AlfalfaGEDB | MS.gene29612

M. sativa cultivar XinJiangDaYe / MS.gene29612

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene29612.t1	XP_003616591.1	95.1	305	7	1	1	305	120	416	6.30E-111	410.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene29612.t1	G7KGW7	95.1	305	7	1	1	305	120	416	4.6e-111	410.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049293	MS.gene29612	-0.82852	8.59E-55	-1.69E-46
MS.gene049825	MS.gene29612	0.805022	1.63E-49	-1.69E-46
MS.gene050303	MS.gene29612	0.810981	8.79E-51	-1.69E-46
MS.gene051678	MS.gene29612	0.81419	1.75E-51	-1.69E-46
MS.gene052176	MS.gene29612	0.834801	2.43E-56	-1.69E-46
MS.gene052302	MS.gene29612	0.822259	2.61E-53	-1.69E-46
MS.gene052309	MS.gene29612	-0.861621	9.02E-64	-1.69E-46
MS.gene052358	MS.gene29612	-0.833212	6.07E-56	-1.69E-46
MS.gene052376	MS.gene29612	0.82035	7.18E-53	-1.69E-46
MS.gene053294	MS.gene29612	0.846475	2.12E-59	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene29612.t1	MTR_5g082130	94.754	305	8	1	1	305	120	416	0.0	585
MS.gene29612.t1	MTR_3g463450	40.793	353	146	5	1	299	165	508	9.97e-78	246
MS.gene29612.t1	MTR_2g103795	40.187	107	64	0	185	291	137	243	6.59e-18	82.4
MS.gene29612.t1	MTR_7g098450	31.073	177	116	2	112	285	174	347	1.01e-17	82.8
MS.gene29612.t1	MTR_7g098450	31.073	177	116	2	112	285	151	324	1.26e-17	82.4
MS.gene29612.t1	MTR_7g099260	35.849	106	66	1	190	295	240	343	1.42e-15	76.6
MS.gene29612.t1	MTR_4g114690	38.679	106	65	0	178	283	153	258	1.16e-14	73.2
MS.gene29612.t1	MTR_4g010250	36.449	107	66	2	185	290	122	227	3.13e-14	71.6
MS.gene29612.t1	MTR_1g073230	36.458	96	61	0	190	285	276	371	5.38e-12	66.2
MS.gene29612.t1	MTR_2g103795	40.230	87	52	0	185	271	137	223	5.45e-12	64.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene29612.t1	AT3G47080	39.210	329	153	7	1	299	198	509	2.70e-70	226
MS.gene29612.t1	AT2G29670	47.879	165	83	1	135	299	368	529	2.22e-45	161
MS.gene29612.t1	AT2G29670	52.252	111	52	1	1	111	164	273	1.05e-30	121
MS.gene29612.t1	AT2G29670	47.879	165	83	1	135	299	368	529	2.22e-45	161
MS.gene29612.t1	AT2G29670	52.252	111	52	1	1	111	164	273	1.05e-30	121
MS.gene29612.t1	AT1G07280	47.561	164	77	2	135	298	389	543	3.02e-42	153
MS.gene29612.t1	AT1G07280	31.329	316	178	6	1	283	187	496	3.29e-36	136
MS.gene29612.t1	AT1G07280	47.561	164	77	2	135	298	389	543	3.02e-42	153
MS.gene29612.t1	AT1G07280	31.329	316	178	6	1	283	187	496	3.29e-36	136
MS.gene29612.t1	AT1G07280	47.561	164	77	2	135	298	389	543	3.02e-42	153

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Find 52 sgRNAs with CRISPR-Local

Find 85 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCATGCTTTGCAAACA+AGG	0.483766	5.2:-70127242	MS.gene29612:CDS
AAAGAAGGAGTTAACAGAAG+AGG	0.575932	5.2:-70126971	MS.gene29612:CDS
AAAGATGCAAAGAGAATTGA+GGG	0.474427	5.2:-70126911	MS.gene29612:CDS
AAAGTTGTGGAATTCTTTGT+TGG	0.394009	5.2:-70126944	MS.gene29612:CDS
AAATCATGCTTTGCAAACAA+GGG	0.615943	5.2:-70127241	MS.gene29612:CDS
AAATGGATGATTCATTTGTT+TGG	0.426457	5.2:-70127167	MS.gene29612:CDS
AACTCTTATGGTTGATGTTA+TGG	0.249882	5.2:-70127115	MS.gene29612:CDS
AAGAAGTTACAATTAGAAGA+AGG	0.410886	5.2:-70127348	MS.gene29612:CDS
AAGATGCAAAGAGAATTGAG+GGG	0.796557	5.2:-70126910	MS.gene29612:CDS
AAGCATTGGAAGCAGATCCT+GGG	0.582991	5.2:-70125731	MS.gene29612:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATCATGCTTTGCAAACA+AGG	-	chr5.2:70125738-70125757	MS.gene29612:CDS	30.0%
AAAGATGCAAAGAGAATTGA+GGG	-	chr5.2:70126069-70126088	MS.gene29612:intron	30.0%
AAAGTTGTGGAATTCTTTGT+TGG	-	chr5.2:70126036-70126055	MS.gene29612:intron	30.0%
AAATCATGCTTTGCAAACAA+GGG	-	chr5.2:70125739-70125758	MS.gene29612:CDS	30.0%
ACATTATGCTTATGTATGGT+AGG	-	chr5.2:70126706-70126725	MS.gene29612:intron	30.0%
ACTTCATTCATCAATGATGA+AGG	+	chr5.2:70125956-70125975	None:intergenic	30.0%
ATAACATCAACCATAAGAGT+TGG	+	chr5.2:70125866-70125885	None:intergenic	30.0%
GGTAGGTACAAAAAAGAATT+TGG	-	chr5.2:70126723-70126742	MS.gene29612:CDS	30.0%
GGTTAAGCTAAATAGAGAAA+TGG	-	chr5.2:70125796-70125815	MS.gene29612:CDS	30.0%
GTGGATAAGAAAGGATAATT+GGG	-	chr5.2:70127205-70127224	MS.gene29612:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.2	gene	70125623	70127379	70125623	ID=MS.gene29612
chr5.2	mRNA	70125623	70127379	70125623	ID=MS.gene29612.t1;Parent=MS.gene29612
chr5.2	exon	70126718	70127379	70126718	ID=MS.gene29612.t1.exon1;Parent=MS.gene29612.t1
chr5.2	CDS	70126718	70127379	70126718	ID=cds.MS.gene29612.t1;Parent=MS.gene29612.t1
chr5.2	exon	70125623	70125878	70125623	ID=MS.gene29612.t1.exon2;Parent=MS.gene29612.t1
chr5.2	CDS	70125623	70125878	70125623	ID=cds.MS.gene29612.t1;Parent=MS.gene29612.t1

Gene Sequence

>MS.gene29612

ATGATTAAGAAGAAGTTACAATTAGAAGAAGGTTTGAAAGATGAAGCAAGTAAACTGAATAATTGTTCTGTAAAGAAGAGTTTTTCATCTATGTTGTTTATGCTTCATGAACTTCAAAATCATGCTTTGCAAACAAGGGAGTTACTTTGTGGTGAAGACTTGGAAAGTGTTATGGTTAAGCTAAATAGAGAAATGGATGATTCATTTGTTTGGTTGTTTCAACAGGTTTTCAGTGAAACACCAACTCTTATGGTTGATGTTATGGTTTTTTTAAGTAATTTTTCTCTGTTTTCTATGAGTAACAACAATAACACTGTTAAGGATGTTAATCCTTCATCATTGATGAATGAAGTTCTACATGGTGATGTTGTTCAAGATGAGTGTGTAAAGAAGGAGTTAACAGAAGAGGAAGAAAAGTTGTGGAATTCTTTGTTGGAGGAAGCTTCAAAGATGCAAAGAGAATTGAGGGGTGAGGATTTGGATCATGAAACAATGATGAAGTTTCTGAGTCCTGTTTCTGTGGAGATTGAAGGGGATCAATATGAGGAATATGAGAAAACTGATGCTTATTACAAAAAGCATATAAGTCTTGCACCTTACAATTCACTTCTTCTGTCAAACTATGCACAGTTTCTCTTCCTTGTCATGAAGGACAATGATGGGTAAGTTCTCAAAATTCAATTGTGATACAATTTGGCTAGAATTAGATGTTGTTGCATTATATGGTTTTAAATTGCAGTCACGGTTATGCTATAAAATGCGGTCGATGTTGTTCATAGGCTTCAAAATCCTTTATATTGTGGTTGCAATTTTGTTGTTGCAACCTGCTAATTAAAACCATGTTCTGTATTAAGAGAAAAATATACTTAGAAAAGAATCATATGATATGCTTGTTTGTTCCTTTATGCAATGAAGGGGTGATTAATTTTTTATTTGTTTTGAAGCTAAAATTAGTAATTTTCAGTGTATTTGTTTTGGCCTAAAGTGGGTTGAAATGACATTTTTAAGTGTTGACAGACAAATATGAGCAAGAAAAAATGCTAATGAATATTATGGTTGTTGTCCTTATGTTCTATTGTATAGACATTATGCTTATGTATGGTAGGTACAAAAAAGAATTTGGATTGTGTGTAATAACAACCTCGTGACCGTGCACAGTTAGACACATCTAATCAGACGATTTAGATTTCAAGCTCAGTATTTTAGATTTAAAAAAAAAAATATATCAAAATCTGTGTTGAAATATGGATCATGTAAATGCGGTTAACTGCGTGCAGTCACACTGCACACTATCCAAATCCGATGCAAATGTGTGATTGGTTAGTTTTGAATAAGCCTTCAAAATACTTTTAGTTCTTACCAATCAGCAATGCTATATATAATGAGAGTAACATACTATTAGTTCAAAAGAATGTACATGCATTATTCTTTGAAGTCTGAAGAGTTACATACTTCATTACAAATTTAATTTCCTTATTTTGTACATTTGATATGGTTACAGTGCTGAAGAATACTACAAACAATCAGTGCTAGTGGAGTCACCAGAGGCTGAAGCATATTGTAGATATGCTGATTTCTTGTTGTGGATAAGAAAGGATAATTGGGCAGCAGAACTGAGATATCTACAAGCATTGGAAGCAGATCCTGGGAACACTTACTATTTATCAAAGTATGCTAGTTTCCTTTGGAACACTGGTGGACAACAAGAGAATAGTACTAGCTTTCCTATAGAAGAATTAGATAACTTACAAATATGA

Protein sequence

>MS.gene29612.t1

MIKKKLQLEEGLKDEASKLNNCSVKKSFSSMLFMLHELQNHALQTRELLCGEDLESVMVKLNREMDDSFVWLFQQVFSETPTLMVDVMVFLSNFSLFSMSNNNNTVKDVNPSSLMNEVLHGDVVQDECVKKELTEEEEKLWNSLLEEASKMQRELRGEDLDHETMMKFLSPVSVEIEGDQYEEYEKTDAYYKKHISLAPYNSLLLSNYAQFLFLVMKDNDGAEEYYKQSVLVESPEAEAYCRYADFLLWIRKDNWAAELRYLQALEADPGNTYYLSKYASFLWNTGGQQENSTSFPIEELDNLQI