Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30961.t1 | XP_013465396.1 | 92.8 | 693 | 45 | 3 | 1 | 689 | 1 | 692 | 0.00E+00 | 1216.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30961.t1 | F4HSD5 | 27.0 | 703 | 343 | 28 | 1 | 687 | 1 | 549 | 1.2e-28 | 129.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30961.t1 | A0A072VCX1 | 92.8 | 693 | 45 | 3 | 1 | 689 | 1 | 692 | 0.0e+00 | 1216.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049413 | MS.gene30961 | 0.807503 | 4.90E-50 | -1.69E-46 |
| MS.gene051821 | MS.gene30961 | 0.806908 | 6.54E-50 | -1.69E-46 |
| MS.gene052040 | MS.gene30961 | 0.80914 | 2.19E-50 | -1.69E-46 |
| MS.gene052118 | MS.gene30961 | 0.863725 | 2.03E-64 | -1.69E-46 |
| MS.gene054489 | MS.gene30961 | 0.815736 | 7.94E-52 | -1.69E-46 |
| MS.gene054892 | MS.gene30961 | 0.841573 | 4.38E-58 | -1.69E-46 |
| MS.gene054893 | MS.gene30961 | 0.839221 | 1.80E-57 | -1.69E-46 |
| MS.gene05686 | MS.gene30961 | 0.801415 | 9.10E-49 | -1.69E-46 |
| MS.gene057174 | MS.gene30961 | 0.800913 | 1.15E-48 | -1.69E-46 |
| MS.gene058095 | MS.gene30961 | 0.818027 | 2.43E-52 | -1.69E-46 |
| MS.gene05878 | MS.gene30961 | 0.816987 | 4.16E-52 | -1.69E-46 |
| MS.gene05952 | MS.gene30961 | 0.822813 | 1.94E-53 | -1.69E-46 |
| MS.gene05956 | MS.gene30961 | 0.809045 | 2.30E-50 | -1.69E-46 |
| MS.gene059686 | MS.gene30961 | 0.815506 | 8.93E-52 | -1.69E-46 |
| MS.gene060413 | MS.gene30961 | 0.801442 | 8.99E-49 | -1.69E-46 |
| MS.gene060522 | MS.gene30961 | 0.832647 | 8.39E-56 | -1.69E-46 |
| MS.gene060785 | MS.gene30961 | 0.805676 | 1.19E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30961.t1 | MTR_2g096870 | 92.785 | 693 | 45 | 3 | 1 | 689 | 1 | 692 | 0.0 | 1305 |
| MS.gene30961.t1 | MTR_2g096870 | 87.962 | 731 | 45 | 4 | 1 | 689 | 1 | 730 | 0.0 | 1285 |
| MS.gene30961.t1 | MTR_1g047660 | 40.361 | 166 | 98 | 1 | 525 | 689 | 682 | 847 | 2.64e-34 | 140 |
| MS.gene30961.t1 | MTR_4g021865 | 34.637 | 179 | 97 | 4 | 510 | 688 | 270 | 428 | 1.70e-24 | 107 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30961.t1 | AT5G02390 | 29.599 | 598 | 323 | 23 | 118 | 679 | 289 | 824 | 1.11e-50 | 189 |
| MS.gene30961.t1 | AT5G02390 | 29.599 | 598 | 323 | 23 | 118 | 679 | 289 | 824 | 1.11e-50 | 189 |
| MS.gene30961.t1 | AT1G07620 | 26.695 | 708 | 365 | 27 | 1 | 687 | 1 | 575 | 5.15e-39 | 152 |
| MS.gene30961.t1 | AT1G07620 | 26.695 | 708 | 339 | 29 | 1 | 687 | 1 | 549 | 5.12e-37 | 146 |
| MS.gene30961.t1 | AT1G07620 | 26.695 | 708 | 339 | 29 | 1 | 687 | 1 | 549 | 5.12e-37 | 146 |
| MS.gene30961.t1 | AT1G07620 | 26.695 | 708 | 339 | 29 | 1 | 687 | 1 | 549 | 5.12e-37 | 146 |
| MS.gene30961.t1 | AT5G02390 | 26.667 | 510 | 277 | 22 | 118 | 592 | 289 | 736 | 5.92e-22 | 101 |
Find 101 sgRNAs with CRISPR-Local
Find 143 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCTTTGACATATTTGAAAT+TGG | 0.199181 | 2.2:+5259904 | None:intergenic |
| ACCTTGGAAGGCGCGGTTAA+AGG | 0.224919 | 2.2:+5261206 | None:intergenic |
| GGTCTAAGCAAACCGAAATT+TGG | 0.233160 | 2.2:-5261157 | MS.gene30961:CDS |
| AGTGATTTATCAATCTTTAA+AGG | 0.241353 | 2.2:+5260420 | None:intergenic |
| ACTATCTTGTTAAAGAAGTA+TGG | 0.258917 | 2.2:-5259607 | MS.gene30961:CDS |
| TTGTCTTGACAGCTAATTTC+AGG | 0.275591 | 2.2:+5260270 | None:intergenic |
| TTCTTCTAAAGCTGTGAATA+AGG | 0.278916 | 2.2:+5259805 | None:intergenic |
| TAGTTGAATGCAAAGGGTTT+TGG | 0.302998 | 2.2:+5259656 | None:intergenic |
| AATTGAAATGTCTCTGTTAA+GGG | 0.304642 | 2.2:+5261376 | None:intergenic |
| TTAACAAGATAGTTCCCTTT+AGG | 0.319585 | 2.2:+5259617 | None:intergenic |
| GTCTACCGTGTATGGCATTT+GGG | 0.321199 | 2.2:+5259844 | None:intergenic |
| CTTGGGAAAGTGCCAAATTT+CGG | 0.322890 | 2.2:+5261145 | None:intergenic |
| GGTCTACCGTGTATGGCATT+TGG | 0.328254 | 2.2:+5259843 | None:intergenic |
| TAATTGAAATGTCTCTGTTA+AGG | 0.329455 | 2.2:+5261375 | None:intergenic |
| TTATGAAACGCCGAAGCTTT+CGG | 0.334227 | 2.2:-5261054 | MS.gene30961:CDS |
| TATTCTTGATTATCATCGTT+GGG | 0.343497 | 2.2:-5262004 | MS.gene30961:CDS |
| AAGCTTTCGGCGAGCGATCT+TGG | 0.344645 | 2.2:-5261041 | MS.gene30961:CDS |
| CCACTTGATTCCATCCTTTG+TGG | 0.349946 | 2.2:+5260952 | None:intergenic |
| TAGGCTAGCTTCATGTTTGT+TGG | 0.375152 | 2.2:+5260734 | None:intergenic |
| AAAGCGAAATTGACAAAATC+AGG | 0.380909 | 2.2:-5261236 | MS.gene30961:CDS |
| ATTGGCTGGTCTACCGTGTA+TGG | 0.382655 | 2.2:+5259836 | None:intergenic |
| AACTCAAACCAATGCCTAAA+GGG | 0.384062 | 2.2:-5259631 | MS.gene30961:CDS |
| GTGAATAAGGAAGGTTTCAT+TGG | 0.396105 | 2.2:+5259818 | None:intergenic |
| GAGATGATGTTCTTCGCATT+AGG | 0.406169 | 2.2:+5260715 | None:intergenic |
| ATGCCTAATCTTGAGTCCTT+AGG | 0.420369 | 2.2:-5260534 | MS.gene30961:CDS |
| AGATCGCTCGCCGAAAGCTT+CGG | 0.452317 | 2.2:+5261044 | None:intergenic |
| ATCATCGTTGGGGTGTCAAA+AGG | 0.453879 | 2.2:-5261993 | MS.gene30961:CDS |
| AGATAGTTCCCTTTAGGCAT+TGG | 0.454693 | 2.2:+5259623 | None:intergenic |
| AATATCAAATGCTAAAGGTC+AGG | 0.458115 | 2.2:-5261456 | MS.gene30961:CDS |
| AATCTTTAAACATACCTTGA+GGG | 0.459378 | 2.2:+5261595 | None:intergenic |
| ATATTCTTGATTATCATCGT+TGG | 0.463067 | 2.2:-5262005 | MS.gene30961:CDS |
| CGAAATTTGGCACTTTCCCA+AGG | 0.470153 | 2.2:-5261144 | MS.gene30961:CDS |
| CAGACATTAGATGATGTTGT+TGG | 0.474147 | 2.2:-5259542 | MS.gene30961:CDS |
| AATCCTAAGGACTCAAGATT+AGG | 0.474891 | 2.2:+5260531 | None:intergenic |
| AGATCTCTTTCTCGTTATTG+TGG | 0.476200 | 2.2:+5260838 | None:intergenic |
| ATAAGGAAGGTTTCATTGGC+TGG | 0.476766 | 2.2:+5259822 | None:intergenic |
| TCCTAGTTCTTTATCTGCTG+TGG | 0.479016 | 2.2:-5260337 | MS.gene30961:CDS |
| GTCAATTTCGCTTTGTTGTG+AGG | 0.479415 | 2.2:+5261245 | None:intergenic |
| AAAGTTGCTAGCTGGAACTC+AGG | 0.480623 | 2.2:-5261117 | MS.gene30961:CDS |
| AGTTTGTAGTTGAATGCAAA+GGG | 0.481518 | 2.2:+5259650 | None:intergenic |
| GAAGGCTTTGAAGAAATACT+TGG | 0.482916 | 2.2:+5260987 | None:intergenic |
| AAACTCAAACCAATGCCTAA+AGG | 0.488700 | 2.2:-5259632 | MS.gene30961:CDS |
| TGGTTGGATGAATCTTCAAC+AGG | 0.489385 | 2.2:-5259498 | MS.gene30961:CDS |
| GCTAAAGGTCAGGCTAGTAG+TGG | 0.495455 | 2.2:-5261446 | MS.gene30961:CDS |
| TCCTTTAACCGCGCCTTCCA+AGG | 0.498449 | 2.2:-5261207 | MS.gene30961:CDS |
| TAAATTTGTTACCTTCTGCT+TGG | 0.498904 | 2.2:+5260238 | None:intergenic |
| ATTAGTTCAGAGGAATCTAC+AGG | 0.503053 | 2.2:-5262072 | MS.gene30961:CDS |
| ACATTAGCTCTAGTACCTTC+CGG | 0.504712 | 2.2:-5261178 | MS.gene30961:CDS |
| TCTAAAGCTGTGAATAAGGA+AGG | 0.504713 | 2.2:+5259809 | None:intergenic |
| TTGTGGCTTACTCCTTCAGA+AGG | 0.507237 | 2.2:+5260969 | None:intergenic |
| AACAAATGAAGAAAATAATA+CGG | 0.513989 | 2.2:-5260484 | MS.gene30961:CDS |
| AAATTTCGGTTTGCTTAGAC+CGG | 0.520967 | 2.2:+5261159 | None:intergenic |
| CAAATTCAAGAAGTTAATCA+AGG | 0.522924 | 2.2:-5262048 | MS.gene30961:CDS |
| GAAGTTGATGAAACAGTTGA+AGG | 0.525274 | 2.2:-5260378 | MS.gene30961:CDS |
| AGCTGTCAAGACAATACAAT+CGG | 0.528083 | 2.2:-5260261 | MS.gene30961:CDS |
| AAGGAGTAAGCCACAAAGGA+TGG | 0.528298 | 2.2:-5260962 | MS.gene30961:CDS |
| GATGAATCTTCAACAGGAAG+AGG | 0.528776 | 2.2:-5259492 | MS.gene30961:CDS |
| ATGATAAGATTCACAAGAGT+AGG | 0.532170 | 2.2:-5260590 | MS.gene30961:CDS |
| ATTTCTTCAAAGCCTTCTGA+AGG | 0.533424 | 2.2:-5260981 | MS.gene30961:CDS |
| TCATCGTTGGGGTGTCAAAA+GGG | 0.534999 | 2.2:-5261992 | MS.gene30961:CDS |
| GCACTTCATCGGAAGAAAGA+TGG | 0.537156 | 2.2:-5261419 | MS.gene30961:CDS |
| AGAGAAATATCAAATGCTAA+AGG | 0.539737 | 2.2:-5261461 | MS.gene30961:CDS |
| AAGTTAATCAAGGATGTATG+TGG | 0.539941 | 2.2:-5262038 | MS.gene30961:CDS |
| CTATCTTGTTAAAGAAGTAT+GGG | 0.540514 | 2.2:-5259606 | MS.gene30961:CDS |
| TTCGGTTTGCTTAGACCGGA+AGG | 0.541362 | 2.2:+5261163 | None:intergenic |
| GAAGATAAAACATGCACTTG+TGG | 0.545595 | 2.2:-5260901 | MS.gene30961:CDS |
| AAAACACTTGATTAGTTCAG+AGG | 0.547935 | 2.2:-5262082 | MS.gene30961:CDS |
| TCCACAGCAGATAAAGAACT+AGG | 0.548583 | 2.2:+5260336 | None:intergenic |
| ATCATCTCTTAACGAATCGA+TGG | 0.553700 | 2.2:-5260700 | MS.gene30961:CDS |
| TTTCTAAGAGATATAGACAT+TGG | 0.556008 | 2.2:-5261290 | MS.gene30961:CDS |
| TCTAATGTCTGATCTAACTC+TGG | 0.557841 | 2.2:+5259554 | None:intergenic |
| ATTCTTGATTATCATCGTTG+GGG | 0.567532 | 2.2:-5262003 | MS.gene30961:CDS |
| CTAAGAGATATAGACATTGG+TGG | 0.569025 | 2.2:-5261287 | MS.gene30961:CDS |
| GCACGAGCAAAGAGATCAAG+TGG | 0.575717 | 2.2:-5260650 | MS.gene30961:CDS |
| AGTTAATCAAGGATGTATGT+GGG | 0.578331 | 2.2:-5262037 | MS.gene30961:CDS |
| AATACAATCGGCCAAGCAGA+AGG | 0.578706 | 2.2:-5260249 | MS.gene30961:intron |
| ATCTCACAAAGCTTAGATGT+TGG | 0.579095 | 2.2:-5260819 | MS.gene30961:CDS |
| GAAATTTGGCACTTTCCCAA+GGG | 0.581947 | 2.2:-5261143 | MS.gene30961:CDS |
| GAGTTTGTAGTTGAATGCAA+AGG | 0.582588 | 2.2:+5259649 | None:intergenic |
| GTGTGTAGCACTTGAACTTG+AGG | 0.590237 | 2.2:-5259468 | MS.gene30961:CDS |
| ATTTGACGAAAAGAAGTGGT+TGG | 0.594040 | 2.2:-5259514 | MS.gene30961:CDS |
| GATGAAACAGTTGAAGGGAG+TGG | 0.594980 | 2.2:-5260372 | MS.gene30961:CDS |
| GTAGTGGGAATGCACTTCAT+CGG | 0.597185 | 2.2:-5261430 | MS.gene30961:CDS |
| CATGACTACTAATCTTAGCA+AGG | 0.600526 | 2.2:-5260307 | MS.gene30961:CDS |
| CTAAAGGTCAGGCTAGTAGT+GGG | 0.612454 | 2.2:-5261445 | MS.gene30961:CDS |
| AAGTTGATGAAACAGTTGAA+GGG | 0.625255 | 2.2:-5260377 | MS.gene30961:CDS |
| TCTTGGAATCGATAGTGTCA+TGG | 0.628298 | 2.2:-5261024 | MS.gene30961:CDS |
| TCATCGGAAGAAAGATGGCA+AGG | 0.628410 | 2.2:-5261414 | MS.gene30961:CDS |
| AAAGAGTAAGAGCTTGAGTG+AGG | 0.644516 | 2.2:-5260778 | MS.gene30961:CDS |
| TACAGATGCAGAATCCCTCA+AGG | 0.647198 | 2.2:-5261609 | MS.gene30961:intron |
| GTTAATCAAGGATGTATGTG+GGG | 0.647876 | 2.2:-5262036 | MS.gene30961:CDS |
| ATCATGTAGAATGAATCCTA+AGG | 0.650965 | 2.2:+5260518 | None:intergenic |
| CGTGATTTGACGAAAAGAAG+TGG | 0.655367 | 2.2:-5259518 | MS.gene30961:CDS |
| CCACAAAGGATGGAATCAAG+TGG | 0.658566 | 2.2:-5260952 | MS.gene30961:CDS |
| TCTGAAGGAGTAAGCCACAA+AGG | 0.665084 | 2.2:-5260966 | MS.gene30961:CDS |
| AAATTTGGCACTTTCCCAAG+GGG | 0.665909 | 2.2:-5261142 | MS.gene30961:CDS |
| AATTTGGCACTTTCCCAAGG+GGG | 0.673506 | 2.2:-5261141 | MS.gene30961:CDS |
| AAATTGCTTCTAGAAAACAT+AGG | 0.675542 | 2.2:+5260561 | None:intergenic |
| GCAGACCCAAATGCCATACA+CGG | 0.677347 | 2.2:-5259849 | MS.gene30961:CDS |
| AAATGAAGAAAATAATACGG+TGG | 0.680803 | 2.2:-5260481 | MS.gene30961:CDS |
| GACTACTAATCTTAGCAAGG+AGG | 0.711361 | 2.2:-5260304 | MS.gene30961:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACATGATAAAAATATATATA+AGG | - | chr2.2:5259690-5259709 | MS.gene30961:CDS | 10.0% |
| !! | ATGATAAAAATATATATAAG+GGG | - | chr2.2:5259692-5259711 | MS.gene30961:CDS | 10.0% |
| !! | CATGATAAAAATATATATAA+GGG | - | chr2.2:5259691-5259710 | MS.gene30961:CDS | 10.0% |
| !! | AACAAATGAAGAAAATAATA+CGG | - | chr2.2:5261027-5261046 | MS.gene30961:CDS | 15.0% |
| !! | TTCTACTTTAAATAATTCTA+AGG | + | chr2.2:5259794-5259813 | None:intergenic | 15.0% |
| !!! | AATTCTTTATTTATTTGTGA+CGG | + | chr2.2:5259963-5259982 | None:intergenic | 15.0% |
| !!! | AGATTCATGATTATATTTTA+TGG | - | chr2.2:5259934-5259953 | MS.gene30961:CDS | 15.0% |
| !!! | ATCATTACTAATCTTTTTTT+TGG | - | chr2.2:5261459-5261478 | MS.gene30961:CDS | 15.0% |
| !!! | TTTAAATAATTCTAAGGTAT+AGG | + | chr2.2:5259788-5259807 | None:intergenic | 15.0% |
| !!! | TTTTAATGATTATAAAGCAA+TGG | + | chr2.2:5259664-5259683 | None:intergenic | 15.0% |
| !! | AGTGATTTATCAATCTTTAA+AGG | + | chr2.2:5261094-5261113 | None:intergenic | 20.0% |
| ! | AAATGAAGAAAATAATACGG+TGG | - | chr2.2:5261030-5261049 | MS.gene30961:CDS | 25.0% |
| ! | AATCTTTAAACATACCTTGA+GGG | + | chr2.2:5259919-5259938 | None:intergenic | 25.0% |
| ! | AATTGAAATGTCTCTGTTAA+GGG | + | chr2.2:5260138-5260157 | None:intergenic | 25.0% |
| ! | ACTATCTTGTTAAAGAAGTA+TGG | - | chr2.2:5261904-5261923 | MS.gene30961:intron | 25.0% |
| ! | AGAGAAATATCAAATGCTAA+AGG | - | chr2.2:5260050-5260069 | MS.gene30961:intron | 25.0% |
| ! | ATAAAAGAAGAAACATAGTG+TGG | + | chr2.2:5259593-5259612 | None:intergenic | 25.0% |
| ! | ATATTCTTGATTATCATCGT+TGG | - | chr2.2:5259506-5259525 | MS.gene30961:CDS | 25.0% |
| ! | CAAATTCAAGAAGTTAATCA+AGG | - | chr2.2:5259463-5259482 | MS.gene30961:CDS | 25.0% |
| ! | CTATATATATATACCAGGAA+AGG | - | chr2.2:5261482-5261501 | MS.gene30961:intron | 25.0% |
| ! | TAATTGAAATGTCTCTGTTA+AGG | + | chr2.2:5260139-5260158 | None:intergenic | 25.0% |
| ! | TATTCTTGATTATCATCGTT+GGG | - | chr2.2:5259507-5259526 | MS.gene30961:CDS | 25.0% |
| ! | TTTGGCTATATATATATACC+AGG | - | chr2.2:5261477-5261496 | MS.gene30961:intron | 25.0% |
| !! | AAAGACATTCTTGAATTTTC+GGG | - | chr2.2:5261624-5261643 | MS.gene30961:CDS | 25.0% |
| !! | AAATTGCTTCTAGAAAACAT+AGG | + | chr2.2:5260953-5260972 | None:intergenic | 25.0% |
| !! | CAAAGACATTCTTGAATTTT+CGG | - | chr2.2:5261623-5261642 | MS.gene30961:CDS | 25.0% |
| !! | CTATCTTGTTAAAGAAGTAT+GGG | - | chr2.2:5261905-5261924 | MS.gene30961:intron | 25.0% |
| !! | GTCTTTGACATATTTGAAAT+TGG | + | chr2.2:5261610-5261629 | None:intergenic | 25.0% |
| !! | TCTTTTTCTTATCTGCATAT+AGG | + | chr2.2:5259854-5259873 | None:intergenic | 25.0% |
| !! | TTTCTAAGAGATATAGACAT+TGG | - | chr2.2:5260221-5260240 | MS.gene30961:intron | 25.0% |
| !!! | ATCACTTGAACATTTTAAAG+AGG | - | chr2.2:5261108-5261127 | MS.gene30961:CDS | 25.0% |
| !!! | CAAAAACAATGATGATGTTT+TGG | - | chr2.2:5260163-5260182 | MS.gene30961:intron | 25.0% |
| AAAGCGAAATTGACAAAATC+AGG | - | chr2.2:5260275-5260294 | MS.gene30961:CDS | 30.0% | |
| AAGTTAATCAAGGATGTATG+TGG | - | chr2.2:5259473-5259492 | MS.gene30961:CDS | 30.0% | |
| AATATCAAATGCTAAAGGTC+AGG | - | chr2.2:5260055-5260074 | MS.gene30961:intron | 30.0% | |
| ACTAACGTAACATTTCTTTG+AGG | - | chr2.2:5261312-5261331 | MS.gene30961:CDS | 30.0% | |
| AGTTAATCAAGGATGTATGT+GGG | - | chr2.2:5259474-5259493 | MS.gene30961:CDS | 30.0% | |
| AGTTTGTAGTTGAATGCAAA+GGG | + | chr2.2:5261864-5261883 | None:intergenic | 30.0% | |
| ATCATGTAGAATGAATCCTA+AGG | + | chr2.2:5260996-5261015 | None:intergenic | 30.0% | |
| ATGATAAGATTCACAAGAGT+AGG | - | chr2.2:5260921-5260940 | MS.gene30961:CDS | 30.0% | |
| ATTCTTGATTATCATCGTTG+GGG | - | chr2.2:5259508-5259527 | MS.gene30961:CDS | 30.0% | |
| CAGCTGTTTATATACACAAA+AGG | + | chr2.2:5259743-5259762 | None:intergenic | 30.0% | |
| GAATCTTTAAACATACCTTG+AGG | + | chr2.2:5259920-5259939 | None:intergenic | 30.0% | |
| TGACCAAGTTAAAAAGAAGT+TGG | + | chr2.2:5261791-5261810 | None:intergenic | 30.0% | |
| TTAACAAGATAGTTCCCTTT+AGG | + | chr2.2:5261897-5261916 | None:intergenic | 30.0% | |
| ! | AAAACACTTGATTAGTTCAG+AGG | - | chr2.2:5259429-5259448 | MS.gene30961:CDS | 30.0% |
| ! | CATCTGTAACAACATTTTGT+TGG | + | chr2.2:5259890-5259909 | None:intergenic | 30.0% |
| !! | AAACAATGATGATGTTTTGG+AGG | - | chr2.2:5260166-5260185 | MS.gene30961:intron | 30.0% |
| !! | AAGTTGATGAAACAGTTGAA+GGG | - | chr2.2:5261134-5261153 | MS.gene30961:CDS | 30.0% |
| !! | TAAATTTGTTACCTTCTGCT+TGG | + | chr2.2:5261276-5261295 | None:intergenic | 30.0% |
| !! | TCACCAACTTCTTTTTAACT+TGG | - | chr2.2:5261785-5261804 | MS.gene30961:intron | 30.0% |
| !! | TTCTTCTAAAGCTGTGAATA+AGG | + | chr2.2:5261709-5261728 | None:intergenic | 30.0% |
| !!! | AAACTTGATCCAAGCTTTTT+TGG | + | chr2.2:5260422-5260441 | None:intergenic | 30.0% |
| !!! | AAGGGTTTTGGAAAATAAGT+TGG | + | chr2.2:5261846-5261865 | None:intergenic | 30.0% |
| !!! | ATTTTGTTGGTCTTGCAAAA+TGG | + | chr2.2:5259877-5259896 | None:intergenic | 30.0% |
| !!! | TGTTTTGGAGGTAATTAATG+TGG | - | chr2.2:5260178-5260197 | MS.gene30961:intron | 30.0% |
| AAACTCAAACCAATGCCTAA+AGG | - | chr2.2:5261879-5261898 | MS.gene30961:intron | 35.0% | |
| AACTCAAACCAATGCCTAAA+GGG | - | chr2.2:5261880-5261899 | MS.gene30961:intron | 35.0% | |
| AATCCTAAGGACTCAAGATT+AGG | + | chr2.2:5260983-5261002 | None:intergenic | 35.0% | |
| ACAAAAGGTTCTTGATGAGA+TGG | + | chr2.2:5259728-5259747 | None:intergenic | 35.0% | |
| AGATCTCTTTCTCGTTATTG+TGG | + | chr2.2:5260676-5260695 | None:intergenic | 35.0% | |
| AGCTGTCAAGACAATACAAT+CGG | - | chr2.2:5261250-5261269 | MS.gene30961:CDS | 35.0% | |
| ATCATCTCTTAACGAATCGA+TGG | - | chr2.2:5260811-5260830 | MS.gene30961:CDS | 35.0% | |
| ATCTCACAAAGCTTAGATGT+TGG | - | chr2.2:5260692-5260711 | MS.gene30961:CDS | 35.0% | |
| ATTAGTTCAGAGGAATCTAC+AGG | - | chr2.2:5259439-5259458 | MS.gene30961:CDS | 35.0% | |
| ATTTCTTCAAAGCCTTCTGA+AGG | - | chr2.2:5260530-5260549 | MS.gene30961:CDS | 35.0% | |
| ATTTGACGAAAAGAAGTGGT+TGG | - | chr2.2:5261997-5262016 | MS.gene30961:CDS | 35.0% | |
| CAGACATTAGATGATGTTGT+TGG | - | chr2.2:5261969-5261988 | MS.gene30961:CDS | 35.0% | |
| CATGACTACTAATCTTAGCA+AGG | - | chr2.2:5261204-5261223 | MS.gene30961:CDS | 35.0% | |
| CTAAGAGATATAGACATTGG+TGG | - | chr2.2:5260224-5260243 | MS.gene30961:intron | 35.0% | |
| CTTGTGGAACTCAAAAAAAG+TGG | - | chr2.2:5260626-5260645 | MS.gene30961:CDS | 35.0% | |
| GAAGATAAAACATGCACTTG+TGG | - | chr2.2:5260610-5260629 | MS.gene30961:CDS | 35.0% | |
| GAGTTTGTAGTTGAATGCAA+AGG | + | chr2.2:5261865-5261884 | None:intergenic | 35.0% | |
| GGTATGAAATTGCTTACATC+TGG | + | chr2.2:5259572-5259591 | None:intergenic | 35.0% | |
| GTGAATAAGGAAGGTTTCAT+TGG | + | chr2.2:5261696-5261715 | None:intergenic | 35.0% | |
| GTTAATCAAGGATGTATGTG+GGG | - | chr2.2:5259475-5259494 | MS.gene30961:CDS | 35.0% | |
| TCTAATGTCTGATCTAACTC+TGG | + | chr2.2:5261960-5261979 | None:intergenic | 35.0% | |
| TTGTCTTGACAGCTAATTTC+AGG | + | chr2.2:5261244-5261263 | None:intergenic | 35.0% | |
| ! | AAATTTCGGTTTGCTTAGAC+CGG | + | chr2.2:5260355-5260374 | None:intergenic | 35.0% |
| ! | AGAGCTAATGTTTTTCACCT+TGG | + | chr2.2:5260324-5260343 | None:intergenic | 35.0% |
| ! | CTAATGTTTTTCACCTTGGA+AGG | + | chr2.2:5260320-5260339 | None:intergenic | 35.0% |
| ! | TAGTTGAATGCAAAGGGTTT+TGG | + | chr2.2:5261858-5261877 | None:intergenic | 35.0% |
| ! | TCTAAAGCTGTGAATAAGGA+AGG | + | chr2.2:5261705-5261724 | None:intergenic | 35.0% |
| !! | GAAGGCTTTGAAGAAATACT+TGG | + | chr2.2:5260527-5260546 | None:intergenic | 35.0% |
| !! | GAAGTTGATGAAACAGTTGA+AGG | - | chr2.2:5261133-5261152 | MS.gene30961:CDS | 35.0% |
| !!! | CTTGAATTTTCGGGTTTCAT+GGG | - | chr2.2:5261633-5261652 | MS.gene30961:CDS | 35.0% |
| !!! | TCTTGAATTTTCGGGTTTCA+TGG | - | chr2.2:5261632-5261651 | MS.gene30961:CDS | 35.0% |
| AAAGAGTAAGAGCTTGAGTG+AGG | - | chr2.2:5260733-5260752 | MS.gene30961:CDS | 40.0% | |
| AAATTTGGCACTTTCCCAAG+GGG | - | chr2.2:5260369-5260388 | MS.gene30961:CDS | 40.0% | |
| AGATAGTTCCCTTTAGGCAT+TGG | + | chr2.2:5261891-5261910 | None:intergenic | 40.0% | |
| ATAAGGAAGGTTTCATTGGC+TGG | + | chr2.2:5261692-5261711 | None:intergenic | 40.0% | |
| ATGCCTAATCTTGAGTCCTT+AGG | - | chr2.2:5260977-5260996 | MS.gene30961:CDS | 40.0% | |
| CGTGATTTGACGAAAAGAAG+TGG | - | chr2.2:5261993-5262012 | MS.gene30961:CDS | 40.0% | |
| GAAATTTGGCACTTTCCCAA+GGG | - | chr2.2:5260368-5260387 | MS.gene30961:CDS | 40.0% | |
| GACTACTAATCTTAGCAAGG+AGG | - | chr2.2:5261207-5261226 | MS.gene30961:CDS | 40.0% | |
| GAGATGATGTTCTTCGCATT+AGG | + | chr2.2:5260799-5260818 | None:intergenic | 40.0% | |
| GATGAATCTTCAACAGGAAG+AGG | - | chr2.2:5262019-5262038 | MS.gene30961:CDS | 40.0% | |
| GGTCTAAGCAAACCGAAATT+TGG | - | chr2.2:5260354-5260373 | MS.gene30961:CDS | 40.0% | |
| TCCACAGCAGATAAAGAACT+AGG | + | chr2.2:5261178-5261197 | None:intergenic | 40.0% | |
| TCTTGGAATCGATAGTGTCA+TGG | - | chr2.2:5260487-5260506 | MS.gene30961:CDS | 40.0% | |
| TGGTTGGATGAATCTTCAAC+AGG | - | chr2.2:5262013-5262032 | MS.gene30961:CDS | 40.0% | |
| TTATGAAACGCCGAAGCTTT+CGG | - | chr2.2:5260457-5260476 | MS.gene30961:CDS | 40.0% | |
| ! | GTCAATTTCGCTTTGTTGTG+AGG | + | chr2.2:5260269-5260288 | None:intergenic | 40.0% |
| ! | TCCTAGTTCTTTATCTGCTG+TGG | - | chr2.2:5261174-5261193 | MS.gene30961:CDS | 40.0% |
| !! | ACATTAGCTCTAGTACCTTC+CGG | - | chr2.2:5260333-5260352 | MS.gene30961:CDS | 40.0% |
| !! | CTTGGGAAAGTGCCAAATTT+CGG | + | chr2.2:5260369-5260388 | None:intergenic | 40.0% |
| !! | TAGGCTAGCTTCATGTTTGT+TGG | + | chr2.2:5260780-5260799 | None:intergenic | 40.0% |
| AAAGTTGCTAGCTGGAACTC+AGG | - | chr2.2:5260394-5260413 | MS.gene30961:CDS | 45.0% | |
| AAGGAGTAAGCCACAAAGGA+TGG | - | chr2.2:5260549-5260568 | MS.gene30961:CDS | 45.0% | |
| AATACAATCGGCCAAGCAGA+AGG | - | chr2.2:5261262-5261281 | MS.gene30961:CDS | 45.0% | |
| AATTTGGCACTTTCCCAAGG+GGG | - | chr2.2:5260370-5260389 | MS.gene30961:CDS | 45.0% | |
| ACTCAGGCTCCAAAAAAGCT+TGG | - | chr2.2:5260410-5260429 | MS.gene30961:CDS | 45.0% | |
| CCACAAAGGATGGAATCAAG+TGG | - | chr2.2:5260559-5260578 | MS.gene30961:CDS | 45.0% | |
| CCACTTGATTCCATCCTTTG+TGG | + | chr2.2:5260562-5260581 | None:intergenic | 45.0% | |
| CGAAATTTGGCACTTTCCCA+AGG | - | chr2.2:5260367-5260386 | MS.gene30961:CDS | 45.0% | |
| CGCATATTCGATTCCTTTCC+TGG | + | chr2.2:5261498-5261517 | None:intergenic | 45.0% | |
| CTAAAGGTCAGGCTAGTAGT+GGG | - | chr2.2:5260066-5260085 | MS.gene30961:intron | 45.0% | |
| GATGAAACAGTTGAAGGGAG+TGG | - | chr2.2:5261139-5261158 | MS.gene30961:CDS | 45.0% | |
| GCACTTCATCGGAAGAAAGA+TGG | - | chr2.2:5260092-5260111 | MS.gene30961:intron | 45.0% | |
| GTCTACCGTGTATGGCATTT+GGG | + | chr2.2:5261670-5261689 | None:intergenic | 45.0% | |
| GTGTGTAGCACTTGAACTTG+AGG | - | chr2.2:5262043-5262062 | MS.gene30961:CDS | 45.0% | |
| TACAGATGCAGAATCCCTCA+AGG | - | chr2.2:5259902-5259921 | MS.gene30961:CDS | 45.0% | |
| TCATCGGAAGAAAGATGGCA+AGG | - | chr2.2:5260097-5260116 | MS.gene30961:intron | 45.0% | |
| TCTGAAGGAGTAAGCCACAA+AGG | - | chr2.2:5260545-5260564 | MS.gene30961:CDS | 45.0% | |
| TTGTGGCTTACTCCTTCAGA+AGG | + | chr2.2:5260545-5260564 | None:intergenic | 45.0% | |
| ! | ATCATCGTTGGGGTGTCAAA+AGG | - | chr2.2:5259518-5259537 | MS.gene30961:CDS | 45.0% |
| ! | GTAGTGGGAATGCACTTCAT+CGG | - | chr2.2:5260081-5260100 | MS.gene30961:intron | 45.0% |
| ! | TCATCGTTGGGGTGTCAAAA+GGG | - | chr2.2:5259519-5259538 | MS.gene30961:CDS | 45.0% |
| !! | AATATATAAATATAAATATC+AGG | - | chr2.2:5260016-5260035 | MS.gene30961:intron | 5.0% |
| AAGGGGGAAAAGTTGCTAGC+TGG | - | chr2.2:5260386-5260405 | MS.gene30961:CDS | 50.0% | |
| GCACGAGCAAAGAGATCAAG+TGG | - | chr2.2:5260861-5260880 | MS.gene30961:CDS | 50.0% | |
| GCAGACCCAAATGCCATACA+CGG | - | chr2.2:5261662-5261681 | MS.gene30961:intron | 50.0% | |
| GCTAAAGGTCAGGCTAGTAG+TGG | - | chr2.2:5260065-5260084 | MS.gene30961:intron | 50.0% | |
| GGTCTACCGTGTATGGCATT+TGG | + | chr2.2:5261671-5261690 | None:intergenic | 50.0% | |
| ! | AGCTAGCAACTTTTCCCCCT+TGG | + | chr2.2:5260387-5260406 | None:intergenic | 50.0% |
| ! | GCTAGCAACTTTTCCCCCTT+GGG | + | chr2.2:5260386-5260405 | None:intergenic | 50.0% |
| ! | GTTTTTCACCTTGGAAGGCG+CGG | + | chr2.2:5260315-5260334 | None:intergenic | 50.0% |
| ! | TTCGGTTTGCTTAGACCGGA+AGG | + | chr2.2:5260351-5260370 | None:intergenic | 50.0% |
| !! | ATTGGCTGGTCTACCGTGTA+TGG | + | chr2.2:5261678-5261697 | None:intergenic | 50.0% |
| AAGCTTTCGGCGAGCGATCT+TGG | - | chr2.2:5260470-5260489 | MS.gene30961:CDS | 55.0% | |
| AGATCGCTCGCCGAAAGCTT+CGG | + | chr2.2:5260470-5260489 | None:intergenic | 55.0% | |
| TCCTTTAACCGCGCCTTCCA+AGG | - | chr2.2:5260304-5260323 | MS.gene30961:CDS | 55.0% | |
| ! | ACCTTGGAAGGCGCGGTTAA+AGG | + | chr2.2:5260308-5260327 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.2 | gene | 5259424 | 5262109 | 5259424 | ID=MS.gene30961 |
| chr2.2 | mRNA | 5259424 | 5262109 | 5259424 | ID=MS.gene30961.t1;Parent=MS.gene30961 |
| chr2.2 | exon | 5261959 | 5262109 | 5261959 | ID=MS.gene30961.t1.exon1;Parent=MS.gene30961.t1 |
| chr2.2 | CDS | 5261959 | 5262109 | 5261959 | ID=cds.MS.gene30961.t1;Parent=MS.gene30961.t1 |
| chr2.2 | exon | 5261610 | 5261671 | 5261610 | ID=MS.gene30961.t1.exon2;Parent=MS.gene30961.t1 |
| chr2.2 | CDS | 5261610 | 5261671 | 5261610 | ID=cds.MS.gene30961.t1;Parent=MS.gene30961.t1 |
| chr2.2 | exon | 5260250 | 5261495 | 5260250 | ID=MS.gene30961.t1.exon3;Parent=MS.gene30961.t1 |
| chr2.2 | CDS | 5260250 | 5261495 | 5260250 | ID=cds.MS.gene30961.t1;Parent=MS.gene30961.t1 |
| chr2.2 | exon | 5259424 | 5260034 | 5259424 | ID=MS.gene30961.t1.exon4;Parent=MS.gene30961.t1 |
| chr2.2 | CDS | 5259424 | 5260034 | 5259424 | ID=cds.MS.gene30961.t1;Parent=MS.gene30961.t1 |
| Gene Sequence |
| Protein sequence |
