Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32341.t1 | KEH40424.1 | 63 | 581 | 174 | 4 | 1 | 540 | 1 | 581 | 1.80E-145 | 526.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32341.t1 | A0A072VEK3 | 63.0 | 581 | 174 | 4 | 1 | 540 | 1 | 581 | 1.3e-145 | 526.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene32341 | 0.832384 | 9.75E-56 | -1.69E-46 |
| MS.gene049254 | MS.gene32341 | 0.83153 | 1.58E-55 | -1.69E-46 |
| MS.gene049350 | MS.gene32341 | 0.810464 | 1.14E-50 | -1.69E-46 |
| MS.gene049435 | MS.gene32341 | 0.809344 | 1.98E-50 | -1.69E-46 |
| MS.gene049850 | MS.gene32341 | 0.816019 | 6.86E-52 | -1.69E-46 |
| MS.gene051247 | MS.gene32341 | 0.816167 | 6.36E-52 | -1.69E-46 |
| MS.gene051700 | MS.gene32341 | 0.802649 | 5.08E-49 | -1.69E-46 |
| MS.gene051744 | MS.gene32341 | 0.805437 | 1.34E-49 | -1.69E-46 |
| MS.gene052584 | MS.gene32341 | 0.80245 | 5.58E-49 | -1.69E-46 |
| MS.gene052773 | MS.gene32341 | 0.800235 | 1.58E-48 | -1.69E-46 |
| MS.gene053079 | MS.gene32341 | 0.827358 | 1.64E-54 | -1.69E-46 |
| MS.gene053226 | MS.gene32341 | 0.834286 | 3.27E-56 | -1.69E-46 |
| MS.gene054139 | MS.gene32341 | 0.921769 | 2.34E-88 | -1.69E-46 |
| MS.gene054775 | MS.gene32341 | 0.807869 | 4.10E-50 | -1.69E-46 |
| MS.gene054991 | MS.gene32341 | 0.80298 | 4.34E-49 | -1.69E-46 |
| MS.gene055513 | MS.gene32341 | 0.831742 | 1.40E-55 | -1.69E-46 |
| MS.gene055926 | MS.gene32341 | 0.82537 | 4.87E-54 | -1.69E-46 |
| MS.gene056005 | MS.gene32341 | 0.802357 | 5.83E-49 | -1.69E-46 |
| MS.gene056045 | MS.gene32341 | 0.802254 | 6.12E-49 | -1.69E-46 |
| MS.gene056050 | MS.gene32341 | 0.804347 | 2.26E-49 | -1.69E-46 |
| MS.gene056162 | MS.gene32341 | 0.801402 | 9.16E-49 | -1.69E-46 |
| MS.gene056174 | MS.gene32341 | 0.805793 | 1.12E-49 | -1.69E-46 |
| MS.gene056308 | MS.gene32341 | 0.830132 | 3.49E-55 | -1.69E-46 |
| MS.gene056595 | MS.gene32341 | 0.809754 | 1.62E-50 | -1.69E-46 |
| MS.gene056776 | MS.gene32341 | 0.816682 | 4.88E-52 | -1.69E-46 |
| MS.gene057208 | MS.gene32341 | 0.809877 | 1.52E-50 | -1.69E-46 |
| MS.gene057915 | MS.gene32341 | 0.804255 | 2.36E-49 | -1.69E-46 |
| MS.gene05847 | MS.gene32341 | 0.817553 | 3.11E-52 | -1.69E-46 |
| MS.gene058852 | MS.gene32341 | 0.808176 | 3.52E-50 | -1.69E-46 |
| MS.gene059439 | MS.gene32341 | 0.825933 | 3.58E-54 | -1.69E-46 |
| MS.gene059570 | MS.gene32341 | 0.825781 | 3.89E-54 | -1.69E-46 |
| MS.gene059725 | MS.gene32341 | 0.826431 | 2.72E-54 | -1.69E-46 |
| MS.gene060365 | MS.gene32341 | 0.804849 | 1.77E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32341.t1 | MTR_1g028620 | 78.657 | 581 | 83 | 5 | 1 | 540 | 1 | 581 | 0.0 | 854 |
| MS.gene32341.t1 | MTR_1g028880 | 57.667 | 600 | 169 | 14 | 1 | 541 | 1 | 574 | 0.0 | 521 |
| MS.gene32341.t1 | MTR_1g028850 | 56.364 | 110 | 42 | 2 | 414 | 522 | 170 | 274 | 3.68e-31 | 122 |
| MS.gene32341.t1 | MTR_1g028850 | 44.094 | 127 | 55 | 3 | 1 | 121 | 1 | 117 | 2.60e-17 | 82.8 |
| MS.gene32341.t1 | MTR_1g028700 | 44.335 | 203 | 48 | 5 | 103 | 299 | 13 | 156 | 1.76e-28 | 112 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32341.t1 | AT5G53220 | 43.096 | 239 | 107 | 5 | 303 | 540 | 152 | 362 | 1.39e-39 | 148 |
| MS.gene32341.t1 | AT5G53220 | 43.096 | 239 | 107 | 5 | 303 | 540 | 152 | 362 | 1.39e-39 | 148 |
| MS.gene32341.t1 | AT5G53220 | 43.096 | 239 | 107 | 5 | 303 | 540 | 152 | 362 | 1.39e-39 | 148 |
| MS.gene32341.t1 | AT5G53220 | 43.096 | 239 | 107 | 5 | 303 | 540 | 152 | 362 | 1.39e-39 | 148 |
| MS.gene32341.t1 | AT5G53220 | 43.096 | 239 | 107 | 5 | 303 | 540 | 152 | 362 | 1.39e-39 | 148 |
| MS.gene32341.t1 | AT5G53220 | 43.096 | 239 | 107 | 5 | 303 | 540 | 152 | 362 | 1.39e-39 | 148 |
| MS.gene32341.t1 | AT5G53220 | 43.096 | 239 | 107 | 5 | 303 | 540 | 152 | 362 | 1.39e-39 | 148 |
Find 92 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGTTCTTTCCTTCTTCTT+TGG | 0.167172 | 1.4:+14016725 | None:intergenic |
| CCAAAACAATGAAGAAAATT+TGG | 0.207616 | 1.4:-14016688 | MS.gene32341:CDS |
| TTCCTTATAAGTTTACTAAT+TGG | 0.230321 | 1.4:+14016012 | None:intergenic |
| AGTAAGGAAAATTCTGATTT+AGG | 0.238486 | 1.4:-14016129 | MS.gene32341:CDS |
| ACTGACATGCGTGCAGTATT+TGG | 0.275393 | 1.4:-14015496 | MS.gene32341:CDS |
| CTGCAAATTTCAACTCCTTC+GGG | 0.292903 | 1.4:+14014117 | None:intergenic |
| TGCCAATTAGTAAACTTATA+AGG | 0.299713 | 1.4:-14016014 | MS.gene32341:CDS |
| TCATATTCCCACTTAATTTC+CGG | 0.304941 | 1.4:+14015520 | None:intergenic |
| TGTGGTAGTCAAGGGAAATT+TGG | 0.329725 | 1.4:+14014036 | None:intergenic |
| ATTGCAAGGCCGTTTCCTTT+TGG | 0.341522 | 1.4:+14016632 | None:intergenic |
| ATCTTGCGAGCTACTTGAAT+TGG | 0.341748 | 1.4:+14016281 | None:intergenic |
| TTTCTCAGAGGCTGTACTTT+GGG | 0.347215 | 1.4:-14014210 | MS.gene32341:intron |
| CAGGATGATAAAACGTCTTC+AGG | 0.357356 | 1.4:-14016474 | MS.gene32341:CDS |
| TCTGCAAATTTCAACTCCTT+CGG | 0.360255 | 1.4:+14014116 | None:intergenic |
| GGACAAGTCTAATAGTGATT+TGG | 0.391336 | 1.4:-14016307 | MS.gene32341:CDS |
| AATGAAGAAAATTTGGACTT+TGG | 0.391567 | 1.4:-14016681 | MS.gene32341:CDS |
| CTCACAAAATTTCACTAGAT+AGG | 0.393139 | 1.4:-14016785 | MS.gene32341:CDS |
| TCTAAAATTCAGAGGAAGAA+AGG | 0.406307 | 1.4:-14015544 | MS.gene32341:CDS |
| GTCAGGTTATAAAGAAGAAA+AGG | 0.421340 | 1.4:-14015900 | MS.gene32341:intron |
| CTTTATCGACAGCAAATGCT+TGG | 0.431929 | 1.4:-14015436 | MS.gene32341:CDS |
| TTTATCGACAGCAAATGCTT+GGG | 0.435305 | 1.4:-14015435 | MS.gene32341:CDS |
| ATCCGATACGTCCTGTGAAT+CGG | 0.442377 | 1.4:+14015594 | None:intergenic |
| CTCAGAGGCTGTACTTTGGG+AGG | 0.449009 | 1.4:-14014207 | MS.gene32341:intron |
| TTATGATACTTGATCTTATG+AGG | 0.452680 | 1.4:+14016447 | None:intergenic |
| AGAAAGGGCCGGAAATTAAG+TGG | 0.454905 | 1.4:-14015528 | MS.gene32341:CDS |
| AACATGTACGGTAGCAGAAA+GGG | 0.457775 | 1.4:-14016184 | MS.gene32341:CDS |
| TCATGAGCATCATCATTTGT+TGG | 0.473135 | 1.4:+14015799 | None:intergenic |
| ATTTCTCAGAGGCTGTACTT+TGG | 0.475823 | 1.4:-14014211 | MS.gene32341:intron |
| AGGAAACATTTGGCCGTGAC+GGG | 0.476824 | 1.4:-14015399 | MS.gene32341:CDS |
| ACATTTGGCCGTGACGGGCG+TGG | 0.479632 | 1.4:-14015394 | MS.gene32341:CDS |
| TCGGAATCCTTGTTACGATC+TGG | 0.485059 | 1.4:+14015613 | None:intergenic |
| ATGTGCAAGATGTATCTGAT+AGG | 0.485167 | 1.4:-14016233 | MS.gene32341:CDS |
| AAAGAAAACTGTGGAGGAGT+TGG | 0.490542 | 1.4:-14014151 | MS.gene32341:CDS |
| TCAGAGGCTGTACTTTGGGA+GGG | 0.491157 | 1.4:-14014206 | MS.gene32341:intron |
| CTAAAATTCAGAGGAAGAAA+GGG | 0.491197 | 1.4:-14015543 | MS.gene32341:CDS |
| CAATTATGCTCAAAAGAGTA+AGG | 0.504524 | 1.4:-14016145 | MS.gene32341:CDS |
| CAGATGTATGAGGAAACATT+TGG | 0.507685 | 1.4:-14015409 | MS.gene32341:CDS |
| CAACATGTACGGTAGCAGAA+AGG | 0.513020 | 1.4:-14016185 | MS.gene32341:CDS |
| CATGTGCTGTAATTCCGAAA+AGG | 0.513552 | 1.4:-14016095 | MS.gene32341:CDS |
| TATTTGCTGCAAATACCAAA+AGG | 0.524727 | 1.4:-14016647 | MS.gene32341:CDS |
| TTCCGATTCACAGGACGTAT+CGG | 0.524952 | 1.4:-14015596 | MS.gene32341:CDS |
| TGCTAAATCCACGCCCGTCA+CGG | 0.529350 | 1.4:+14015386 | None:intergenic |
| AAGAACTTGGACAACAATCA+TGG | 0.534690 | 1.4:-14016711 | MS.gene32341:CDS |
| CAAAGAAGAAGGAAAGAACT+TGG | 0.535289 | 1.4:-14016724 | MS.gene32341:CDS |
| GCTTGGGGAACAGATGTATG+AGG | 0.550064 | 1.4:-14015419 | MS.gene32341:CDS |
| GAGGAAACATTTGGCCGTGA+CGG | 0.554171 | 1.4:-14015400 | MS.gene32341:CDS |
| GTATCTGATAGGCAAGGTAG+TGG | 0.560203 | 1.4:-14016222 | MS.gene32341:CDS |
| ACTTATAAGGAAGGATGTTG+AGG | 0.567746 | 1.4:-14016001 | MS.gene32341:CDS |
| CTGCAAATACCAAAAGGAAA+CGG | 0.569805 | 1.4:-14016641 | MS.gene32341:CDS |
| AATTAGTAAACTTATAAGGA+AGG | 0.570273 | 1.4:-14016010 | MS.gene32341:CDS |
| TAACAAGGATTCCGATTCAC+AGG | 0.571412 | 1.4:-14015605 | MS.gene32341:CDS |
| TTAGCAAGTATGATGCTGCC+AGG | 0.578186 | 1.4:-14015369 | MS.gene32341:intron |
| GGATGCAGTGTTATGTATGA+AGG | 0.583376 | 1.4:-14015470 | MS.gene32341:CDS |
| CGAGTCTGTAGACGACGCCT+TGG | 0.585284 | 1.4:+14016519 | None:intergenic |
| ACTGATGACAGTCCTTATGA+TGG | 0.585553 | 1.4:-14014177 | MS.gene32341:CDS |
| TCACTAGATAGGCAAGGTGG+TGG | 0.589093 | 1.4:-14016774 | MS.gene32341:CDS |
| AAGTTGACATTCAAATGCCA+AGG | 0.590040 | 1.4:-14016536 | MS.gene32341:CDS |
| TTATCGACAGCAAATGCTTG+GGG | 0.592426 | 1.4:-14015434 | MS.gene32341:CDS |
| AATTCAGAGGAAGAAAGGGC+CGG | 0.592702 | 1.4:-14015539 | MS.gene32341:CDS |
| TCGCTCATAACGACATTGCA+AGG | 0.594315 | 1.4:+14016618 | None:intergenic |
| GATTTGTCATACAGTGAGGA+AGG | 0.597633 | 1.4:-14016390 | MS.gene32341:CDS |
| ATTGACAGCGACGATGAACC+TGG | 0.599681 | 1.4:-14016813 | MS.gene32341:CDS |
| GATTCACAGGACGTATCGGA+TGG | 0.603223 | 1.4:-14015592 | MS.gene32341:CDS |
| GAAAGTGATCATGATGATGA+TGG | 0.603517 | 1.4:-14016591 | MS.gene32341:CDS |
| AGACAGATGTAACGGTGATG+TGG | 0.606022 | 1.4:-14015668 | MS.gene32341:CDS |
| AGAAGAAAAGGAAAGCGAGT+AGG | 0.610603 | 1.4:-14015888 | MS.gene32341:CDS |
| AAATGATGATGACTTAGGAG+TGG | 0.618994 | 1.4:-14016412 | MS.gene32341:CDS |
| GGCGTCGTCTACAGACTCGA+AGG | 0.625375 | 1.4:-14016515 | MS.gene32341:CDS |
| TGATGAGGATGAATTAGAAG+AGG | 0.628354 | 1.4:-14015776 | MS.gene32341:CDS |
| TACGGTAGCAGAAAGGGGAA+AGG | 0.629039 | 1.4:-14016178 | MS.gene32341:CDS |
| ACATGTACGGTAGCAGAAAG+GGG | 0.633219 | 1.4:-14016183 | MS.gene32341:CDS |
| AGACGTGTCTGATAAGTCAC+AGG | 0.633880 | 1.4:-14016328 | MS.gene32341:CDS |
| GAGGACATATCAAACAGTGA+GGG | 0.634781 | 1.4:-14015757 | MS.gene32341:CDS |
| AGATATTATCTAAAATTCAG+AGG | 0.636003 | 1.4:-14015552 | MS.gene32341:CDS |
| AAAATTTCACTAGATAGGCA+AGG | 0.637987 | 1.4:-14016780 | MS.gene32341:CDS |
| AGATTTACCAGATCGTAACA+AGG | 0.639196 | 1.4:-14015620 | MS.gene32341:CDS |
| TGATGATGCTCATGATGATG+AGG | 0.643410 | 1.4:-14015791 | MS.gene32341:CDS |
| AAGTCACAAGACAGATGTAA+CGG | 0.646024 | 1.4:-14015676 | MS.gene32341:CDS |
| TTGGAAGAATATAATCCCGA+AGG | 0.647955 | 1.4:-14014132 | MS.gene32341:CDS |
| CAAGATGTATCTGATAGGCA+AGG | 0.654782 | 1.4:-14016228 | MS.gene32341:CDS |
| AGTGAGGGAGAAAACTTGAG+TGG | 0.655865 | 1.4:-14015742 | MS.gene32341:CDS |
| GAAAGGGCCGGAAATTAAGT+GGG | 0.658462 | 1.4:-14015527 | MS.gene32341:CDS |
| GCAGCATCTACTACACCCAC+CGG | 0.660066 | 1.4:-14016870 | MS.gene32341:CDS |
| TGATGGTCTAAAGAAAACTG+TGG | 0.662748 | 1.4:-14014160 | MS.gene32341:CDS |
| TGGTCTAAAGAAAACTGTGG+AGG | 0.668082 | 1.4:-14014157 | MS.gene32341:CDS |
| AGAGGACATATCAAACAGTG+AGG | 0.674008 | 1.4:-14015758 | MS.gene32341:CDS |
| CATGCGTGCAGTATTTGGAA+AGG | 0.681411 | 1.4:-14015491 | MS.gene32341:CDS |
| AGTGGATTTGTCATACAGTG+AGG | 0.704776 | 1.4:-14016394 | MS.gene32341:CDS |
| ATTTCACTAGATAGGCAAGG+TGG | 0.720597 | 1.4:-14016777 | MS.gene32341:CDS |
| CATAAGGACTGTCATCAGTG+AGG | 0.734650 | 1.4:+14014181 | None:intergenic |
| TGAATCTGAAAATGACGACG+AGG | 0.739287 | 1.4:-14016046 | MS.gene32341:CDS |
| AGATTTACAAGATAACAACA+AGG | 0.742840 | 1.4:-14016262 | MS.gene32341:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACTTTTTATGTAACTTTTTT+TGG | - | chr1.4:14016599-14016618 | MS.gene32341:CDS | 15.0% |
| !!! | ATTATTAACAATTTTCTATC+AGG | - | chr1.4:14016655-14016674 | MS.gene32341:CDS | 15.0% |
| !!! | GTTTTTATTTTACTTTTTTG+TGG | - | chr1.4:14016129-14016148 | MS.gene32341:CDS | 15.0% |
| !! | AATTAGTAAACTTATAAGGA+AGG | - | chr1.4:14014907-14014926 | MS.gene32341:intron | 20.0% |
| !! | ATAAAAAGTTAAATTCAGCA+AGG | + | chr1.4:14016588-14016607 | None:intergenic | 20.0% |
| !! | TTCCTTATAAGTTTACTAAT+TGG | + | chr1.4:14014908-14014927 | None:intergenic | 20.0% |
| !! | TTGTAATTCCATGTTATTAA+AGG | - | chr1.4:14015988-14016007 | MS.gene32341:intron | 20.0% |
| !!! | AGATATTATCTAAAATTCAG+AGG | - | chr1.4:14015365-14015384 | MS.gene32341:intron | 20.0% |
| !!! | ATTTTTCCTTTTACATTACT+TGG | - | chr1.4:14015879-14015898 | MS.gene32341:CDS | 20.0% |
| !!! | GATGTTAAATTTTTGATGTA+AGG | - | chr1.4:14016210-14016229 | MS.gene32341:CDS | 20.0% |
| !!! | TTTTATGTAACTTTTTTTGG+AGG | - | chr1.4:14016602-14016621 | MS.gene32341:CDS | 20.0% |
| ! | AATGAAGAAAATTTGGACTT+TGG | - | chr1.4:14014236-14014255 | MS.gene32341:intron | 25.0% |
| ! | AGATTTACAAGATAACAACA+AGG | - | chr1.4:14014655-14014674 | MS.gene32341:intron | 25.0% |
| ! | AGTAAGGAAAATTCTGATTT+AGG | - | chr1.4:14014788-14014807 | MS.gene32341:intron | 25.0% |
| ! | CAAAAATTTAACATCACAGT+TGG | + | chr1.4:14016205-14016224 | None:intergenic | 25.0% |
| ! | CCAAAACAATGAAGAAAATT+TGG | - | chr1.4:14014229-14014248 | MS.gene32341:intron | 25.0% |
| ! | GCAAGATTCTTATGTAATAA+AGG | + | chr1.4:14015612-14015631 | None:intergenic | 25.0% |
| ! | TCCATGTTATTAAAGGAATA+GGG | - | chr1.4:14015995-14016014 | MS.gene32341:intron | 25.0% |
| ! | TGCCAATTAGTAAACTTATA+AGG | - | chr1.4:14014903-14014922 | MS.gene32341:intron | 25.0% |
| ! | TGTGAATTTGAACTATCATA+AGG | - | chr1.4:14016088-14016107 | MS.gene32341:CDS | 25.0% |
| ! | TTATGATACTTGATCTTATG+AGG | + | chr1.4:14014473-14014492 | None:intergenic | 25.0% |
| ! | TTCCATGTTATTAAAGGAAT+AGG | - | chr1.4:14015994-14016013 | MS.gene32341:intron | 25.0% |
| ! | TTCTTTATAACCTGACTAAT+CGG | + | chr1.4:14015013-14015032 | None:intergenic | 25.0% |
| ! | TTGAAATTACAATTTCTCAG+AGG | - | chr1.4:14016695-14016714 | MS.gene32341:CDS | 25.0% |
| !! | CCAAATTTTCTTCATTGTTT+TGG | + | chr1.4:14014232-14014251 | None:intergenic | 25.0% |
| !! | TCAAAAAATGATGATGACTT+AGG | - | chr1.4:14014500-14014519 | MS.gene32341:intron | 25.0% |
| !!! | ATCAGGTTTCTAACATTTTT+TGG | - | chr1.4:14016672-14016691 | MS.gene32341:CDS | 25.0% |
| !!! | CTTTAAAATCCTTTATGTTG+TGG | - | chr1.4:14016464-14016483 | MS.gene32341:CDS | 25.0% |
| AAAATTTCACTAGATAGGCA+AGG | - | chr1.4:14014137-14014156 | MS.gene32341:CDS | 30.0% | |
| ACATGACCAAGTAATGTAAA+AGG | + | chr1.4:14015888-14015907 | None:intergenic | 30.0% | |
| CAATTATGCTCAAAAGAGTA+AGG | - | chr1.4:14014772-14014791 | MS.gene32341:intron | 30.0% | |
| CGTAGGTGATGTAAAATATT+AGG | + | chr1.4:14016264-14016283 | None:intergenic | 30.0% | |
| CTAAAATTCAGAGGAAGAAA+GGG | - | chr1.4:14015374-14015393 | MS.gene32341:CDS | 30.0% | |
| CTCACAAAATTTCACTAGAT+AGG | - | chr1.4:14014132-14014151 | MS.gene32341:CDS | 30.0% | |
| CTTTATATTGCGGAAAAATG+TGG | - | chr1.4:14016411-14016430 | MS.gene32341:CDS | 30.0% | |
| GTCAGGTTATAAAGAAGAAA+AGG | - | chr1.4:14015017-14015036 | MS.gene32341:intron | 30.0% | |
| TCATATTCCCACTTAATTTC+CGG | + | chr1.4:14015400-14015419 | None:intergenic | 30.0% | |
| TCCCTATTCCTTTAATAACA+TGG | + | chr1.4:14015999-14016018 | None:intergenic | 30.0% | |
| TGTTGCAAACCTTTATATTG+CGG | - | chr1.4:14016401-14016420 | MS.gene32341:CDS | 30.0% | |
| ! | AAGGAAACTTTTGTCTCTAT+AGG | - | chr1.4:14016107-14016126 | MS.gene32341:CDS | 30.0% |
| ! | ATTCTGATTTTCAGTTACAC+AGG | + | chr1.4:14016635-14016654 | None:intergenic | 30.0% |
| ! | ATTTTCTCTGTCAACATGTA+CGG | - | chr1.4:14014721-14014740 | MS.gene32341:intron | 30.0% |
| ! | CACATTTTTCCGCAATATAA+AGG | + | chr1.4:14016413-14016432 | None:intergenic | 30.0% |
| ! | CTTACTCTTTTGAGCATAAT+TGG | + | chr1.4:14014774-14014793 | None:intergenic | 30.0% |
| ! | GAAATTTTGTGAGAAATACC+AGG | + | chr1.4:14014125-14014144 | None:intergenic | 30.0% |
| ! | GTCTTTTGCTTACACATTTT+CGG | + | chr1.4:14015072-14015091 | None:intergenic | 30.0% |
| ! | GTTTTCTTTAGACCATCATA+AGG | + | chr1.4:14016755-14016774 | None:intergenic | 30.0% |
| ! | TATTTGCTGCAAATACCAAA+AGG | - | chr1.4:14014270-14014289 | MS.gene32341:intron | 30.0% |
| ! | TCTAAAATTCAGAGGAAGAA+AGG | - | chr1.4:14015373-14015392 | MS.gene32341:CDS | 30.0% |
| ! | TTTTACATTACTTGGTCATG+TGG | - | chr1.4:14015887-14015906 | MS.gene32341:CDS | 30.0% |
| !! | TGAGATTTTCAAGAACAAAG+AGG | - | chr1.4:14016856-14016875 | MS.gene32341:CDS | 30.0% |
| !! | TGCATGCTTTTTGTATATGT+CGG | - | chr1.4:14016345-14016364 | MS.gene32341:CDS | 30.0% |
| !! | TTACGAGTTTGTTTCCTTTT+CGG | + | chr1.4:14014839-14014858 | None:intergenic | 30.0% |
| AAATTGCGACCACAACATAA+AGG | + | chr1.4:14016476-14016495 | None:intergenic | 35.0% | |
| AAGAACTTGGACAACAATCA+TGG | - | chr1.4:14014206-14014225 | MS.gene32341:intron | 35.0% | |
| AAGTCACAAGACAGATGTAA+CGG | - | chr1.4:14015241-14015260 | MS.gene32341:intron | 35.0% | |
| AAGTTGACATTCAAATGCCA+AGG | - | chr1.4:14014381-14014400 | MS.gene32341:intron | 35.0% | |
| AATAGGGAAAATATCAGAGG+AGG | - | chr1.4:14016011-14016030 | MS.gene32341:CDS | 35.0% | |
| ACTTATAAGGAAGGATGTTG+AGG | - | chr1.4:14014916-14014935 | MS.gene32341:intron | 35.0% | |
| AGATTTACCAGATCGTAACA+AGG | - | chr1.4:14015297-14015316 | MS.gene32341:intron | 35.0% | |
| AGGAATAGGGAAAATATCAG+AGG | - | chr1.4:14016008-14016027 | MS.gene32341:CDS | 35.0% | |
| ATGTGCAAGATGTATCTGAT+AGG | - | chr1.4:14014684-14014703 | MS.gene32341:intron | 35.0% | |
| CAAAGAAGAAGGAAAGAACT+TGG | - | chr1.4:14014193-14014212 | MS.gene32341:CDS | 35.0% | |
| CAAGTTCTTTCCTTCTTCTT+TGG | + | chr1.4:14014195-14014214 | None:intergenic | 35.0% | |
| CAGATGTATGAGGAAACATT+TGG | - | chr1.4:14015508-14015527 | MS.gene32341:CDS | 35.0% | |
| CTGCAAATACCAAAAGGAAA+CGG | - | chr1.4:14014276-14014295 | MS.gene32341:intron | 35.0% | |
| GAAACTCGTAAGCAAAAATC+AGG | - | chr1.4:14014424-14014443 | MS.gene32341:intron | 35.0% | |
| GAAAGCTACCATTTGATAGA+AGG | + | chr1.4:14015656-14015675 | None:intergenic | 35.0% | |
| GGACAAGTCTAATAGTGATT+TGG | - | chr1.4:14014610-14014629 | MS.gene32341:intron | 35.0% | |
| TCATGAGCATCATCATTTGT+TGG | + | chr1.4:14015121-14015140 | None:intergenic | 35.0% | |
| TCTGCAAATTTCAACTCCTT+CGG | + | chr1.4:14016804-14016823 | None:intergenic | 35.0% | |
| TGATGAGGATGAATTAGAAG+AGG | - | chr1.4:14015141-14015160 | MS.gene32341:intron | 35.0% | |
| TGATGGTCTAAAGAAAACTG+TGG | - | chr1.4:14016757-14016776 | MS.gene32341:CDS | 35.0% | |
| TTGGAAGAATATAATCCCGA+AGG | - | chr1.4:14016785-14016804 | MS.gene32341:CDS | 35.0% | |
| TTTATCGACAGCAAATGCTT+GGG | - | chr1.4:14015482-14015501 | MS.gene32341:CDS | 35.0% | |
| ! | AAATGATGATGACTTAGGAG+TGG | - | chr1.4:14014505-14014524 | MS.gene32341:intron | 35.0% |
| ! | ACATGTTTTGCCAAAGAAGA+AGG | - | chr1.4:14014182-14014201 | MS.gene32341:CDS | 35.0% |
| ! | GAAAGTGATCATGATGATGA+TGG | - | chr1.4:14014326-14014345 | MS.gene32341:intron | 35.0% |
| ! | GAATCTTGCACTTTGTGTTT+TGG | - | chr1.4:14015623-14015642 | MS.gene32341:CDS | 35.0% |
| ! | TACAGAACTAGATTTTGCAC+CGG | + | chr1.4:14014069-14014088 | None:intergenic | 35.0% |
| ! | TTATGTTGTGGTCGCAATTT+TGG | - | chr1.4:14016476-14016495 | MS.gene32341:CDS | 35.0% |
| ! | TTTTGTGCAAAAGCTTGAAC+TGG | + | chr1.4:14015954-14015973 | None:intergenic | 35.0% |
| !! | ATGCTTTTTGTATATGTCGG+TGG | - | chr1.4:14016348-14016367 | MS.gene32341:CDS | 35.0% |
| !!! | AAGTCTATTTTGACTGCATG+AGG | - | chr1.4:14016041-14016060 | MS.gene32341:CDS | 35.0% |
| !!! | TTGCACTTTGTGTTTTGGTT+TGG | - | chr1.4:14015628-14015647 | MS.gene32341:CDS | 35.0% |
| AAAGAAAACTGTGGAGGAGT+TGG | - | chr1.4:14016766-14016785 | MS.gene32341:CDS | 40.0% | |
| AACATGTACGGTAGCAGAAA+GGG | - | chr1.4:14014733-14014752 | MS.gene32341:intron | 40.0% | |
| ACGGCTTCTCAGTATATACA+TGG | - | chr1.4:14016551-14016570 | MS.gene32341:CDS | 40.0% | |
| ACTGATGACAGTCCTTATGA+TGG | - | chr1.4:14016740-14016759 | MS.gene32341:CDS | 40.0% | |
| AGAAGAAAAGGAAAGCGAGT+AGG | - | chr1.4:14015029-14015048 | MS.gene32341:intron | 40.0% | |
| AGAGGACATATCAAACAGTG+AGG | - | chr1.4:14015159-14015178 | MS.gene32341:intron | 40.0% | |
| AGTATTGCTAGATGTCACGA+AGG | - | chr1.4:14015699-14015718 | MS.gene32341:CDS | 40.0% | |
| ATCTTGCGAGCTACTTGAAT+TGG | + | chr1.4:14014639-14014658 | None:intergenic | 40.0% | |
| ATTTCACTAGATAGGCAAGG+TGG | - | chr1.4:14014140-14014159 | MS.gene32341:CDS | 40.0% | |
| ATTTCTCAGAGGCTGTACTT+TGG | - | chr1.4:14016706-14016725 | MS.gene32341:CDS | 40.0% | |
| CAAGATGTATCTGATAGGCA+AGG | - | chr1.4:14014689-14014708 | MS.gene32341:intron | 40.0% | |
| CAGGATGATAAAACGTCTTC+AGG | - | chr1.4:14014443-14014462 | MS.gene32341:intron | 40.0% | |
| CATGTGCTGTAATTCCGAAA+AGG | - | chr1.4:14014822-14014841 | MS.gene32341:intron | 40.0% | |
| CTGCAAATTTCAACTCCTTC+GGG | + | chr1.4:14016803-14016822 | None:intergenic | 40.0% | |
| CTTTATCGACAGCAAATGCT+TGG | - | chr1.4:14015481-14015500 | MS.gene32341:CDS | 40.0% | |
| GAGGACATATCAAACAGTGA+GGG | - | chr1.4:14015160-14015179 | MS.gene32341:intron | 40.0% | |
| GATTTGTCATACAGTGAGGA+AGG | - | chr1.4:14014527-14014546 | MS.gene32341:intron | 40.0% | |
| GGATGCAGTGTTATGTATGA+AGG | - | chr1.4:14015447-14015466 | MS.gene32341:CDS | 40.0% | |
| GGTCGATACAGTTGAAATTG+TGG | - | chr1.4:14016432-14016451 | MS.gene32341:CDS | 40.0% | |
| TAACAAGGATTCCGATTCAC+AGG | - | chr1.4:14015312-14015331 | MS.gene32341:intron | 40.0% | |
| TACATCACCTACGCATGTTT+GGG | - | chr1.4:14016271-14016290 | MS.gene32341:CDS | 40.0% | |
| TCCTGTTTGATGGAAAACAC+TGG | - | chr1.4:14015784-14015803 | MS.gene32341:CDS | 40.0% | |
| TGAATCTGAAAATGACGACG+AGG | - | chr1.4:14014871-14014890 | MS.gene32341:intron | 40.0% | |
| TGGAAAACACTGGAGGATAA+AGG | - | chr1.4:14015794-14015813 | MS.gene32341:CDS | 40.0% | |
| TGGTCTAAAGAAAACTGTGG+AGG | - | chr1.4:14016760-14016779 | MS.gene32341:CDS | 40.0% | |
| TGTTTGATGGAAAACACTGG+AGG | - | chr1.4:14015787-14015806 | MS.gene32341:CDS | 40.0% | |
| TTACATCACCTACGCATGTT+TGG | - | chr1.4:14016270-14016289 | MS.gene32341:CDS | 40.0% | |
| TTATCGACAGCAAATGCTTG+GGG | - | chr1.4:14015483-14015502 | MS.gene32341:CDS | 40.0% | |
| TTGTATCTTCTCTACCTACC+TGG | + | chr1.4:14015569-14015588 | None:intergenic | 40.0% | |
| TTTCTCAGAGGCTGTACTTT+GGG | - | chr1.4:14016707-14016726 | MS.gene32341:CDS | 40.0% | |
| ! | AGTGGATTTGTCATACAGTG+AGG | - | chr1.4:14014523-14014542 | MS.gene32341:intron | 40.0% |
| ! | CACCTCTTTCTGCTGTTTAA+CGG | - | chr1.4:14016524-14016543 | MS.gene32341:CDS | 40.0% |
| ! | GTTTGGAGCCTTCTATCAAA+TGG | - | chr1.4:14015645-14015664 | MS.gene32341:CDS | 40.0% |
| ! | TCCAGTGTTTTCCATCAAAC+AGG | + | chr1.4:14015788-14015807 | None:intergenic | 40.0% |
| ! | TCTGCTGTTTAACGGTGTTA+CGG | - | chr1.4:14016532-14016551 | MS.gene32341:CDS | 40.0% |
| ! | TGATGATATGCCGATTAGTC+AGG | - | chr1.4:14015000-14015019 | MS.gene32341:intron | 40.0% |
| ! | TGATGATGCTCATGATGATG+AGG | - | chr1.4:14015126-14015145 | MS.gene32341:intron | 40.0% |
| !! | ATTTTCGGAGACGCTTTAGA+TGG | + | chr1.4:14015057-14015076 | None:intergenic | 40.0% |
| AATTCAGAGGAAGAAAGGGC+CGG | - | chr1.4:14015378-14015397 | MS.gene32341:CDS | 45.0% | |
| ACATGTACGGTAGCAGAAAG+GGG | - | chr1.4:14014734-14014753 | MS.gene32341:intron | 45.0% | |
| ACCTTCAACGTCCTGTTTGA+TGG | - | chr1.4:14015774-14015793 | MS.gene32341:CDS | 45.0% | |
| ACTGACATGCGTGCAGTATT+TGG | - | chr1.4:14015421-14015440 | MS.gene32341:CDS | 45.0% | |
| AGAAAGGGCCGGAAATTAAG+TGG | - | chr1.4:14015389-14015408 | MS.gene32341:CDS | 45.0% | |
| AGACAGATGTAACGGTGATG+TGG | - | chr1.4:14015249-14015268 | MS.gene32341:intron | 45.0% | |
| AGACGTGTCTGATAAGTCAC+AGG | - | chr1.4:14014589-14014608 | MS.gene32341:intron | 45.0% | |
| AGTGAGGGAGAAAACTTGAG+TGG | - | chr1.4:14015175-14015194 | MS.gene32341:intron | 45.0% | |
| ATCCGATACGTCCTGTGAAT+CGG | + | chr1.4:14015326-14015345 | None:intergenic | 45.0% | |
| CAACATGTACGGTAGCAGAA+AGG | - | chr1.4:14014732-14014751 | MS.gene32341:intron | 45.0% | |
| CACCGTTAAACAGCAGAAAG+AGG | + | chr1.4:14016529-14016548 | None:intergenic | 45.0% | |
| CATAAGGACTGTCATCAGTG+AGG | + | chr1.4:14016739-14016758 | None:intergenic | 45.0% | |
| CATGCGTGCAGTATTTGGAA+AGG | - | chr1.4:14015426-14015445 | MS.gene32341:CDS | 45.0% | |
| GAAAGGGCCGGAAATTAAGT+GGG | - | chr1.4:14015390-14015409 | MS.gene32341:CDS | 45.0% | |
| GTATCTGATAGGCAAGGTAG+TGG | - | chr1.4:14014695-14014714 | MS.gene32341:intron | 45.0% | |
| TCCATCAAACAGGACGTTGA+AGG | + | chr1.4:14015778-14015797 | None:intergenic | 45.0% | |
| TCGCTCATAACGACATTGCA+AGG | + | chr1.4:14014302-14014321 | None:intergenic | 45.0% | |
| TCGGAATCCTTGTTACGATC+TGG | + | chr1.4:14015307-14015326 | None:intergenic | 45.0% | |
| TGTATATGTCGGTGGCAGTA+TGG | - | chr1.4:14016356-14016375 | MS.gene32341:CDS | 45.0% | |
| TTAGCAAGTATGATGCTGCC+AGG | - | chr1.4:14015548-14015567 | MS.gene32341:CDS | 45.0% | |
| TTCCGATTCACAGGACGTAT+CGG | - | chr1.4:14015321-14015340 | MS.gene32341:intron | 45.0% | |
| ! | AGAACTAGATTTTGCACCGG+TGG | + | chr1.4:14014066-14014085 | None:intergenic | 45.0% |
| ! | ATTGCAAGGCCGTTTCCTTT+TGG | + | chr1.4:14014288-14014307 | None:intergenic | 45.0% |
| !! | AAACAGCAGAAAGAGGTGTC+TGG | + | chr1.4:14016522-14016541 | None:intergenic | 45.0% |
| !! | GAACTAGATTTTGCACCGGT+GGG | + | chr1.4:14014065-14014084 | None:intergenic | 45.0% |
| !!! | TGTGGTCGCAATTTTGGTTG+CGG | - | chr1.4:14016482-14016501 | MS.gene32341:CDS | 45.0% |
| AGGAAACATTTGGCCGTGAC+GGG | - | chr1.4:14015518-14015537 | MS.gene32341:CDS | 50.0% | |
| ATTGACAGCGACGATGAACC+TGG | - | chr1.4:14014104-14014123 | MS.gene32341:CDS | 50.0% | |
| CAAGTATGATGCTGCCAGGT+AGG | - | chr1.4:14015552-14015571 | MS.gene32341:CDS | 50.0% | |
| GAGGAAACATTTGGCCGTGA+CGG | - | chr1.4:14015517-14015536 | MS.gene32341:CDS | 50.0% | |
| GATTCACAGGACGTATCGGA+TGG | - | chr1.4:14015325-14015344 | MS.gene32341:intron | 50.0% | |
| GCTCAATCCCAAACATGCGT+AGG | + | chr1.4:14016281-14016300 | None:intergenic | 50.0% | |
| GCTTGGGGAACAGATGTATG+AGG | - | chr1.4:14015498-14015517 | MS.gene32341:CDS | 50.0% | |
| TACGGTAGCAGAAAGGGGAA+AGG | - | chr1.4:14014739-14014758 | MS.gene32341:intron | 50.0% | |
| TCACTAGATAGGCAAGGTGG+TGG | - | chr1.4:14014143-14014162 | MS.gene32341:CDS | 50.0% | |
| ! | TCAGAGGCTGTACTTTGGGA+GGG | - | chr1.4:14016711-14016730 | MS.gene32341:CDS | 50.0% |
| CTCAGAGGCTGTACTTTGGG+AGG | - | chr1.4:14016710-14016729 | MS.gene32341:CDS | 55.0% | |
| GCAGCATCTACTACACCCAC+CGG | - | chr1.4:14014047-14014066 | MS.gene32341:CDS | 55.0% | |
| TGCTAAATCCACGCCCGTCA+CGG | + | chr1.4:14015534-14015553 | None:intergenic | 55.0% | |
| CGAGTCTGTAGACGACGCCT+TGG | + | chr1.4:14014401-14014420 | None:intergenic | 60.0% | |
| GGCGTCGTCTACAGACTCGA+AGG | - | chr1.4:14014402-14014421 | MS.gene32341:intron | 60.0% | |
| !! | ACATTTGGCCGTGACGGGCG+TGG | - | chr1.4:14015523-14015542 | MS.gene32341:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 14014044 | 14016895 | 14014044 | ID=MS.gene32341 |
| chr1.4 | mRNA | 14014044 | 14016895 | 14014044 | ID=MS.gene32341.t1;Parent=MS.gene32341 |
| chr1.4 | exon | 14015999 | 14016895 | 14015999 | ID=MS.gene32341.t1.exon1;Parent=MS.gene32341.t1 |
| chr1.4 | CDS | 14015999 | 14016895 | 14015999 | ID=cds.MS.gene32341.t1;Parent=MS.gene32341.t1 |
| chr1.4 | exon | 14015370 | 14015917 | 14015370 | ID=MS.gene32341.t1.exon2;Parent=MS.gene32341.t1 |
| chr1.4 | CDS | 14015370 | 14015917 | 14015370 | ID=cds.MS.gene32341.t1;Parent=MS.gene32341.t1 |
| chr1.4 | exon | 14014044 | 14014224 | 14014044 | ID=MS.gene32341.t1.exon3;Parent=MS.gene32341.t1 |
| chr1.4 | CDS | 14014044 | 14014224 | 14014044 | ID=cds.MS.gene32341.t1;Parent=MS.gene32341.t1 |
| Gene Sequence |
| Protein sequence |
