Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29612.t1 | XP_003616591.1 | 95.1 | 305 | 7 | 1 | 1 | 305 | 120 | 416 | 6.30E-111 | 410.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29612.t1 | G7KGW7 | 95.1 | 305 | 7 | 1 | 1 | 305 | 120 | 416 | 4.6e-111 | 410.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049293 | MS.gene29612 | -0.82852 | 8.59E-55 | -1.69E-46 |
| MS.gene049825 | MS.gene29612 | 0.805022 | 1.63E-49 | -1.69E-46 |
| MS.gene050303 | MS.gene29612 | 0.810981 | 8.79E-51 | -1.69E-46 |
| MS.gene051678 | MS.gene29612 | 0.81419 | 1.75E-51 | -1.69E-46 |
| MS.gene052176 | MS.gene29612 | 0.834801 | 2.43E-56 | -1.69E-46 |
| MS.gene052302 | MS.gene29612 | 0.822259 | 2.61E-53 | -1.69E-46 |
| MS.gene052309 | MS.gene29612 | -0.861621 | 9.02E-64 | -1.69E-46 |
| MS.gene052358 | MS.gene29612 | -0.833212 | 6.07E-56 | -1.69E-46 |
| MS.gene052376 | MS.gene29612 | 0.82035 | 7.18E-53 | -1.69E-46 |
| MS.gene053294 | MS.gene29612 | 0.846475 | 2.12E-59 | -1.69E-46 |
| MS.gene053401 | MS.gene29612 | 0.805221 | 1.48E-49 | -1.69E-46 |
| MS.gene053963 | MS.gene29612 | 0.826891 | 2.11E-54 | -1.69E-46 |
| MS.gene05548 | MS.gene29612 | 0.834515 | 2.87E-56 | -1.69E-46 |
| MS.gene055808 | MS.gene29612 | 0.816101 | 6.58E-52 | -1.69E-46 |
| MS.gene056091 | MS.gene29612 | 0.845045 | 5.19E-59 | -1.69E-46 |
| MS.gene057079 | MS.gene29612 | 0.877693 | 5.12E-69 | -1.69E-46 |
| MS.gene057555 | MS.gene29612 | 0.836566 | 8.68E-57 | -1.69E-46 |
| MS.gene05795 | MS.gene29612 | 0.803784 | 2.95E-49 | -1.69E-46 |
| MS.gene058498 | MS.gene29612 | 0.813047 | 3.12E-51 | -1.69E-46 |
| MS.gene05954 | MS.gene29612 | 0.842915 | 1.93E-58 | -1.69E-46 |
| MS.gene060586 | MS.gene29612 | 0.803389 | 3.57E-49 | -1.69E-46 |
| MS.gene060879 | MS.gene29612 | 0.839679 | 1.37E-57 | -1.69E-46 |
| MS.gene061040 | MS.gene29612 | -0.837334 | 5.53E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29612.t1 | MTR_5g082130 | 94.754 | 305 | 8 | 1 | 1 | 305 | 120 | 416 | 0.0 | 585 |
| MS.gene29612.t1 | MTR_3g463450 | 40.793 | 353 | 146 | 5 | 1 | 299 | 165 | 508 | 9.97e-78 | 246 |
| MS.gene29612.t1 | MTR_2g103795 | 40.187 | 107 | 64 | 0 | 185 | 291 | 137 | 243 | 6.59e-18 | 82.4 |
| MS.gene29612.t1 | MTR_7g098450 | 31.073 | 177 | 116 | 2 | 112 | 285 | 174 | 347 | 1.01e-17 | 82.8 |
| MS.gene29612.t1 | MTR_7g098450 | 31.073 | 177 | 116 | 2 | 112 | 285 | 151 | 324 | 1.26e-17 | 82.4 |
| MS.gene29612.t1 | MTR_7g099260 | 35.849 | 106 | 66 | 1 | 190 | 295 | 240 | 343 | 1.42e-15 | 76.6 |
| MS.gene29612.t1 | MTR_4g114690 | 38.679 | 106 | 65 | 0 | 178 | 283 | 153 | 258 | 1.16e-14 | 73.2 |
| MS.gene29612.t1 | MTR_4g010250 | 36.449 | 107 | 66 | 2 | 185 | 290 | 122 | 227 | 3.13e-14 | 71.6 |
| MS.gene29612.t1 | MTR_1g073230 | 36.458 | 96 | 61 | 0 | 190 | 285 | 276 | 371 | 5.38e-12 | 66.2 |
| MS.gene29612.t1 | MTR_2g103795 | 40.230 | 87 | 52 | 0 | 185 | 271 | 137 | 223 | 5.45e-12 | 64.7 |
| MS.gene29612.t1 | MTR_5g029910 | 33.684 | 95 | 63 | 0 | 189 | 283 | 124 | 218 | 7.80e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29612.t1 | AT3G47080 | 39.210 | 329 | 153 | 7 | 1 | 299 | 198 | 509 | 2.70e-70 | 226 |
| MS.gene29612.t1 | AT2G29670 | 47.879 | 165 | 83 | 1 | 135 | 299 | 368 | 529 | 2.22e-45 | 161 |
| MS.gene29612.t1 | AT2G29670 | 52.252 | 111 | 52 | 1 | 1 | 111 | 164 | 273 | 1.05e-30 | 121 |
| MS.gene29612.t1 | AT2G29670 | 47.879 | 165 | 83 | 1 | 135 | 299 | 368 | 529 | 2.22e-45 | 161 |
| MS.gene29612.t1 | AT2G29670 | 52.252 | 111 | 52 | 1 | 1 | 111 | 164 | 273 | 1.05e-30 | 121 |
| MS.gene29612.t1 | AT1G07280 | 47.561 | 164 | 77 | 2 | 135 | 298 | 389 | 543 | 3.02e-42 | 153 |
| MS.gene29612.t1 | AT1G07280 | 31.329 | 316 | 178 | 6 | 1 | 283 | 187 | 496 | 3.29e-36 | 136 |
| MS.gene29612.t1 | AT1G07280 | 47.561 | 164 | 77 | 2 | 135 | 298 | 389 | 543 | 3.02e-42 | 153 |
| MS.gene29612.t1 | AT1G07280 | 31.329 | 316 | 178 | 6 | 1 | 283 | 187 | 496 | 3.29e-36 | 136 |
| MS.gene29612.t1 | AT1G07280 | 47.561 | 164 | 77 | 2 | 135 | 298 | 389 | 543 | 3.02e-42 | 153 |
| MS.gene29612.t1 | AT1G07280 | 31.329 | 316 | 178 | 6 | 1 | 283 | 187 | 496 | 3.29e-36 | 136 |
| MS.gene29612.t1 | AT1G07280 | 31.379 | 290 | 177 | 5 | 1 | 283 | 187 | 461 | 2.95e-34 | 130 |
| MS.gene29612.t1 | AT1G07280 | 47.191 | 89 | 41 | 1 | 135 | 223 | 389 | 471 | 7.32e-17 | 81.3 |
| MS.gene29612.t1 | AT4G17940 | 37.255 | 102 | 64 | 0 | 182 | 283 | 145 | 246 | 1.90e-15 | 75.5 |
| MS.gene29612.t1 | AT5G20190 | 40.404 | 99 | 59 | 0 | 187 | 285 | 156 | 254 | 1.39e-14 | 73.2 |
| MS.gene29612.t1 | AT1G80130 | 38.384 | 99 | 61 | 0 | 185 | 283 | 163 | 261 | 1.82e-13 | 70.1 |
| MS.gene29612.t1 | AT4G32340 | 38.384 | 99 | 60 | 1 | 188 | 285 | 111 | 209 | 1.25e-11 | 63.9 |
Find 52 sgRNAs with CRISPR-Local
Find 85 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTGGATAAGAAAGGATAAT+TGG | 0.189834 | 5.2:-70125776 | MS.gene29612:CDS |
| AGAATTGAGGGGTGAGGATT+TGG | 0.196047 | 5.2:-70126899 | MS.gene29612:CDS |
| AACTCTTATGGTTGATGTTA+TGG | 0.249882 | 5.2:-70127115 | MS.gene29612:CDS |
| CAGTGAAACACCAACTCTTA+TGG | 0.277824 | 5.2:-70127127 | MS.gene29612:CDS |
| CAAAGTATGCTAGTTTCCTT+TGG | 0.340397 | 5.2:-70125692 | MS.gene29612:CDS |
| ATTTGTTTGGTTGTTTCAAC+AGG | 0.342400 | 5.2:-70127154 | MS.gene29612:CDS |
| CAAGCATTGGAAGCAGATCC+TGG | 0.366615 | 5.2:-70125732 | MS.gene29612:CDS |
| CCTTCAATCTCCACAGAAAC+AGG | 0.376600 | 5.2:+70126847 | None:intergenic |
| AAGTTATCTAATTCTTCTAT+AGG | 0.388681 | 5.2:+70125633 | None:intergenic |
| AAAGTTGTGGAATTCTTTGT+TGG | 0.394009 | 5.2:-70126944 | MS.gene29612:CDS |
| AAGAAGTTACAATTAGAAGA+AGG | 0.410886 | 5.2:-70127348 | MS.gene29612:CDS |
| CCTGTTTCTGTGGAGATTGA+AGG | 0.415093 | 5.2:-70126847 | MS.gene29612:CDS |
| GTGGATAAGAAAGGATAATT+GGG | 0.419900 | 5.2:-70125775 | MS.gene29612:CDS |
| AAATGGATGATTCATTTGTT+TGG | 0.426457 | 5.2:-70127167 | MS.gene29612:CDS |
| CTACAATATGCTTCAGCCTC+TGG | 0.429399 | 5.2:+70125816 | None:intergenic |
| TTTCTTGTTGTGGATAAGAA+AGG | 0.430860 | 5.2:-70125784 | MS.gene29612:CDS |
| TAACAACAATAACACTGTTA+AGG | 0.439226 | 5.2:-70127058 | MS.gene29612:CDS |
| CAAACAAGGGAGTTACTTTG+TGG | 0.448949 | 5.2:-70127228 | MS.gene29612:CDS |
| TGAAGACTTGGAAAGTGTTA+TGG | 0.456088 | 5.2:-70127205 | MS.gene29612:CDS |
| GGTTAAGCTAAATAGAGAAA+TGG | 0.459163 | 5.2:-70127184 | MS.gene29612:CDS |
| GTTTCTCTTCCTTGTCATGA+AGG | 0.469141 | 5.2:-70126728 | MS.gene29612:CDS |
| GTTACTTTGTGGTGAAGACT+TGG | 0.471945 | 5.2:-70127217 | MS.gene29612:CDS |
| AAAGATGCAAAGAGAATTGA+GGG | 0.474427 | 5.2:-70126911 | MS.gene29612:CDS |
| GCTAGTTTCCTTTGGAACAC+TGG | 0.475032 | 5.2:-70125684 | MS.gene29612:CDS |
| TCAAGATGAGTGTGTAAAGA+AGG | 0.482644 | 5.2:-70126986 | MS.gene29612:CDS |
| GACAGAAGAAGTGAATTGTA+AGG | 0.482870 | 5.2:+70126763 | None:intergenic |
| AAAATCATGCTTTGCAAACA+AGG | 0.483766 | 5.2:-70127242 | MS.gene29612:CDS |
| GATAAATAGTAAGTGTTCCC+AGG | 0.494753 | 5.2:+70125714 | None:intergenic |
| ACTTCATTCATCAATGATGA+AGG | 0.496954 | 5.2:+70127027 | None:intergenic |
| GTTGTGGAATTCTTTGTTGG+AGG | 0.499754 | 5.2:-70126941 | MS.gene29612:CDS |
| GTTTCTGAGTCCTGTTTCTG+TGG | 0.503600 | 5.2:-70126857 | MS.gene29612:CDS |
| CTGTTTCTGTGGAGATTGAA+GGG | 0.509829 | 5.2:-70126846 | MS.gene29612:CDS |
| CTTGTCATGAAGGACAATGA+TGG | 0.518352 | 5.2:-70126718 | MS.gene29612:CDS |
| GCAAAGAGAATTGAGGGGTG+AGG | 0.519978 | 5.2:-70126905 | MS.gene29612:CDS |
| CAAAGATGCAAAGAGAATTG+AGG | 0.524128 | 5.2:-70126912 | MS.gene29612:CDS |
| ACTGAGATATCTACAAGCAT+TGG | 0.527966 | 5.2:-70125745 | MS.gene29612:CDS |
| GATTGAAGGGGATCAATATG+AGG | 0.534382 | 5.2:-70126833 | MS.gene29612:CDS |
| CAGAAGAGGAAGAAAAGTTG+TGG | 0.546207 | 5.2:-70126957 | MS.gene29612:CDS |
| CTACAAACAATCAGTGCTAG+TGG | 0.552197 | 5.2:-70125844 | MS.gene29612:CDS |
| GATATGCTGATTTCTTGTTG+TGG | 0.552344 | 5.2:-70125794 | MS.gene29612:CDS |
| GTTGTCCACCAGTGTTCCAA+AGG | 0.555476 | 5.2:+70125676 | None:intergenic |
| TTGTCATGAAGGACAATGAT+GGG | 0.556695 | 5.2:-70126717 | MS.gene29612:intron |
| AGTTTCCTTTGGAACACTGG+TGG | 0.570615 | 5.2:-70125681 | MS.gene29612:CDS |
| AAAGAAGGAGTTAACAGAAG+AGG | 0.575932 | 5.2:-70126971 | MS.gene29612:CDS |
| AAGCATTGGAAGCAGATCCT+GGG | 0.582991 | 5.2:-70125731 | MS.gene29612:CDS |
| CATCATTGTCCTTCATGACA+AGG | 0.600117 | 5.2:+70126719 | None:intergenic |
| TGTTTCTGTGGAGATTGAAG+GGG | 0.609145 | 5.2:-70126845 | MS.gene29612:CDS |
| ATAACATCAACCATAAGAGT+TGG | 0.609821 | 5.2:+70127117 | None:intergenic |
| AAATCATGCTTTGCAAACAA+GGG | 0.615943 | 5.2:-70127241 | MS.gene29612:CDS |
| AGTGCTAGTGGAGTCACCAG+AGG | 0.684405 | 5.2:-70125832 | MS.gene29612:CDS |
| TTGATGAATGAAGTTCTACA+TGG | 0.706429 | 5.2:-70127018 | MS.gene29612:CDS |
| AAGATGCAAAGAGAATTGAG+GGG | 0.796557 | 5.2:-70126910 | MS.gene29612:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATGCTAATGAATATTA+TGG | - | chr5.2:70126656-70126675 | MS.gene29612:intron | 15.0% |
| !! | AAGTTATCTAATTCTTCTAT+AGG | + | chr5.2:70127350-70127369 | None:intergenic | 20.0% |
| !! | AATTCAATTGTGATACAATT+TGG | - | chr5.2:70126297-70126316 | MS.gene29612:intron | 20.0% |
| !! | CATATCAAATGTACAAAATA+AGG | + | chr5.2:70127097-70127116 | None:intergenic | 20.0% |
| !!! | AAGAACTAAAAGTATTTTGA+AGG | + | chr5.2:70126961-70126980 | None:intergenic | 20.0% |
| !!! | AATTTTCAGTGTATTTGTTT+TGG | - | chr5.2:70126578-70126597 | MS.gene29612:intron | 20.0% |
| !!! | CTTATTTTGTACATTTGATA+TGG | - | chr5.2:70127095-70127114 | MS.gene29612:CDS | 20.0% |
| ! | AAATATGGATCATGTAAATG+CGG | - | chr5.2:70126863-70126882 | MS.gene29612:CDS | 25.0% |
| ! | AAATGGATGATTCATTTGTT+TGG | - | chr5.2:70125813-70125832 | MS.gene29612:CDS | 25.0% |
| ! | AAATTGCAACCACAATATAA+AGG | + | chr5.2:70126415-70126434 | None:intergenic | 25.0% |
| ! | AAGAAGTTACAATTAGAAGA+AGG | - | chr5.2:70125632-70125651 | MS.gene29612:CDS | 25.0% |
| ! | ATAGACATTATGCTTATGTA+TGG | - | chr5.2:70126702-70126721 | MS.gene29612:intron | 25.0% |
| ! | CTTCAAAATCCTTTATATTG+TGG | - | chr5.2:70126403-70126422 | MS.gene29612:intron | 25.0% |
| ! | TAACAACAATAACACTGTTA+AGG | - | chr5.2:70125922-70125941 | MS.gene29612:intron | 25.0% |
| ! | TCAAAATCTGTGTTGAAATA+TGG | - | chr5.2:70126848-70126867 | MS.gene29612:CDS | 25.0% |
| ! | TGTCTATACAATAGAACATA+AGG | + | chr5.2:70126689-70126708 | None:intergenic | 25.0% |
| ! | TTAGATGTTGTTGCATTATA+TGG | - | chr5.2:70126326-70126345 | MS.gene29612:intron | 25.0% |
| ! | TTATATATAGCATTGCTGAT+TGG | + | chr5.2:70126985-70127004 | None:intergenic | 25.0% |
| !! | TTTTCTCTTAATACAGAACA+TGG | + | chr5.2:70126463-70126482 | None:intergenic | 25.0% |
| AAAATCATGCTTTGCAAACA+AGG | - | chr5.2:70125738-70125757 | MS.gene29612:CDS | 30.0% | |
| AAAGATGCAAAGAGAATTGA+GGG | - | chr5.2:70126069-70126088 | MS.gene29612:intron | 30.0% | |
| AAAGTTGTGGAATTCTTTGT+TGG | - | chr5.2:70126036-70126055 | MS.gene29612:intron | 30.0% | |
| AAATCATGCTTTGCAAACAA+GGG | - | chr5.2:70125739-70125758 | MS.gene29612:CDS | 30.0% | |
| ACATTATGCTTATGTATGGT+AGG | - | chr5.2:70126706-70126725 | MS.gene29612:intron | 30.0% | |
| ACTTCATTCATCAATGATGA+AGG | + | chr5.2:70125956-70125975 | None:intergenic | 30.0% | |
| ATAACATCAACCATAAGAGT+TGG | + | chr5.2:70125866-70125885 | None:intergenic | 30.0% | |
| GGTAGGTACAAAAAAGAATT+TGG | - | chr5.2:70126723-70126742 | MS.gene29612:CDS | 30.0% | |
| GGTTAAGCTAAATAGAGAAA+TGG | - | chr5.2:70125796-70125815 | MS.gene29612:CDS | 30.0% | |
| GTGGATAAGAAAGGATAATT+GGG | - | chr5.2:70127205-70127224 | MS.gene29612:CDS | 30.0% | |
| TGTGGATAAGAAAGGATAAT+TGG | - | chr5.2:70127204-70127223 | MS.gene29612:CDS | 30.0% | |
| TTGATGAATGAAGTTCTACA+TGG | - | chr5.2:70125962-70125981 | MS.gene29612:intron | 30.0% | |
| TTGTTCCTTTATGCAATGAA+GGG | - | chr5.2:70126517-70126536 | MS.gene29612:intron | 30.0% | |
| TTTGTTCCTTTATGCAATGA+AGG | - | chr5.2:70126516-70126535 | MS.gene29612:intron | 30.0% | |
| ! | AACTCTTATGGTTGATGTTA+TGG | - | chr5.2:70125865-70125884 | MS.gene29612:intron | 30.0% |
| ! | ATTTGTTTGGTTGTTTCAAC+AGG | - | chr5.2:70125826-70125845 | MS.gene29612:CDS | 30.0% |
| ! | TTTCTTGTTGTGGATAAGAA+AGG | - | chr5.2:70127196-70127215 | MS.gene29612:CDS | 30.0% |
| !!! | AGAACATGGTTTTAATTAGC+AGG | + | chr5.2:70126449-70126468 | None:intergenic | 30.0% |
| !!! | ATGGTTTTAAATTGCAGTCA+CGG | - | chr5.2:70126345-70126364 | MS.gene29612:intron | 30.0% |
| !!! | TATTTGTTTTGGCCTAAAGT+GGG | - | chr5.2:70126589-70126608 | MS.gene29612:intron | 30.0% |
| AAAGAAGGAGTTAACAGAAG+AGG | - | chr5.2:70126009-70126028 | MS.gene29612:intron | 35.0% | |
| AACCAATCACACATTTGCAT+CGG | + | chr5.2:70126925-70126944 | None:intergenic | 35.0% | |
| AAGATGCAAAGAGAATTGAG+GGG | - | chr5.2:70126070-70126089 | MS.gene29612:intron | 35.0% | |
| ACTGAGATATCTACAAGCAT+TGG | - | chr5.2:70127235-70127254 | MS.gene29612:CDS | 35.0% | |
| CAAAGATGCAAAGAGAATTG+AGG | - | chr5.2:70126068-70126087 | MS.gene29612:intron | 35.0% | |
| CACGGTTATGCTATAAAATG+CGG | - | chr5.2:70126363-70126382 | MS.gene29612:intron | 35.0% | |
| GACAGAAGAAGTGAATTGTA+AGG | + | chr5.2:70126220-70126239 | None:intergenic | 35.0% | |
| GATAAATAGTAAGTGTTCCC+AGG | + | chr5.2:70127269-70127288 | None:intergenic | 35.0% | |
| TCAAGATGAGTGTGTAAAGA+AGG | - | chr5.2:70125994-70126013 | MS.gene29612:intron | 35.0% | |
| TGTTCCTTTATGCAATGAAG+GGG | - | chr5.2:70126518-70126537 | MS.gene29612:intron | 35.0% | |
| TTGTCATGAAGGACAATGAT+GGG | - | chr5.2:70126263-70126282 | MS.gene29612:intron | 35.0% | |
| ! | ATGTCATTTCAACCCACTTT+AGG | + | chr5.2:70126604-70126623 | None:intergenic | 35.0% |
| ! | CAAAGTATGCTAGTTTCCTT+TGG | - | chr5.2:70127288-70127307 | MS.gene29612:CDS | 35.0% |
| !! | GATATGCTGATTTCTTGTTG+TGG | - | chr5.2:70127186-70127205 | MS.gene29612:CDS | 35.0% |
| !! | TGAAGACTTGGAAAGTGTTA+TGG | - | chr5.2:70125775-70125794 | MS.gene29612:CDS | 35.0% |
| !!! | GTATTTGTTTTGGCCTAAAG+TGG | - | chr5.2:70126588-70126607 | MS.gene29612:intron | 35.0% |
| ATCACCCCTTCATTGCATAA+AGG | + | chr5.2:70126525-70126544 | None:intergenic | 40.0% | |
| ATCCGATGCAAATGTGTGAT+TGG | - | chr5.2:70126920-70126939 | MS.gene29612:CDS | 40.0% | |
| CAGAAGAGGAAGAAAAGTTG+TGG | - | chr5.2:70126023-70126042 | MS.gene29612:intron | 40.0% | |
| CAGTGAAACACCAACTCTTA+TGG | - | chr5.2:70125853-70125872 | MS.gene29612:CDS | 40.0% | |
| CATCATTGTCCTTCATGACA+AGG | + | chr5.2:70126264-70126283 | None:intergenic | 40.0% | |
| CTACAAACAATCAGTGCTAG+TGG | - | chr5.2:70127136-70127155 | MS.gene29612:CDS | 40.0% | |
| CTTGTCATGAAGGACAATGA+TGG | - | chr5.2:70126262-70126281 | MS.gene29612:intron | 40.0% | |
| GATTGAAGGGGATCAATATG+AGG | - | chr5.2:70126147-70126166 | MS.gene29612:intron | 40.0% | |
| GTTGTGGAATTCTTTGTTGG+AGG | - | chr5.2:70126039-70126058 | MS.gene29612:intron | 40.0% | |
| GTTTCTCTTCCTTGTCATGA+AGG | - | chr5.2:70126252-70126271 | MS.gene29612:intron | 40.0% | |
| TAGATGTGTCTAACTGTGCA+CGG | + | chr5.2:70126774-70126793 | None:intergenic | 40.0% | |
| TCACACATTTGCATCGGATT+TGG | + | chr5.2:70126919-70126938 | None:intergenic | 40.0% | |
| ! | CAAACAAGGGAGTTACTTTG+TGG | - | chr5.2:70125752-70125771 | MS.gene29612:CDS | 40.0% |
| ! | GTTACTTTGTGGTGAAGACT+TGG | - | chr5.2:70125763-70125782 | MS.gene29612:CDS | 40.0% |
| ! | TGTTTCTGTGGAGATTGAAG+GGG | - | chr5.2:70126135-70126154 | MS.gene29612:intron | 40.0% |
| !! | CTGTTTCTGTGGAGATTGAA+GGG | - | chr5.2:70126134-70126153 | MS.gene29612:intron | 40.0% |
| AGAATTGAGGGGTGAGGATT+TGG | - | chr5.2:70126081-70126100 | MS.gene29612:intron | 45.0% | |
| ATGCGGTCGATGTTGTTCAT+AGG | - | chr5.2:70126380-70126399 | MS.gene29612:intron | 45.0% | |
| CCTTCAATCTCCACAGAAAC+AGG | + | chr5.2:70126136-70126155 | None:intergenic | 45.0% | |
| CTACAATATGCTTCAGCCTC+TGG | + | chr5.2:70127167-70127186 | None:intergenic | 45.0% | |
| !! | AAGCATTGGAAGCAGATCCT+GGG | - | chr5.2:70127249-70127268 | MS.gene29612:CDS | 45.0% |
| !! | AGTTTCCTTTGGAACACTGG+TGG | - | chr5.2:70127299-70127318 | MS.gene29612:CDS | 45.0% |
| !! | CCTGTTTCTGTGGAGATTGA+AGG | - | chr5.2:70126133-70126152 | MS.gene29612:intron | 45.0% |
| !! | GCTAGTTTCCTTTGGAACAC+TGG | - | chr5.2:70127296-70127315 | MS.gene29612:CDS | 45.0% |
| !! | GTTTCTGAGTCCTGTTTCTG+TGG | - | chr5.2:70126123-70126142 | MS.gene29612:intron | 45.0% |
| GCAAAGAGAATTGAGGGGTG+AGG | - | chr5.2:70126075-70126094 | MS.gene29612:intron | 50.0% | |
| GTTGTCCACCAGTGTTCCAA+AGG | + | chr5.2:70127307-70127326 | None:intergenic | 50.0% | |
| !! | CAAGCATTGGAAGCAGATCC+TGG | - | chr5.2:70127248-70127267 | MS.gene29612:CDS | 50.0% |
| AGTGCTAGTGGAGTCACCAG+AGG | - | chr5.2:70127148-70127167 | MS.gene29612:CDS | 55.0% | |
| TCTAACTGTGCACGGTCACG+AGG | + | chr5.2:70126766-70126785 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 70125623 | 70127379 | 70125623 | ID=MS.gene29612 |
| chr5.2 | mRNA | 70125623 | 70127379 | 70125623 | ID=MS.gene29612.t1;Parent=MS.gene29612 |
| chr5.2 | exon | 70126718 | 70127379 | 70126718 | ID=MS.gene29612.t1.exon1;Parent=MS.gene29612.t1 |
| chr5.2 | CDS | 70126718 | 70127379 | 70126718 | ID=cds.MS.gene29612.t1;Parent=MS.gene29612.t1 |
| chr5.2 | exon | 70125623 | 70125878 | 70125623 | ID=MS.gene29612.t1.exon2;Parent=MS.gene29612.t1 |
| chr5.2 | CDS | 70125623 | 70125878 | 70125623 | ID=cds.MS.gene29612.t1;Parent=MS.gene29612.t1 |
| Gene Sequence |
| Protein sequence |
