Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29026.t1 | KEH34860.1 | 94.1 | 765 | 37 | 1 | 1 | 765 | 46 | 802 | 0.00E+00 | 1401 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29026.t1 | A0A072V9P2 | 94.1 | 765 | 37 | 1 | 1 | 765 | 46 | 802 | 0.0e+00 | 1401.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049320 | MS.gene29026 | -0.80767 | 4.51E-50 | -1.69E-46 |
| MS.gene05010 | MS.gene29026 | -0.808688 | 2.74E-50 | -1.69E-46 |
| MS.gene050504 | MS.gene29026 | -0.835088 | 2.06E-56 | -1.69E-46 |
| MS.gene050518 | MS.gene29026 | -0.812914 | 3.34E-51 | -1.69E-46 |
| MS.gene050612 | MS.gene29026 | -0.820254 | 7.56E-53 | -1.69E-46 |
| MS.gene050868 | MS.gene29026 | -0.807483 | 4.94E-50 | -1.69E-46 |
| MS.gene050871 | MS.gene29026 | -0.806146 | 9.48E-50 | -1.69E-46 |
| MS.gene050883 | MS.gene29026 | 0.800889 | 1.17E-48 | -1.69E-46 |
| MS.gene050986 | MS.gene29026 | -0.812987 | 3.21E-51 | -1.69E-46 |
| MS.gene051127 | MS.gene29026 | 0.807619 | 4.63E-50 | -1.69E-46 |
| MS.gene05141 | MS.gene29026 | 0.806526 | 7.88E-50 | -1.69E-46 |
| MS.gene051946 | MS.gene29026 | 0.81773 | 2.83E-52 | -1.69E-46 |
| MS.gene052802 | MS.gene29026 | 0.801028 | 1.09E-48 | -1.69E-46 |
| MS.gene053561 | MS.gene29026 | 0.81086 | 9.34E-51 | -1.69E-46 |
| MS.gene055502 | MS.gene29026 | -0.813205 | 2.88E-51 | -1.69E-46 |
| MS.gene056311 | MS.gene29026 | 0.804522 | 2.07E-49 | -1.69E-46 |
| MS.gene056510 | MS.gene29026 | -0.825249 | 5.20E-54 | -1.69E-46 |
| MS.gene056577 | MS.gene29026 | 0.803472 | 3.43E-49 | -1.69E-46 |
| MS.gene057014 | MS.gene29026 | 0.820526 | 6.55E-53 | -1.69E-46 |
| MS.gene058171 | MS.gene29026 | 0.802389 | 5.74E-49 | -1.69E-46 |
| MS.gene058175 | MS.gene29026 | 0.808427 | 3.11E-50 | -1.69E-46 |
| MS.gene058773 | MS.gene29026 | -0.805047 | 1.61E-49 | -1.69E-46 |
| MS.gene05884 | MS.gene29026 | 0.824083 | 9.78E-54 | -1.69E-46 |
| MS.gene059022 | MS.gene29026 | -0.823677 | 1.22E-53 | -1.69E-46 |
| MS.gene059865 | MS.gene29026 | -0.814332 | 1.63E-51 | -1.69E-46 |
| MS.gene059943 | MS.gene29026 | 0.800226 | 1.59E-48 | -1.69E-46 |
| MS.gene06077 | MS.gene29026 | -0.807574 | 4.73E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29026.t1 | MTR_3g073590 | 96.209 | 765 | 21 | 1 | 1 | 765 | 46 | 802 | 0.0 | 1503 |
| MS.gene29026.t1 | MTR_5g061340 | 69.019 | 581 | 154 | 3 | 185 | 764 | 419 | 974 | 0.0 | 834 |
| MS.gene29026.t1 | MTR_1g035690 | 41.139 | 474 | 271 | 6 | 296 | 764 | 129 | 599 | 1.97e-121 | 377 |
| MS.gene29026.t1 | MTR_8g033290 | 41.314 | 472 | 272 | 5 | 295 | 764 | 154 | 622 | 3.42e-119 | 372 |
| MS.gene29026.t1 | MTR_8g078760 | 30.734 | 218 | 140 | 3 | 556 | 765 | 404 | 618 | 1.33e-22 | 103 |
| MS.gene29026.t1 | MTR_5g018820 | 36.000 | 150 | 89 | 1 | 553 | 695 | 398 | 547 | 1.28e-20 | 97.1 |
| MS.gene29026.t1 | MTR_8g079840 | 34.682 | 173 | 101 | 5 | 556 | 722 | 379 | 545 | 3.82e-19 | 92.4 |
| MS.gene29026.t1 | MTR_3g101340 | 32.184 | 174 | 104 | 3 | 556 | 722 | 321 | 487 | 1.39e-18 | 90.5 |
| MS.gene29026.t1 | MTR_3g101340 | 32.184 | 174 | 104 | 3 | 556 | 722 | 347 | 513 | 1.64e-18 | 90.1 |
| MS.gene29026.t1 | MTR_3g101340 | 30.220 | 182 | 105 | 3 | 556 | 722 | 346 | 520 | 2.91e-18 | 89.7 |
| MS.gene29026.t1 | MTR_5g066810 | 68.519 | 54 | 17 | 0 | 711 | 764 | 10 | 63 | 2.92e-18 | 79.7 |
| MS.gene29026.t1 | MTR_4g068920 | 34.211 | 152 | 93 | 2 | 552 | 696 | 407 | 558 | 1.10e-17 | 87.8 |
| MS.gene29026.t1 | MTR_5g017790 | 34.118 | 170 | 100 | 5 | 559 | 722 | 331 | 494 | 2.85e-17 | 86.3 |
| MS.gene29026.t1 | MTR_5g017790 | 30.693 | 202 | 127 | 6 | 528 | 722 | 287 | 482 | 2.99e-17 | 86.3 |
| MS.gene29026.t1 | MTR_1g021040 | 31.548 | 168 | 106 | 3 | 559 | 722 | 333 | 495 | 4.21e-17 | 85.9 |
| MS.gene29026.t1 | MTR_8g078760 | 36.800 | 125 | 72 | 1 | 556 | 673 | 404 | 528 | 2.59e-16 | 83.2 |
| MS.gene29026.t1 | MTR_5g012790 | 31.765 | 170 | 101 | 3 | 543 | 699 | 345 | 512 | 1.02e-15 | 81.6 |
| MS.gene29026.t1 | MTR_5g079910 | 30.729 | 192 | 125 | 4 | 552 | 740 | 289 | 475 | 1.11e-13 | 74.7 |
| MS.gene29026.t1 | MTR_4g058015 | 27.706 | 231 | 145 | 7 | 552 | 765 | 462 | 687 | 3.93e-13 | 73.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29026.t1 | AT4G08550 | 62.522 | 571 | 192 | 4 | 196 | 764 | 140 | 690 | 0.0 | 720 |
| MS.gene29026.t1 | AT4G08550 | 55.692 | 571 | 177 | 6 | 196 | 764 | 140 | 636 | 0.0 | 607 |
| MS.gene29026.t1 | AT3G11920 | 39.413 | 477 | 280 | 5 | 295 | 764 | 155 | 629 | 6.98e-116 | 364 |
| MS.gene29026.t1 | AT5G66600 | 33.721 | 172 | 105 | 2 | 556 | 721 | 391 | 559 | 1.09e-23 | 107 |
| MS.gene29026.t1 | AT5G66600 | 33.721 | 172 | 105 | 2 | 556 | 721 | 391 | 559 | 1.09e-23 | 107 |
| MS.gene29026.t1 | AT5G66600 | 33.721 | 172 | 105 | 2 | 556 | 721 | 391 | 559 | 1.09e-23 | 107 |
| MS.gene29026.t1 | AT5G66600 | 33.721 | 172 | 105 | 2 | 556 | 721 | 391 | 559 | 1.09e-23 | 107 |
| MS.gene29026.t1 | AT5G66600 | 33.721 | 172 | 105 | 2 | 556 | 721 | 391 | 559 | 1.09e-23 | 107 |
| MS.gene29026.t1 | AT5G66600 | 33.721 | 172 | 105 | 2 | 556 | 721 | 371 | 539 | 1.09e-23 | 106 |
| MS.gene29026.t1 | AT5G66600 | 33.721 | 172 | 105 | 2 | 556 | 721 | 337 | 505 | 1.16e-23 | 106 |
| MS.gene29026.t1 | AT1G16750 | 30.081 | 246 | 134 | 7 | 545 | 765 | 293 | 525 | 6.44e-23 | 103 |
| MS.gene29026.t1 | AT3G13000 | 31.280 | 211 | 124 | 7 | 545 | 743 | 314 | 515 | 7.54e-22 | 100 |
| MS.gene29026.t1 | AT3G13000 | 31.280 | 211 | 124 | 7 | 545 | 743 | 343 | 544 | 9.45e-22 | 100 |
| MS.gene29026.t1 | AT3G13000 | 31.280 | 211 | 124 | 7 | 545 | 743 | 343 | 544 | 9.45e-22 | 100 |
| MS.gene29026.t1 | AT2G23700 | 30.594 | 219 | 140 | 5 | 556 | 765 | 484 | 699 | 6.58e-20 | 95.1 |
| MS.gene29026.t1 | AT5G66600 | 38.710 | 124 | 70 | 1 | 556 | 673 | 391 | 514 | 1.70e-18 | 90.1 |
| MS.gene29026.t1 | AT5G66600 | 38.710 | 124 | 70 | 1 | 556 | 673 | 391 | 514 | 1.70e-18 | 90.1 |
| MS.gene29026.t1 | AT5G66600 | 38.710 | 124 | 70 | 1 | 556 | 673 | 391 | 514 | 1.70e-18 | 90.1 |
| MS.gene29026.t1 | AT5G66600 | 38.710 | 124 | 70 | 1 | 556 | 673 | 391 | 514 | 1.70e-18 | 90.1 |
| MS.gene29026.t1 | AT4G37080 | 32.948 | 173 | 104 | 5 | 556 | 722 | 392 | 558 | 3.14e-18 | 89.7 |
| MS.gene29026.t1 | AT4G37080 | 32.948 | 173 | 104 | 5 | 556 | 722 | 392 | 558 | 3.14e-18 | 89.7 |
| MS.gene29026.t1 | AT4G37080 | 32.948 | 173 | 104 | 5 | 556 | 722 | 379 | 545 | 3.43e-18 | 89.4 |
| MS.gene29026.t1 | AT5G42690 | 32.558 | 172 | 106 | 4 | 555 | 722 | 321 | 486 | 1.20e-17 | 87.4 |
| MS.gene29026.t1 | AT5G42690 | 32.558 | 172 | 106 | 4 | 555 | 722 | 322 | 487 | 1.21e-17 | 87.4 |
| MS.gene29026.t1 | AT5G42690 | 32.558 | 172 | 106 | 4 | 555 | 722 | 322 | 487 | 1.21e-17 | 87.4 |
| MS.gene29026.t1 | AT5G42690 | 32.558 | 172 | 106 | 4 | 555 | 722 | 295 | 460 | 1.23e-17 | 87.4 |
| MS.gene29026.t1 | AT5G42690 | 32.558 | 172 | 106 | 4 | 555 | 722 | 270 | 435 | 1.32e-17 | 87.0 |
| MS.gene29026.t1 | AT5G47380 | 34.682 | 173 | 96 | 4 | 553 | 713 | 359 | 526 | 2.67e-17 | 86.7 |
| MS.gene29026.t1 | AT5G47380 | 33.898 | 177 | 100 | 4 | 553 | 717 | 359 | 530 | 2.85e-17 | 86.7 |
| MS.gene29026.t1 | AT5G47380 | 34.682 | 173 | 96 | 4 | 553 | 713 | 303 | 470 | 3.28e-17 | 86.3 |
| MS.gene29026.t1 | AT3G18900 | 31.098 | 164 | 105 | 3 | 540 | 695 | 214 | 377 | 5.11e-16 | 82.0 |
| MS.gene29026.t1 | AT3G18900 | 31.098 | 164 | 105 | 3 | 540 | 695 | 214 | 377 | 5.11e-16 | 82.0 |
| MS.gene29026.t1 | AT3G18900 | 31.098 | 164 | 105 | 3 | 540 | 695 | 295 | 458 | 6.54e-16 | 82.0 |
| MS.gene29026.t1 | AT3G18900 | 31.098 | 164 | 105 | 3 | 540 | 695 | 290 | 453 | 7.27e-16 | 81.6 |
| MS.gene29026.t1 | AT1G21060 | 26.957 | 230 | 153 | 6 | 545 | 765 | 266 | 489 | 6.10e-14 | 75.5 |
| MS.gene29026.t1 | AT1G21060 | 26.957 | 230 | 153 | 6 | 545 | 765 | 278 | 501 | 7.46e-14 | 75.5 |
| MS.gene29026.t1 | AT1G76620 | 33.553 | 152 | 86 | 4 | 556 | 696 | 299 | 446 | 2.18e-13 | 73.9 |
| MS.gene29026.t1 | AT2G39690 | 30.952 | 168 | 110 | 3 | 556 | 721 | 307 | 470 | 6.07e-13 | 72.4 |
| MS.gene29026.t1 | AT2G39690 | 30.952 | 168 | 110 | 3 | 556 | 721 | 281 | 444 | 7.76e-13 | 72.0 |
| MS.gene29026.t1 | AT2G39690 | 30.952 | 168 | 110 | 3 | 556 | 721 | 200 | 363 | 8.02e-13 | 71.6 |
| MS.gene29026.t1 | AT2G39690 | 30.357 | 168 | 110 | 3 | 556 | 721 | 307 | 469 | 1.40e-12 | 71.2 |
| MS.gene29026.t1 | AT2G39690 | 30.357 | 168 | 110 | 3 | 556 | 721 | 281 | 443 | 1.82e-12 | 70.9 |
| MS.gene29026.t1 | AT1G43020 | 32.667 | 150 | 87 | 5 | 556 | 695 | 218 | 363 | 2.65e-12 | 70.1 |
| MS.gene29026.t1 | AT3G18900 | 30.986 | 142 | 90 | 3 | 540 | 673 | 295 | 436 | 2.88e-12 | 70.1 |
| MS.gene29026.t1 | AT5G47380 | 35.338 | 133 | 71 | 3 | 553 | 673 | 359 | 488 | 4.53e-12 | 69.7 |
| MS.gene29026.t1 | AT5G47380 | 35.878 | 131 | 69 | 3 | 553 | 671 | 359 | 486 | 5.08e-12 | 69.7 |
| MS.gene29026.t1 | AT1G16750 | 37.374 | 99 | 59 | 1 | 545 | 640 | 293 | 391 | 5.53e-12 | 68.9 |
Find 172 sgRNAs with CRISPR-Local
Find 231 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGACTTCTTAATATAATTTA+AGG | 0.073218 | 3.4:-72162644 | None:intergenic |
| TGCATCAAGGCTGAGATTTC+TGG | 0.101988 | 3.4:+72164009 | MS.gene29026:CDS |
| TGCGATAGGCTTTGGATTAA+TGG | 0.164279 | 3.4:-72163981 | None:intergenic |
| TTGGAAAGAAGGAAATTATT+TGG | 0.198959 | 3.4:+72164379 | MS.gene29026:CDS |
| TTCAATGTCACTGGAGATTC+TGG | 0.202694 | 3.4:+72162085 | MS.gene29026:CDS |
| TTTAGGTATAGCATAGATTT+TGG | 0.208784 | 3.4:+72165159 | MS.gene29026:intron |
| TCCAAGTGAGGACAACAATT+TGG | 0.230260 | 3.4:+72162321 | MS.gene29026:CDS |
| CATCCATGCAATCTTAATAT+TGG | 0.235219 | 3.4:+72164339 | MS.gene29026:CDS |
| CTTATCAGAAGATCAATATT+TGG | 0.236747 | 3.4:+72163188 | MS.gene29026:CDS |
| AATCCAATATTTCAACTCTT+TGG | 0.237090 | 3.4:-72164264 | None:intergenic |
| ACTATGCTGCGCCGCCTTTC+TGG | 0.241084 | 3.4:+72162499 | MS.gene29026:CDS |
| TCCCTTTCAGCTATTCAAAA+TGG | 0.243224 | 3.4:+72164436 | MS.gene29026:CDS |
| AACTGACTCAGCAATATTAT+TGG | 0.243565 | 3.4:+72165230 | MS.gene29026:CDS |
| GGAGAGTTCAAATATGTTAT+AGG | 0.244778 | 3.4:+72164400 | MS.gene29026:CDS |
| TTGGTATGTGGCACCCGATC+TGG | 0.254719 | 3.4:+72164694 | MS.gene29026:CDS |
| AATGGCTTCTTAAGGTTATA+TGG | 0.266212 | 3.4:-72164484 | None:intergenic |
| TGCAAAAGATAAACGCTTAA+AGG | 0.270667 | 3.4:+72164510 | MS.gene29026:CDS |
| GAGCACATCTACCCGTAAAT+TGG | 0.283924 | 3.4:+72162390 | MS.gene29026:CDS |
| CCTGATCTCCATCCAATTTA+CGG | 0.285251 | 3.4:-72162402 | None:intergenic |
| CTTCTTTCCAATGCTCCATC+TGG | 0.285483 | 3.4:-72164367 | None:intergenic |
| CAGTATAATCCTTCCTTTCA+TGG | 0.286548 | 3.4:-72162737 | None:intergenic |
| ATCCTTCCTTTCATGGCTAT+TGG | 0.292169 | 3.4:-72162730 | None:intergenic |
| AATTTGGACCCTGTATTTGA+TGG | 0.308860 | 3.4:+72162337 | MS.gene29026:CDS |
| GCTCCAAAGAGTTGAAATAT+TGG | 0.318765 | 3.4:+72164261 | MS.gene29026:CDS |
| ATATCATCCTCTCCAGAAAA+AGG | 0.320824 | 3.4:-72163033 | None:intergenic |
| GCAATTTCTGCGATAGGCTT+TGG | 0.331252 | 3.4:-72163989 | None:intergenic |
| TTCATCAACTGCCCCACTAA+TGG | 0.342890 | 3.4:-72163058 | None:intergenic |
| ATTTGATGGAACCGAGGTTC+CGG | 0.359300 | 3.4:+72162351 | MS.gene29026:CDS |
| GCTTGCCTCTTCTGAATTGA+AGG | 0.361482 | 3.4:+72165257 | MS.gene29026:CDS |
| ACGGAGTTGGAGAAGATATC+TGG | 0.363743 | 3.4:+72162865 | MS.gene29026:CDS |
| CTAGATGAAATGCACAGATA+TGG | 0.373544 | 3.4:+72162220 | MS.gene29026:CDS |
| ATCCATGCAATCTTAATATT+GGG | 0.374358 | 3.4:+72164340 | MS.gene29026:CDS |
| GACTTCTTAATATAATTTAA+GGG | 0.376502 | 3.4:-72162643 | None:intergenic |
| TAACATTGTGACATCACAAT+TGG | 0.376676 | 3.4:-72163935 | None:intergenic |
| TTTGATGGAACCGAGGTTCC+GGG | 0.376989 | 3.4:+72162352 | MS.gene29026:CDS |
| AGATTCTTGACACCCTAGTT+TGG | 0.383221 | 3.4:-72162764 | None:intergenic |
| TCCAAATTGTTGTCCTCACT+TGG | 0.389670 | 3.4:-72162322 | None:intergenic |
| TGCCATTCAGATTGAAGATC+AGG | 0.390522 | 3.4:+72161931 | MS.gene29026:CDS |
| ATGTCAGTAAGATTCTTAAA+TGG | 0.394125 | 3.4:+72164830 | MS.gene29026:CDS |
| TGGTATGTGGCACCCGATCT+GGG | 0.395261 | 3.4:+72164695 | MS.gene29026:CDS |
| AGAAGTTAATGAAGCCAAAC+TGG | 0.400357 | 3.4:+72162585 | MS.gene29026:CDS |
| GAGGATGATATTTCCATTAG+TGG | 0.406602 | 3.4:+72163045 | MS.gene29026:CDS |
| CAGATATGGACTGGATGATT+TGG | 0.409841 | 3.4:+72162234 | MS.gene29026:CDS |
| AGTGAAAATTTATTTGAAGA+TGG | 0.410745 | 3.4:+72163881 | MS.gene29026:intron |
| CCCTAAGTTTGACAGTAAAC+TGG | 0.417217 | 3.4:+72161991 | MS.gene29026:CDS |
| GTCAAGAATCTAGAATATTT+AGG | 0.417224 | 3.4:+72162776 | MS.gene29026:CDS |
| TCCAACTCCGTCTTTCTACC+AGG | 0.418763 | 3.4:-72162853 | None:intergenic |
| TAGTGGGGCAGTTGATGAAT+TGG | 0.419111 | 3.4:+72163062 | MS.gene29026:CDS |
| TTGCACCGAATGGCTTCTTA+AGG | 0.419522 | 3.4:-72164492 | None:intergenic |
| TGGCTTCTCAGAAACCAGTT+TGG | 0.424844 | 3.4:-72162599 | None:intergenic |
| AGAGTATTCTGGTGGTGATA+AGG | 0.425577 | 3.4:+72162153 | MS.gene29026:CDS |
| TTCATGGCTATTGGTGATGA+TGG | 0.432688 | 3.4:-72162721 | None:intergenic |
| TCCAGTTTACTGTCAAACTT+AGG | 0.433560 | 3.4:-72161992 | None:intergenic |
| ACCTCGGTTCCATCAAATAC+AGG | 0.434676 | 3.4:-72162346 | None:intergenic |
| ACCAAAGCAAAATGAATCAT+AGG | 0.439045 | 3.4:-72164676 | None:intergenic |
| CTGATCTCCATCCAATTTAC+GGG | 0.439424 | 3.4:-72162401 | None:intergenic |
| TCACGAGACCTCCACTTCTC+AGG | 0.439974 | 3.4:-72164783 | None:intergenic |
| TTCCAAGCAGATTTCTCCAC+TGG | 0.442084 | 3.4:-72162619 | None:intergenic |
| ATTATACTGTACACCAAACT+AGG | 0.448111 | 3.4:+72162751 | MS.gene29026:CDS |
| AATGTTGGTAAAGAGTATTC+TGG | 0.448696 | 3.4:+72162142 | MS.gene29026:CDS |
| GCCCTTCGATGCTATTCTCC+TGG | 0.451401 | 3.4:+72164721 | MS.gene29026:CDS |
| CCGTAAATTGGATGGAGATC+AGG | 0.452393 | 3.4:+72162402 | MS.gene29026:CDS |
| GCAAAATGAATCATAGGCTC+GGG | 0.452440 | 3.4:-72164670 | None:intergenic |
| CAGATGGAGCATTGGAAAGA+AGG | 0.457598 | 3.4:+72164368 | MS.gene29026:CDS |
| TTCCGGGGATGCAAGTTAAC+CGG | 0.460048 | 3.4:+72162368 | MS.gene29026:CDS |
| TTAATGGTAATAATACCCTT+TGG | 0.464994 | 3.4:-72163965 | None:intergenic |
| TTCAATGAAATATGTATTGG+AGG | 0.465319 | 3.4:+72162913 | MS.gene29026:CDS |
| TGATACATCGGACGTGATAA+CGG | 0.466719 | 3.4:+72162015 | MS.gene29026:CDS |
| AGACATGGAATCCACAGATA+TGG | 0.468766 | 3.4:+72162279 | MS.gene29026:CDS |
| TCGAAGGGCAGGCCCAGATC+GGG | 0.471322 | 3.4:-72164707 | None:intergenic |
| CTCCGGTTAACTTGCATCCC+CGG | 0.471561 | 3.4:-72162370 | None:intergenic |
| CAATATTAAGATTGCATGGA+TGG | 0.471965 | 3.4:-72164338 | None:intergenic |
| TTTAGCCTTAAAATTTATGT+TGG | 0.474983 | 3.4:-72162182 | None:intergenic |
| ATCGAAGGGCAGGCCCAGAT+CGG | 0.479385 | 3.4:-72164708 | None:intergenic |
| ATCCTGATCTTCAATCTGAA+TGG | 0.479600 | 3.4:-72161933 | None:intergenic |
| CTTGATGCAATTTCTGCGAT+AGG | 0.479925 | 3.4:-72163995 | None:intergenic |
| AGGTCTCGTGATTGATTTGA+CGG | 0.480468 | 3.4:+72164795 | MS.gene29026:CDS |
| AGGATGATATTTCCATTAGT+GGG | 0.486028 | 3.4:+72163046 | MS.gene29026:CDS |
| AGCAAAATGAATCATAGGCT+CGG | 0.489457 | 3.4:-72164671 | None:intergenic |
| TGAATCATAGGCTCGGGGTA+AGG | 0.490288 | 3.4:-72164664 | None:intergenic |
| TAGTTCAAACCCCAGTCATA+AGG | 0.490858 | 3.4:-72165291 | None:intergenic |
| TTGCAGCTTCTCAACCGCTT+GGG | 0.498671 | 3.4:-72161897 | None:intergenic |
| TTGCATGGAAGTGAGGAGTT+CGG | 0.506332 | 3.4:+72164091 | MS.gene29026:CDS |
| CATGGAAGATCAGCATTTGT+TGG | 0.507056 | 3.4:+72161856 | None:intergenic |
| AATAATATTGCTGAGTCAGT+TGG | 0.507212 | 3.4:-72165228 | None:intergenic |
| GAAGCCTATGCTATTGAAGA+TGG | 0.508503 | 3.4:+72164046 | MS.gene29026:CDS |
| CAGTCCAGGTGTGGTTGAGA+AGG | 0.509358 | 3.4:+72162426 | MS.gene29026:CDS |
| GAATCATAGGCTCGGGGTAA+GGG | 0.509661 | 3.4:-72164663 | None:intergenic |
| CTTGCAGCTTCTCAACCGCT+TGG | 0.510135 | 3.4:-72161898 | None:intergenic |
| GGAGAATAGCATCGAAGGGC+AGG | 0.510556 | 3.4:-72164718 | None:intergenic |
| CAGAGGGATTCAGTAACAAA+TGG | 0.513968 | 3.4:+72162697 | MS.gene29026:CDS |
| CAACAAATGCTGATCTTCCA+TGG | 0.517186 | 3.4:-72161855 | None:intergenic |
| ACTGCCTTCTCAACCACACC+TGG | 0.521661 | 3.4:-72162430 | None:intergenic |
| TTACATATCAGCCTTATGAC+TGG | 0.523585 | 3.4:+72165280 | MS.gene29026:CDS |
| CCAGTTTACTGTCAAACTTA+GGG | 0.524030 | 3.4:-72161991 | None:intergenic |
| TATTCAAAATGGAATATTGA+GGG | 0.525670 | 3.4:+72164447 | MS.gene29026:CDS |
| TAAGGTTATATGGAGGTCGT+TGG | 0.529342 | 3.4:-72164474 | None:intergenic |
| TGGAAAACAAAACTGATCAG+AGG | 0.529835 | 3.4:+72162680 | MS.gene29026:CDS |
| TCTCAGAATGTTGTTCATGA+TGG | 0.530719 | 3.4:+72161968 | MS.gene29026:CDS |
| TACATATCAGCCTTATGACT+GGG | 0.530867 | 3.4:+72165281 | MS.gene29026:CDS |
| CAGAAGATCAATATTTGGAA+AGG | 0.531565 | 3.4:+72163193 | MS.gene29026:CDS |
| TCAGCATTTGTTGGAGACAA+AGG | 0.531880 | 3.4:+72161865 | MS.gene29026:CDS |
| GACCCAATATTAAGATTGCA+TGG | 0.533239 | 3.4:-72164342 | None:intergenic |
| TCAATTCAGAAGAGGCAAGC+AGG | 0.533585 | 3.4:-72165254 | None:intergenic |
| AACTTGCATCCCCGGAACCT+CGG | 0.534932 | 3.4:-72162362 | None:intergenic |
| AGAAAGGCGGCGCAGCATAG+TGG | 0.536077 | 3.4:-72162497 | None:intergenic |
| CACCAATAGCCATGAAAGGA+AGG | 0.542926 | 3.4:+72162728 | MS.gene29026:CDS |
| CGCAATTTCCTGAGAAGTGG+AGG | 0.544921 | 3.4:+72164775 | MS.gene29026:CDS |
| GATTGAAGATCAGGATAAAG+AGG | 0.545716 | 3.4:+72161940 | MS.gene29026:CDS |
| ATTTCAGTTTCAGAATTGAT+CGG | 0.549208 | 3.4:-72162115 | None:intergenic |
| GGTGATGGGGTTTCAAATAA+CGG | 0.551236 | 3.4:-72163009 | None:intergenic |
| ATCCACAGATATGGATCAGA+AGG | 0.552063 | 3.4:+72162288 | MS.gene29026:CDS |
| AGCCAGTGGAGAAATCTGCT+TGG | 0.553500 | 3.4:+72162617 | MS.gene29026:CDS |
| TTCCAGGAGAATAGCATCGA+AGG | 0.554025 | 3.4:-72164723 | None:intergenic |
| GTGATAACGGATGACAATGA+TGG | 0.554075 | 3.4:+72162028 | MS.gene29026:CDS |
| CAATGTTACAATATTCCAAA+GGG | 0.554541 | 3.4:+72163950 | MS.gene29026:CDS |
| AAACAACTTGGGAACAGAAG+TGG | 0.555017 | 3.4:-72162890 | None:intergenic |
| GATGGAGATCAGGACAGTCC+AGG | 0.555381 | 3.4:+72162412 | MS.gene29026:CDS |
| GTATTCTGGTGGTGATAAGG+TGG | 0.556223 | 3.4:+72162156 | MS.gene29026:CDS |
| TTGAATAGCTGAAAGGGAGT+AGG | 0.559780 | 3.4:-72164431 | None:intergenic |
| GAAGTCATTTGATGTTGATG+TGG | 0.561143 | 3.4:+72162660 | MS.gene29026:CDS |
| TATAACCTTAAGAAGCCATT+CGG | 0.563687 | 3.4:+72164487 | MS.gene29026:CDS |
| CCCTGGTAGAAAGACGGAGT+TGG | 0.563695 | 3.4:+72162852 | MS.gene29026:CDS |
| TTAATATTGGGTCATCCAGA+TGG | 0.565815 | 3.4:+72164352 | MS.gene29026:CDS |
| ACAGATTGTACAAAATGCGC+AGG | 0.567629 | 3.4:+72163127 | MS.gene29026:CDS |
| TGCCTTCTGATCCATATCTG+TGG | 0.567944 | 3.4:-72162290 | None:intergenic |
| GAAACTGAAATTGATAATGT+TGG | 0.569198 | 3.4:+72162127 | MS.gene29026:CDS |
| ATTTACGGGTAGATGTGCTC+CGG | 0.569546 | 3.4:-72162387 | None:intergenic |
| TACAAGTTTGCATGGAAGTG+AGG | 0.571856 | 3.4:+72164084 | MS.gene29026:CDS |
| ATGGAAGTGAGGAGTTCGGC+AGG | 0.573905 | 3.4:+72164095 | MS.gene29026:CDS |
| AATAGCTGAAAGGGAGTAGG+TGG | 0.575549 | 3.4:-72164428 | None:intergenic |
| ACTCGCAATTTCCTGAGAAG+TGG | 0.578546 | 3.4:+72164772 | MS.gene29026:CDS |
| TTCTGGTGGTGATAAGGTGG+AGG | 0.580331 | 3.4:+72162159 | MS.gene29026:CDS |
| TCCAGGAGAATAGCATCGAA+GGG | 0.585737 | 3.4:-72164722 | None:intergenic |
| CTATTCAAAATGGAATATTG+AGG | 0.586041 | 3.4:+72164446 | MS.gene29026:CDS |
| ACAATGTTACAATATTCCAA+AGG | 0.587793 | 3.4:+72163949 | MS.gene29026:CDS |
| TGAAATGCACAGATATGGAC+TGG | 0.589172 | 3.4:+72162225 | MS.gene29026:CDS |
| TGTAACCTTCAATTCAGAAG+AGG | 0.594840 | 3.4:-72165262 | None:intergenic |
| GGAAAACAAAACTGATCAGA+GGG | 0.600988 | 3.4:+72162681 | MS.gene29026:CDS |
| GTTGATTATACAAGTTTGCA+TGG | 0.601412 | 3.4:+72164076 | MS.gene29026:CDS |
| TCAATATTTGGAAAGGCTAG+AGG | 0.606043 | 3.4:+72163200 | MS.gene29026:CDS |
| TCATCACCAATAGCCATGAA+AGG | 0.614646 | 3.4:+72162724 | MS.gene29026:CDS |
| CCAACTCCGTCTTTCTACCA+GGG | 0.616219 | 3.4:-72162852 | None:intergenic |
| ACATCTACCCGTAAATTGGA+TGG | 0.616547 | 3.4:+72162394 | MS.gene29026:CDS |
| ACATATCAGCCTTATGACTG+GGG | 0.619604 | 3.4:+72165282 | MS.gene29026:CDS |
| GAGTTCAAATATGTTATAGG+TGG | 0.620548 | 3.4:+72164403 | MS.gene29026:CDS |
| GGGTCATCCAGATGGAGCAT+TGG | 0.621494 | 3.4:+72164360 | MS.gene29026:CDS |
| TTGATGGAACCGAGGTTCCG+GGG | 0.624334 | 3.4:+72162353 | MS.gene29026:CDS |
| GGCAGATGAAATTCCAAGTG+AGG | 0.627307 | 3.4:+72162309 | MS.gene29026:CDS |
| CCCTGTATTTGATGGAACCG+AGG | 0.628835 | 3.4:+72162345 | MS.gene29026:CDS |
| TTATACTGTACACCAAACTA+GGG | 0.629182 | 3.4:+72162752 | MS.gene29026:CDS |
| GCATCCATCTTCAATAGCAT+AGG | 0.630339 | 3.4:-72164050 | None:intergenic |
| CTATCGCAGAAATTGCATCA+AGG | 0.631626 | 3.4:+72163996 | MS.gene29026:CDS |
| GGATGATATTTCCATTAGTG+GGG | 0.635196 | 3.4:+72163047 | MS.gene29026:CDS |
| CAGTAAACTGGATGATACAT+CGG | 0.636432 | 3.4:+72162003 | MS.gene29026:CDS |
| TGTATACCCTGGTAGAAAGA+CGG | 0.637748 | 3.4:+72162846 | MS.gene29026:CDS |
| ATTCAAAATGGAATATTGAG+GGG | 0.652429 | 3.4:+72164448 | MS.gene29026:CDS |
| CCTCGGTTCCATCAAATACA+GGG | 0.653158 | 3.4:-72162345 | None:intergenic |
| AGAGAACAACGGTAGAGACA+TGG | 0.654893 | 3.4:+72162264 | MS.gene29026:CDS |
| AGATCAGGACAGTCCAGGTG+TGG | 0.655626 | 3.4:+72162417 | MS.gene29026:CDS |
| GGCTTCTTAAGGTTATATGG+AGG | 0.664268 | 3.4:-72164481 | None:intergenic |
| ATCAACATAGATGTATACCC+TGG | 0.667136 | 3.4:+72162835 | MS.gene29026:CDS |
| TAACGGATGACAATGATGGA+AGG | 0.676865 | 3.4:+72162032 | MS.gene29026:CDS |
| CAAAATGAATCATAGGCTCG+GGG | 0.678249 | 3.4:-72164669 | None:intergenic |
| ACTGGTTTCTGAGAAGCCAG+TGG | 0.679919 | 3.4:+72162603 | MS.gene29026:CDS |
| TGTAAAGGAGAAAAGTGCAG+TGG | 0.690641 | 3.4:+72162468 | MS.gene29026:CDS |
| AAAAGTGATGAAGCTGCTGT+GGG | 0.696516 | 3.4:+72162523 | MS.gene29026:CDS |
| ATAGGCTTCGAACATTGCAG+AGG | 0.705917 | 3.4:-72164032 | None:intergenic |
| AAAGGAAGCAAGTTCCCAAG+CGG | 0.717434 | 3.4:+72161883 | MS.gene29026:CDS |
| TTGGCTAAAGCAGAGAACAA+CGG | 0.720989 | 3.4:+72162253 | MS.gene29026:CDS |
| GTTGGTAAAGAGTATTCTGG+TGG | 0.735908 | 3.4:+72162145 | MS.gene29026:CDS |
| GCAAACTTGTATAATCAACG+CGG | 0.798022 | 3.4:-72164072 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTAAGTATAGAATTTTAAA+AGG | - | chr3.4:72164935-72164954 | None:intergenic | 10.0% |
| !! | ATAATGTATTACATAAAATG+AGG | + | chr3.4:72163405-72163424 | MS.gene29026:intron | 15.0% |
| !! | GACTTCTTAATATAATTTAA+GGG | - | chr3.4:72162646-72162665 | None:intergenic | 15.0% |
| !! | TAAAAAAAGAAGAAAAACAA+TGG | - | chr3.4:72163695-72163714 | None:intergenic | 15.0% |
| !! | TGACTTCTTAATATAATTTA+AGG | - | chr3.4:72162647-72162666 | None:intergenic | 15.0% |
| !!! | ATATGATCTTTTAAATCTAT+GGG | - | chr3.4:72163549-72163568 | None:intergenic | 15.0% |
| !!! | ATTAGTAAATATTGTTACTT+TGG | - | chr3.4:72163847-72163866 | None:intergenic | 15.0% |
| !!! | TATATGATCTTTTAAATCTA+TGG | - | chr3.4:72163550-72163569 | None:intergenic | 15.0% |
| !!! | TTTTTCAATGAAATATGTAT+TGG | + | chr3.4:72162910-72162929 | MS.gene29026:CDS | 15.0% |
| !! | AAAAATTGACGAAGAATTAT+TGG | + | chr3.4:72164744-72164763 | MS.gene29026:CDS | 20.0% |
| !! | AGTGAAAATTTATTTGAAGA+TGG | + | chr3.4:72163881-72163900 | MS.gene29026:intron | 20.0% |
| !! | ATTTCATTGAAAAACAACTT+GGG | - | chr3.4:72162904-72162923 | None:intergenic | 20.0% |
| !! | TATTCAAAATGGAATATTGA+GGG | + | chr3.4:72164447-72164466 | MS.gene29026:CDS | 20.0% |
| !! | TATTTCATTGAAAAACAACT+TGG | - | chr3.4:72162905-72162924 | None:intergenic | 20.0% |
| !! | TTAAATCTATGGGATATTTA+GGG | - | chr3.4:72163539-72163558 | None:intergenic | 20.0% |
| !! | TTCTTTCAAATACAATTTGT+AGG | + | chr3.4:72163485-72163504 | MS.gene29026:intron | 20.0% |
| !! | TTTAAATCTATGGGATATTT+AGG | - | chr3.4:72163540-72163559 | None:intergenic | 20.0% |
| !!! | CTTCTTTTTTTAATTTTGTC+TGG | + | chr3.4:72163703-72163722 | MS.gene29026:intron | 20.0% |
| !!! | TTTAGCCTTAAAATTTATGT+TGG | - | chr3.4:72162185-72162204 | None:intergenic | 20.0% |
| ! | AATCCAATATTTCAACTCTT+TGG | - | chr3.4:72164267-72164286 | None:intergenic | 25.0% |
| ! | ACAATGTTACAATATTCCAA+AGG | + | chr3.4:72163949-72163968 | MS.gene29026:CDS | 25.0% |
| ! | ATACCTAAATATGAACAATG+AGG | - | chr3.4:72165148-72165167 | None:intergenic | 25.0% |
| ! | ATCCATGCAATCTTAATATT+GGG | + | chr3.4:72164340-72164359 | MS.gene29026:CDS | 25.0% |
| ! | ATGTCAGTAAGATTCTTAAA+TGG | + | chr3.4:72164830-72164849 | MS.gene29026:CDS | 25.0% |
| ! | ATTCAAAATGGAATATTGAG+GGG | + | chr3.4:72164448-72164467 | MS.gene29026:CDS | 25.0% |
| ! | ATTCCTCATTGTTCATATTT+AGG | + | chr3.4:72165142-72165161 | MS.gene29026:intron | 25.0% |
| ! | ATTTCAGTTTCAGAATTGAT+CGG | - | chr3.4:72162118-72162137 | None:intergenic | 25.0% |
| ! | CAATGTTACAATATTCCAAA+GGG | + | chr3.4:72163950-72163969 | MS.gene29026:CDS | 25.0% |
| ! | CTATTCAAAATGGAATATTG+AGG | + | chr3.4:72164446-72164465 | MS.gene29026:CDS | 25.0% |
| ! | CTTATCAGAAGATCAATATT+TGG | + | chr3.4:72163188-72163207 | MS.gene29026:CDS | 25.0% |
| ! | GAAAAAAAATTCAATGTCAC+TGG | + | chr3.4:72162076-72162095 | MS.gene29026:CDS | 25.0% |
| ! | GTTAGAAATTGTGTTTACTT+TGG | + | chr3.4:72165096-72165115 | MS.gene29026:intron | 25.0% |
| ! | TGCTAGTGTATAAGATATTA+AGG | - | chr3.4:72164884-72164903 | None:intergenic | 25.0% |
| ! | TTAATGGTAATAATACCCTT+TGG | - | chr3.4:72163968-72163987 | None:intergenic | 25.0% |
| ! | TTCAATGAAATATGTATTGG+AGG | + | chr3.4:72162913-72162932 | MS.gene29026:CDS | 25.0% |
| ! | TTGGAAAGAAGGAAATTATT+TGG | + | chr3.4:72164379-72164398 | MS.gene29026:CDS | 25.0% |
| ! | TTTGATTACGTATGAATTTG+TGG | - | chr3.4:72163288-72163307 | None:intergenic | 25.0% |
| !! | GTCAAGAATCTAGAATATTT+AGG | + | chr3.4:72162776-72162795 | MS.gene29026:CDS | 25.0% |
| !! | TTTAGGTATAGCATAGATTT+TGG | + | chr3.4:72165159-72165178 | MS.gene29026:intron | 25.0% |
| !! | TTTTACGTACAAAAAGACTT+AGG | + | chr3.4:72162803-72162822 | MS.gene29026:CDS | 25.0% |
| !!! | CGTTGATTCATTTATTTGAT+AGG | + | chr3.4:72164633-72164652 | MS.gene29026:intron | 25.0% |
| !!! | CTTTTTTTAATTTTGTCTGG+TGG | + | chr3.4:72163706-72163725 | MS.gene29026:intron | 25.0% |
| !!! | GAAACTGAAATTGATAATGT+TGG | + | chr3.4:72162127-72162146 | MS.gene29026:CDS | 25.0% |
| !!! | TTTCGAGCACAATTTATTTT+TGG | + | chr3.4:72163659-72163678 | MS.gene29026:intron | 25.0% |
| AATAATATTGCTGAGTCAGT+TGG | - | chr3.4:72165231-72165250 | None:intergenic | 30.0% | |
| AATGGCTTCTTAAGGTTATA+TGG | - | chr3.4:72164487-72164506 | None:intergenic | 30.0% | |
| ACCAAAGCAAAATGAATCAT+AGG | - | chr3.4:72164679-72164698 | None:intergenic | 30.0% | |
| AGGATGATATTTCCATTAGT+GGG | + | chr3.4:72163046-72163065 | MS.gene29026:CDS | 30.0% | |
| ATTATACTGTACACCAAACT+AGG | + | chr3.4:72162751-72162770 | MS.gene29026:CDS | 30.0% | |
| CAATATTAAGATTGCATGGA+TGG | - | chr3.4:72164341-72164360 | None:intergenic | 30.0% | |
| CAGAAGATCAATATTTGGAA+AGG | + | chr3.4:72163193-72163212 | MS.gene29026:CDS | 30.0% | |
| CATCCATGCAATCTTAATAT+TGG | + | chr3.4:72164339-72164358 | MS.gene29026:CDS | 30.0% | |
| CGCTCTTAAAAATCTTGTAA+AGG | + | chr3.4:72162453-72162472 | MS.gene29026:CDS | 30.0% | |
| CTTAAAAACTTGGATGAATC+TGG | + | chr3.4:72162946-72162965 | MS.gene29026:CDS | 30.0% | |
| GAACTTACAAAATGACTGAA+TGG | - | chr3.4:72164196-72164215 | None:intergenic | 30.0% | |
| GAGTTCAAATATGTTATAGG+TGG | + | chr3.4:72164403-72164422 | MS.gene29026:CDS | 30.0% | |
| GGAGAGTTCAAATATGTTAT+AGG | + | chr3.4:72164400-72164419 | MS.gene29026:CDS | 30.0% | |
| GTTGATTATACAAGTTTGCA+TGG | + | chr3.4:72164076-72164095 | MS.gene29026:CDS | 30.0% | |
| TAACATTGTGACATCACAAT+TGG | - | chr3.4:72163938-72163957 | None:intergenic | 30.0% | |
| TACAAAAAGACTTAGGTTTG+TGG | + | chr3.4:72162810-72162829 | MS.gene29026:CDS | 30.0% | |
| TATAACCTTAAGAAGCCATT+CGG | + | chr3.4:72164487-72164506 | MS.gene29026:CDS | 30.0% | |
| TGCAAAAGATAAACGCTTAA+AGG | + | chr3.4:72164510-72164529 | MS.gene29026:CDS | 30.0% | |
| TTATACTGTACACCAAACTA+GGG | + | chr3.4:72162752-72162771 | MS.gene29026:CDS | 30.0% | |
| TTGTCTAATTGTCTTAGCTT+TGG | + | chr3.4:72163228-72163247 | MS.gene29026:intron | 30.0% | |
| ! | AACTGACTCAGCAATATTAT+TGG | + | chr3.4:72165230-72165249 | MS.gene29026:CDS | 30.0% |
| ! | AATTCTTCGTCAATTTTTCC+AGG | - | chr3.4:72164742-72164761 | None:intergenic | 30.0% |
| ! | ATGCTATTTGTTGACATTGT+AGG | + | chr3.4:72164218-72164237 | MS.gene29026:intron | 30.0% |
| ! | ATTCATTTTGCTTTGGTATG+TGG | + | chr3.4:72164682-72164701 | MS.gene29026:CDS | 30.0% |
| ! | TCCATTTTGAATAGCTGAAA+GGG | - | chr3.4:72164440-72164459 | None:intergenic | 30.0% |
| ! | TGTCTAATTGTCTTAGCTTT+GGG | + | chr3.4:72163229-72163248 | MS.gene29026:intron | 30.0% |
| ! | TTCCATTTTGAATAGCTGAA+AGG | - | chr3.4:72164441-72164460 | None:intergenic | 30.0% |
| !! | AATGTTGGTAAAGAGTATTC+TGG | + | chr3.4:72162142-72162161 | MS.gene29026:CDS | 30.0% |
| !! | TCAGAGTTCTAAACTTCTAA+CGG | - | chr3.4:72164150-72164169 | None:intergenic | 30.0% |
| !!! | AGGTTTACCAACTGTTTTTT+GGG | + | chr3.4:72163147-72163166 | MS.gene29026:CDS | 30.0% |
| !!! | CTTTTGTTGTTGTTGTTGTT+TGG | + | chr3.4:72164540-72164559 | MS.gene29026:intron | 30.0% |
| AATTTGGACCCTGTATTTGA+TGG | + | chr3.4:72162337-72162356 | MS.gene29026:CDS | 35.0% | |
| AGAAGTTAATGAAGCCAAAC+TGG | + | chr3.4:72162585-72162604 | MS.gene29026:CDS | 35.0% | |
| AGCAAAATGAATCATAGGCT+CGG | - | chr3.4:72164674-72164693 | None:intergenic | 35.0% | |
| ATATCATCCTCTCCAGAAAA+AGG | - | chr3.4:72163036-72163055 | None:intergenic | 35.0% | |
| ATCAACATAGATGTATACCC+TGG | + | chr3.4:72162835-72162854 | MS.gene29026:CDS | 35.0% | |
| ATCCTGATCTTCAATCTGAA+TGG | - | chr3.4:72161936-72161955 | None:intergenic | 35.0% | |
| ATTGTGCTCGAAAGAATCTA+TGG | - | chr3.4:72163652-72163671 | None:intergenic | 35.0% | |
| CAGTAAACTGGATGATACAT+CGG | + | chr3.4:72162003-72162022 | MS.gene29026:CDS | 35.0% | |
| CAGTATAATCCTTCCTTTCA+TGG | - | chr3.4:72162740-72162759 | None:intergenic | 35.0% | |
| CCAGTTTACTGTCAAACTTA+GGG | - | chr3.4:72161994-72162013 | None:intergenic | 35.0% | |
| CTAGATGAAATGCACAGATA+TGG | + | chr3.4:72162220-72162239 | MS.gene29026:CDS | 35.0% | |
| CTTGAGTGAGCTTAAAAACT+TGG | + | chr3.4:72162936-72162955 | MS.gene29026:CDS | 35.0% | |
| GAAGTCATTTGATGTTGATG+TGG | + | chr3.4:72162660-72162679 | MS.gene29026:CDS | 35.0% | |
| GACCCAATATTAAGATTGCA+TGG | - | chr3.4:72164345-72164364 | None:intergenic | 35.0% | |
| GAGGATGATATTTCCATTAG+TGG | + | chr3.4:72163045-72163064 | MS.gene29026:CDS | 35.0% | |
| GATTGAAGATCAGGATAAAG+AGG | + | chr3.4:72161940-72161959 | MS.gene29026:CDS | 35.0% | |
| GCAAACTTGTATAATCAACG+CGG | - | chr3.4:72164075-72164094 | None:intergenic | 35.0% | |
| GCTCCAAAGAGTTGAAATAT+TGG | + | chr3.4:72164261-72164280 | MS.gene29026:CDS | 35.0% | |
| GGAAAACAAAACTGATCAGA+GGG | + | chr3.4:72162681-72162700 | MS.gene29026:CDS | 35.0% | |
| GGATGATATTTCCATTAGTG+GGG | + | chr3.4:72163047-72163066 | MS.gene29026:CDS | 35.0% | |
| TCAATATTTGGAAAGGCTAG+AGG | + | chr3.4:72163200-72163219 | MS.gene29026:CDS | 35.0% | |
| TCCAGTTTACTGTCAAACTT+AGG | - | chr3.4:72161995-72162014 | None:intergenic | 35.0% | |
| TCCCTTTCAGCTATTCAAAA+TGG | + | chr3.4:72164436-72164455 | MS.gene29026:CDS | 35.0% | |
| TCTCAGAATGTTGTTCATGA+TGG | + | chr3.4:72161968-72161987 | MS.gene29026:CDS | 35.0% | |
| TGGAAAACAAAACTGATCAG+AGG | + | chr3.4:72162680-72162699 | MS.gene29026:CDS | 35.0% | |
| TGTAACCTTCAATTCAGAAG+AGG | - | chr3.4:72165265-72165284 | None:intergenic | 35.0% | |
| TTAATATTGGGTCATCCAGA+TGG | + | chr3.4:72164352-72164371 | MS.gene29026:CDS | 35.0% | |
| TTGTGCTCGAAAGAATCTAT+GGG | - | chr3.4:72163651-72163670 | None:intergenic | 35.0% | |
| ! | GCCTATGATTCATTTTGCTT+TGG | + | chr3.4:72164675-72164694 | MS.gene29026:CDS | 35.0% |
| ! | GGAGGCCAACATAAATTTTA+AGG | + | chr3.4:72162177-72162196 | MS.gene29026:CDS | 35.0% |
| ! | TACATATCAGCCTTATGACT+GGG | + | chr3.4:72165281-72165300 | MS.gene29026:CDS | 35.0% |
| ! | TTAATTTTGTCTGGTGGTAC+AGG | + | chr3.4:72163712-72163731 | MS.gene29026:intron | 35.0% |
| ! | TTACATATCAGCCTTATGAC+TGG | + | chr3.4:72165280-72165299 | MS.gene29026:CDS | 35.0% |
| !! | CAATCATGTGTATCGCTTTT+TGG | + | chr3.4:72163904-72163923 | MS.gene29026:CDS | 35.0% |
| !!! | CAGGTTTACCAACTGTTTTT+TGG | + | chr3.4:72163146-72163165 | MS.gene29026:CDS | 35.0% |
| !!! | CTTCATCACTTTTTCCAGAA+AGG | - | chr3.4:72162516-72162535 | None:intergenic | 35.0% |
| AAAAAGTGATGAAGCTGCTG+TGG | + | chr3.4:72162522-72162541 | MS.gene29026:CDS | 40.0% | |
| AAAAGTGATGAAGCTGCTGT+GGG | + | chr3.4:72162523-72162542 | MS.gene29026:CDS | 40.0% | |
| AAACAACTTGGGAACAGAAG+TGG | - | chr3.4:72162893-72162912 | None:intergenic | 40.0% | |
| AATTTGTGGAATCGCTTGTG+TGG | - | chr3.4:72163274-72163293 | None:intergenic | 40.0% | |
| ACAGATTGTACAAAATGCGC+AGG | + | chr3.4:72163127-72163146 | MS.gene29026:CDS | 40.0% | |
| ACATCTACCCGTAAATTGGA+TGG | + | chr3.4:72162394-72162413 | MS.gene29026:CDS | 40.0% | |
| AGACATGGAATCCACAGATA+TGG | + | chr3.4:72162279-72162298 | MS.gene29026:CDS | 40.0% | |
| AGATTCTTGACACCCTAGTT+TGG | - | chr3.4:72162767-72162786 | None:intergenic | 40.0% | |
| ATCCACAGATATGGATCAGA+AGG | + | chr3.4:72162288-72162307 | MS.gene29026:CDS | 40.0% | |
| ATCCTTCCTTTCATGGCTAT+TGG | - | chr3.4:72162733-72162752 | None:intergenic | 40.0% | |
| CAAAATGAATCATAGGCTCG+GGG | - | chr3.4:72164672-72164691 | None:intergenic | 40.0% | |
| CAGAGGGATTCAGTAACAAA+TGG | + | chr3.4:72162697-72162716 | MS.gene29026:CDS | 40.0% | |
| CCCTAAGTTTGACAGTAAAC+TGG | + | chr3.4:72161991-72162010 | MS.gene29026:CDS | 40.0% | |
| CCTGATCTCCATCCAATTTA+CGG | - | chr3.4:72162405-72162424 | None:intergenic | 40.0% | |
| CTATCGCAGAAATTGCATCA+AGG | + | chr3.4:72163996-72164015 | MS.gene29026:CDS | 40.0% | |
| CTGATCTCCATCCAATTTAC+GGG | - | chr3.4:72162404-72162423 | None:intergenic | 40.0% | |
| CTTGATGCAATTTCTGCGAT+AGG | - | chr3.4:72163998-72164017 | None:intergenic | 40.0% | |
| GAAGCCTATGCTATTGAAGA+TGG | + | chr3.4:72164046-72164065 | MS.gene29026:CDS | 40.0% | |
| GCAAAATGAATCATAGGCTC+GGG | - | chr3.4:72164673-72164692 | None:intergenic | 40.0% | |
| GCATCCATCTTCAATAGCAT+AGG | - | chr3.4:72164053-72164072 | None:intergenic | 40.0% | |
| GGCTTCTTAAGGTTATATGG+AGG | - | chr3.4:72164484-72164503 | None:intergenic | 40.0% | |
| TAAGGTTATATGGAGGTCGT+TGG | - | chr3.4:72164477-72164496 | None:intergenic | 40.0% | |
| TACAAGTTTGCATGGAAGTG+AGG | + | chr3.4:72164084-72164103 | MS.gene29026:CDS | 40.0% | |
| TAGTTCAAACCCCAGTCATA+AGG | - | chr3.4:72165294-72165313 | None:intergenic | 40.0% | |
| TCATCACCAATAGCCATGAA+AGG | + | chr3.4:72162724-72162743 | MS.gene29026:CDS | 40.0% | |
| TCCAAATTGTTGTCCTCACT+TGG | - | chr3.4:72162325-72162344 | None:intergenic | 40.0% | |
| TCCAAGTGAGGACAACAATT+TGG | + | chr3.4:72162321-72162340 | MS.gene29026:CDS | 40.0% | |
| TGAAATGCACAGATATGGAC+TGG | + | chr3.4:72162225-72162244 | MS.gene29026:CDS | 40.0% | |
| TGATACATCGGACGTGATAA+CGG | + | chr3.4:72162015-72162034 | MS.gene29026:CDS | 40.0% | |
| TGCCATTCAGATTGAAGATC+AGG | + | chr3.4:72161931-72161950 | MS.gene29026:CDS | 40.0% | |
| TGTATACCCTGGTAGAAAGA+CGG | + | chr3.4:72162846-72162865 | MS.gene29026:CDS | 40.0% | |
| TTCAATGTCACTGGAGATTC+TGG | + | chr3.4:72162085-72162104 | MS.gene29026:CDS | 40.0% | |
| TTGAATAGCTGAAAGGGAGT+AGG | - | chr3.4:72164434-72164453 | None:intergenic | 40.0% | |
| TTGGCTAAAGCAGAGAACAA+CGG | + | chr3.4:72162253-72162272 | MS.gene29026:CDS | 40.0% | |
| ! | ACATATCAGCCTTATGACTG+GGG | + | chr3.4:72165282-72165301 | MS.gene29026:CDS | 40.0% |
| ! | AGAGTATTCTGGTGGTGATA+AGG | + | chr3.4:72162153-72162172 | MS.gene29026:CDS | 40.0% |
| ! | CGTTTATCTTTTGCACCGAA+TGG | - | chr3.4:72164505-72164524 | None:intergenic | 40.0% |
| ! | TAACGGATGACAATGATGGA+AGG | + | chr3.4:72162032-72162051 | MS.gene29026:CDS | 40.0% |
| ! | TCAGCATTTGTTGGAGACAA+AGG | + | chr3.4:72161865-72161884 | MS.gene29026:CDS | 40.0% |
| ! | TGTAAAGGAGAAAAGTGCAG+TGG | + | chr3.4:72162468-72162487 | MS.gene29026:CDS | 40.0% |
| !! | AGGTCTCGTGATTGATTTGA+CGG | + | chr3.4:72164795-72164814 | MS.gene29026:CDS | 40.0% |
| !! | CAGATATGGACTGGATGATT+TGG | + | chr3.4:72162234-72162253 | MS.gene29026:CDS | 40.0% |
| !! | GGTGATGGGGTTTCAAATAA+CGG | - | chr3.4:72163012-72163031 | None:intergenic | 40.0% |
| !! | GTGATAACGGATGACAATGA+TGG | + | chr3.4:72162028-72162047 | MS.gene29026:CDS | 40.0% |
| !! | GTTGGTAAAGAGTATTCTGG+TGG | + | chr3.4:72162145-72162164 | MS.gene29026:CDS | 40.0% |
| !! | TGCGATAGGCTTTGGATTAA+TGG | - | chr3.4:72163984-72164003 | None:intergenic | 40.0% |
| !! | TTCATGGCTATTGGTGATGA+TGG | - | chr3.4:72162724-72162743 | None:intergenic | 40.0% |
| !!! | CATCACTTTTTCCAGAAAGG+CGG | - | chr3.4:72162513-72162532 | None:intergenic | 40.0% |
| !!! | GTGGGTGATTTTGATGATGA+AGG | + | chr3.4:72162541-72162560 | MS.gene29026:CDS | 40.0% |
| AAAGGAAGCAAGTTCCCAAG+CGG | + | chr3.4:72161883-72161902 | MS.gene29026:CDS | 45.0% | |
| AATAGCTGAAAGGGAGTAGG+TGG | - | chr3.4:72164431-72164450 | None:intergenic | 45.0% | |
| ACCTCGGTTCCATCAAATAC+AGG | - | chr3.4:72162349-72162368 | None:intergenic | 45.0% | |
| ACGGAGTTGGAGAAGATATC+TGG | + | chr3.4:72162865-72162884 | MS.gene29026:CDS | 45.0% | |
| ACTCGCAATTTCCTGAGAAG+TGG | + | chr3.4:72164772-72164791 | MS.gene29026:CDS | 45.0% | |
| AGAGAACAACGGTAGAGACA+TGG | + | chr3.4:72162264-72162283 | MS.gene29026:CDS | 45.0% | |
| AGGTTGCTTACTCGTTGTGT+CGG | - | chr3.4:72164915-72164934 | None:intergenic | 45.0% | |
| ATAGGCTTCGAACATTGCAG+AGG | - | chr3.4:72164035-72164054 | None:intergenic | 45.0% | |
| ATTTACGGGTAGATGTGCTC+CGG | - | chr3.4:72162390-72162409 | None:intergenic | 45.0% | |
| ATTTGATGGAACCGAGGTTC+CGG | + | chr3.4:72162351-72162370 | MS.gene29026:CDS | 45.0% | |
| CACCAATAGCCATGAAAGGA+AGG | + | chr3.4:72162728-72162747 | MS.gene29026:CDS | 45.0% | |
| CCGTAAATTGGATGGAGATC+AGG | + | chr3.4:72162402-72162421 | MS.gene29026:CDS | 45.0% | |
| CCTCGGTTCCATCAAATACA+GGG | - | chr3.4:72162348-72162367 | None:intergenic | 45.0% | |
| CTCCAGAAAAAGGTGGTGAT+GGG | - | chr3.4:72163026-72163045 | None:intergenic | 45.0% | |
| CTTCTTTCCAATGCTCCATC+TGG | - | chr3.4:72164370-72164389 | None:intergenic | 45.0% | |
| GAGCACATCTACCCGTAAAT+TGG | + | chr3.4:72162390-72162409 | MS.gene29026:CDS | 45.0% | |
| GCAATTTCTGCGATAGGCTT+TGG | - | chr3.4:72163992-72164011 | None:intergenic | 45.0% | |
| GCTTGCCTCTTCTGAATTGA+AGG | + | chr3.4:72165257-72165276 | MS.gene29026:CDS | 45.0% | |
| GGCAGATGAAATTCCAAGTG+AGG | + | chr3.4:72162309-72162328 | MS.gene29026:CDS | 45.0% | |
| GTCTGAGCCCAAAAAACAGT+TGG | - | chr3.4:72163157-72163176 | None:intergenic | 45.0% | |
| TCAATTCAGAAGAGGCAAGC+AGG | - | chr3.4:72165257-72165276 | None:intergenic | 45.0% | |
| TCATCCTCTCCAGAAAAAGG+TGG | - | chr3.4:72163033-72163052 | None:intergenic | 45.0% | |
| TCTCCAGAAAAAGGTGGTGA+TGG | - | chr3.4:72163027-72163046 | None:intergenic | 45.0% | |
| TGCATCAAGGCTGAGATTTC+TGG | + | chr3.4:72164009-72164028 | MS.gene29026:CDS | 45.0% | |
| TGCCTTCTGATCCATATCTG+TGG | - | chr3.4:72162293-72162312 | None:intergenic | 45.0% | |
| TGGCTTCTCAGAAACCAGTT+TGG | - | chr3.4:72162602-72162621 | None:intergenic | 45.0% | |
| TTCATCAACTGCCCCACTAA+TGG | - | chr3.4:72163061-72163080 | None:intergenic | 45.0% | |
| TTCCAAGCAGATTTCTCCAC+TGG | - | chr3.4:72162622-72162641 | None:intergenic | 45.0% | |
| TTGCACCGAATGGCTTCTTA+AGG | - | chr3.4:72164495-72164514 | None:intergenic | 45.0% | |
| TTGCATGGAAGTGAGGAGTT+CGG | + | chr3.4:72164091-72164110 | MS.gene29026:CDS | 45.0% | |
| ! | GTATTCTGGTGGTGATAAGG+TGG | + | chr3.4:72162156-72162175 | MS.gene29026:CDS | 45.0% |
| ! | TCCAGAAAAAGGTGGTGATG+GGG | - | chr3.4:72163025-72163044 | None:intergenic | 45.0% |
| ! | TCCAGGAGAATAGCATCGAA+GGG | - | chr3.4:72164725-72164744 | None:intergenic | 45.0% |
| ! | TTCCAGGAGAATAGCATCGA+AGG | - | chr3.4:72164726-72164745 | None:intergenic | 45.0% |
| ! | TTTTGGCAAAAGCGAGCTTG+AGG | + | chr3.4:72165176-72165195 | MS.gene29026:CDS | 45.0% |
| !! | ATCACCACCTTTTTCTGGAG+AGG | + | chr3.4:72163026-72163045 | MS.gene29026:CDS | 45.0% |
| !! | CAGATGGAGCATTGGAAAGA+AGG | + | chr3.4:72164368-72164387 | MS.gene29026:CDS | 45.0% |
| !! | TAGTGGGGCAGTTGATGAAT+TGG | + | chr3.4:72163062-72163081 | MS.gene29026:CDS | 45.0% |
| AGCCAGTGGAGAAATCTGCT+TGG | + | chr3.4:72162617-72162636 | MS.gene29026:CDS | 50.0% | |
| CCAACTCCGTCTTTCTACCA+GGG | - | chr3.4:72162855-72162874 | None:intergenic | 50.0% | |
| CCCTGTATTTGATGGAACCG+AGG | + | chr3.4:72162345-72162364 | MS.gene29026:CDS | 50.0% | |
| CGCAATTTCCTGAGAAGTGG+AGG | + | chr3.4:72164775-72164794 | MS.gene29026:CDS | 50.0% | |
| GAATCATAGGCTCGGGGTAA+GGG | - | chr3.4:72164666-72164685 | None:intergenic | 50.0% | |
| TCCAACTCCGTCTTTCTACC+AGG | - | chr3.4:72162856-72162875 | None:intergenic | 50.0% | |
| TGAATCATAGGCTCGGGGTA+AGG | - | chr3.4:72164667-72164686 | None:intergenic | 50.0% | |
| TTCCGGGGATGCAAGTTAAC+CGG | + | chr3.4:72162368-72162387 | MS.gene29026:CDS | 50.0% | |
| TTGCAGCTTCTCAACCGCTT+GGG | - | chr3.4:72161900-72161919 | None:intergenic | 50.0% | |
| TTTGATGGAACCGAGGTTCC+GGG | + | chr3.4:72162352-72162371 | MS.gene29026:CDS | 50.0% | |
| ! | ACCCCATCACCACCTTTTTC+TGG | + | chr3.4:72163021-72163040 | MS.gene29026:CDS | 50.0% |
| ! | ACTGGTTTCTGAGAAGCCAG+TGG | + | chr3.4:72162603-72162622 | MS.gene29026:CDS | 50.0% |
| ! | TTCTGGTGGTGATAAGGTGG+AGG | + | chr3.4:72162159-72162178 | MS.gene29026:CDS | 50.0% |
| AACTTGCATCCCCGGAACCT+CGG | - | chr3.4:72162365-72162384 | None:intergenic | 55.0% | |
| ACTGCCTTCTCAACCACACC+TGG | - | chr3.4:72162433-72162452 | None:intergenic | 55.0% | |
| AGATCAGGACAGTCCAGGTG+TGG | + | chr3.4:72162417-72162436 | MS.gene29026:CDS | 55.0% | |
| ATGGAAGTGAGGAGTTCGGC+AGG | + | chr3.4:72164095-72164114 | MS.gene29026:CDS | 55.0% | |
| CAGTCCAGGTGTGGTTGAGA+AGG | + | chr3.4:72162426-72162445 | MS.gene29026:CDS | 55.0% | |
| CCCTGGTAGAAAGACGGAGT+TGG | + | chr3.4:72162852-72162871 | MS.gene29026:CDS | 55.0% | |
| CTTGCAGCTTCTCAACCGCT+TGG | - | chr3.4:72161901-72161920 | None:intergenic | 55.0% | |
| GATGGAGATCAGGACAGTCC+AGG | + | chr3.4:72162412-72162431 | MS.gene29026:CDS | 55.0% | |
| GCCCTTCGATGCTATTCTCC+TGG | + | chr3.4:72164721-72164740 | MS.gene29026:CDS | 55.0% | |
| GGGTCATCCAGATGGAGCAT+TGG | + | chr3.4:72164360-72164379 | MS.gene29026:CDS | 55.0% | |
| TCACGAGACCTCCACTTCTC+AGG | - | chr3.4:72164786-72164805 | None:intergenic | 55.0% | |
| TGGTATGTGGCACCCGATCT+GGG | + | chr3.4:72164695-72164714 | MS.gene29026:CDS | 55.0% | |
| TTGATGGAACCGAGGTTCCG+GGG | + | chr3.4:72162353-72162372 | MS.gene29026:CDS | 55.0% | |
| TTGGTATGTGGCACCCGATC+TGG | + | chr3.4:72164694-72164713 | MS.gene29026:CDS | 55.0% | |
| ! | GGAGAATAGCATCGAAGGGC+AGG | - | chr3.4:72164721-72164740 | None:intergenic | 55.0% |
| !! | CTCCGGTTAACTTGCATCCC+CGG | - | chr3.4:72162373-72162392 | None:intergenic | 55.0% |
| ACTATGCTGCGCCGCCTTTC+TGG | + | chr3.4:72162499-72162518 | MS.gene29026:CDS | 60.0% | |
| AGAAAGGCGGCGCAGCATAG+TGG | - | chr3.4:72162500-72162519 | None:intergenic | 60.0% | |
| ATCGAAGGGCAGGCCCAGAT+CGG | - | chr3.4:72164711-72164730 | None:intergenic | 60.0% | |
| TCGAAGGGCAGGCCCAGATC+GGG | - | chr3.4:72164710-72164729 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 72161857 | 72165317 | 72161857 | ID=MS.gene29026 |
| chr3.4 | mRNA | 72161857 | 72165317 | 72161857 | ID=MS.gene29026.t1;Parent=MS.gene29026 |
| chr3.4 | exon | 72161857 | 72163221 | 72161857 | ID=MS.gene29026.t1.exon1;Parent=MS.gene29026.t1 |
| chr3.4 | CDS | 72161857 | 72163221 | 72161857 | ID=cds.MS.gene29026.t1;Parent=MS.gene29026.t1 |
| chr3.4 | exon | 72163734 | 72163789 | 72163734 | ID=MS.gene29026.t1.exon2;Parent=MS.gene29026.t1 |
| chr3.4 | CDS | 72163734 | 72163789 | 72163734 | ID=cds.MS.gene29026.t1;Parent=MS.gene29026.t1 |
| chr3.4 | exon | 72163883 | 72164116 | 72163883 | ID=MS.gene29026.t1.exon3;Parent=MS.gene29026.t1 |
| chr3.4 | CDS | 72163883 | 72164116 | 72163883 | ID=cds.MS.gene29026.t1;Parent=MS.gene29026.t1 |
| chr3.4 | exon | 72164240 | 72164531 | 72164240 | ID=MS.gene29026.t1.exon4;Parent=MS.gene29026.t1 |
| chr3.4 | CDS | 72164240 | 72164531 | 72164240 | ID=cds.MS.gene29026.t1;Parent=MS.gene29026.t1 |
| chr3.4 | exon | 72164655 | 72164851 | 72164655 | ID=MS.gene29026.t1.exon5;Parent=MS.gene29026.t1 |
| chr3.4 | CDS | 72164655 | 72164851 | 72164655 | ID=cds.MS.gene29026.t1;Parent=MS.gene29026.t1 |
| chr3.4 | exon | 72165164 | 72165317 | 72165164 | ID=MS.gene29026.t1.exon6;Parent=MS.gene29026.t1 |
| chr3.4 | CDS | 72165164 | 72165317 | 72165164 | ID=cds.MS.gene29026.t1;Parent=MS.gene29026.t1 |
| Gene Sequence |
| Protein sequence |
