS.gene29009:CDS
TGGGTTATAGATACCATTCG+TGG 0.622657 3.2:-66564373 MS.gene29009:CDS
GGTAATGCCGTTGAACCGGA+AGG 0.624713 3.2:-66563377 MS.gene29009:CDS
AAGCTTGGTGGAATCCCTGT+GGG 0.625761 3.2:-66563791 MS.gene29009:CDS
TACTCCACTTCCCTCTGTGG+GGG 0.628170 3.2:+66563959 None:intergenic
GTAGGATTTGAACTCTTGAG+TGG 0.630478 3.2:-66564337 MS.gene29009:CDS
AAAAGGGCGGCAAGACCTTG+AGG 0.635397 3.2:+66562780 None:intergenic
AAGGACAGTTGTTACAGGAA+GGG 0.635796 3.2:-66563816 MS.gene29009:CDS
CTACCGCAACAATTCCCACA+GGG 0.636640 3.2:+66563777 None:intergenic
ATACTCCACTTCCCTCTGTG+GGG 0.638691 3.2:+66563958 None:intergenic
AGTTTGCGAGAATGAAAAGT+GGG 0.642694 3.2:+66563606 None:intergenic
TGAATTGTATGCTGACCGAA+CGG 0.643251 3.2:-66563405 MS.gene29009:CDS
CAATAACCCAAGCCCCACCT+CGG 0.644464 3.2:+66563456 None:intergenic
ATAGCTATCTGAGTATACAA+AGG 0.645302 3.2:+66563185 None:intergenic
AACATTGTGAGAGATGCGGC+TGG 0.647787 3.2:-66563026 MS.gene29009:CDS
AATCCCTGTGGGAATTGTTG+CGG 0.660357 3.2:-66563780 MS.gene29009:CDS
GTTCCAGAAATGGCAGCACG+AGG 0.666255 3.2:+66563914 None:intergenic
CCAATGATGGGTGCACTCCG+AGG 0.674486 3.2:-66563473 MS.gene29009:CDS
AAAGCTTGGTGGAATCCCTG+TGG 0.681491 3.2:-66563792 MS.gene29009:CDS
AGACACTAGAAGGATGGGCA+AGG 0.694410 3.2:-66563835 MS.gene29009:CDS
GGATGATTCAGCAAATTACG+AGG 0.707668 3.2:-66562886 MS.gene29009:CDS
GATCAACATTGTGAGAGATG+CGG 0.727414 3.2:-66563030 MS.gene29009:CDS
GGTCAGCATACAATTCAATG+CGG 0.782017 3.2:+66563411 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AAATTACGAGGATAAACTAA+AGG - chr3.2:66564186-66564205 MS.gene29009:CDS 25.0%
! ATTAAACAAAGTTCTTGGTA+GGG - chr3.2:66562908-66562927 MS.gene29009:CDS 25.0%
! ATTGGGATGTATACAAAAAT+GGG + chr3.2:66563572-66563591 None:intergenic 25.0%
! TACTCTTAAGGAAAAACTTT+CGG - chr3.2:66563775-66563794 MS.gene29009:CDS 25.0%
! TCAACAATTGATTACTCTTA+AGG - chr3.2:66563763-66563782 MS.gene29009:CDS 25.0%
!! ATTTAGAACAAGAGAATTGT+TGG - chr3.2:66563721-66563740 MS.gene29009:CDS 25.0%
!!! GTTTTTTACCTTGCTTAAAA+GGG + chr3.2:66564299-66564318 None:intergenic 25.0%
!!! TGTTTTTTACCTTGCTTAAA+AGG + chr3.2:66564300-66564319 None:intergenic 25.0%
AGTTGTTCATCTTACAGTTT+CGG - chr3.2:66562986-66563005 MS.gene29009:CDS 30.0%
ATAGCTATCTGAGTATACAA+AGG + chr3.2:66563878-66563897 None:intergenic 30.0%
ATTGAAATCCAATATCGCTT+GGG + chr3.2:66563423-66563442 None:intergenic 30.0%
CATGAATTAAAGCTTGAAAG+TGG - chr3.2:66562654-66562673 MS.gene29009:intron 30.0%
CATTAAACAAAGTTCTTGGT+AGG - chr3.2:66562907-66562926 MS.gene29009:CDS 30.0%
CATTGGGATGTATACAAAAA+TGG + chr3.2:66563573-66563592 None:intergenic 30.0%
CCTAAAATCATGTCAACAAA+TGG - chr3.2:66562963-66562982 MS.gene29009:CDS 30.0%
GGTGTAATCAAAGAAGTTAT+CGG - chr3.2:66563944-66563963 MS.gene29009:CDS 30.0%
TAATCAAAGAAGTTATCGGT+TGG - chr3.2:66563948-66563967 MS.gene29009:CDS 30.0%
TATTGAAATCCAATATCGCT+TGG + chr3.2:66563424-66563443 None:intergenic 30.0%
TTGCTTCAGTTGACAAATAT+TGG - chr3.2:66564229-66564248 MS.gene29009:CDS 30.0%
TTTGTATACATCCCAATGAT+GGG - chr3.2:66563575-66563594 MS.gene29009:CDS 30.0%
TTTGTTTAATGCCGAAAAAC+CGG + chr3.2:66562898-66562917 None:intergenic 30.0%
! TTTGAATTTTTGTGTGCAGA+AGG - chr3.2:66564404-66564423 MS.gene29009:CDS 30.0%
! TTTTGTATACATCCCAATGA+TGG - chr3.2:66563574-66563593 MS.gene29009:CDS 30.0%
!! CCATTTGTTGACATGATTTT+AGG + chr3.2:66562966-66562985 None:intergenic 30.0%
!!! TATGATTCTTACCGGTTTTT+CGG - chr3.2:66562884-66562903 MS.gene29009:CDS 30.0%
AGTTTGCGAGAATGAAAAGT+GGG + chr3.2:66563457-66563476 None:intergenic 35.0%
CTCTAGATGTTAAAGGAAAG+TGG - chr3.2:66563168-66563187 MS.gene29009:CDS 35.0%
CTGAATTCTGATATTGCCAA+AGG - chr3.2:66564106-66564125 MS.gene29009:CDS 35.0%
CTTCATCATGTGTTGAAACA+TGG - chr3.2:66564370-66564389 MS.gene29009:CDS 35.0%
GAAAAACCGGTAAGAATCAT+AGG + chr3.2:66562885-66562904 None:intergenic 35.0%
GCATGATACTTCCTTAAGAA+TGG - chr3.2:66563913-66563932 MS.gene29009:CDS 35.0%
TCGGCATTAAACAAAGTTCT+TGG - chr3.2:66562903-66562922 MS.gene29009:CDS 35.0%
TGAAAGTGGAGAAACAAGAT+GGG - chr3.2:66562668-66562687 MS.gene29009:intron 35.0%
TGGCAGAAACATATGACAAT+TGG + chr3.2:66564063-66564082 None:intergenic 35.0%
TTCATTGTATGCCCTTGAAT+AGG + chr3.2:66562769-66562788 None:intergenic 35.0%
TTGAAAGTGGAGAAACAAGA+TGG - chr3.2:66562667-66562686 MS.gene29009:intron 35.0%
TTGATCTCAATCATTCCTTC+CGG + chr3.2:66563701-66563720 None:intergenic 35.0%
! AACATCTAGAGTTCCAGAAA+TGG + chr3.2:66563159-66563178 None:intergenic 35.0%
! ACTCACGGTCTTTCTTTTAT+CGG - chr3.2:66563975-66563994 MS.gene29009:CDS 35.0%
! TCTGGAACTCTAGATGTTAA+AGG - chr3.2:66563161-66563180 MS.gene29009:CDS 35.0%
! TTTTACCTTGCTTAAAAGGG+CGG + chr3.2:66564296-66564315 None:intergenic 35.0%
! TTTTGACAAAGACAGCTTTG+TGG - chr3.2:66563202-66563221 MS.gene29009:CDS 35.0%
!! AAGGCAAAAGTTGTTTCTCA+CGG + chr3.2:66563859-66563878 None:intergenic 35.0%
AAATGGAAGAAACGCCTTCA+AGG + chr3.2:66563016-66563035 None:intergenic 40.0%
AAGAATCAGGAAACCAGACT+TGG + chr3.2:66563388-66563407 None:intergenic 40.0%
AAGGACAGTTGTTACAGGAA+GGG - chr3.2:66563244-66563263 MS.gene29009:CDS 40.0%
AATCATTCCTTCCGGTTCAA+CGG + chr3.2:66563693-66563712 None:intergenic 40.0%
ACCAATTCCAACAGTTGTAC+CGG + chr3.2:66562814-66562833 None:intergenic 40.0%
ACCAGAGTCTTTGTTACTCT+TGG + chr3.2:66563804-66563823 None:intergenic 40.0%
AGCTACATTCCTTCTCATGT+AGG - chr3.2:66563047-66563066 MS.gene29009:CDS 40.0%
ATAGATACCATTCGTGGCAA+AGG - chr3.2:66562693-66562712 MS.gene29009:intron 40.0%
CAGTTTGCGAGAATGAAAAG+TGG + chr3.2:66563458-66563477 None:intergenic 40.0%
CCTGAAGAATTCCTTCGAAA+AGG + chr3.2:66563508-66563527 None:intergenic 40.0%
GATCAACATTGTGAGAGATG+CGG - chr3.2:66564030-66564049 MS.gene29009:CDS 40.0%
GATCAGCCTATGATTCTTAC+CGG - chr3.2:66562876-66562895 MS.gene29009:CDS 40.0%
GATTTACAAGCTCTACCTCA+AGG - chr3.2:66564265-66564284 MS.gene29009:CDS 40.0%
GGATGATTCAGCAAATTACG+AGG - chr3.2:66564174-66564193 MS.gene29009:CDS 40.0%
GGTCAGCATACAATTCAATG+CGG + chr3.2:66563652-66563671 None:intergenic 40.0%
GTAGCTAAGCCACTTCAAAA+TGG + chr3.2:66563033-66563052 None:intergenic 40.0%
GTAGGATTTGAACTCTTGAG+TGG - chr3.2:66562723-66562742 MS.gene29009:intron 40.0%
GTTAAAGGAAAGTGGCTGAA+AGG - chr3.2:66563176-66563195 MS.gene29009:CDS 40.0%
GTTGACAAATATTGGCGACT+CGG - chr3.2:66564237-66564256 MS.gene29009:CDS 40.0%
TAAAGGTAATGCCGTTGAAC+CGG - chr3.2:66563679-66563698 MS.gene29009:CDS 40.0%
TACATTCCTTCTCATGTAGG+TGG - chr3.2:66563050-66563069 MS.gene29009:CDS 40.0%
TCCTTAAGAATGGCTGCAAA+GGG - chr3.2:66563923-66563942 MS.gene29009:CDS 40.0%
TGAATTGTATGCTGACCGAA+CGG - chr3.2:66563655-66563674 MS.gene29009:CDS 40.0%
TGGGTTATAGATACCATTCG+TGG - chr3.2:66562687-66562706 MS.gene29009:intron 40.0%
TGGGTTGCTTGTATGTTCTT+AGG + chr3.2:66563553-66563572 None:intergenic 40.0%
TTCCTTAAGAATGGCTGCAA+AGG - chr3.2:66563922-66563941 MS.gene29009:CDS 40.0%
TTGAACTCTTGAGTGGTAGT+GGG - chr3.2:66562730-66562749 MS.gene29009:intron 40.0%
TTTACACTGACATATGCGTC+CGG - chr3.2:66562792-66562811 MS.gene29009:CDS 40.0%
TTTGAACTCTTGAGTGGTAG+TGG - chr3.2:66562729-66562748 MS.gene29009:intron 40.0%
! CACTTTTCATTCTCGCAAAC+TGG - chr3.2:66563456-66563475 MS.gene29009:CDS 40.0%
! CCTTTTCGAAGGAATTCTTC+AGG - chr3.2:66563505-66563524 MS.gene29009:CDS 40.0%
! GAATTGGTGCTTATCTTGCA+AGG - chr3.2:66562826-66562845 MS.gene29009:CDS 40.0%
! GGATCAATGGGCTTTACAAT+GGG + chr3.2:66563083-66563102 None:intergenic 40.0%
! TCTTTTATCGGAGATTGCAC+AGG - chr3.2:66563987-66564006 MS.gene29009:CDS 40.0%
!! GCGTTTCTTCCATTTTGAAG+TGG - chr3.2:66563021-66563040 MS.gene29009:CDS 40.0%
AAATACTCCACTTCCCTCTG+TGG + chr3.2:66563107-66563126 None:intergenic 45.0%
AATACTCCACTTCCCTCTGT+GGG + chr3.2:66563106-66563125 None:intergenic 45.0%
AATCCCTGTGGGAATTGTTG+CGG - chr3.2:66563280-66563299 MS.gene29009:CDS 45.0%
ACCATTCGTGGCAAAGGATA+TGG - chr3.2:66562699-66562718 MS.gene29009:intron 45.0%
ACCCTTTGCAGCCATTCTTA+AGG + chr3.2:66563927-66563946 None:intergenic 45.0%
ACGATGAAGCCTTCTTCAGA+TGG - chr3.2:66564149-66564168 MS.gene29009:CDS 45.0%
AGGTAGTGAAGATGCTTGGT+TGG - chr3.2:66564126-66564145 MS.gene29009:CDS 45.0%
ATCATCCCTCCATCTGAAGA+AGG + chr3.2:66564161-66564180 None:intergenic 45.0%
ATGAAGCCTTCTTCAGATGG+AGG - chr3.2:66564152-66564171 MS.gene29009:CDS 45.0%
CAAGGACAGTTGTTACAGGA+AGG - chr3.2:66563243-66563262 MS.gene29009:CDS 45.0%
CCAAAGGTAGTGAAGATGCT+TGG - chr3.2:66564122-66564141 MS.gene29009:CDS 45.0%
CCAAGCATCTTCACTACCTT+TGG + chr3.2:66564125-66564144 None:intergenic 45.0%
CCATTCTTTGAGCAAGTTCG+TGG + chr3.2:66564083-66564102 None:intergenic 45.0%
CGAGGATTGCATGAATTTCC+CGG + chr3.2:66563131-66563150 None:intergenic 45.0%
GCAGTCTTGGTTGAAGAATC+AGG + chr3.2:66563401-66563420 None:intergenic 45.0%
GCCAAGAGTAACAAAGACTC+TGG - chr3.2:66563800-66563819 MS.gene29009:CDS 45.0%
GGACGCATATGTCAGTGTAA+AGG + chr3.2:66562793-66562812 None:intergenic 45.0%
GTGCTTATCTTGCAAGGCTT+GGG - chr3.2:66562832-66562851 MS.gene29009:CDS 45.0%
TACAGCTCTCAGATGCAACT+TGG - chr3.2:66562936-66562955 MS.gene29009:CDS 45.0%
TCAACTGAAGCAACAGTCTC+TGG + chr3.2:66564222-66564241 None:intergenic 45.0%
TCAGCTTGATTCTCACGAGA+GGG - chr3.2:66563346-66563365 MS.gene29009:CDS 45.0%
TCCATATCCTTTGCCACGAA+TGG + chr3.2:66562703-66562722 None:intergenic 45.0%
TCCGGTACAACTGTTGGAAT+TGG - chr3.2:66562810-66562829 MS.gene29009:CDS 45.0%
TCGTGAGAATCAAGCTGACA+TGG + chr3.2:66563344-66563363 None:intergenic 45.0%
TGAAGCCTTCTTCAGATGGA+GGG - chr3.2:66564153-66564172 MS.gene29009:CDS 45.0%
TGTGGAGACACTAGAAGGAT+GGG - chr3.2:66563220-66563239 MS.gene29009:CDS 45.0%
TTCATTCTCGCAAACTGGAG+AGG - chr3.2:66563461-66563480 MS.gene29009:CDS 45.0%
TTCGAAGGAATTCTTCAGGC+TGG - chr3.2:66563509-66563528 MS.gene29009:CDS 45.0%
TTGGGATGAGATGCATTCAG+AGG - chr3.2:66562850-66562869 MS.gene29009:CDS 45.0%
TTGTGGAGACACTAGAAGGA+TGG - chr3.2:66563219-66563238 MS.gene29009:CDS 45.0%
! AGCTTTGTGGAGACACTAGA+AGG - chr3.2:66563215-66563234 MS.gene29009:CDS 45.0%
! AGGGAAGTGGAGTATTTACC+GGG - chr3.2:66563110-66563129 MS.gene29009:CDS 45.0%
! CCACGAACTTGCTCAAAGAA+TGG - chr3.2:66564080-66564099 MS.gene29009:CDS 45.0%
! GAGGGAAGTGGAGTATTTAC+CGG - chr3.2:66563109-66563128 MS.gene29009:CDS 45.0%
! GGGATCAATGGGCTTTACAA+TGG + chr3.2:66563084-66563103 None:intergenic 45.0%
! TCAGGCTGGTTCAACTATTG+TGG - chr3.2:66563523-66563542 MS.gene29009:CDS 45.0%
! TGAACTCTTGAGTGGTAGTG+GGG - chr3.2:66562731-66562750 MS.gene29009:intron 45.0%
! TTATCGGTTGGCGTAACTCA+CGG - chr3.2:66563960-66563979 MS.gene29009:CDS 45.0%
AACATTGTGAGAGATGCGGC+TGG - chr3.2:66564034-66564053 MS.gene29009:CDS 50.0%
ACAGTTTCGGACGACCTTGA+AGG - chr3.2:66562999-66563018 MS.gene29009:CDS 50.0%
AGACACTAGAAGGATGGGCA+AGG - chr3.2:66563225-66563244 MS.gene29009:CDS 50.0%
AGCTCTCAGATGCAACTTGG+TGG - chr3.2:66562939-66562958 MS.gene29009:CDS 50.0%
AGTGCACCACCTACATGAGA+AGG + chr3.2:66563059-66563078 None:intergenic 50.0%
ATACTCCACTTCCCTCTGTG+GGG + chr3.2:66563105-66563124 None:intergenic 50.0%
ATCAGGAAACCAGACTTGGC+CGG + chr3.2:66563384-66563403 None:intergenic 50.0%
CAAGACTGCCCAAGCGATAT+TGG - chr3.2:66563412-66563431 MS.gene29009:CDS 50.0%
CAATATCGCTTGGGCAGTCT+TGG + chr3.2:66563414-66563433 None:intergenic 50.0%
CATTGCCGGTGCCTATTCAA+GGG - chr3.2:66562755-66562774 MS.gene29009:intron 50.0%
CGGAGATTGCACAGGAGAAT+CGG - chr3.2:66563995-66564014 MS.gene29009:CDS 50.0%
CGGCATTACCTTTAGCCGTT+CGG + chr3.2:66563673-66563692 None:intergenic 50.0%
CGTGGCAAAGGATATGGAGT+AGG - chr3.2:66562705-66562724 MS.gene29009:intron 50.0%
CTACCGCAACAATTCCCACA+GGG + chr3.2:66563286-66563305 None:intergenic 50.0%
GCTGACAGTCGAATCAACTC+TGG - chr3.2:66563626-66563645 MS.gene29009:CDS 50.0%
GGTGCTTATCTTGCAAGGCT+TGG - chr3.2:66562831-66562850 MS.gene29009:CDS 50.0%
GTATGCCCTTGAATAGGCAC+CGG + chr3.2:66562763-66562782 None:intergenic 50.0%
GTCAGCTTGATTCTCACGAG+AGG - chr3.2:66563345-66563364 MS.gene29009:CDS 50.0%
GTTACAGGAAGGGCAAAGCT+TGG - chr3.2:66563254-66563273 MS.gene29009:CDS 50.0%
TATGCGTCCGGTACAACTGT+TGG - chr3.2:66562804-66562823 MS.gene29009:CDS 50.0%
TATGCTGACCGAACGGCTAA+AGG - chr3.2:66563662-66563681 MS.gene29009:CDS 50.0%
TCAAGCTGACATGGATCAGC+AGG + chr3.2:66563335-66563354 None:intergenic 50.0%
TCTACCGCAACAATTCCCAC+AGG + chr3.2:66563287-66563306 None:intergenic 50.0%
TGGGCAAGGACAGTTGTTAC+AGG - chr3.2:66563239-66563258 MS.gene29009:CDS 50.0%
! AAAGCTTGGTGGAATCCCTG+TGG - chr3.2:66563268-66563287 MS.gene29009:CDS 50.0%
! AAGCTTGGTGGAATCCCTGT+GGG - chr3.2:66563269-66563288 MS.gene29009:CDS 50.0%
! AATCCTCGTGCTGCCATTTC+TGG - chr3.2:66563143-66563162 MS.gene29009:CDS 50.0%
! TCTTGCCGCCCTTTTAAGCA+AGG - chr3.2:66564288-66564307 MS.gene29009:CDS 50.0%
AAAAGGGCGGCAAGACCTTG+AGG + chr3.2:66564283-66564302 None:intergenic 55.0%
ACAGGAAGGGCAAAGCTTGG+TGG - chr3.2:66563257-66563276 MS.gene29009:CDS 55.0%
CAATAACCCAAGCCCCACCT+CGG + chr3.2:66563607-66563626 None:intergenic 55.0%
CCATTGCCGGTGCCTATTCA+AGG - chr3.2:66562754-66562773 MS.gene29009:intron 55.0%
CGCAAACTGGAGAGGCTTTG+CGG - chr3.2:66563469-66563488 MS.gene29009:CDS 55.0%
CTCGGAGTGCACCCATCATT+GGG + chr3.2:66563589-66563608 None:intergenic 55.0%
GAGAGGGTTGTTCCTCAAGC+CGG - chr3.2:66563362-66563381 MS.gene29009:CDS 55.0%
GCAAACTGGAGAGGCTTTGC+GGG - chr3.2:66563470-66563489 MS.gene29009:CDS 55.0%
GGTAATGCCGTTGAACCGGA+AGG - chr3.2:66563683-66563702 MS.gene29009:CDS 55.0%
GTTCCAGAAATGGCAGCACG+AGG + chr3.2:66563149-66563168 None:intergenic 55.0%
TACTCCACTTCCCTCTGTGG+GGG + chr3.2:66563104-66563123 None:intergenic 55.0%
TCCCTCTGTGGGGGATCAAT+GGG + chr3.2:66563095-66563114 None:intergenic 55.0%
TTCCCTCTGTGGGGGATCAA+TGG + chr3.2:66563096-66563115 None:intergenic 55.0%
! GGGCAAAGGGACCTTTTCGA+AGG - chr3.2:66563494-66563513 MS.gene29009:CDS 55.0%
!! CCTTGAATAGGCACCGGCAA+TGG + chr3.2:66562757-66562776 None:intergenic 55.0%
AACTGGAGAGGCTTTGCGGG+TGG - chr3.2:66563473-66563492 MS.gene29009:CDS 60.0%
ACTGGAGAGGCTTTGCGGGT+GGG - chr3.2:66563474-66563493 MS.gene29009:CDS 60.0%
AGCCCATTGATCCCCCACAG+AGG - chr3.2:66563090-66563109 MS.gene29009:CDS 60.0%
AGGCTTTGCGGGTGGGCAAA+GGG - chr3.2:66563481-66563500 MS.gene29009:CDS 60.0%
CCTCGGAGTGCACCCATCAT+TGG + chr3.2:66563590-66563609 None:intergenic 60.0%
GCCCATTGATCCCCCACAGA+GGG - chr3.2:66563091-66563110 MS.gene29009:CDS 60.0%
TGATCCCCCACAGAGGGAAG+TGG - chr3.2:66563097-66563116 MS.gene29009:CDS 60.0%
TTCCTCAAGCCGGCCAAGTC+TGG - chr3.2:66563372-66563391 MS.gene29009:CDS 60.0%
! TGATGGGTGCACTCCGAGGT+GGG - chr3.2:66563591-66563610 MS.gene29009:CDS 60.0%
!! AACCAGACTTGGCCGGCTTG+AGG + chr3.2:66563377-66563396 None:intergenic 60.0%
!! AGTGGTAGTGGGGCCATTGC+CGG - chr3.2:66562741-66562760 MS.gene29009:intron 60.0%
!! ATGATGGGTGCACTCCGAGG+TGG - chr3.2:66563590-66563609 MS.gene29009:CDS 60.0%
!! CCAATGATGGGTGCACTCCG+AGG - chr3.2:66563587-66563606 MS.gene29009:CDS 60.0%
GAGGCTTTGCGGGTGGGCAA+AGG - chr3.2:66563480-66563499 MS.gene29009:CDS 65.0%
GATGGGTGCACTCCGAGGTG+GGG - chr3.2:66563592-66563611 MS.gene29009:CDS 65.0%
TGCACTCCGAGGTGGGGCTT+GGG - chr3.2:66563598-66563617 MS.gene29009:CDS 65.0%
GTGCACTCCGAGGTGGGGCT+TGG - chr3.2:66563597-66563616 MS.gene29009:CDS 70.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 66562648 66564434 66562648 ID=MS.gene29009
chr3.2 mRNA 66562648 66564434 66562648 ID=MS.gene29009.t1;Parent=MS.gene29009
chr3.2 exon 66562773 66564434 66562773 ID=MS.gene29009.t1.exon1;Parent=MS.gene29009.t1
chr3.2 CDS 66562773 66564434 66562773 ID=cds.MS.gene29009.t1;Parent=MS.gene29009.t1
chr3.2 exon 66562648 66562659 66562648 ID=MS.gene29009.t1.exon2;Parent=MS.gene29009.t1
chr3.2 CDS 66562648 66562659 66562648 ID=cds.MS.gene29009.t1;Parent=MS.gene29009.t1
Gene Sequence

>MS.gene29009

ATGGCACATGAATTAAAGCTTGAAAGTGGAGAAACAAGATGGGTTATAGATACCATTCGTGGCAAAGGATATGGAGTAGGATTTGAACTCTTGAGTGGTAGTGGGGCCATTGCCGGTGCCTATTCAAGGGCATACAATGAAACCTTTACACTGACATATGCGTCCGGTACAACTGTTGGAATTGGTGCTTATCTTGCAAGGCTTGGGATGAGATGCATTCAGAGGCTTGATCAGCCTATGATTCTTACCGGTTTTTCGGCATTAAACAAAGTTCTTGGTAGGGAAGTGTACAGCTCTCAGATGCAACTTGGTGGACCTAAAATCATGTCAACAAATGGAGTTGTTCATCTTACAGTTTCGGACGACCTTGAAGGCGTTTCTTCCATTTTGAAGTGGCTTAGCTACATTCCTTCTCATGTAGGTGGTGCACTTCCCATTGTAAAGCCCATTGATCCCCCACAGAGGGAAGTGGAGTATTTACCGGGAAATTCATGCAATCCTCGTGCTGCCATTTCTGGAACTCTAGATGTTAAAGGAAAGTGGCTGAAAGGCATTTTTGACAAAGACAGCTTTGTGGAGACACTAGAAGGATGGGCAAGGACAGTTGTTACAGGAAGGGCAAAGCTTGGTGGAATCCCTGTGGGAATTGTTGCGGTAGAAACACAAACAGTAATGCAAATAATACCTGCTGATCCATGTCAGCTTGATTCTCACGAGAGGGTTGTTCCTCAAGCCGGCCAAGTCTGGTTTCCTGATTCTTCAACCAAGACTGCCCAAGCGATATTGGATTTCAATAGAGAAGAGCTCCCACTTTTCATTCTCGCAAACTGGAGAGGCTTTGCGGGTGGGCAAAGGGACCTTTTCGAAGGAATTCTTCAGGCTGGTTCAACTATTGTGGAGAACCTAAGAACATACAAGCAACCCATTTTTGTATACATCCCAATGATGGGTGCACTCCGAGGTGGGGCTTGGGTTATTGCTGACAGTCGAATCAACTCTGGCCGCATTGAATTGTATGCTGACCGAACGGCTAAAGGTAATGCCGTTGAACCGGAAGGAATGATTGAGATCAAATTTAGAACAAGAGAATTGTTGGAGTGTATGAGAAGACTTGATCAACAATTGATTACTCTTAAGGAAAAACTTTCGGAAGCCAAGAGTAACAAAGACTCTGGTACATATGATTCGCTGCAGCAACAGATTAAATTCCGTGAGAAACAACTTTTGCCTTTGTATACTCAGATAGCTATCAAGTTTGTTGAACTGCATGATACTTCCTTAAGAATGGCTGCAAAGGGTGTAATCAAAGAAGTTATCGGTTGGCGTAACTCACGGTCTTTCTTTTATCGGAGATTGCACAGGAGAATCGGTGAGCACTCACTGATCAACATTGTGAGAGATGCGGCTGGTGACCAATTGTCATATGTTTCTGCCACGAACTTGCTCAAAGAATGGTATCTGAATTCTGATATTGCCAAAGGTAGTGAAGATGCTTGGTTGGACGATGAAGCCTTCTTCAGATGGAGGGATGATTCAGCAAATTACGAGGATAAACTAAAGGAATTGCGCGTCCAGAGACTGTTGCTTCAGTTGACAAATATTGGCGACTCGGCTCTAGATTTACAAGCTCTACCTCAAGGTCTTGCCGCCCTTTTAAGCAAGGTAAAAAACACTCTTGTTATTATCTAGTTATTACATCAACTGTTTAAGATTTATCATCTGCTTCATCATGTGTTGAAACATGGAGATATGATTATTTGAATTTTTGTGTGCAGAAGGAAGCATGA

Protein sequence

>MS.gene29009.t1

MAHELKLESGETRWVIDTIRGKGYGVGFELLSGSGAIAGAYSRAYNETFTLTYASGTTVGIGAYLARLGMRCIQRLDQPMILTGFSALNKVLGREVYSSQMQLGGPKIMSTNGVVHLTVSDDLEGVSSILKWLSYIPSHVGGALPIVKPIDPPQREVEYLPGNSCNPRAAISGTLDVKGKWLKGIFDKDSFVETLEGWARTVVTGRAKLGGIPVGIVAVETQTVMQIIPADPCQLDSHERVVPQAGQVWFPDSSTKTAQAILDFNREELPLFILANWRGFAGGQRDLFEGILQAGSTIVENLRTYKQPIFVYIPMMGALRGGAWVIADSRINSGRIELYADRTAKGNAVEPEGMIEIKFRTRELLECMRRLDQQLITLKEKLSEAKSNKDSGTYDSLQQQIKFREKQLLPLYTQIAIKFVELHDTSLRMAAKGVIKEVIGWRNSRSFFYRRLHRRIGEHSLINIVRDAAGDQLSYVSATNLLKEWYLNSDIAKGSEDAWLDDEAFFRWRDDSANYEDKLKELRVQRLLLQLTNIGDSALDLQALPQGLAALLSKKEA