AlfalfaGEDB | MS.gene30246

M. sativa cultivar XinJiangDaYe / MS.gene30246

KEGG: K15032
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02536.17

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene30246.t1	XP_013470448.1	99.3	442	3	0	1	442	60	501	3.00E-138	501.9

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene30246.t1	Q9ZT96	69.0	393	122	0	13	405	112	504	5.5e-48	193.4

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene30246.t1	A0A072VS35	99.3	442	3	0	1	442	60	501	2.2e-138	501.9

TFs/TRs:

Gene ID	Type	Classification
MS.gene30246.t1	TR	mTERF

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049293	MS.gene30246	-0.808637	2.81E-50	-1.69E-46
MS.gene050303	MS.gene30246	0.845765	3.31E-59	-1.69E-46
MS.gene050623	MS.gene30246	-0.822073	2.88E-53	-1.69E-46
MS.gene052309	MS.gene30246	-0.832551	8.86E-56	-1.69E-46
MS.gene053080	MS.gene30246	0.810694	1.01E-50	-1.69E-46
MS.gene054657	MS.gene30246	0.831805	1.36E-55	-1.69E-46
MS.gene057060	MS.gene30246	0.800096	1.69E-48	-1.69E-46
MS.gene057079	MS.gene30246	0.806607	7.58E-50	-1.69E-46
MS.gene057555	MS.gene30246	0.810033	1.41E-50	-1.69E-46
MS.gene058126	MS.gene30246	0.809765	1.61E-50	-1.69E-46
MS.gene058399	MS.gene30246	0.833198	6.12E-56	-1.69E-46
MS.gene058548	MS.gene30246	0.840019	1.12E-57	-1.69E-46
MS.gene058549	MS.gene30246	0.860493	1.99E-63	-1.69E-46
MS.gene05954	MS.gene30246	0.822943	1.81E-53	-1.69E-46
MS.gene059569	MS.gene30246	0.819649	1.04E-52	-1.69E-46
MS.gene05979	MS.gene30246	0.866075	3.72E-65	-1.69E-46
MS.gene060297	MS.gene30246	0.816748	4.71E-52	-1.69E-46
MS.gene060586	MS.gene30246	0.814476	1.51E-51	-1.69E-46
MS.gene060803	MS.gene30246	0.805451	1.33E-49	-1.69E-46
MS.gene060907	MS.gene30246	0.813289	2.76E-51	-1.69E-46

PPI:

Gene1	Gene2	Type
MS.gene30246	MS.gene013885	PPI
MS.gene042550	MS.gene30246	PPI
MS.gene41848	MS.gene30246	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene30246.t1	MTR_1g115415	98.190	442	8	0	1	442	60	501	0.0	873
MS.gene30246.t1	MTR_8g105560	83.182	440	21	2	1	440	38	424	0.0	707
MS.gene30246.t1	MTR_5g068860	53.250	400	185	1	12	409	103	502	1.94e-152	443
MS.gene30246.t1	MTR_4g070060	25.278	360	259	5	45	397	235	591	1.17e-34	136
MS.gene30246.t1	MTR_6g003960	27.164	335	238	6	65	397	263	593	4.25e-27	114
MS.gene30246.t1	MTR_2g034600	26.168	321	191	6	79	396	210	487	1.43e-26	112
MS.gene30246.t1	MTR_2g034600	22.348	264	179	5	8	267	189	430	4.94e-12	68.2
MS.gene30246.t1	MTR_2g034600	27.972	286	162	5	149	396	269	548	1.59e-26	112
MS.gene30246.t1	MTR_2g034600	22.348	264	179	5	8	267	250	491	4.55e-12	68.2
MS.gene30246.t1	MTR_2g034600	27.972	286	162	5	149	396	273	552	1.84e-26	112
MS.gene30246.t1	MTR_2g034600	22.348	264	179	5	8	267	254	495	4.57e-12	68.2
MS.gene30246.t1	MTR_4g084630	22.436	312	198	5	86	392	47	319	8.14e-26	107
MS.gene30246.t1	MTR_4g084630	25.108	231	147	3	23	252	45	250	2.97e-17	82.8
MS.gene30246.t1	MTR_5g094610	24.373	279	200	7	102	373	176	450	1.42e-19	91.3
MS.gene30246.t1	MTR_5g094610	24.627	268	186	8	22	277	194	457	5.92e-16	80.5
MS.gene30246.t1	MTR_2g049780	26.923	208	116	3	222	393	99	306	4.95e-16	79.0
MS.gene30246.t1	MTR_5g041630	27.059	255	138	7	151	397	88	302	6.43e-14	72.8
MS.gene30246.t1	MTR_2g067230	23.659	317	151	11	86	397	75	305	1.69e-13	71.6
MS.gene30246.t1	MTR_3g092710	22.819	298	184	7	99	391	235	491	1.55e-12	69.7

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene30246.t1	AT2G44020	80.587	443	85	1	1	442	65	507	0.0	733
MS.gene30246.t1	AT4G02990	53.181	393	184	0	13	405	112	504	8.61e-153	444
MS.gene30246.t1	AT4G02990	53.181	393	184	0	13	405	112	504	8.61e-153	444
MS.gene30246.t1	AT2G21710	24.716	352	261	3	77	427	278	626	8.59e-39	148
MS.gene30246.t1	AT2G21710	26.070	257	176	5	7	252	272	525	2.37e-17	85.1
MS.gene30246.t1	AT1G78930	26.488	336	240	6	65	397	249	580	1.56e-31	127
MS.gene30246.t1	AT4G38160	25.547	274	195	4	128	395	54	324	7.63e-29	116
MS.gene30246.t1	AT4G38160	24.020	204	153	2	65	266	63	266	1.09e-15	78.2
MS.gene30246.t1	AT4G38160	25.547	274	195	4	128	395	54	324	7.63e-29	116
MS.gene30246.t1	AT4G38160	24.020	204	153	2	65	266	63	266	1.09e-15	78.2
MS.gene30246.t1	AT4G38160	25.547	274	195	4	128	395	54	324	1.52e-28	115
MS.gene30246.t1	AT4G38160	23.902	205	154	2	65	267	63	267	1.59e-15	78.2
MS.gene30246.t1	AT4G38160	25.547	274	195	4	128	395	54	324	1.56e-28	116
MS.gene30246.t1	AT4G38160	23.902	205	154	2	65	267	63	267	1.42e-15	78.6
MS.gene30246.t1	AT2G21710	23.571	280	212	2	77	355	278	556	1.20e-26	112
MS.gene30246.t1	AT2G21710	26.070	257	176	5	7	252	272	525	1.93e-17	85.1
MS.gene30246.t1	AT2G21710	23.381	278	211	2	77	353	278	554	8.79e-26	110
MS.gene30246.t1	AT2G21710	26.070	257	176	5	7	252	272	525	2.01e-17	85.1
MS.gene30246.t1	AT4G14605	25.130	386	268	9	14	392	97	468	6.50e-24	104
MS.gene30246.t1	AT4G14605	25.130	386	268	9	14	392	97	468	6.50e-24	104
MS.gene30246.t1	AT5G55580	26.484	219	154	4	158	371	119	335	2.87e-19	89.7
MS.gene30246.t1	AT5G55580	25.385	260	179	7	20	267	79	335	1.46e-16	81.6
MS.gene30246.t1	AT5G55580	23.853	218	160	3	84	299	117	330	2.31e-14	74.7
MS.gene30246.t1	AT5G55580	26.484	219	154	4	158	371	225	441	1.83e-18	88.2
MS.gene30246.t1	AT5G55580	25.385	260	179	7	20	267	185	441	1.98e-16	81.6
MS.gene30246.t1	AT5G55580	23.767	223	164	3	84	304	223	441	6.22e-14	73.9
MS.gene30246.t1	AT5G54180	23.311	296	184	7	101	393	235	490	3.66e-15	77.8
MS.gene30246.t1	AT1G61980	24.118	340	235	10	77	403	81	410	1.16e-14	75.9
MS.gene30246.t1	AT1G61980	24.118	340	235	10	77	403	81	410	1.16e-14	75.9
MS.gene30246.t1	AT1G61980	24.118	340	235	10	77	403	81	410	1.16e-14	75.9
MS.gene30246.t1	AT2G34620	26.887	212	119	4	222	397	85	296	1.65e-13	71.6
MS.gene30246.t1	AT2G03050	29.317	249	151	9	158	395	38	272	4.67e-13	69.7
MS.gene30246.t1	AT2G03050	29.317	249	151	9	158	395	39	273	4.77e-13	69.7
MS.gene30246.t1	AT5G55580	25.000	172	127	2	84	253	223	394	2.12e-12	68.9
MS.gene30246.t1	AT5G55580	26.943	193	129	5	20	200	185	377	2.93e-12	68.6
MS.gene30246.t1	AT2G36000	23.506	251	169	8	158	399	79	315	4.98e-12	67.0
MS.gene30246.t1	AT2G36000	23.387	248	167	8	158	396	79	312	1.11e-11	66.2

Find 98 sgRNAs with CRISPR-Local

Find 120 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCAGTATCCTTTGATTT+TGG	0.073063	4.2:+1364501	MS.gene30246:CDS
GTTGAGTTTATTCAGAAATT+AGG	0.154219	4.2:+1364460	MS.gene30246:CDS
GTTGATTACTTGGTTAATTT+AGG	0.165369	4.2:+1364880	MS.gene30246:CDS
GCTCAGTATCCGCAGATTAT+TGG	0.227610	4.2:+1365042	MS.gene30246:CDS
TCCTGATGAATTGCAGGATT+TGG	0.241747	4.2:+1364402	MS.gene30246:CDS
TTGATTACTTGGTTAATTTA+GGG	0.248506	4.2:+1364881	MS.gene30246:CDS
GGATAAAATGTTCGTTGAAT+TGG	0.261081	4.2:+1365430	MS.gene30246:CDS
AGAATACTTCACTTATAGTT+TGG	0.295127	4.2:+1365365	MS.gene30246:CDS
CTCAGTATCCGCAGATTATT+GGG	0.297010	4.2:+1365043	MS.gene30246:CDS
CTTCGATTATCTCAAGGGTT+TGG	0.298946	4.2:+1364372	MS.gene30246:CDS
GTTGATTGTTTGATTAGTTT+TGG	0.307251	4.2:+1364988	MS.gene30246:CDS
CTCTTAAGCCTCTGGTATCT+AGG	0.309752	4.2:-1365402	None:intergenic
TTCGATTATCTCAAGGGTTT+GGG	0.314201	4.2:+1364373	MS.gene30246:CDS
TTGAGTTTATTCAGAAATTA+GGG	0.329984	4.2:+1364461	MS.gene30246:CDS
GATTATTGGGTTGCCTCTTA+AGG	0.337713	4.2:+1365056	MS.gene30246:CDS
CTTCAACCGTTGAAGTTATG+AGG	0.356463	4.2:+1364431	MS.gene30246:CDS
AATTATTCCTGATGAATTGC+AGG	0.358521	4.2:+1364396	MS.gene30246:CDS
CCTGTTATTAAGTTTCTTAG+AGG	0.361016	4.2:+1364658	MS.gene30246:CDS
AAACTATAAGTGAAGTATTC+TGG	0.362016	4.2:-1365363	None:intergenic
TCAAAATGTGATTATGAAAC+CGG	0.364444	4.2:+1365182	MS.gene30246:CDS
CTAATCAAACAATCAACATT+AGG	0.365413	4.2:-1364982	None:intergenic
CCTCTAAGAAACTTAATAAC+AGG	0.368936	4.2:-1364658	None:intergenic
TTAGTATTGGTGTTAATCCT+AGG	0.373470	4.2:+1364785	MS.gene30246:CDS
TCCCCTTGCTCTTAAGCCTC+TGG	0.375995	4.2:-1365410	None:intergenic
GAGATTTGAAGAGAGATTGC+AGG	0.401297	4.2:+1365473	MS.gene30246:CDS
GTCGCAGGATGTGGCTAGTA+TGG	0.403205	4.2:+1365233	MS.gene30246:CDS
GTAGCTTATCTTGTTAGTAT+TGG	0.406186	4.2:+1364772	MS.gene30246:CDS
CTCATAACTTCAACGGTTGA+AGG	0.413170	4.2:-1364430	None:intergenic
TCTGAAACTATGTCGTTTCC+TGG	0.421365	4.2:-1365558	None:intergenic
GAGAAAAGAGCTTATTTACT+TGG	0.423347	4.2:+1364934	MS.gene30246:CDS
ACCACCCTCGCAAACCCTTC+CGG	0.428125	4.2:-1365129	None:intergenic
GAAGACAATTTAGCCTTAAG+AGG	0.431995	4.2:-1365069	None:intergenic
GCAATCTCTCTTCAAATCTC+TGG	0.437449	4.2:-1365470	None:intergenic
GAATGAAGGACCTATACTTT+CGG	0.437668	4.2:-1365511	None:intergenic
TCCGGAAGGGTTTGCGAGGG+TGG	0.445823	4.2:+1365128	MS.gene30246:CDS
GGTGTTAATCCTAGGGATAT+TGG	0.451217	4.2:+1364793	MS.gene30246:CDS
TACTTCTTCAAAAGTGAGAT+GGG	0.459036	4.2:+1365312	MS.gene30246:CDS
GGAAGGGTTTGCGAGGGTGG+TGG	0.459551	4.2:+1365131	MS.gene30246:CDS
GAGGAAGGAATGTTTGCCTT+CGG	0.461475	4.2:+1365014	MS.gene30246:CDS
CGAGATGCCTACTGTTACAT+GGG	0.462699	4.2:+1364303	None:intergenic
TCCAAATCCTGCAATTCATC+AGG	0.465291	4.2:-1364403	None:intergenic
CATAGTTTCAGATGAGGAAG+AGG	0.486125	4.2:+1365569	MS.gene30246:CDS
ATCCTAGCTAGAATCTTCTT+AGG	0.491214	4.2:-1364907	None:intergenic
GGGATTTCTAGGTCTAAACT+TGG	0.492563	4.2:+1364577	MS.gene30246:CDS
ATAGGTCCTTCATTCCGTAT+TGG	0.501976	4.2:+1365519	MS.gene30246:CDS
TACCAGAGGCTTAAGAGCAA+GGG	0.502139	4.2:+1365408	MS.gene30246:CDS
CATCATCTTCGATTATCTCA+AGG	0.503798	4.2:+1364366	MS.gene30246:CDS
GGCAATACCGTCGCAGGATG+TGG	0.504137	4.2:+1365224	MS.gene30246:CDS
TTTGAAGCTTAAGATTGATC+CGG	0.506836	4.2:+1365110	MS.gene30246:CDS
TTACTTCTTCAAAAGTGAGA+TGG	0.508844	4.2:+1365311	MS.gene30246:CDS
TCCTAGGGATATTGGTCCAA+TGG	0.513309	4.2:+1364801	MS.gene30246:CDS
GTTACATGGGGTGTAATTCA+AGG	0.515509	4.2:+1364316	MS.gene30246:CDS
TTAACCAAGTAATCAACAAA+AGG	0.515918	4.2:-1364874	None:intergenic
GATGTGGAGAAAGATGATAT+TGG	0.522013	4.2:+1364685	MS.gene30246:CDS
TAGTATTGGTGTTAATCCTA+GGG	0.522188	4.2:+1364786	MS.gene30246:CDS
ACGAGATGCCTACTGTTACA+TGG	0.523419	4.2:+1364302	None:intergenic
TATATTGAAACCGAAAGTAT+AGG	0.527577	4.2:+1365501	MS.gene30246:CDS
TAAGGATACTGTGTAACCAT+TGG	0.531997	4.2:-1364817	None:intergenic
ATCATCTTCGATTATCTCAA+GGG	0.534022	4.2:+1364367	MS.gene30246:CDS
GCTCTAATTTCCCACCAATA+CGG	0.538425	4.2:-1365533	None:intergenic
GGTCCTTCATTCCGTATTGG+TGG	0.539928	4.2:+1365522	MS.gene30246:CDS
AGTTTAAACCCTAAAAGTTG+AGG	0.546911	4.2:-1364727	None:intergenic
TTCCCACCAATACGGAATGA+AGG	0.553754	4.2:-1365525	None:intergenic
ACTCGCAGCGCAATCAATTG+AGG	0.555993	4.2:-1365267	None:intergenic
AGCTTAAGATTGATCCGGAA+GGG	0.556415	4.2:+1365115	MS.gene30246:CDS
GTCCTTCATTCCGTATTGGT+GGG	0.557863	4.2:+1365523	MS.gene30246:CDS
TTCAACCGTTGAAGTTATGA+GGG	0.560167	4.2:+1364432	MS.gene30246:CDS
AGATTTGAAGAGAGATTGCA+GGG	0.561148	4.2:+1365474	MS.gene30246:CDS
ATACCAGAGGCTTAAGAGCA+AGG	0.565715	4.2:+1365407	MS.gene30246:CDS
CAAAGAGAAACTCGTTTCGC+GGG	0.570276	4.2:+1364342	MS.gene30246:CDS
GAAGATTCTAGCTAGGATGT+TGG	0.572863	4.2:+1364912	MS.gene30246:CDS
GCAAAGAGAAACTCGTTTCG+CGG	0.577091	4.2:+1364341	MS.gene30246:CDS
ACACTAGCATGCAAAACTTG+TGG	0.577739	4.2:-1364619	None:intergenic
TGGTAGGGCAATACCGTCGC+AGG	0.580954	4.2:+1365218	MS.gene30246:CDS
ACGTTCCCTCATAACTTCAA+CGG	0.581773	4.2:-1364437	None:intergenic
GAGGCCTGTAAAAGAGCTTG+TGG	0.585209	4.2:+1365335	MS.gene30246:CDS
ACACTACAGCCCAAAATCAA+AGG	0.590303	4.2:-1364511	None:intergenic
ACCAGAGGCTTAAGAGCAAG+GGG	0.605082	4.2:+1365409	MS.gene30246:CDS
GGTGGGAAATTAGAGCTACC+AGG	0.611291	4.2:+1365540	MS.gene30246:CDS
TTGATCCGGAAGGGTTTGCG+AGG	0.614047	4.2:+1365124	MS.gene30246:CDS
TGCCTAAGAAGATTCTAGCT+AGG	0.620780	4.2:+1364905	MS.gene30246:CDS
AAGCTTAAGATTGATCCGGA+AGG	0.621599	4.2:+1365114	MS.gene30246:CDS
TCTTCAAAAGTGAGATGGGG+AGG	0.627180	4.2:+1365316	MS.gene30246:CDS
GTTTCTTAGAGGACTTGATG+TGG	0.627869	4.2:+1364669	MS.gene30246:CDS
GGTGGTGGAGAAGATGCCAC+AGG	0.628330	4.2:+1365146	MS.gene30246:CDS
ACCATTGGACCAATATCCCT+AGG	0.638044	4.2:-1364802	None:intergenic
ATTACACCCCATGTAACAGT+AGG	0.644138	4.2:-1364310	None:intergenic
ACTTCTTCAAAAGTGAGATG+GGG	0.645282	4.2:+1365313	MS.gene30246:CDS
TGATGAAGACTAACCACCTG+TGG	0.651476	4.2:-1365162	None:intergenic
TGATCCGGAAGGGTTTGCGA+GGG	0.652425	4.2:+1365125	MS.gene30246:CDS
TGAAATGCTATACAGAAGAA+CGG	0.652624	4.2:+1365602	MS.gene30246:CDS
AAACGACATAGTTTCAGATG+AGG	0.658299	4.2:+1365563	MS.gene30246:CDS
ATACTAGCCACATCCTGCGA+CGG	0.678965	4.2:-1365231	None:intergenic
GGTGGAGAAGATGCCACAGG+TGG	0.679410	4.2:+1365149	MS.gene30246:CDS
GGATACTGAGCAATAACCGA+AGG	0.689064	4.2:-1365030	None:intergenic
AGAGGCAACCCAATAATCTG+CGG	0.697237	4.2:-1365051	None:intergenic
GAATTAAACCTAGATACCAG+AGG	0.721224	4.2:+1365394	MS.gene30246:CDS
GAGATGCCTACTGTTACATG+GGG	0.725465	4.2:+1364304	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	CAAACTGAAAAAATATTGTT+GGG	-	chr4.2:1365094-1365113	None:intergenic	20.0%
!!	TCAAACTGAAAAAATATTGT+TGG	-	chr4.2:1365095-1365114	None:intergenic	20.0%
!!	TTGAGTTTATTCAGAAATTA+GGG	+	chr4.2:1364461-1364480	MS.gene30246:CDS	20.0%
!!	TTGATTACTTGGTTAATTTA+GGG	+	chr4.2:1364881-1364900	MS.gene30246:CDS	20.0%
!!!	AAAAATATCCTCAACTTTTA+GGG	+	chr4.2:1364719-1364738	MS.gene30246:CDS	20.0%
!!!	TAGGGTATTTAGAAAAAATT+GGG	+	chr4.2:1364557-1364576	MS.gene30246:CDS	20.0%
!!!	TTAGGGTATTTAGAAAAAAT+TGG	+	chr4.2:1364556-1364575	MS.gene30246:CDS	20.0%
!	AGAATACTTCACTTATAGTT+TGG	+	chr4.2:1365365-1365384	MS.gene30246:CDS	25.0%
!	CTAATCAAACAATCAACATT+AGG	-	chr4.2:1364985-1365004	None:intergenic	25.0%
!	GTTGAGTTTATTCAGAAATT+AGG	+	chr4.2:1364460-1364479	MS.gene30246:CDS	25.0%
!	GTTGATTACTTGGTTAATTT+AGG	+	chr4.2:1364880-1364899	MS.gene30246:CDS	25.0%
!	TAGAAAAAATTGGGATTTCT+AGG	+	chr4.2:1364566-1364585	MS.gene30246:CDS	25.0%
!	TCAAAATGTGATTATGAAAC+CGG	+	chr4.2:1365182-1365201	MS.gene30246:CDS	25.0%
!	TTAACCAAGTAATCAACAAA+AGG	-	chr4.2:1364877-1364896	None:intergenic	25.0%
!!	AAAAACATGATTCCTGTTTT+AGG	+	chr4.2:1364538-1364557	MS.gene30246:CDS	25.0%
!!	AAAACATGATTCCTGTTTTA+GGG	+	chr4.2:1364539-1364558	MS.gene30246:CDS	25.0%
!!	AAACTATAAGTGAAGTATTC+TGG	-	chr4.2:1365366-1365385	None:intergenic	25.0%
!!	CAAAAATATCCTCAACTTTT+AGG	+	chr4.2:1364718-1364737	MS.gene30246:CDS	25.0%
!!	TATATTGAAACCGAAAGTAT+AGG	+	chr4.2:1365501-1365520	MS.gene30246:CDS	25.0%
!!	TTTTCTAAATACCCTAAAAC+AGG	-	chr4.2:1364553-1364572	None:intergenic	25.0%
!!!	AAATCAGTATCCTTTGATTT+TGG	+	chr4.2:1364501-1364520	MS.gene30246:CDS	25.0%
!!!	AATCAGTATCCTTTGATTTT+GGG	+	chr4.2:1364502-1364521	MS.gene30246:CDS	25.0%
!!!	ACACAGTATCCTTATTTTTT+AGG	+	chr4.2:1364826-1364845	MS.gene30246:CDS	25.0%
!!!	CACAGTATCCTTATTTTTTA+GGG	+	chr4.2:1364827-1364846	MS.gene30246:CDS	25.0%
!!!	GTTGATTGTTTGATTAGTTT+TGG	+	chr4.2:1364988-1365007	MS.gene30246:CDS	25.0%
	AATTATTCCTGATGAATTGC+AGG	+	chr4.2:1364396-1364415	MS.gene30246:CDS	30.0%
	ACTCTCATCCCTAAAAAATA+AGG	-	chr4.2:1364838-1364857	None:intergenic	30.0%
	AGTTTAAACCCTAAAAGTTG+AGG	-	chr4.2:1364730-1364749	None:intergenic	30.0%
	ATCATCTTCGATTATCTCAA+GGG	+	chr4.2:1364367-1364386	MS.gene30246:CDS	30.0%
	CCTGTTATTAAGTTTCTTAG+AGG	+	chr4.2:1364658-1364677	MS.gene30246:CDS	30.0%
	GAGAAAAGAGCTTATTTACT+TGG	+	chr4.2:1364934-1364953	MS.gene30246:CDS	30.0%
	GGATAAAATGTTCGTTGAAT+TGG	+	chr4.2:1365430-1365449	MS.gene30246:CDS	30.0%
	GTAGCTTATCTTGTTAGTAT+TGG	+	chr4.2:1364772-1364791	MS.gene30246:CDS	30.0%
	TACTTCTTCAAAAGTGAGAT+GGG	+	chr4.2:1365312-1365331	MS.gene30246:CDS	30.0%
	TGAAATGCTATACAGAAGAA+CGG	+	chr4.2:1365602-1365621	MS.gene30246:CDS	30.0%
	TTACTTCTTCAAAAGTGAGA+TGG	+	chr4.2:1365311-1365330	MS.gene30246:CDS	30.0%
!	CCTCTAAGAAACTTAATAAC+AGG	-	chr4.2:1364661-1364680	None:intergenic	30.0%
!	TTTGAAGCTTAAGATTGATC+CGG	+	chr4.2:1365110-1365129	MS.gene30246:CDS	30.0%
!!	AAAGCCTTTTGTTGATTACT+TGG	+	chr4.2:1364870-1364889	MS.gene30246:CDS	30.0%
!!	TAGTATTGGTGTTAATCCTA+GGG	+	chr4.2:1364786-1364805	MS.gene30246:CDS	30.0%
!!	TTAGTATTGGTGTTAATCCT+AGG	+	chr4.2:1364785-1364804	MS.gene30246:CDS	30.0%
!!!	CTTTTAGGGTTTAAACTTGA+AGG	+	chr4.2:1364733-1364752	MS.gene30246:CDS	30.0%
!!!	GTTTGATTAGTTTTGGTTTG+AGG	+	chr4.2:1364995-1365014	MS.gene30246:CDS	30.0%
!!!	TATTTTTTAGGGATGAGAGT+TGG	+	chr4.2:1364838-1364857	MS.gene30246:CDS	30.0%
	AAACGACATAGTTTCAGATG+AGG	+	chr4.2:1365563-1365582	MS.gene30246:CDS	35.0%
	ACTTCTTCAAAAGTGAGATG+GGG	+	chr4.2:1365313-1365332	MS.gene30246:CDS	35.0%
	AGATTTGAAGAGAGATTGCA+GGG	+	chr4.2:1365474-1365493	MS.gene30246:CDS	35.0%
	ATCCTAGCTAGAATCTTCTT+AGG	-	chr4.2:1364910-1364929	None:intergenic	35.0%
	CATCATCTTCGATTATCTCA+AGG	+	chr4.2:1364366-1364385	MS.gene30246:CDS	35.0%
	CTACCAAGTAAAAACTCAAC+CGG	-	chr4.2:1365204-1365223	None:intergenic	35.0%
	GAATGAAGGACCTATACTTT+CGG	-	chr4.2:1365514-1365533	None:intergenic	35.0%
	GAATTAAACCTAGATACCAG+AGG	+	chr4.2:1365394-1365413	MS.gene30246:CDS	35.0%
	GATGTGGAGAAAGATGATAT+TGG	+	chr4.2:1364685-1364704	MS.gene30246:CDS	35.0%
	TAAGGATACTGTGTAACCAT+TGG	-	chr4.2:1364820-1364839	None:intergenic	35.0%
	TTCAACCGTTGAAGTTATGA+GGG	+	chr4.2:1364432-1364451	MS.gene30246:CDS	35.0%
	TTCGATTATCTCAAGGGTTT+GGG	+	chr4.2:1364373-1364392	MS.gene30246:CDS	35.0%
!	AAACCGGTTGAGTTTTTACT+TGG	+	chr4.2:1365198-1365217	MS.gene30246:CDS	35.0%
!	GGTTGAGTTTTTACTTGGTA+GGG	+	chr4.2:1365203-1365222	MS.gene30246:CDS	35.0%
!!	GAAGACAATTTAGCCTTAAG+AGG	-	chr4.2:1365072-1365091	None:intergenic	35.0%
!!!	GATTAGTTTTGGTTTGAGGA+AGG	+	chr4.2:1364999-1365018	MS.gene30246:CDS	35.0%
	AAGCTTAAGATTGATCCGGA+AGG	+	chr4.2:1365114-1365133	MS.gene30246:CDS	40.0%
	ACACTACAGCCCAAAATCAA+AGG	-	chr4.2:1364514-1364533	None:intergenic	40.0%
	ACACTAGCATGCAAAACTTG+TGG	-	chr4.2:1364622-1364641	None:intergenic	40.0%
	ACGTTCCCTCATAACTTCAA+CGG	-	chr4.2:1364440-1364459	None:intergenic	40.0%
	AGCTTAAGATTGATCCGGAA+GGG	+	chr4.2:1365115-1365134	MS.gene30246:CDS	40.0%
	ATAGGTCCTTCATTCCGTAT+TGG	+	chr4.2:1365519-1365538	MS.gene30246:CDS	40.0%
	ATTACACCCCATGTAACAGT+AGG	-	chr4.2:1364313-1364332	None:intergenic	40.0%
	CATAGTTTCAGATGAGGAAG+AGG	+	chr4.2:1365569-1365588	MS.gene30246:CDS	40.0%
	CTCAGTATCCGCAGATTATT+GGG	+	chr4.2:1365043-1365062	MS.gene30246:CDS	40.0%
	CTCATAACTTCAACGGTTGA+AGG	-	chr4.2:1364433-1364452	None:intergenic	40.0%
	CTTCAACCGTTGAAGTTATG+AGG	+	chr4.2:1364431-1364450	MS.gene30246:CDS	40.0%
	CTTCGATTATCTCAAGGGTT+TGG	+	chr4.2:1364372-1364391	MS.gene30246:CDS	40.0%
	GAGATTTGAAGAGAGATTGC+AGG	+	chr4.2:1365473-1365492	MS.gene30246:CDS	40.0%
	GCAATCTCTCTTCAAATCTC+TGG	-	chr4.2:1365473-1365492	None:intergenic	40.0%
	GCTCTAATTTCCCACCAATA+CGG	-	chr4.2:1365536-1365555	None:intergenic	40.0%
	GGTGTTAATCCTAGGGATAT+TGG	+	chr4.2:1364793-1364812	MS.gene30246:CDS	40.0%
	GTTACATGGGGTGTAATTCA+AGG	+	chr4.2:1364316-1364335	MS.gene30246:CDS	40.0%
	GTTTCTTAGAGGACTTGATG+TGG	+	chr4.2:1364669-1364688	MS.gene30246:CDS	40.0%
	TCCAAATCCTGCAATTCATC+AGG	-	chr4.2:1364406-1364425	None:intergenic	40.0%
	TCCTGATGAATTGCAGGATT+TGG	+	chr4.2:1364402-1364421	MS.gene30246:CDS	40.0%
!	AACTCCACAAGCTCTTTTAC+AGG	-	chr4.2:1365342-1365361	None:intergenic	40.0%
!	CGGTTGAGTTTTTACTTGGT+AGG	+	chr4.2:1365202-1365221	MS.gene30246:CDS	40.0%
!	GAAGATTCTAGCTAGGATGT+TGG	+	chr4.2:1364912-1364931	MS.gene30246:CDS	40.0%
!	GATTATTGGGTTGCCTCTTA+AGG	+	chr4.2:1365056-1365075	MS.gene30246:CDS	40.0%
!	GGGATTTCTAGGTCTAAACT+TGG	+	chr4.2:1364577-1364596	MS.gene30246:CDS	40.0%
!	TCTGAAACTATGTCGTTTCC+TGG	-	chr4.2:1365561-1365580	None:intergenic	40.0%
!	TGATTTTGGGCTGTAGTGTT+CGG	+	chr4.2:1364515-1364534	MS.gene30246:CDS	40.0%
!	TGCCTAAGAAGATTCTAGCT+AGG	+	chr4.2:1364905-1364924	MS.gene30246:CDS	40.0%
	ACCATTGGACCAATATCCCT+AGG	-	chr4.2:1364805-1364824	None:intergenic	45.0%
	AGAGGCAACCCAATAATCTG+CGG	-	chr4.2:1365054-1365073	None:intergenic	45.0%
	ATACCAGAGGCTTAAGAGCA+AGG	+	chr4.2:1365407-1365426	MS.gene30246:CDS	45.0%
	CAAAGAGAAACTCGTTTCGC+GGG	+	chr4.2:1364342-1364361	MS.gene30246:CDS	45.0%
	CTCTTAAGCCTCTGGTATCT+AGG	-	chr4.2:1365405-1365424	None:intergenic	45.0%
	GAGGAAGGAATGTTTGCCTT+CGG	+	chr4.2:1365014-1365033	MS.gene30246:CDS	45.0%
	GCAAAGAGAAACTCGTTTCG+CGG	+	chr4.2:1364341-1364360	MS.gene30246:CDS	45.0%
	GCTCAGTATCCGCAGATTAT+TGG	+	chr4.2:1365042-1365061	MS.gene30246:CDS	45.0%
	GGATACTGAGCAATAACCGA+AGG	-	chr4.2:1365033-1365052	None:intergenic	45.0%
	TACCAGAGGCTTAAGAGCAA+GGG	+	chr4.2:1365408-1365427	MS.gene30246:CDS	45.0%
	TCCTAGGGATATTGGTCCAA+TGG	+	chr4.2:1364801-1364820	MS.gene30246:CDS	45.0%
	TCTTCAAAAGTGAGATGGGG+AGG	+	chr4.2:1365316-1365335	MS.gene30246:CDS	45.0%
	TGATGAAGACTAACCACCTG+TGG	-	chr4.2:1365165-1365184	None:intergenic	45.0%
	TTCCCACCAATACGGAATGA+AGG	-	chr4.2:1365528-1365547	None:intergenic	45.0%
!	GTCCTTCATTCCGTATTGGT+GGG	+	chr4.2:1365523-1365542	MS.gene30246:CDS	45.0%
	ACCAGAGGCTTAAGAGCAAG+GGG	+	chr4.2:1365409-1365428	MS.gene30246:CDS	50.0%
	ACTCGCAGCGCAATCAATTG+AGG	-	chr4.2:1365270-1365289	None:intergenic	50.0%
	ATACTAGCCACATCCTGCGA+CGG	-	chr4.2:1365234-1365253	None:intergenic	50.0%
	GAGGCCTGTAAAAGAGCTTG+TGG	+	chr4.2:1365335-1365354	MS.gene30246:CDS	50.0%
	GGTCCTTCATTCCGTATTGG+TGG	+	chr4.2:1365522-1365541	MS.gene30246:CDS	50.0%
	GGTGGGAAATTAGAGCTACC+AGG	+	chr4.2:1365540-1365559	MS.gene30246:CDS	50.0%
	GTCGCAGGATGTGGCTAGTA+TGG	+	chr4.2:1365233-1365252	MS.gene30246:CDS	55.0%
	TCCCCTTGCTCTTAAGCCTC+TGG	-	chr4.2:1365413-1365432	None:intergenic	55.0%
	TGATCCGGAAGGGTTTGCGA+GGG	+	chr4.2:1365125-1365144	MS.gene30246:CDS	55.0%
	TTGATCCGGAAGGGTTTGCG+AGG	+	chr4.2:1365124-1365143	MS.gene30246:CDS	55.0%
	ACCACCCTCGCAAACCCTTC+CGG	-	chr4.2:1365132-1365151	None:intergenic	60.0%
	GGCAATACCGTCGCAGGATG+TGG	+	chr4.2:1365224-1365243	MS.gene30246:CDS	60.0%
	GGTGGAGAAGATGCCACAGG+TGG	+	chr4.2:1365149-1365168	MS.gene30246:CDS	60.0%
	TGGTAGGGCAATACCGTCGC+AGG	+	chr4.2:1365218-1365237	MS.gene30246:CDS	60.0%
!!	GGTGGTGGAGAAGATGCCAC+AGG	+	chr4.2:1365146-1365165	MS.gene30246:CDS	60.0%
	GGAAGGGTTTGCGAGGGTGG+TGG	+	chr4.2:1365131-1365150	MS.gene30246:CDS	65.0%
	TCCGGAAGGGTTTGCGAGGG+TGG	+	chr4.2:1365128-1365147	MS.gene30246:CDS	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr4.2	gene	1364307	1365635	1364307	ID=MS.gene30246
chr4.2	mRNA	1364307	1365635	1364307	ID=MS.gene30246.t1;Parent=MS.gene30246
chr4.2	exon	1364307	1365635	1364307	ID=MS.gene30246.t1.exon1;Parent=MS.gene30246.t1
chr4.2	CDS	1364307	1365635	1364307	ID=cds.MS.gene30246.t1;Parent=MS.gene30246.t1

Gene Sequence

>MS.gene30246

ATGCCTACTGTTACATGGGGTGTAATTCAAGGTCGCAAAGAGAAACTCGTTTCGCGGGTCATCATCTTCGATTATCTCAAGGGTTTGGGAATTATTCCTGATGAATTGCAGGATTTGGAGCTTCCTTCAACCGTTGAAGTTATGAGGGAACGTGTTGAGTTTATTCAGAAATTAGGGTTAACGATTGATGATATAAATCAGTATCCTTTGATTTTGGGCTGTAGTGTTCGGAAAAACATGATTCCTGTTTTAGGGTATTTAGAAAAAATTGGGATTTCTAGGTCTAAACTTGGTGAATTTATTAAGAATTATCCACAAGTTTTGCATGCTAGTGTTATTGTTGAGCTTGCTCCTGTTATTAAGTTTCTTAGAGGACTTGATGTGGAGAAAGATGATATTGGATTTGTGTTGCAAAAATATCCTCAACTTTTAGGGTTTAAACTTGAAGGTACTATGAGTACTTCAGTAGCTTATCTTGTTAGTATTGGTGTTAATCCTAGGGATATTGGTCCAATGGTTACACAGTATCCTTATTTTTTAGGGATGAGAGTTGGTACTATGATAAAGCCTTTTGTTGATTACTTGGTTAATTTAGGGTTGCCTAAGAAGATTCTAGCTAGGATGTTGGAGAAAAGAGCTTATTTACTTGGCTATGATCTTGAAGAGACTGTGAAACCTAATGTTGATTGTTTGATTAGTTTTGGTTTGAGGAAGGAATGTTTGCCTTCGGTTATTGCTCAGTATCCGCAGATTATTGGGTTGCCTCTTAAGGCTAAATTGTCTTCCCAACAATATTTTTTCAGTTTGAAGCTTAAGATTGATCCGGAAGGGTTTGCGAGGGTGGTGGAGAAGATGCCACAGGTGGTTAGTCTTCATCAAAATGTGATTATGAAACCGGTTGAGTTTTTACTTGGTAGGGCAATACCGTCGCAGGATGTGGCTAGTATGGTGATCAAGTGTCCTCAATTGATTGCGCTGCGAGTTGAGCTCATGAAGAACAGTTATTACTTCTTCAAAAGTGAGATGGGGAGGCCTGTAAAAGAGCTTGTGGAGTTTCCAGAATACTTCACTTATAGTTTGGAATCAAGAATTAAACCTAGATACCAGAGGCTTAAGAGCAAGGGGATAAAATGTTCGTTGAATTGGATGCTGAATTGTAGTGACCAGAGATTTGAAGAGAGATTGCAGGGCAATTATATTGAAACCGAAAGTATAGGTCCTTCATTCCGTATTGGTGGGAAATTAGAGCTACCAGGAAACGACATAGTTTCAGATGAGGAAGAGGAGAGTGATGATGAAATGCTATACAGAAGAACGGTTTCTCTTTAG

Protein sequence

>MS.gene30246.t1

MPTVTWGVIQGRKEKLVSRVIIFDYLKGLGIIPDELQDLELPSTVEVMRERVEFIQKLGLTIDDINQYPLILGCSVRKNMIPVLGYLEKIGISRSKLGEFIKNYPQVLHASVIVELAPVIKFLRGLDVEKDDIGFVLQKYPQLLGFKLEGTMSTSVAYLVSIGVNPRDIGPMVTQYPYFLGMRVGTMIKPFVDYLVNLGLPKKILARMLEKRAYLLGYDLEETVKPNVDCLISFGLRKECLPSVIAQYPQIIGLPLKAKLSSQQYFFSLKLKIDPEGFARVVEKMPQVVSLHQNVIMKPVEFLLGRAIPSQDVASMVIKCPQLIALRVELMKNSYYFFKSEMGRPVKELVEFPEYFTYSLESRIKPRYQRLKSKGIKCSLNWMLNCSDQRFEERLQGNYIETESIGPSFRIGGKLELPGNDIVSDEEEESDDEMLYRRTVSL