Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29609.t1 | XP_003616582.1 | 97.9 | 284 | 6 | 0 | 1 | 284 | 1 | 284 | 1.30E-153 | 552.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29609.t1 | O04202 | 71.5 | 291 | 75 | 1 | 2 | 284 | 3 | 293 | 1.0e-119 | 431.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29609.t1 | G7KBY4 | 97.9 | 284 | 6 | 0 | 1 | 284 | 1 | 284 | 9.0e-154 | 552.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene29609 | MS.gene69251 | PPI |
| MS.gene29609 | MS.gene86150 | PPI |
| MS.gene29609 | MS.gene018310 | PPI |
| MS.gene008081 | MS.gene29609 | PPI |
| MS.gene017884 | MS.gene29609 | PPI |
| MS.gene29609 | MS.gene057320 | PPI |
| MS.gene29609 | MS.gene80661 | PPI |
| MS.gene29609 | MS.gene29607 | PPI |
| MS.gene29609 | MS.gene37293 | PPI |
| MS.gene018309 | MS.gene29609 | PPI |
| MS.gene29609 | MS.gene56675 | PPI |
| MS.gene29609 | MS.gene80790 | PPI |
| MS.gene031999 | MS.gene29609 | PPI |
| MS.gene29609 | MS.gene014112 | PPI |
| MS.gene29609 | MS.gene39043 | PPI |
| MS.gene42526 | MS.gene29609 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29609.t1 | MTR_5g082000 | 97.887 | 284 | 6 | 0 | 1 | 284 | 1 | 284 | 0.0 | 573 |
| MS.gene29609.t1 | MTR_3g070190 | 87.500 | 288 | 32 | 1 | 1 | 284 | 1 | 288 | 0.0 | 506 |
| MS.gene29609.t1 | MTR_3g070180 | 30.851 | 282 | 178 | 6 | 10 | 278 | 8 | 285 | 1.31e-31 | 119 |
| MS.gene29609.t1 | MTR_5g081980 | 30.996 | 271 | 170 | 6 | 21 | 278 | 19 | 285 | 2.14e-31 | 119 |
| MS.gene29609.t1 | MTR_5g082010 | 37.162 | 148 | 35 | 4 | 70 | 217 | 5 | 94 | 1.43e-19 | 82.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29609.t1 | AT2G39990 | 71.478 | 291 | 75 | 1 | 2 | 284 | 3 | 293 | 9.26e-149 | 418 |
| MS.gene29609.t1 | AT3G11270 | 32.624 | 282 | 170 | 8 | 10 | 278 | 8 | 282 | 5.56e-34 | 125 |
| MS.gene29609.t1 | AT3G11270 | 32.281 | 285 | 170 | 8 | 10 | 278 | 8 | 285 | 1.74e-33 | 124 |
| MS.gene29609.t1 | AT5G05780 | 30.108 | 279 | 181 | 6 | 10 | 278 | 8 | 282 | 5.89e-31 | 117 |
| MS.gene29609.t1 | AT5G05780 | 29.787 | 282 | 181 | 6 | 10 | 278 | 8 | 285 | 1.51e-30 | 116 |
Find 69 sgRNAs with CRISPR-Local
Find 236 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCTTCACAGACCTTATC+TGG | 0.146944 | 5.2:-70064225 | MS.gene29609:CDS |
| AAATGCCAATGAGGTCATTT+TGG | 0.165567 | 5.2:+70060843 | None:intergenic |
| GTTGACCCAGACAACAAAAT+TGG | 0.240414 | 5.2:-70060898 | MS.gene29609:CDS |
| GGTGGGATAGTAACATATTA+TGG | 0.265911 | 5.2:+70063042 | None:intergenic |
| CTTCTCGAGAATAAAATTCA+TGG | 0.333882 | 5.2:+70062847 | None:intergenic |
| AAAATCCCATCTGATATAGA+AGG | 0.343652 | 5.2:-70061000 | MS.gene29609:CDS |
| CCATCCAACTATAACTTCCT+TGG | 0.366694 | 5.2:+70063007 | None:intergenic |
| TGCAGGTATTCAACTGGTCT+TGG | 0.400141 | 5.2:-70062894 | MS.gene29609:intron |
| CATCCAACTATAACTTCCTT+GGG | 0.416516 | 5.2:+70063008 | None:intergenic |
| GTGTCAACAGTCAAATGTAT+TGG | 0.427871 | 5.2:+70062816 | None:intergenic |
| GCTTGTGAATGACAGCTTGC+AGG | 0.436231 | 5.2:-70060815 | MS.gene29609:intron |
| ATTTCGTGCAGGTATTCAAC+TGG | 0.436544 | 5.2:-70062900 | MS.gene29609:intron |
| AGCCTCAATGACACATCTAT+TGG | 0.437864 | 5.2:-70060971 | MS.gene29609:CDS |
| GCACAATGAGTCCGTTGATC+AGG | 0.442467 | 5.2:-70064061 | MS.gene29609:intron |
| TTCCGATGACGCGCTCCGCT+TGG | 0.444809 | 5.2:+70064145 | None:intergenic |
| ACAGTTTCAAGAAATTCCTT+TGG | 0.446019 | 5.2:-70062715 | MS.gene29609:CDS |
| TCAACTGGTCTTGGAGTAAC+CGG | 0.447005 | 5.2:-70062885 | MS.gene29609:CDS |
| AACATCATCAACATATTTGT+AGG | 0.458717 | 5.2:+70060933 | None:intergenic |
| CGGATATCAACGGTTCCGTC+GGG | 0.460154 | 5.2:+70064102 | None:intergenic |
| AATGACACATCTATTGGCCT+TGG | 0.461549 | 5.2:-70060965 | MS.gene29609:CDS |
| CCTTCCCAAAATGACCTCAT+TGG | 0.463208 | 5.2:-70060848 | MS.gene29609:CDS |
| ATGACGCGCTCCGCTTGGTC+AGG | 0.463914 | 5.2:+70064150 | None:intergenic |
| CGCGTCATCGGAACGCTCCT+CGG | 0.471682 | 5.2:-70064135 | MS.gene29609:CDS |
| GTTTCAAACAATTTATCACT+TGG | 0.476789 | 5.2:-70062756 | MS.gene29609:CDS |
| TTGACCCAGACAACAAAATT+GGG | 0.481778 | 5.2:-70060897 | MS.gene29609:CDS |
| CTCGGTTCCGTTCTCCCCGA+CGG | 0.503780 | 5.2:-70064117 | MS.gene29609:CDS |
| CACAAGGACACAGCTCAGCC+TGG | 0.504225 | 5.2:-70060566 | MS.gene29609:CDS |
| TCCATCCCTTCTATATCAGA+TGG | 0.510316 | 5.2:+70060994 | None:intergenic |
| AATTCCTTTGGATCTTCGTA+TGG | 0.511279 | 5.2:-70062703 | MS.gene29609:CDS |
| AATCCCAAGGAAGTTATAGT+TGG | 0.514876 | 5.2:-70063011 | MS.gene29609:CDS |
| TGTCAACAGTCAAATGTATT+GGG | 0.515694 | 5.2:+70062817 | None:intergenic |
| GACCAAGCGGAGCGCGTCAT+CGG | 0.516314 | 5.2:-70064147 | MS.gene29609:CDS |
| AACAGTCAAATGTATTGGGT+TGG | 0.517495 | 5.2:+70062821 | None:intergenic |
| CCCATCTGATATAGAAGGGA+TGG | 0.517833 | 5.2:-70060995 | MS.gene29609:CDS |
| TTCACAGACCTTATCTGGGA+AGG | 0.523217 | 5.2:-70064220 | MS.gene29609:CDS |
| CTTCTTCACAGACCTTATCT+GGG | 0.527844 | 5.2:-70064224 | MS.gene29609:CDS |
| ATGGATTAATGCACTGCCAC+CGG | 0.529881 | 5.2:+70062866 | None:intergenic |
| AACGGTTCCGTCGGGGAGAA+CGG | 0.534492 | 5.2:+70064110 | None:intergenic |
| AGGATGAACCTTCCCAGATA+AGG | 0.554951 | 5.2:+70064212 | None:intergenic |
| CCATCCCTTCTATATCAGAT+GGG | 0.557710 | 5.2:+70060995 | None:intergenic |
| CCAAGGAAGTTATAGTTGGA+TGG | 0.560349 | 5.2:-70063007 | MS.gene29609:intron |
| GCGGATATCAACGGTTCCGT+CGG | 0.569810 | 5.2:+70064101 | None:intergenic |
| CAAATATGTTGATGATGTTG+TGG | 0.577796 | 5.2:-70060929 | MS.gene29609:CDS |
| CACAGGATTTGCAGATGGAG+AGG | 0.582511 | 5.2:-70062796 | MS.gene29609:CDS |
| GTATGAATTGCGGATATCAA+CGG | 0.586004 | 5.2:+70064092 | None:intergenic |
| AAATGTATATCAGATGTTGT+AGG | 0.590500 | 5.2:-70060874 | MS.gene29609:CDS |
| AACGGACTCATTGTGCGGAA+CGG | 0.592689 | 5.2:+70064068 | None:intergenic |
| GTTGACACAGGATTTGCAGA+TGG | 0.595147 | 5.2:-70062801 | MS.gene29609:CDS |
| ATGGTTGAAGCTGAGCGCAT+TGG | 0.598696 | 5.2:-70062684 | MS.gene29609:CDS |
| AAATCCCATCTGATATAGAA+GGG | 0.606690 | 5.2:-70060999 | MS.gene29609:CDS |
| ACAGGATTTGCAGATGGAGA+GGG | 0.622352 | 5.2:-70062795 | MS.gene29609:CDS |
| AAGCTCATCAAATGCCAATG+AGG | 0.623144 | 5.2:+70060834 | None:intergenic |
| TGTCCGTCGTCCTGACCAAG+CGG | 0.631366 | 5.2:-70064160 | MS.gene29609:CDS |
| GCGGAACGGCGTATGAATTG+CGG | 0.635130 | 5.2:+70064082 | None:intergenic |
| AGAGTAAAGGACCTGATCAA+CGG | 0.636781 | 5.2:+70064050 | None:intergenic |
| ATACATTTGACTGTTGACAC+AGG | 0.640476 | 5.2:-70062813 | MS.gene29609:CDS |
| TCAACCATACGAAGATCCAA+AGG | 0.640847 | 5.2:+70062699 | None:intergenic |
| GGCCAATAGATGTGTCATTG+AGG | 0.644097 | 5.2:+70060969 | None:intergenic |
| TATGTTGATGATGTTGTGGA+AGG | 0.648589 | 5.2:-70060925 | MS.gene29609:CDS |
| TGATCAACGGACTCATTGTG+CGG | 0.657332 | 5.2:+70064063 | None:intergenic |
| GCTCCGCTTGGTCAGGACGA+CGG | 0.661779 | 5.2:+70064157 | None:intergenic |
| TTTGTAGGTGTCATCAACCA+AGG | 0.664422 | 5.2:+70060948 | None:intergenic |
| CGTCGGGGAGAACGGAACCG+AGG | 0.682382 | 5.2:+70064118 | None:intergenic |
| GGGATAGTAACATATTATGG+TGG | 0.686225 | 5.2:+70063045 | None:intergenic |
| ATGTTGATGATGTTGTGGAA+GGG | 0.687818 | 5.2:-70060924 | MS.gene29609:CDS |
| CAGATGTTGAAGATAACGAG+AGG | 0.689403 | 5.2:+70064192 | None:intergenic |
| ACTGGTCTTGGAGTAACCGG+TGG | 0.692326 | 5.2:-70062882 | MS.gene29609:CDS |
| GGATATCAACGGTTCCGTCG+GGG | 0.703000 | 5.2:+70064103 | None:intergenic |
| TATATTTATCTAGCATCACA+AGG | 0.712944 | 5.2:-70060582 | MS.gene29609:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAATTTAATAAATTGTAG+GGG | - | chr5.2:70064045-70064064 | MS.gene29609:intron | 10.0% |
| !! | GAATAAATTTAATAAATTGT+AGG | - | chr5.2:70064043-70064062 | MS.gene29609:intron | 10.0% |
| !!! | CTAACTTTTAAATAAAAATT+TGG | - | chr5.2:70061427-70061446 | MS.gene29609:intron | 10.0% |
| !!! | TCTAATTTAAAATGAAAATT+TGG | - | chr5.2:70061238-70061257 | MS.gene29609:intron | 10.0% |
| !!! | TTTCATTTACTTTTATTAAT+AGG | - | chr5.2:70061702-70061721 | MS.gene29609:intron | 10.0% |
| !! | AAATAAAACTGTATATTTGA+TGG | - | chr5.2:70061529-70061548 | MS.gene29609:intron | 15.0% |
| !! | AAATGGCTTATAAATTATAA+TGG | - | chr5.2:70063671-70063690 | MS.gene29609:intron | 15.0% |
| !! | TGATTATCTATAAATACAAA+AGG | - | chr5.2:70061658-70061677 | MS.gene29609:intron | 15.0% |
| !! | TTAAAGAAAATGTTAAGTTT+GGG | - | chr5.2:70061086-70061105 | MS.gene29609:intron | 15.0% |
| !!! | AATTATGAAAATAGTTCTTT+TGG | - | chr5.2:70064085-70064104 | MS.gene29609:CDS | 15.0% |
| !!! | ATCATCTTTAAAATAAAACA+AGG | + | chr5.2:70063394-70063413 | None:intergenic | 15.0% |
| !!! | TTCATTTAGTGATTTTTTTA+TGG | - | chr5.2:70062456-70062475 | MS.gene29609:intron | 15.0% |
| !!! | TTTGTTTTGTAAATTTTTGT+TGG | - | chr5.2:70061824-70061843 | MS.gene29609:intron | 15.0% |
| !! | AAGAAATATCCTAAAATATG+TGG | + | chr5.2:70063241-70063260 | None:intergenic | 20.0% |
| !! | AGAAATATCCTAAAATATGT+GGG | + | chr5.2:70063240-70063259 | None:intergenic | 20.0% |
| !! | ATTTATGTATCACTTTATCA+TGG | - | chr5.2:70063601-70063620 | MS.gene29609:intron | 20.0% |
| !! | ATTTGACAATAACAATATCA+CGG | + | chr5.2:70060969-70060988 | None:intergenic | 20.0% |
| !! | CTTAAAGAAAATGTTAAGTT+TGG | - | chr5.2:70061085-70061104 | MS.gene29609:intron | 20.0% |
| !! | TAAAGAAAATGTTAAGTTTG+GGG | - | chr5.2:70061087-70061106 | MS.gene29609:intron | 20.0% |
| !! | TTAGAATAAAATTAGGTGTT+TGG | - | chr5.2:70063276-70063295 | MS.gene29609:intron | 20.0% |
| !!! | AACTTGATGCATTTTTTAAT+TGG | + | chr5.2:70061386-70061405 | None:intergenic | 20.0% |
| !!! | AGATTTTTAGAAGAAACAAA+TGG | + | chr5.2:70061614-70061633 | None:intergenic | 20.0% |
| !!! | AGTTGCTTTAGAATAAAATT+AGG | - | chr5.2:70063269-70063288 | MS.gene29609:intron | 20.0% |
| !!! | ATTTGAAATGTTAATTTCTC+TGG | + | chr5.2:70060856-70060875 | None:intergenic | 20.0% |
| !!! | CTGTTTTATGTTTTTATCAA+AGG | - | chr5.2:70062165-70062184 | MS.gene29609:intron | 20.0% |
| !!! | TCTTCTAAAAATCTACTAAA+TGG | - | chr5.2:70061620-70061639 | MS.gene29609:intron | 20.0% |
| !!! | TTAAAATGAAAATTTGGTGT+TGG | - | chr5.2:70061244-70061263 | MS.gene29609:intron | 20.0% |
| !!! | TTGCAGGTAATTTTAATTTT+GGG | - | chr5.2:70063990-70064009 | MS.gene29609:intron | 20.0% |
| ! | AAAGAAAATGTTAAGTTTGG+GGG | - | chr5.2:70061088-70061107 | MS.gene29609:intron | 25.0% |
| ! | AAATGTATATCAGATGTTGT+AGG | - | chr5.2:70063915-70063934 | MS.gene29609:intron | 25.0% |
| ! | AACATCATCAACATATTTGT+AGG | + | chr5.2:70063859-70063878 | None:intergenic | 25.0% |
| ! | AACCAAATGTAATTTCAGAA+AGG | + | chr5.2:70060778-70060797 | None:intergenic | 25.0% |
| ! | ATTTACAGAAAGAATGATAC+TGG | - | chr5.2:70062534-70062553 | MS.gene29609:intron | 25.0% |
| ! | CAATAAATGTTCTTCAACAA+TGG | + | chr5.2:70060820-70060839 | None:intergenic | 25.0% |
| ! | CATGAAAAGTAAAACTTTGA+TGG | - | chr5.2:70063058-70063077 | MS.gene29609:CDS | 25.0% |
| ! | CTTTATAGAAGAAATGTCTT+GGG | - | chr5.2:70063466-70063485 | MS.gene29609:intron | 25.0% |
| ! | GTTTCAAACAATTTATCACT+TGG | - | chr5.2:70062033-70062052 | MS.gene29609:intron | 25.0% |
| ! | TATATTTATCTAGCATCACA+AGG | - | chr5.2:70064207-70064226 | MS.gene29609:CDS | 25.0% |
| ! | TATCCATATACTTTGCTTAA+AGG | - | chr5.2:70062646-70062665 | MS.gene29609:intron | 25.0% |
| !! | AAAACTGTATATTTGATGGT+TGG | - | chr5.2:70061533-70061552 | MS.gene29609:intron | 25.0% |
| !! | AACGTAGATTAATGCAATTT+TGG | - | chr5.2:70061115-70061134 | MS.gene29609:intron | 25.0% |
| !! | ATATTGTTATTGTCAAATGG+TGG | - | chr5.2:70060971-70060990 | MS.gene29609:CDS | 25.0% |
| !! | ATTGATTGTTTGTTAACTTC+TGG | - | chr5.2:70063728-70063747 | MS.gene29609:intron | 25.0% |
| !! | CTTTTATTAATAGGTTGCTT+TGG | - | chr5.2:70061711-70061730 | MS.gene29609:intron | 25.0% |
| !! | GTAGATTGATAACATATATC+TGG | - | chr5.2:70061458-70061477 | MS.gene29609:intron | 25.0% |
| !! | GTGATATTGTTATTGTCAAA+TGG | - | chr5.2:70060968-70060987 | MS.gene29609:CDS | 25.0% |
| !! | TCTTTTTGTATTTCTTCACT+TGG | - | chr5.2:70062699-70062718 | MS.gene29609:CDS | 25.0% |
| !! | TTAAAGAACACATTTTCTCA+GGG | - | chr5.2:70064133-70064152 | MS.gene29609:CDS | 25.0% |
| !! | TTTTTCCTGATTGATGTATT+AGG | - | chr5.2:70062333-70062352 | MS.gene29609:intron | 25.0% |
| !!! | CTTGCAGGTAATTTTAATTT+TGG | - | chr5.2:70063989-70064008 | MS.gene29609:intron | 25.0% |
| !!! | GTTTGAAACATATGCTTTTA+TGG | + | chr5.2:70062022-70062041 | None:intergenic | 25.0% |
| !!! | TGCAGGTAATTTTAATTTTG+GGG | - | chr5.2:70063991-70064010 | MS.gene29609:intron | 25.0% |
| !!! | TTCCTTTCTGAAATTACATT+TGG | - | chr5.2:70060773-70060792 | MS.gene29609:intron | 25.0% |
| !!! | TTGATGCATTTTTTAATTGG+TGG | + | chr5.2:70061383-70061402 | None:intergenic | 25.0% |
| AAAATCCCATCTGATATAGA+AGG | - | chr5.2:70063789-70063808 | MS.gene29609:intron | 30.0% | |
| AAATCCCATCTGATATAGAA+GGG | - | chr5.2:70063790-70063809 | MS.gene29609:intron | 30.0% | |
| AAGACAAAAACAATGACACT+TGG | + | chr5.2:70062838-70062857 | None:intergenic | 30.0% | |
| ACAGTTTCAAGAAATTCCTT+TGG | - | chr5.2:70062074-70062093 | MS.gene29609:intron | 30.0% | |
| ACATCGTCAATGTTAAGTTT+GGG | - | chr5.2:70061285-70061304 | MS.gene29609:intron | 30.0% | |
| AGACCTTTAAGCAAAGTATA+TGG | + | chr5.2:70062652-70062671 | None:intergenic | 30.0% | |
| ATCACACATCGATCTATTAA+AGG | + | chr5.2:70062285-70062304 | None:intergenic | 30.0% | |
| ATGAATCTGAGTAACATGTT+TGG | - | chr5.2:70063092-70063111 | MS.gene29609:intron | 30.0% | |
| ATGATTCGTTTATTTGCCTT+TGG | - | chr5.2:70063145-70063164 | MS.gene29609:intron | 30.0% | |
| ATGCAATGTTTGGTACAATT+TGG | - | chr5.2:70063193-70063212 | MS.gene29609:intron | 30.0% | |
| ATGTATCTATTAGTTGAGAG+TGG | - | chr5.2:70063500-70063519 | MS.gene29609:intron | 30.0% | |
| CAAAACAAACTTCAAAGAAC+TGG | + | chr5.2:70061813-70061832 | None:intergenic | 30.0% | |
| CAGATACTTTACTTAAATCC+AGG | - | chr5.2:70062401-70062420 | MS.gene29609:intron | 30.0% | |
| CATAACATAACAAGCTCTTA+CGG | + | chr5.2:70064111-70064130 | None:intergenic | 30.0% | |
| CATATCGTGATAAAAATGTG+GGG | + | chr5.2:70063176-70063195 | None:intergenic | 30.0% | |
| CCAAGACATTTCTTCTATAA+AGG | + | chr5.2:70063468-70063487 | None:intergenic | 30.0% | |
| CCTTTATAGAAGAAATGTCT+TGG | - | chr5.2:70063465-70063484 | MS.gene29609:intron | 30.0% | |
| CTTCAGATTATCAACTGTAA+AGG | + | chr5.2:70063754-70063773 | None:intergenic | 30.0% | |
| CTTCTCGAGAATAAAATTCA+TGG | + | chr5.2:70061945-70061964 | None:intergenic | 30.0% | |
| GCATATCGTGATAAAAATGT+GGG | + | chr5.2:70063177-70063196 | None:intergenic | 30.0% | |
| GTAAAACTCACAAATAGAGT+TGG | + | chr5.2:70061568-70061587 | None:intergenic | 30.0% | |
| TACATCGTCAATGTTAAGTT+TGG | - | chr5.2:70061284-70061303 | MS.gene29609:intron | 30.0% | |
| TATGTCCTAATACATCAATC+AGG | + | chr5.2:70062341-70062360 | None:intergenic | 30.0% | |
| TGAATCTGAGTAACATGTTT+GGG | - | chr5.2:70063093-70063112 | MS.gene29609:intron | 30.0% | |
| TGCATATCGTGATAAAAATG+TGG | + | chr5.2:70063178-70063197 | None:intergenic | 30.0% | |
| TGTCAACAGTCAAATGTATT+GGG | + | chr5.2:70061975-70061994 | None:intergenic | 30.0% | |
| TTATACTGACACAACACTAA+TGG | + | chr5.2:70063637-70063656 | None:intergenic | 30.0% | |
| TTATCACGATATGCAATGTT+TGG | - | chr5.2:70063183-70063202 | MS.gene29609:intron | 30.0% | |
| TTGCTTAAAGGTCTAAATCT+AGG | - | chr5.2:70062658-70062677 | MS.gene29609:intron | 30.0% | |
| ! | ATGTTAATTTCTCTGGCTTA+AGG | + | chr5.2:70060849-70060868 | None:intergenic | 30.0% |
| ! | ATTTTCCTTTCCTTGTGAAA+TGG | - | chr5.2:70062935-70062954 | MS.gene29609:intron | 30.0% |
| ! | CTGGATTTAAGTAAAGTATC+TGG | + | chr5.2:70062403-70062422 | None:intergenic | 30.0% |
| ! | GTATAAGTCCCACATATTTT+AGG | - | chr5.2:70063229-70063248 | MS.gene29609:intron | 30.0% |
| ! | GTTAAAGAACACATTTTCTC+AGG | - | chr5.2:70064132-70064151 | MS.gene29609:CDS | 30.0% |
| ! | TAGCTAGTGTCATTGTTATT+AGG | - | chr5.2:70062582-70062601 | MS.gene29609:intron | 30.0% |
| ! | TTTTCCTTTCCTTGTGAAAT+GGG | - | chr5.2:70062936-70062955 | MS.gene29609:intron | 30.0% |
| ! | TTTTGTATTTCTTCACTTGG+TGG | - | chr5.2:70062702-70062721 | MS.gene29609:CDS | 30.0% |
| !! | AATGAGTTTTTATTTCGTGC+AGG | - | chr5.2:70061878-70061897 | MS.gene29609:intron | 30.0% |
| !! | ATTTCCCAATTTTGTTGTCT+GGG | + | chr5.2:70063899-70063918 | None:intergenic | 30.0% |
| !! | CAAATATGTTGATGATGTTG+TGG | - | chr5.2:70063860-70063879 | MS.gene29609:intron | 30.0% |
| !! | TAATTTGTAGCGCTTTGAAA+TGG | - | chr5.2:70063654-70063673 | MS.gene29609:intron | 30.0% |
| !!! | TGGCAGATTACTACTTTTTT+TGG | - | chr5.2:70061315-70061334 | MS.gene29609:intron | 30.0% |
| AACAGTCAAATGTATTGGGT+TGG | + | chr5.2:70061971-70061990 | None:intergenic | 35.0% | |
| AATCCCAAGGAAGTTATAGT+TGG | - | chr5.2:70061778-70061797 | MS.gene29609:intron | 35.0% | |
| AATTCCTTTGGATCTTCGTA+TGG | - | chr5.2:70062086-70062105 | MS.gene29609:intron | 35.0% | |
| ATACATTTGACTGTTGACAC+AGG | - | chr5.2:70061976-70061995 | MS.gene29609:intron | 35.0% | |
| ATCGTCAATGTTAAGTTTGG+GGG | - | chr5.2:70061287-70061306 | MS.gene29609:intron | 35.0% | |
| ATCTGTGTCTCGTTTGTATT+TGG | - | chr5.2:70062897-70062916 | MS.gene29609:intron | 35.0% | |
| ATTTCAGAAAGGAATGCATG+TGG | + | chr5.2:70060767-70060786 | None:intergenic | 35.0% | |
| ATTTGAATTAGCAGCGAGTA+TGG | + | chr5.2:70061193-70061212 | None:intergenic | 35.0% | |
| CACAAAGTGTATTTGCAATC+AGG | - | chr5.2:70062999-70063018 | MS.gene29609:intron | 35.0% | |
| CATCCAACTATAACTTCCTT+GGG | + | chr5.2:70061784-70061803 | None:intergenic | 35.0% | |
| CATCGTCAATGTTAAGTTTG+GGG | - | chr5.2:70061286-70061305 | MS.gene29609:intron | 35.0% | |
| GAAGCAATGTTGTTGAATAG+CGG | - | chr5.2:70060887-70060906 | MS.gene29609:CDS | 35.0% | |
| GGCGAGTTTAGAAAAATCAT+GGG | + | chr5.2:70061362-70061381 | None:intergenic | 35.0% | |
| GGGATAGTAACATATTATGG+TGG | + | chr5.2:70061747-70061766 | None:intergenic | 35.0% | |
| GGTCCAGCATTAAAAAAGTA+AGG | + | chr5.2:70061593-70061612 | None:intergenic | 35.0% | |
| GGTGGGATAGTAACATATTA+TGG | + | chr5.2:70061750-70061769 | None:intergenic | 35.0% | |
| GTATGAATTGCGGATATCAA+CGG | + | chr5.2:70060700-70060719 | None:intergenic | 35.0% | |
| GTCTTACTCTTAAAACCATC+TGG | + | chr5.2:70063305-70063324 | None:intergenic | 35.0% | |
| GTGTCAACAGTCAAATGTAT+TGG | + | chr5.2:70061976-70061995 | None:intergenic | 35.0% | |
| GTGTGATATTGTACTAGGTT+AGG | - | chr5.2:70062298-70062317 | MS.gene29609:intron | 35.0% | |
| GTTGGATTAATCACAGATTG+TGG | + | chr5.2:70061042-70061061 | None:intergenic | 35.0% | |
| TACAGAAAGAATGATACCTG+AGG | - | chr5.2:70062792-70062811 | MS.gene29609:CDS | 35.0% | |
| TCGATGTGTGATATTGTACT+AGG | - | chr5.2:70062293-70062312 | MS.gene29609:intron | 35.0% | |
| TCGTTTGTATTTGGGAAAAC+TGG | - | chr5.2:70062906-70062925 | MS.gene29609:intron | 35.0% | |
| TCTGTGATTAATCCAACAGA+TGG | - | chr5.2:70061045-70061064 | MS.gene29609:intron | 35.0% | |
| TCTGTGTCTCGTTTGTATTT+GGG | - | chr5.2:70062898-70062917 | MS.gene29609:intron | 35.0% | |
| TGCTTGCTTTCATCAATTCA+TGG | - | chr5.2:70062227-70062246 | MS.gene29609:intron | 35.0% | |
| TGGCGAGTTTAGAAAAATCA+TGG | + | chr5.2:70061363-70061382 | None:intergenic | 35.0% | |
| TGTTAAGTTTGGGGGAATTA+TGG | - | chr5.2:70061096-70061115 | MS.gene29609:intron | 35.0% | |
| TTACTCTTAAAACCATCTGG+AGG | + | chr5.2:70063302-70063321 | None:intergenic | 35.0% | |
| TTCGTTTATTTGCCTTTGGA+AGG | - | chr5.2:70063149-70063168 | MS.gene29609:intron | 35.0% | |
| TTGACCCAGACAACAAAATT+GGG | - | chr5.2:70063892-70063911 | MS.gene29609:intron | 35.0% | |
| TTGTTGAATAGCGGCTAAAT+CGG | - | chr5.2:70060896-70060915 | MS.gene29609:CDS | 35.0% | |
| ! | AAATGCCAATGAGGTCATTT+TGG | + | chr5.2:70063949-70063968 | None:intergenic | 35.0% |
| ! | ACACATTTTCTCAGGGTTTT+TGG | - | chr5.2:70064140-70064159 | MS.gene29609:CDS | 35.0% |
| ! | CATTGGATGTACGTATTGAT+TGG | - | chr5.2:70062122-70062141 | MS.gene29609:intron | 35.0% |
| !! | AATGCCAATGAGGTCATTTT+GGG | + | chr5.2:70063948-70063967 | None:intergenic | 35.0% |
| !! | ATGTTGATGATGTTGTGGAA+GGG | - | chr5.2:70063865-70063884 | MS.gene29609:intron | 35.0% |
| !! | CATTTCCCAATTTTGTTGTC+TGG | + | chr5.2:70063900-70063919 | None:intergenic | 35.0% |
| !! | CTCTTTTAAAGGGGTTTTGA+GGG | - | chr5.2:70063332-70063351 | MS.gene29609:intron | 35.0% |
| !! | TATGTTGATGATGTTGTGGA+AGG | - | chr5.2:70063864-70063883 | MS.gene29609:intron | 35.0% |
| !! | TCTCTTTTAAAGGGGTTTTG+AGG | - | chr5.2:70063331-70063350 | MS.gene29609:intron | 35.0% |
| !! | TGAAAATTTGGTGTTGGATG+TGG | - | chr5.2:70061250-70061269 | MS.gene29609:intron | 35.0% |
| !! | TTGGTACAATTTGGTGCATT+GGG | - | chr5.2:70063202-70063221 | MS.gene29609:intron | 35.0% |
| !! | TTTGGTACAATTTGGTGCAT+TGG | - | chr5.2:70063201-70063220 | MS.gene29609:intron | 35.0% |
| !!! | ATTTTGGGGTTATGTTGTAG+TGG | - | chr5.2:70064005-70064024 | MS.gene29609:intron | 35.0% |
| !!! | CAGCCTTACTTTTTTAATGC+TGG | - | chr5.2:70061587-70061606 | MS.gene29609:intron | 35.0% |
| !!! | CTTCACTTGGTGGTTTTTTA+TGG | - | chr5.2:70062712-70062731 | MS.gene29609:CDS | 35.0% |
| !!! | TCAGTTTTTGGTCATGATCA+AGG | + | chr5.2:70062878-70062897 | None:intergenic | 35.0% |
| AAGCTCATCAAATGCCAATG+AGG | + | chr5.2:70063958-70063977 | None:intergenic | 40.0% | |
| AAGTCCCATTTCACAAGGAA+AGG | + | chr5.2:70062943-70062962 | None:intergenic | 40.0% | |
| AATGCATGTGGAGAGAGTAA+AGG | + | chr5.2:70060755-70060774 | None:intergenic | 40.0% | |
| ACACAGAAGAGAATACAGAG+AGG | + | chr5.2:70063432-70063451 | None:intergenic | 40.0% | |
| AGAGTAAAGGACCTGATCAA+CGG | + | chr5.2:70060742-70060761 | None:intergenic | 40.0% | |
| AGCCTCAATGACACATCTAT+TGG | - | chr5.2:70063818-70063837 | MS.gene29609:intron | 40.0% | |
| ATTGTGAATGACATTGCCTC+AGG | + | chr5.2:70062811-70062830 | None:intergenic | 40.0% | |
| ATTTCGTGCAGGTATTCAAC+TGG | - | chr5.2:70061889-70061908 | MS.gene29609:intron | 40.0% | |
| CAGAAAGAATGATACTGGAC+TGG | - | chr5.2:70062539-70062558 | MS.gene29609:intron | 40.0% | |
| CAGATGTTGAAGATAACGAG+AGG | + | chr5.2:70060600-70060619 | None:intergenic | 40.0% | |
| CATATATCTGGTGTAGCATG+TGG | - | chr5.2:70061470-70061489 | MS.gene29609:intron | 40.0% | |
| CCAAAATATTCAACCTGCAG+CGG | + | chr5.2:70062976-70062995 | None:intergenic | 40.0% | |
| CCAAGGAAGTTATAGTTGGA+TGG | - | chr5.2:70061782-70061801 | MS.gene29609:intron | 40.0% | |
| CCATCCAACTATAACTTCCT+TGG | + | chr5.2:70061785-70061804 | None:intergenic | 40.0% | |
| CCATCCCTTCTATATCAGAT+GGG | + | chr5.2:70063797-70063816 | None:intergenic | 40.0% | |
| CTATAACGCGATATAGCTAG+CGG | - | chr5.2:70060994-70061013 | MS.gene29609:CDS | 40.0% | |
| CTTCTTCACAGACCTTATCT+GGG | - | chr5.2:70060565-70060584 | MS.gene29609:CDS | 40.0% | |
| GAAGAGAATACAGAGAGGAA+AGG | + | chr5.2:70063427-70063446 | None:intergenic | 40.0% | |
| GTGATTAATCCAACAGATGG+TGG | - | chr5.2:70061048-70061067 | MS.gene29609:intron | 40.0% | |
| GTTATTAGGACAGAGTGACT+TGG | - | chr5.2:70062596-70062615 | MS.gene29609:intron | 40.0% | |
| GTTGACCCAGACAACAAAAT+TGG | - | chr5.2:70063891-70063910 | MS.gene29609:intron | 40.0% | |
| TATACAGTTCCACCATCTGT+TGG | + | chr5.2:70061060-70061079 | None:intergenic | 40.0% | |
| TCAACCATACGAAGATCCAA+AGG | + | chr5.2:70062093-70062112 | None:intergenic | 40.0% | |
| TCCATCCCTTCTATATCAGA+TGG | + | chr5.2:70063798-70063817 | None:intergenic | 40.0% | |
| TCTTCTTCACAGACCTTATC+TGG | - | chr5.2:70060564-70060583 | MS.gene29609:CDS | 40.0% | |
| TTTCCTTGTGAAATGGGACT+TGG | - | chr5.2:70062942-70062961 | MS.gene29609:intron | 40.0% | |
| TTTGTTAAAGCTCCAGAGTG+TGG | + | chr5.2:70061147-70061166 | None:intergenic | 40.0% | |
| ! | AAAGAATGATACTGGACTGG+AGG | - | chr5.2:70062542-70062561 | MS.gene29609:intron | 40.0% |
| ! | AACATGTTTGGGTTTGTCTC+AGG | - | chr5.2:70063104-70063123 | MS.gene29609:intron | 40.0% |
| ! | AATGACACATCTATTGGCCT+TGG | - | chr5.2:70063824-70063843 | MS.gene29609:intron | 40.0% |
| ! | ACGAGACACAGATCAGTTTT+TGG | + | chr5.2:70062890-70062909 | None:intergenic | 40.0% |
| ! | CTGGAGCTTTAACAAACTTG+CGG | - | chr5.2:70061151-70061170 | MS.gene29609:intron | 40.0% |
| ! | TTTGTAGGTGTCATCAACCA+AGG | + | chr5.2:70063844-70063863 | None:intergenic | 40.0% |
| !! | CAATGAGGTCATTTTGGGAA+GGG | + | chr5.2:70063943-70063962 | None:intergenic | 40.0% |
| !! | CAGTGTTCAATTTTTCAGCC+AGG | + | chr5.2:70064244-70064263 | None:intergenic | 40.0% |
| !! | CTTCCTTGGGATTCACTTTT+TGG | + | chr5.2:70061771-70061790 | None:intergenic | 40.0% |
| !! | TTTTCAGGATCACTTGCTCA+TGG | - | chr5.2:70064184-70064203 | MS.gene29609:CDS | 40.0% |
| !!! | AAGAGTGTCTCATGGTTTTC+AGG | - | chr5.2:70064169-70064188 | MS.gene29609:CDS | 40.0% |
| !!! | CTTGGGATTCACTTTTTGGT+GGG | + | chr5.2:70061767-70061786 | None:intergenic | 40.0% |
| !!! | TTAAAGGGGTTTTGAGGGAT+TGG | - | chr5.2:70063337-70063356 | MS.gene29609:intron | 40.0% |
| AAAATGTGGGGACCTTCCAA+AGG | + | chr5.2:70063164-70063183 | None:intergenic | 45.0% | |
| AACCATGAGACACTCTTGTC+AGG | + | chr5.2:70064166-70064185 | None:intergenic | 45.0% | |
| ACAGGATTTGCAGATGGAGA+GGG | - | chr5.2:70061994-70062013 | MS.gene29609:intron | 45.0% | |
| AGGATGAACCTTCCCAGATA+AGG | + | chr5.2:70060580-70060599 | None:intergenic | 45.0% | |
| CCACCAAAAAGTGAATCCCA+AGG | - | chr5.2:70061765-70061784 | MS.gene29609:intron | 45.0% | |
| CCCATCTGATATAGAAGGGA+TGG | - | chr5.2:70063794-70063813 | MS.gene29609:intron | 45.0% | |
| CCTTCCCAAAATGACCTCAT+TGG | - | chr5.2:70063941-70063960 | MS.gene29609:intron | 45.0% | |
| GAAATGTCTTGGGTCTACTG+TGG | - | chr5.2:70063476-70063495 | MS.gene29609:intron | 45.0% | |
| GATCCAAGTCCCATTTCACA+AGG | + | chr5.2:70062948-70062967 | None:intergenic | 45.0% | |
| GTTGACACAGGATTTGCAGA+TGG | - | chr5.2:70061988-70062007 | MS.gene29609:intron | 45.0% | |
| TTCACAGACCTTATCTGGGA+AGG | - | chr5.2:70060569-70060588 | MS.gene29609:CDS | 45.0% | |
| ! | ATGGATTAATGCACTGCCAC+CGG | + | chr5.2:70061926-70061945 | None:intergenic | 45.0% |
| ! | GGCCAATAGATGTGTCATTG+AGG | + | chr5.2:70063823-70063842 | None:intergenic | 45.0% |
| ! | TGATCAACGGACTCATTGTG+CGG | + | chr5.2:70060729-70060748 | None:intergenic | 45.0% |
| ! | TGATGATGCAAAAGAGAGCC+TGG | + | chr5.2:70062422-70062441 | None:intergenic | 45.0% |
| ! | TGCAGGTATTCAACTGGTCT+TGG | - | chr5.2:70061895-70061914 | MS.gene29609:intron | 45.0% |
| ! | TTTTGGCAAAAGCCACACTC+TGG | - | chr5.2:70061132-70061151 | MS.gene29609:intron | 45.0% |
| !! | CCAATGAGGTCATTTTGGGA+AGG | + | chr5.2:70063944-70063963 | None:intergenic | 45.0% |
| !! | CCGCTGCAGGTTGAATATTT+TGG | - | chr5.2:70062973-70062992 | MS.gene29609:intron | 45.0% |
| !! | GTACAATTTGGTGCATTGGG+TGG | - | chr5.2:70063205-70063224 | MS.gene29609:intron | 45.0% |
| !! | TCAACTGGTCTTGGAGTAAC+CGG | - | chr5.2:70061904-70061923 | MS.gene29609:intron | 45.0% |
| !!! | CCTTGGGATTCACTTTTTGG+TGG | + | chr5.2:70061768-70061787 | None:intergenic | 45.0% |
| !!! | GGTTTTAAGAGTAAGACGCG+CGG | - | chr5.2:70063308-70063327 | MS.gene29609:intron | 45.0% |
| !! | AATAAATTTAATAAATTGTA+GGG | - | chr5.2:70064044-70064063 | MS.gene29609:intron | 5.0% |
| AATATTCAACCTGCAGCGGC+AGG | + | chr5.2:70062972-70062991 | None:intergenic | 50.0% | |
| ATGGTTGAAGCTGAGCGCAT+TGG | - | chr5.2:70062105-70062124 | MS.gene29609:intron | 50.0% | |
| CACAGGATTTGCAGATGGAG+AGG | - | chr5.2:70061993-70062012 | MS.gene29609:intron | 50.0% | |
| GCACAATGAGTCCGTTGATC+AGG | - | chr5.2:70060728-70060747 | MS.gene29609:intron | 50.0% | |
| GCTTGTGAATGACAGCTTGC+AGG | - | chr5.2:70063974-70063993 | MS.gene29609:intron | 50.0% | |
| TTAGGTGTTTGGCCTCCAGA+TGG | - | chr5.2:70063287-70063306 | MS.gene29609:intron | 50.0% | |
| ! | AACGGACTCATTGTGCGGAA+CGG | + | chr5.2:70060724-70060743 | None:intergenic | 50.0% |
| ! | AGACGCGCGGTCTCTTTTAA+AGG | - | chr5.2:70063321-70063340 | MS.gene29609:intron | 50.0% |
| ! | GACGCGCGGTCTCTTTTAAA+GGG | - | chr5.2:70063322-70063341 | MS.gene29609:intron | 50.0% |
| !! | ACGCGCGGTCTCTTTTAAAG+GGG | - | chr5.2:70063323-70063342 | MS.gene29609:intron | 50.0% |
| CGGATATCAACGGTTCCGTC+GGG | + | chr5.2:70060690-70060709 | None:intergenic | 55.0% | |
| GCGGAACGGCGTATGAATTG+CGG | + | chr5.2:70060710-70060729 | None:intergenic | 55.0% | |
| GCGGATATCAACGGTTCCGT+CGG | + | chr5.2:70060691-70060710 | None:intergenic | 55.0% | |
| GGATATCAACGGTTCCGTCG+GGG | + | chr5.2:70060689-70060708 | None:intergenic | 55.0% | |
| !! | ACTGGTCTTGGAGTAACCGG+TGG | - | chr5.2:70061907-70061926 | MS.gene29609:intron | 55.0% |
| !! | GGCCTGACAAGAGTGTCTCA+TGG | - | chr5.2:70064161-70064180 | MS.gene29609:CDS | 55.0% |
| AACGGTTCCGTCGGGGAGAA+CGG | + | chr5.2:70060682-70060701 | None:intergenic | 60.0% | |
| CACAAGGACACAGCTCAGCC+TGG | - | chr5.2:70064223-70064242 | MS.gene29609:CDS | 60.0% | |
| TGTCCGTCGTCCTGACCAAG+CGG | - | chr5.2:70060629-70060648 | MS.gene29609:intron | 60.0% | |
| ATGACGCGCTCCGCTTGGTC+AGG | + | chr5.2:70060642-70060661 | None:intergenic | 65.0% | |
| CGCGTCATCGGAACGCTCCT+CGG | - | chr5.2:70060654-70060673 | MS.gene29609:intron | 65.0% | |
| CTCGGTTCCGTTCTCCCCGA+CGG | - | chr5.2:70060672-70060691 | MS.gene29609:intron | 65.0% | |
| CTTGGATCACCTGCCGCTGC+AGG | - | chr5.2:70062960-70062979 | MS.gene29609:intron | 65.0% | |
| GACCAAGCGGAGCGCGTCAT+CGG | - | chr5.2:70060642-70060661 | MS.gene29609:intron | 65.0% | |
| GCTCCGCTTGGTCAGGACGA+CGG | + | chr5.2:70060635-70060654 | None:intergenic | 65.0% | |
| TTCCGATGACGCGCTCCGCT+TGG | + | chr5.2:70060647-70060666 | None:intergenic | 65.0% | |
| CGTCGGGGAGAACGGAACCG+AGG | + | chr5.2:70060674-70060693 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 70060531 | 70064280 | 70060531 | ID=MS.gene29609 |
| chr5.2 | mRNA | 70060531 | 70064280 | 70060531 | ID=MS.gene29609.t1;Parent=MS.gene29609 |
| chr5.2 | exon | 70064062 | 70064280 | 70064062 | ID=MS.gene29609.t1.exon1;Parent=MS.gene29609.t1 |
| chr5.2 | CDS | 70064062 | 70064280 | 70064062 | ID=cds.MS.gene29609.t1;Parent=MS.gene29609.t1 |
| chr5.2 | exon | 70063008 | 70063087 | 70063008 | ID=MS.gene29609.t1.exon2;Parent=MS.gene29609.t1 |
| chr5.2 | CDS | 70063008 | 70063087 | 70063008 | ID=cds.MS.gene29609.t1;Parent=MS.gene29609.t1 |
| chr5.2 | exon | 70062682 | 70062911 | 70062682 | ID=MS.gene29609.t1.exon3;Parent=MS.gene29609.t1 |
| chr5.2 | CDS | 70062682 | 70062911 | 70062682 | ID=cds.MS.gene29609.t1;Parent=MS.gene29609.t1 |
| chr5.2 | exon | 70060816 | 70061051 | 70060816 | ID=MS.gene29609.t1.exon4;Parent=MS.gene29609.t1 |
| chr5.2 | CDS | 70060816 | 70061051 | 70060816 | ID=cds.MS.gene29609.t1;Parent=MS.gene29609.t1 |
| chr5.2 | exon | 70060531 | 70060620 | 70060531 | ID=MS.gene29609.t1.exon5;Parent=MS.gene29609.t1 |
| chr5.2 | CDS | 70060531 | 70060620 | 70060531 | ID=cds.MS.gene29609.t1;Parent=MS.gene29609.t1 |
| Gene Sequence |
| Protein sequence |
