Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32552.t1 | XP_003616416.1 | 95.8 | 616 | 19 | 1 | 1 | 609 | 1 | 616 | 0.00E+00 | 1148.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32552.t1 | Q9FFY9 | 45.2 | 642 | 294 | 15 | 1 | 599 | 1 | 627 | 1.0e-121 | 438.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32552.t1 | G7KBS1 | 95.8 | 616 | 19 | 1 | 1 | 609 | 1 | 616 | 0.0e+00 | 1148.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049873 | MS.gene32552 | 0.802934 | 4.43E-49 | -1.69E-46 |
| MS.gene050559 | MS.gene32552 | 0.80739 | 5.17E-50 | -1.69E-46 |
| MS.gene050945 | MS.gene32552 | 0.800593 | 1.34E-48 | -1.69E-46 |
| MS.gene051678 | MS.gene32552 | 0.822558 | 2.22E-53 | -1.69E-46 |
| MS.gene051975 | MS.gene32552 | 0.802158 | 6.41E-49 | -1.69E-46 |
| MS.gene053006 | MS.gene32552 | 0.801968 | 7.01E-49 | -1.69E-46 |
| MS.gene053045 | MS.gene32552 | 0.832124 | 1.13E-55 | -1.69E-46 |
| MS.gene053294 | MS.gene32552 | 0.805818 | 1.11E-49 | -1.69E-46 |
| MS.gene053401 | MS.gene32552 | 0.832991 | 6.89E-56 | -1.69E-46 |
| MS.gene053963 | MS.gene32552 | 0.806316 | 8.73E-50 | -1.69E-46 |
| MS.gene053995 | MS.gene32552 | 0.801781 | 7.66E-49 | -1.69E-46 |
| MS.gene05548 | MS.gene32552 | 0.827521 | 1.49E-54 | -1.69E-46 |
| MS.gene055841 | MS.gene32552 | 0.822756 | 2.00E-53 | -1.69E-46 |
| MS.gene056986 | MS.gene32552 | 0.835186 | 1.94E-56 | -1.69E-46 |
| MS.gene057102 | MS.gene32552 | 0.834339 | 3.17E-56 | -1.69E-46 |
| MS.gene057705 | MS.gene32552 | 0.814861 | 1.24E-51 | -1.69E-46 |
| MS.gene058008 | MS.gene32552 | 0.803326 | 3.68E-49 | -1.69E-46 |
| MS.gene05985 | MS.gene32552 | -0.824231 | 9.03E-54 | -1.69E-46 |
| MS.gene060935 | MS.gene32552 | 0.816389 | 5.67E-52 | -1.69E-46 |
| MS.gene060937 | MS.gene32552 | 0.807602 | 4.67E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32552.t1 | MTR_5g080010 | 95.779 | 616 | 19 | 1 | 1 | 609 | 1 | 616 | 0.0 | 1206 |
| MS.gene32552.t1 | MTR_5g080010 | 95.529 | 425 | 19 | 0 | 1 | 425 | 1 | 425 | 0.0 | 785 |
| MS.gene32552.t1 | MTR_3g067935 | 53.701 | 635 | 248 | 13 | 1 | 599 | 1 | 625 | 0.0 | 587 |
| MS.gene32552.t1 | MTR_2g097290 | 43.290 | 462 | 225 | 6 | 157 | 588 | 253 | 707 | 1.94e-107 | 340 |
| MS.gene32552.t1 | MTR_7g061840 | 37.048 | 664 | 296 | 19 | 1 | 597 | 1 | 609 | 5.77e-107 | 335 |
| MS.gene32552.t1 | MTR_2g097290 | 37.778 | 405 | 211 | 8 | 157 | 529 | 253 | 648 | 6.58e-64 | 223 |
| MS.gene32552.t1 | MTR_2g097290 | 30.131 | 229 | 139 | 4 | 157 | 367 | 253 | 478 | 7.65e-15 | 77.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32552.t1 | AT5G13820 | 44.548 | 642 | 298 | 14 | 1 | 599 | 1 | 627 | 1.32e-151 | 451 |
| MS.gene32552.t1 | AT5G13820 | 44.548 | 642 | 298 | 14 | 1 | 599 | 1 | 627 | 1.32e-151 | 451 |
| MS.gene32552.t1 | AT3G12560 | 42.812 | 640 | 282 | 15 | 1 | 597 | 1 | 599 | 1.18e-140 | 422 |
| MS.gene32552.t1 | AT3G12560 | 42.812 | 640 | 282 | 15 | 1 | 597 | 1 | 599 | 1.18e-140 | 422 |
| MS.gene32552.t1 | AT3G46590 | 39.021 | 633 | 270 | 23 | 1 | 605 | 1 | 545 | 3.28e-101 | 318 |
| MS.gene32552.t1 | AT3G46590 | 38.801 | 634 | 271 | 24 | 1 | 605 | 1 | 546 | 2.40e-100 | 316 |
| MS.gene32552.t1 | AT3G46590 | 38.801 | 634 | 265 | 24 | 1 | 605 | 1 | 540 | 3.18e-99 | 313 |
| MS.gene32552.t1 | AT3G46590 | 39.189 | 592 | 244 | 23 | 42 | 605 | 2 | 505 | 4.92e-94 | 298 |
| MS.gene32552.t1 | AT5G59430 | 36.033 | 605 | 310 | 18 | 10 | 596 | 11 | 556 | 5.83e-83 | 271 |
| MS.gene32552.t1 | AT5G59430 | 41.809 | 409 | 182 | 10 | 189 | 588 | 188 | 549 | 6.90e-78 | 258 |
| MS.gene32552.t1 | AT5G59430 | 41.809 | 409 | 182 | 10 | 189 | 588 | 188 | 549 | 6.90e-78 | 258 |
| MS.gene32552.t1 | AT5G59430 | 41.809 | 409 | 182 | 10 | 189 | 588 | 188 | 549 | 6.90e-78 | 258 |
| MS.gene32552.t1 | AT5G59430 | 41.809 | 409 | 182 | 10 | 189 | 588 | 187 | 548 | 7.33e-78 | 258 |
| MS.gene32552.t1 | AT3G53790 | 42.857 | 336 | 128 | 7 | 259 | 588 | 119 | 396 | 9.60e-67 | 223 |
| MS.gene32552.t1 | AT3G46590 | 34.434 | 424 | 195 | 19 | 1 | 399 | 1 | 366 | 4.91e-41 | 154 |
Find 146 sgRNAs with CRISPR-Local
Find 270 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCCTCCAATTACTTTCTT+AGG | 0.109494 | 5.1:-62217704 | None:intergenic |
| TGCAACTGTTGCTTCATTAA+AGG | 0.170101 | 5.1:+62217918 | MS.gene32552:CDS |
| ATGATGACGAAAACTTTATT+AGG | 0.242004 | 5.1:+62217130 | MS.gene32552:CDS |
| GGAGCTATTGGATAGGGTTT+TGG | 0.246722 | 5.1:+62220206 | MS.gene32552:CDS |
| AATTACTTTCTTAGGGGAAT+TGG | 0.254177 | 5.1:-62217696 | None:intergenic |
| GGAAACAATTCCCCACAAAA+TGG | 0.254603 | 5.1:-62217054 | None:intergenic |
| AATTCCCCTAAGAAAGTAAT+TGG | 0.278506 | 5.1:+62217698 | MS.gene32552:CDS |
| AGAGACTTGGTAATGGATTC+AGG | 0.281628 | 5.1:+62216495 | MS.gene32552:CDS |
| GAAGCAACAGTTGCAGTTTC+GGG | 0.282983 | 5.1:-62217910 | None:intergenic |
| TGCAAAAGTTCGCGTTTCTA+AGG | 0.302423 | 5.1:+62217742 | MS.gene32552:CDS |
| TTACTTACTCTTACAGATCT+TGG | 0.307105 | 5.1:-62216548 | None:intergenic |
| TGGTTTGTGTGCAGGATAAA+TGG | 0.309116 | 5.1:+62220121 | MS.gene32552:intron |
| TGAAGCAACAGTTGCAGTTT+CGG | 0.311212 | 5.1:-62217911 | None:intergenic |
| AGTTTCGCATCGAGTCATTC+AGG | 0.318139 | 5.1:+62217863 | MS.gene32552:CDS |
| TTCAAATTGGAGAATAGGTT+TGG | 0.318263 | 5.1:+62216904 | MS.gene32552:CDS |
| TCCTCCTTGCTTACAAATAC+TGG | 0.330363 | 5.1:+62219105 | MS.gene32552:CDS |
| ACATTGCACGCAAAATAATT+AGG | 0.331937 | 5.1:+62217199 | MS.gene32552:CDS |
| CGAAATCGCTCTTCTGTTAA+CGG | 0.335512 | 5.1:-62216775 | None:intergenic |
| GAGGCGGTGATGACTATAAT+AGG | 0.341788 | 5.1:+62218104 | MS.gene32552:CDS |
| GGGAGGAATGCTAGTAAGTT+AGG | 0.342627 | 5.1:+62217099 | MS.gene32552:CDS |
| AGGGATTTCTGTTGCCAAAC+AGG | 0.342636 | 5.1:+62219080 | MS.gene32552:CDS |
| GGAACTCCCTCCATAGATTC+AGG | 0.342756 | 5.1:+62219060 | MS.gene32552:CDS |
| TGGAGCAACCTTCCAGTGTT+TGG | 0.343786 | 5.1:-62217241 | None:intergenic |
| TTCCTCCAATTACTTTCTTA+GGG | 0.346950 | 5.1:-62217703 | None:intergenic |
| GCCAGTTCCTCAGGAGCTAT+TGG | 0.348630 | 5.1:+62220194 | MS.gene32552:CDS |
| CTTGGACATCTAGGTACCTT+AGG | 0.349158 | 5.1:-62216530 | None:intergenic |
| TCAACTTCAGACACAGAAAA+TGG | 0.357936 | 5.1:-62219312 | None:intergenic |
| GCATGTTGGTGTTCTTGTTA+AGG | 0.368440 | 5.1:+62218136 | MS.gene32552:CDS |
| AACCTTCCAGTGTTTGGAAT+TGG | 0.390971 | 5.1:-62217235 | None:intergenic |
| CGCGTTTCTAAGGATTCTAA+TGG | 0.394563 | 5.1:+62217752 | MS.gene32552:CDS |
| TCCAATAGCTCCTGAGGAAC+TGG | 0.395946 | 5.1:-62220195 | None:intergenic |
| TTCAGACTTCACATTATTGT+TGG | 0.402330 | 5.1:-62216878 | None:intergenic |
| GCTTCTCCAGTTGTTTGTGC+TGG | 0.408670 | 5.1:+62218263 | MS.gene32552:CDS |
| AAGCAAGGAGGAACCCTGTT+TGG | 0.410467 | 5.1:-62219094 | None:intergenic |
| TGTTCACAATCTTTCAACTT+TGG | 0.411776 | 5.1:-62217261 | None:intergenic |
| AACAGAAATCCCTGAATCTA+TGG | 0.411949 | 5.1:-62219070 | None:intergenic |
| GGATCACCAGCACAAACAAC+TGG | 0.414617 | 5.1:-62218269 | None:intergenic |
| CATGTTGGTGTTCTTGTTAA+GGG | 0.416802 | 5.1:+62218137 | MS.gene32552:CDS |
| GGAACGTCGACGTAAAGTTC+TGG | 0.420090 | 5.1:-62217889 | None:intergenic |
| GCTTGACATGCTGCTTGGAT+TGG | 0.423506 | 5.1:-62220254 | None:intergenic |
| TGACATGCTGCTTGGATTGG+TGG | 0.426360 | 5.1:-62220251 | None:intergenic |
| GAAACAATTCCCCACAAAAT+GGG | 0.429990 | 5.1:-62217053 | None:intergenic |
| CATCACGAGGCTGACAGTTC+AGG | 0.432205 | 5.1:+62216967 | MS.gene32552:CDS |
| TAATGGATTCAGGGACTATC+AGG | 0.432252 | 5.1:+62216505 | MS.gene32552:CDS |
| GAGAGGACAGCCAGTTCCTC+AGG | 0.432830 | 5.1:+62220185 | MS.gene32552:CDS |
| TTGATGCTTGACATGCTGCT+TGG | 0.441541 | 5.1:-62220259 | None:intergenic |
| GATAAACTAACACAAGATTC+CGG | 0.452961 | 5.1:+62219186 | MS.gene32552:CDS |
| CTTACAGATCTTGGACATCT+AGG | 0.453561 | 5.1:-62216539 | None:intergenic |
| GTTCATGCAGTTGAGGAAGT+TGG | 0.454012 | 5.1:+62219342 | MS.gene32552:CDS |
| CAAGGGAAGAAGCTGATTCA+TGG | 0.454467 | 5.1:-62219149 | None:intergenic |
| TTCCTTGAAAAGGAAGCATT+GGG | 0.461169 | 5.1:-62217075 | None:intergenic |
| TCCTCAGGAGCTATTGGATA+GGG | 0.470302 | 5.1:+62220200 | MS.gene32552:CDS |
| ATTCCTCCCATTCCTTGAAA+AGG | 0.474110 | 5.1:-62217085 | None:intergenic |
| TAGGACTTATGTAGACTTGA+AGG | 0.479281 | 5.1:+62219490 | MS.gene32552:CDS |
| GGCTGTCCTCTCCTTTGTTG+AGG | 0.480024 | 5.1:-62220174 | None:intergenic |
| ATTCCTTGAAAAGGAAGCAT+TGG | 0.481452 | 5.1:-62217076 | None:intergenic |
| TTGGATTTGTCTAGGTCTCT+AGG | 0.484229 | 5.1:+62219039 | MS.gene32552:intron |
| GCAGTTGAGGAAGTTGGAAC+TGG | 0.488859 | 5.1:+62219348 | MS.gene32552:CDS |
| AGAGGAAGAAATTATCAGAC+AGG | 0.491022 | 5.1:+62217627 | MS.gene32552:CDS |
| GAACTACTTGCATCTTTAGC+CGG | 0.491484 | 5.1:+62216697 | MS.gene32552:CDS |
| GAGAAACATCTTGAGAGTGC+TGG | 0.500393 | 5.1:+62216826 | MS.gene32552:CDS |
| CGTGAAGGTCTAAAAGCCTT+CGG | 0.501813 | 5.1:-62217174 | None:intergenic |
| TGGTCCAGTGTTCTGATTCA+CGG | 0.506571 | 5.1:-62219259 | None:intergenic |
| ACAGAAGAGCGATTTCGTAA+TGG | 0.507986 | 5.1:+62216781 | MS.gene32552:CDS |
| AGACACAGAAAATGGTCTCC+TGG | 0.509618 | 5.1:-62219304 | None:intergenic |
| AGCTTGTACAGCGTCGAACC+AGG | 0.512219 | 5.1:+62219286 | MS.gene32552:CDS |
| AACAGAACTCTTCGTCAGAC+TGG | 0.514395 | 5.1:+62218179 | MS.gene32552:CDS |
| CCGCTCAAGTTGGCTAAAGA+AGG | 0.515374 | 5.1:-62217018 | None:intergenic |
| CAAGAGTGGCCATCCTCGAC+TGG | 0.517246 | 5.1:-62216667 | None:intergenic |
| TGCGACCCTCGAGTCATAAG+AGG | 0.517455 | 5.1:+62217558 | MS.gene32552:CDS |
| TTGAAGAAGAGACTTGGTAA+TGG | 0.519239 | 5.1:+62216488 | MS.gene32552:CDS |
| AGAAACATCTTGAGAGTGCT+GGG | 0.523924 | 5.1:+62216827 | MS.gene32552:CDS |
| GAACTCCCTCCATAGATTCA+GGG | 0.526972 | 5.1:+62219061 | MS.gene32552:CDS |
| GAGACTTGGTAATGGATTCA+GGG | 0.529036 | 5.1:+62216496 | MS.gene32552:CDS |
| GATTGTGAACATTCTCGCTA+TGG | 0.532088 | 5.1:+62217273 | MS.gene32552:CDS |
| CACAAGTGGTTGGACAACAT+TGG | 0.539637 | 5.1:-62220283 | None:intergenic |
| TCAAGTCTACATAAGTCCTA+TGG | 0.543438 | 5.1:-62219487 | None:intergenic |
| GGTCCAGTGTTCTGATTCAC+GGG | 0.543575 | 5.1:-62219258 | None:intergenic |
| AATGCCTCAGTACTATGAGC+TGG | 0.546437 | 5.1:-62219225 | None:intergenic |
| AGGTCTAAAAGCCTTCGGTT+TGG | 0.548415 | 5.1:-62217169 | None:intergenic |
| GGGATTTCTGTTGCCAAACA+GGG | 0.550679 | 5.1:+62219081 | MS.gene32552:CDS |
| TTGGACATCTAGGTACCTTA+GGG | 0.553309 | 5.1:-62216529 | None:intergenic |
| AGATAAACTCGGTTTCGTGT+TGG | 0.553459 | 5.1:+62218223 | MS.gene32552:CDS |
| ATGTAGCATCTCAGCCTACC+AGG | 0.553875 | 5.1:+62218300 | MS.gene32552:CDS |
| AGTGTCACACTCTGTTGAAG+AGG | 0.554973 | 5.1:+62217609 | MS.gene32552:CDS |
| TCTACATAATCACAAGTGGT+TGG | 0.557057 | 5.1:-62220293 | None:intergenic |
| TTTAATGTTACCGCTCAAGT+TGG | 0.557954 | 5.1:-62217028 | None:intergenic |
| AGCACTTGTTCATGCAGTTG+AGG | 0.558933 | 5.1:+62219335 | MS.gene32552:CDS |
| TTCCAATTCCAAACACTGGA+AGG | 0.567244 | 5.1:+62217233 | MS.gene32552:CDS |
| ACTCTCCTTCAGCAACTCAC+CGG | 0.568548 | 5.1:-62216716 | None:intergenic |
| TGGAACAGAAACTAGCGCTC+CGG | 0.569116 | 5.1:-62219205 | None:intergenic |
| GGTTCGACGCTGTACAAGCT+CGG | 0.569476 | 5.1:-62219283 | None:intergenic |
| TTTAGCCGGTGAGTTGCTGA+AGG | 0.574743 | 5.1:+62216711 | MS.gene32552:CDS |
| CAGGGACTATCAGGTCCCTA+AGG | 0.575068 | 5.1:+62216514 | MS.gene32552:CDS |
| TCAACTTTCGCTCACCTGGT+AGG | 0.576936 | 5.1:-62218314 | None:intergenic |
| ACCGCCAGTATTTGTAAGCA+AGG | 0.577016 | 5.1:-62219109 | None:intergenic |
| TCCCCTAAGAAAGTAATTGG+AGG | 0.577061 | 5.1:+62217701 | MS.gene32552:CDS |
| GCAAAATAATTAGGAAGCGG+TGG | 0.577586 | 5.1:+62217208 | MS.gene32552:CDS |
| GTCTTCCTCTTATGACTCGA+GGG | 0.577638 | 5.1:-62217563 | None:intergenic |
| AGTCTTCCTCTTATGACTCG+AGG | 0.577787 | 5.1:-62217564 | None:intergenic |
| CACGCAAAATAATTAGGAAG+CGG | 0.581824 | 5.1:+62217205 | MS.gene32552:CDS |
| GTGATGACTATAATAGGAGG+TGG | 0.582455 | 5.1:+62218110 | MS.gene32552:CDS |
| GGAGAAGCTTGAGAAGAGCT+AGG | 0.582931 | 5.1:-62218248 | None:intergenic |
| CGACGCTGTACAAGCTCGGA+TGG | 0.583494 | 5.1:-62219279 | None:intergenic |
| TCCTCCAATTACTTTCTTAG+GGG | 0.586162 | 5.1:-62217702 | None:intergenic |
| TGAGATGCTACATGGTGAGA+AGG | 0.589368 | 5.1:-62218290 | None:intergenic |
| TTCAAGAAACCAGTCGAGGA+TGG | 0.590011 | 5.1:+62216658 | MS.gene32552:CDS |
| ATCAGATGCATTGCTAGAGG+TGG | 0.590241 | 5.1:-62216746 | None:intergenic |
| ATCTCTCCTCAACAAAGGAG+AGG | 0.592039 | 5.1:+62220168 | MS.gene32552:CDS |
| CAAAGTTTGCACCAAACCGA+AGG | 0.594191 | 5.1:+62217158 | MS.gene32552:CDS |
| TTCCTCAGGAGCTATTGGAT+AGG | 0.595354 | 5.1:+62220199 | MS.gene32552:CDS |
| TATCAGATATAGTGTCAGCA+AGG | 0.595686 | 5.1:-62219167 | None:intergenic |
| TTTATAGAGGACAGTTATGG+AGG | 0.597438 | 5.1:+62218085 | MS.gene32552:intron |
| AGAAATCCCTGAATCTATGG+AGG | 0.598839 | 5.1:-62219067 | None:intergenic |
| AACATCAGATGCATTGCTAG+AGG | 0.601082 | 5.1:-62216749 | None:intergenic |
| CTGAACTGTCAGCCTCGTGA+TGG | 0.601669 | 5.1:-62216966 | None:intergenic |
| GAGGAAGAAATTATCAGACA+GGG | 0.603590 | 5.1:+62217628 | MS.gene32552:CDS |
| TTGAGGAAGTTGGAACTGGA+AGG | 0.604280 | 5.1:+62219352 | MS.gene32552:CDS |
| AAACAATTCCCCACAAAATG+GGG | 0.608737 | 5.1:-62217052 | None:intergenic |
| GGACTTCCAATTCCAAACAC+TGG | 0.611770 | 5.1:+62217229 | MS.gene32552:CDS |
| ATAGAGGACAGTTATGGAGG+CGG | 0.617071 | 5.1:+62218088 | MS.gene32552:intron |
| ACCCTATCCAATAGCTCCTG+AGG | 0.621261 | 5.1:-62220201 | None:intergenic |
| TCGATGCTAACTCATGGTGG+AGG | 0.623580 | 5.1:+62217653 | MS.gene32552:CDS |
| TCTTTCTACATAATCACAAG+TGG | 0.623634 | 5.1:-62220297 | None:intergenic |
| TTGCGTGCAATGTATCGTGA+AGG | 0.623664 | 5.1:-62217189 | None:intergenic |
| TGGTAGGCTGAGATGCTACA+TGG | 0.626444 | 5.1:-62218298 | None:intergenic |
| CCTTCTTTAGCCAACTTGAG+CGG | 0.626589 | 5.1:+62217018 | MS.gene32552:CDS |
| ATGTTGGTGTTCTTGTTAAG+GGG | 0.626831 | 5.1:+62218138 | MS.gene32552:CDS |
| AGGGGTTCGATGCTAACTCA+TGG | 0.630655 | 5.1:+62217647 | MS.gene32552:CDS |
| GTAGTTCAAAAGCACAAGAG+TGG | 0.631884 | 5.1:-62216681 | None:intergenic |
| ATCAGATATAGTGTCAGCAA+GGG | 0.636117 | 5.1:-62219166 | None:intergenic |
| AAAGAAAATATAGATAAACT+CGG | 0.652207 | 5.1:+62218212 | MS.gene32552:CDS |
| TCCTTGCTTACAAATACTGG+CGG | 0.652781 | 5.1:+62219108 | MS.gene32552:CDS |
| GTTCCCGTGAATCAGAACAC+TGG | 0.655650 | 5.1:+62219255 | MS.gene32552:CDS |
| GAAATCCCTGAATCTATGGA+GGG | 0.665973 | 5.1:-62219066 | None:intergenic |
| ATAGGAGGTGGAGTGCATGT+TGG | 0.667170 | 5.1:+62218122 | MS.gene32552:CDS |
| GCGGTGATGACTATAATAGG+AGG | 0.667399 | 5.1:+62218107 | MS.gene32552:CDS |
| TGTTCCAGCTCATAGTACTG+AGG | 0.671950 | 5.1:+62219221 | MS.gene32552:CDS |
| TGCGTTCAAGAAACCAGTCG+AGG | 0.672753 | 5.1:+62216654 | MS.gene32552:CDS |
| ATTCATGGTTCATGTCAACA+AGG | 0.686818 | 5.1:-62219134 | None:intergenic |
| ATGGTGTTGAAGAAGAGACT+TGG | 0.697633 | 5.1:+62216482 | MS.gene32552:CDS |
| AGGAAGAAATTATCAGACAG+GGG | 0.702812 | 5.1:+62217629 | MS.gene32552:CDS |
| GGTTCGATGCTAACTCATGG+TGG | 0.706099 | 5.1:+62217650 | MS.gene32552:CDS |
| GTAATTGGAGGAAATAACCG+TGG | 0.709826 | 5.1:+62217713 | MS.gene32552:CDS |
| GCCAGTATTTGTAAGCAAGG+AGG | 0.726150 | 5.1:-62219106 | None:intergenic |
| AGAAGTTTCAAACCATCACG+AGG | 0.743753 | 5.1:+62216954 | MS.gene32552:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAAAAATGTATAAATAAA+GGG | + | chr5.1:62218508-62218527 | MS.gene32552:intron | 10.0% |
| !! | TAAGAAAAATGTATAAATAA+AGG | + | chr5.1:62218507-62218526 | MS.gene32552:intron | 10.0% |
| !!! | TTTTCAGTTAAAAAAAAAAA+AGG | - | chr5.1:62217512-62217531 | None:intergenic | 10.0% |
| !! | AAAAAAAAAAGGAAAAAACT+TGG | - | chr5.1:62217501-62217520 | None:intergenic | 15.0% |
| !! | AAAAAAAAAGGAAAAAACTT+GGG | - | chr5.1:62217500-62217519 | None:intergenic | 15.0% |
| !! | AAAGAAAATATAGATAAACT+CGG | + | chr5.1:62218212-62218231 | MS.gene32552:CDS | 15.0% |
| !! | AGAAAAATGTATAAATAAAG+GGG | + | chr5.1:62218509-62218528 | MS.gene32552:intron | 15.0% |
| !! | ATAAGAATTATTCAATTGAA+TGG | - | chr5.1:62218998-62219017 | None:intergenic | 15.0% |
| !! | TATTTAGTGTTATATTGTAT+TGG | + | chr5.1:62218572-62218591 | MS.gene32552:intron | 15.0% |
| !!! | ATTGTTTAACTTTTTTATAG+AGG | + | chr5.1:62218072-62218091 | MS.gene32552:intron | 15.0% |
| !! | AAAGTGGAATATATTGTATT+GGG | + | chr5.1:62218532-62218551 | MS.gene32552:intron | 20.0% |
| !! | AAGAATTAAGATATGATAGA+AGG | - | chr5.1:62219521-62219540 | None:intergenic | 20.0% |
| !! | AGAATTAAGATATGATAGAA+GGG | - | chr5.1:62219520-62219539 | None:intergenic | 20.0% |
| !! | ATAGCTTATATTAAAACAGT+TGG | - | chr5.1:62218755-62218774 | None:intergenic | 20.0% |
| !! | ATCTTATAAGTGTTTATGTT+TGG | + | chr5.1:62218405-62218424 | MS.gene32552:intron | 20.0% |
| !! | GTGAAAGAACAATAAATTTA+AGG | - | chr5.1:62219822-62219841 | None:intergenic | 20.0% |
| !! | TAAATTTAAAGAGAAAGATG+AGG | + | chr5.1:62219571-62219590 | MS.gene32552:intron | 20.0% |
| !! | TCAAAATAAGGAAAATGTTA+TGG | - | chr5.1:62219863-62219882 | None:intergenic | 20.0% |
| !! | TTAATCATAAATATCAGACT+CGG | + | chr5.1:62220003-62220022 | MS.gene32552:intron | 20.0% |
| !!! | AAATTTTCAAATTGGAGAAT+AGG | + | chr5.1:62216899-62216918 | MS.gene32552:CDS | 20.0% |
| !!! | AATGTGTAATTTGTAGATAA+TGG | + | chr5.1:62217533-62217552 | MS.gene32552:intron | 20.0% |
| !!! | ATTTAGTTTCATCAATAGTT+TGG | + | chr5.1:62218007-62218026 | MS.gene32552:intron | 20.0% |
| !!! | CTTTATCTAATTTTTGCAAT+TGG | + | chr5.1:62219020-62219039 | MS.gene32552:intron | 20.0% |
| !!! | GACACTTTTTTTTAGAAAAT+GGG | + | chr5.1:62218642-62218661 | MS.gene32552:intron | 20.0% |
| !!! | TCTTAGTTTTAAGTTAGATT+TGG | - | chr5.1:62219766-62219785 | None:intergenic | 20.0% |
| ! | AAAATCAATTGCAAGAATTG+CGG | - | chr5.1:62216577-62216596 | None:intergenic | 25.0% |
| ! | AAAATTGTCACCAACTAAAA+GGG | - | chr5.1:62217453-62217472 | None:intergenic | 25.0% |
| ! | ACTTAGTTTATTGCCATTAA+AGG | - | chr5.1:62218921-62218940 | None:intergenic | 25.0% |
| ! | ATCCTGAAGAAATTTGATTA+CGG | + | chr5.1:62218965-62218984 | MS.gene32552:intron | 25.0% |
| ! | GAAAGTGGAATATATTGTAT+TGG | + | chr5.1:62218531-62218550 | MS.gene32552:intron | 25.0% |
| ! | TAAAATTGTCACCAACTAAA+AGG | - | chr5.1:62217454-62217473 | None:intergenic | 25.0% |
| ! | TCTAATGGTAATTTATTGCA+TGG | + | chr5.1:62217767-62217786 | MS.gene32552:intron | 25.0% |
| ! | TTTAATGGCAATAAACTAAG+TGG | + | chr5.1:62218920-62218939 | MS.gene32552:intron | 25.0% |
| !! | ATGATGACGAAAACTTTATT+AGG | + | chr5.1:62217130-62217149 | MS.gene32552:CDS | 25.0% |
| !! | TTAAAGGTATGATGATTGAA+TGG | + | chr5.1:62217934-62217953 | MS.gene32552:intron | 25.0% |
| !! | TTGAAATGAGTCAGTTATTT+TGG | + | chr5.1:62218619-62218638 | MS.gene32552:intron | 25.0% |
| !!! | ATTTTTTTAAACTATGCAGG+TGG | + | chr5.1:62219429-62219448 | MS.gene32552:intron | 25.0% |
| !!! | GAAGTCTGAAATTTTCAAAT+TGG | + | chr5.1:62216891-62216910 | MS.gene32552:CDS | 25.0% |
| !!! | GACATTTTTTTAAACTATGC+AGG | + | chr5.1:62219426-62219445 | MS.gene32552:intron | 25.0% |
| !!! | GATTTTTACCTGTTTTTGTT+TGG | + | chr5.1:62216591-62216610 | MS.gene32552:intron | 25.0% |
| !!! | GGACACTTTTTTTTAGAAAA+TGG | + | chr5.1:62218641-62218660 | MS.gene32552:intron | 25.0% |
| !!! | GTTGTTTTTATAAGCTATCA+TGG | + | chr5.1:62218777-62218796 | MS.gene32552:intron | 25.0% |
| !!! | TAGAATTATGCAGTTGTTTT+TGG | + | chr5.1:62219947-62219966 | MS.gene32552:intron | 25.0% |
| !!! | TGAAATGAGTCAGTTATTTT+GGG | + | chr5.1:62218620-62218639 | MS.gene32552:intron | 25.0% |
| !!! | TTTTTTATAGAGGACAGTTA+TGG | + | chr5.1:62218082-62218101 | MS.gene32552:intron | 25.0% |
| AACCAAAAGTTCAAGTCATT+AGG | - | chr5.1:62220106-62220125 | None:intergenic | 30.0% | |
| AACCGTAATCAAATTTCTTC+AGG | - | chr5.1:62218970-62218989 | None:intergenic | 30.0% | |
| AATTACTTTCTTAGGGGAAT+TGG | - | chr5.1:62217699-62217718 | None:intergenic | 30.0% | |
| AATTCCCCTAAGAAAGTAAT+TGG | + | chr5.1:62217698-62217717 | MS.gene32552:CDS | 30.0% | |
| ACATTGCACGCAAAATAATT+AGG | + | chr5.1:62217199-62217218 | MS.gene32552:CDS | 30.0% | |
| AGTTTCATCAATAGTTTGGA+GGG | + | chr5.1:62218011-62218030 | MS.gene32552:intron | 30.0% | |
| ATGCAACTACGATCAAAATA+AGG | - | chr5.1:62219875-62219894 | None:intergenic | 30.0% | |
| CACATATATGTCTATGAGTT+AGG | + | chr5.1:62217342-62217361 | MS.gene32552:intron | 30.0% | |
| CTAGTACATGAACTCAAATA+AGG | + | chr5.1:62218882-62218901 | MS.gene32552:intron | 30.0% | |
| GATAAACTAACACAAGATTC+CGG | + | chr5.1:62219186-62219205 | MS.gene32552:CDS | 30.0% | |
| GATCATTATTTGACATGCTT+AGG | + | chr5.1:62219713-62219732 | MS.gene32552:intron | 30.0% | |
| TAGTTTCATCAATAGTTTGG+AGG | + | chr5.1:62218010-62218029 | MS.gene32552:intron | 30.0% | |
| TGTATAAATAAAGGGGAAAG+TGG | + | chr5.1:62218516-62218535 | MS.gene32552:intron | 30.0% | |
| TGTTCACAATCTTTCAACTT+TGG | - | chr5.1:62217264-62217283 | None:intergenic | 30.0% | |
| TTACTTACTCTTACAGATCT+TGG | - | chr5.1:62216551-62216570 | None:intergenic | 30.0% | |
| TTCAAATTGGAGAATAGGTT+TGG | + | chr5.1:62216904-62216923 | MS.gene32552:CDS | 30.0% | |
| TTCAGACTTCACATTATTGT+TGG | - | chr5.1:62216881-62216900 | None:intergenic | 30.0% | |
| TTCCTCCAATTACTTTCTTA+GGG | - | chr5.1:62217706-62217725 | None:intergenic | 30.0% | |
| TTTCCTCCAATTACTTTCTT+AGG | - | chr5.1:62217707-62217726 | None:intergenic | 30.0% | |
| ! | AACATTAAATCCCCATTTTG+TGG | + | chr5.1:62217042-62217061 | MS.gene32552:CDS | 30.0% |
| ! | ACATTAAATCCCCATTTTGT+GGG | + | chr5.1:62217043-62217062 | MS.gene32552:CDS | 30.0% |
| ! | TAACACCTATAATGGAAAAG+TGG | + | chr5.1:62219594-62219613 | MS.gene32552:intron | 30.0% |
| ! | TTCCTAATGACTTGAACTTT+TGG | + | chr5.1:62220101-62220120 | MS.gene32552:intron | 30.0% |
| ! | TTGAGTTTGAAATTCTTCAG+AGG | + | chr5.1:62216626-62216645 | MS.gene32552:intron | 30.0% |
| ! | TTTTGCAATTGGATTTGTCT+AGG | + | chr5.1:62219031-62219050 | MS.gene32552:intron | 30.0% |
| !! | TATTGCATTAGAGGTTTTGA+CGG | + | chr5.1:62219622-62219641 | MS.gene32552:intron | 30.0% |
| !! | TTGTACCACTTTTCCATTAT+AGG | - | chr5.1:62219602-62219621 | None:intergenic | 30.0% |
| !!! | TTTACCTGTTTTTGTTTGGA+TGG | + | chr5.1:62216595-62216614 | MS.gene32552:intron | 30.0% |
| AAACAATTCCCCACAAAATG+GGG | - | chr5.1:62217055-62217074 | None:intergenic | 35.0% | |
| AACACCATCCAAACAAAAAC+AGG | - | chr5.1:62216602-62216621 | None:intergenic | 35.0% | |
| AACAGAAATCCCTGAATCTA+TGG | - | chr5.1:62219073-62219092 | None:intergenic | 35.0% | |
| AGAAAATGGGTCAGTTATTC+CGG | + | chr5.1:62218655-62218674 | MS.gene32552:intron | 35.0% | |
| AGAGGAAGAAATTATCAGAC+AGG | + | chr5.1:62217627-62217646 | MS.gene32552:CDS | 35.0% | |
| AGATGAGGTAACACCTATAA+TGG | + | chr5.1:62219586-62219605 | MS.gene32552:intron | 35.0% | |
| AGGAAGAAATTATCAGACAG+GGG | + | chr5.1:62217629-62217648 | MS.gene32552:CDS | 35.0% | |
| ATATGTTCTTTGCATCCTAC+TGG | + | chr5.1:62217811-62217830 | MS.gene32552:intron | 35.0% | |
| ATCAGATATAGTGTCAGCAA+GGG | - | chr5.1:62219169-62219188 | None:intergenic | 35.0% | |
| ATTCATGGTTCATGTCAACA+AGG | - | chr5.1:62219137-62219156 | None:intergenic | 35.0% | |
| CAAAAATCTCTCCTCAACAA+AGG | + | chr5.1:62220163-62220182 | MS.gene32552:CDS | 35.0% | |
| CACGCAAAATAATTAGGAAG+CGG | + | chr5.1:62217205-62217224 | MS.gene32552:CDS | 35.0% | |
| CCATTACAACGTATAGCTAA+TGG | - | chr5.1:62220068-62220087 | None:intergenic | 35.0% | |
| CCATTAGCTATACGTTGTAA+TGG | + | chr5.1:62220065-62220084 | MS.gene32552:intron | 35.0% | |
| CTTGTTAAGGGGAAAAAAGT+TGG | + | chr5.1:62218149-62218168 | MS.gene32552:CDS | 35.0% | |
| GAAACAATTCCCCACAAAAT+GGG | - | chr5.1:62217056-62217075 | None:intergenic | 35.0% | |
| GAGGAAGAAATTATCAGACA+GGG | + | chr5.1:62217628-62217647 | MS.gene32552:CDS | 35.0% | |
| GTGGTACAATATTGCATTAG+AGG | + | chr5.1:62219613-62219632 | MS.gene32552:intron | 35.0% | |
| GTTTCATCAATAGTTTGGAG+GGG | + | chr5.1:62218012-62218031 | MS.gene32552:intron | 35.0% | |
| TAGGACTTATGTAGACTTGA+AGG | + | chr5.1:62219490-62219509 | MS.gene32552:CDS | 35.0% | |
| TATCAGATATAGTGTCAGCA+AGG | - | chr5.1:62219170-62219189 | None:intergenic | 35.0% | |
| TCAAATAAGGCAATTCGAAC+AGG | + | chr5.1:62218895-62218914 | MS.gene32552:intron | 35.0% | |
| TCAACTTCAGACACAGAAAA+TGG | - | chr5.1:62219315-62219334 | None:intergenic | 35.0% | |
| TCAAGTCTACATAAGTCCTA+TGG | - | chr5.1:62219490-62219509 | None:intergenic | 35.0% | |
| TCCTCCAATTACTTTCTTAG+GGG | - | chr5.1:62217705-62217724 | None:intergenic | 35.0% | |
| TTTAATGTTACCGCTCAAGT+TGG | - | chr5.1:62217031-62217050 | None:intergenic | 35.0% | |
| TTTATAGAGGACAGTTATGG+AGG | + | chr5.1:62218085-62218104 | MS.gene32552:intron | 35.0% | |
| ! | ATGTTGGTGTTCTTGTTAAG+GGG | + | chr5.1:62218138-62218157 | MS.gene32552:CDS | 35.0% |
| ! | ATTCCTTGAAAAGGAAGCAT+TGG | - | chr5.1:62217079-62217098 | None:intergenic | 35.0% |
| ! | CATGTTGGTGTTCTTGTTAA+GGG | + | chr5.1:62218137-62218156 | MS.gene32552:CDS | 35.0% |
| ! | CATTAAATCCCCATTTTGTG+GGG | + | chr5.1:62217044-62217063 | MS.gene32552:CDS | 35.0% |
| ! | GTTTGAAATTCTTCAGAGGA+CGG | + | chr5.1:62216630-62216649 | MS.gene32552:intron | 35.0% |
| ! | TGCAACTGTTGCTTCATTAA+AGG | + | chr5.1:62217918-62217937 | MS.gene32552:CDS | 35.0% |
| ! | TTGAAGAAGAGACTTGGTAA+TGG | + | chr5.1:62216488-62216507 | MS.gene32552:CDS | 35.0% |
| ! | TTTCTTTGCACCCTTTTAGT+TGG | + | chr5.1:62217440-62217459 | MS.gene32552:intron | 35.0% |
| !! | AATGCTTCCTTTTCAAGGAA+TGG | + | chr5.1:62217078-62217097 | MS.gene32552:CDS | 35.0% |
| !! | ATGCTTCCTTTTCAAGGAAT+GGG | + | chr5.1:62217079-62217098 | MS.gene32552:CDS | 35.0% |
| !! | ATTGCATTAGAGGTTTTGAC+GGG | + | chr5.1:62219623-62219642 | MS.gene32552:intron | 35.0% |
| !! | GTTGGATTCACTTTTGTTAC+AGG | + | chr5.1:62219661-62219680 | MS.gene32552:intron | 35.0% |
| !! | TGCATGGAGTTCATTAGTTT+TGG | + | chr5.1:62217783-62217802 | MS.gene32552:intron | 35.0% |
| !! | TTCCTTGAAAAGGAAGCATT+GGG | - | chr5.1:62217078-62217097 | None:intergenic | 35.0% |
| !!! | GAGTTAGGCTGTTCTTTTTT+TGG | + | chr5.1:62217357-62217376 | MS.gene32552:intron | 35.0% |
| !!! | GGGACATTTTAGTTTAAGGT+TGG | + | chr5.1:62219643-62219662 | MS.gene32552:intron | 35.0% |
| !!! | TGACGGGACATTTTAGTTTA+AGG | + | chr5.1:62219639-62219658 | MS.gene32552:intron | 35.0% |
| AACATCAGATGCATTGCTAG+AGG | - | chr5.1:62216752-62216771 | None:intergenic | 40.0% | |
| AATCTGTGTGAAATGAGCCA+AGG | - | chr5.1:62218488-62218507 | None:intergenic | 40.0% | |
| ACAGAAGAGCGATTTCGTAA+TGG | + | chr5.1:62216781-62216800 | MS.gene32552:CDS | 40.0% | |
| ACTTTCGCTGCCTAAAAAGA+CGG | - | chr5.1:62219398-62219417 | None:intergenic | 40.0% | |
| AGAAATCCCTGAATCTATGG+AGG | - | chr5.1:62219070-62219089 | None:intergenic | 40.0% | |
| AGAAGTTTCAAACCATCACG+AGG | + | chr5.1:62216954-62216973 | MS.gene32552:CDS | 40.0% | |
| AGATAAACTCGGTTTCGTGT+TGG | + | chr5.1:62218223-62218242 | MS.gene32552:CDS | 40.0% | |
| AGCCAAGGGGTCAAATAAAT+TGG | - | chr5.1:62218473-62218492 | None:intergenic | 40.0% | |
| AGGGGTCAAATAAATTGGGA+CGG | - | chr5.1:62218468-62218487 | None:intergenic | 40.0% | |
| ATCTGTGTGAAATGAGCCAA+GGG | - | chr5.1:62218487-62218506 | None:intergenic | 40.0% | |
| ATTCCTCCCATTCCTTGAAA+AGG | - | chr5.1:62217088-62217107 | None:intergenic | 40.0% | |
| CAATTCGAACAGGCCTTTAA+TGG | + | chr5.1:62218905-62218924 | MS.gene32552:intron | 40.0% | |
| CGAAATCGCTCTTCTGTTAA+CGG | - | chr5.1:62216778-62216797 | None:intergenic | 40.0% | |
| CTCTTAGCTTAGACTCTGTT+TGG | + | chr5.1:62218344-62218363 | MS.gene32552:intron | 40.0% | |
| CTTACAGATCTTGGACATCT+AGG | - | chr5.1:62216542-62216561 | None:intergenic | 40.0% | |
| GAAAATGGGTCAGTTATTCC+GGG | + | chr5.1:62218656-62218675 | MS.gene32552:intron | 40.0% | |
| GAAATCCCTGAATCTATGGA+GGG | - | chr5.1:62219069-62219088 | None:intergenic | 40.0% | |
| GAACTACTTGCATCTTTAGC+CGG | + | chr5.1:62216697-62216716 | MS.gene32552:CDS | 40.0% | |
| GACAAATCATCAATGCCAGT+AGG | - | chr5.1:62217829-62217848 | None:intergenic | 40.0% | |
| GATTGTGAACATTCTCGCTA+TGG | + | chr5.1:62217273-62217292 | MS.gene32552:CDS | 40.0% | |
| GCAAAATAATTAGGAAGCGG+TGG | + | chr5.1:62217208-62217227 | MS.gene32552:CDS | 40.0% | |
| GCAATAAACTAAGTGGCTTG+TGG | + | chr5.1:62218927-62218946 | MS.gene32552:intron | 40.0% | |
| GCCAAGGGGTCAAATAAATT+GGG | - | chr5.1:62218472-62218491 | None:intergenic | 40.0% | |
| GGAAACAATTCCCCACAAAA+TGG | - | chr5.1:62217057-62217076 | None:intergenic | 40.0% | |
| GTAATTGGAGGAAATAACCG+TGG | + | chr5.1:62217713-62217732 | MS.gene32552:CDS | 40.0% | |
| GTCAAATAAATTGGGACGGA+GGG | - | chr5.1:62218464-62218483 | None:intergenic | 40.0% | |
| GTGATGACTATAATAGGAGG+TGG | + | chr5.1:62218110-62218129 | MS.gene32552:CDS | 40.0% | |
| GTTGGAACTGGAAGGTAATA+TGG | + | chr5.1:62219360-62219379 | MS.gene32552:intron | 40.0% | |
| TACAACGTATAGCTAATGGC+CGG | - | chr5.1:62220064-62220083 | None:intergenic | 40.0% | |
| TCCCAATTTATTTGACCCCT+TGG | + | chr5.1:62218468-62218487 | MS.gene32552:intron | 40.0% | |
| TCCCCTAAGAAAGTAATTGG+AGG | + | chr5.1:62217701-62217720 | MS.gene32552:CDS | 40.0% | |
| TCCTCCTTGCTTACAAATAC+TGG | + | chr5.1:62219105-62219124 | MS.gene32552:CDS | 40.0% | |
| TCCTTGCTTACAAATACTGG+CGG | + | chr5.1:62219108-62219127 | MS.gene32552:CDS | 40.0% | |
| TGAACATTCTCGCTATGGTA+AGG | + | chr5.1:62217278-62217297 | MS.gene32552:intron | 40.0% | |
| TGAAGCAACAGTTGCAGTTT+CGG | - | chr5.1:62217914-62217933 | None:intergenic | 40.0% | |
| TGCAAAAGTTCGCGTTTCTA+AGG | + | chr5.1:62217742-62217761 | MS.gene32552:CDS | 40.0% | |
| TTCCAATTCCAAACACTGGA+AGG | + | chr5.1:62217233-62217252 | MS.gene32552:CDS | 40.0% | |
| TTGGACATCTAGGTACCTTA+GGG | - | chr5.1:62216532-62216551 | None:intergenic | 40.0% | |
| TTGGATTTGTCTAGGTCTCT+AGG | + | chr5.1:62219039-62219058 | MS.gene32552:intron | 40.0% | |
| ! | AACCTTCCAGTGTTTGGAAT+TGG | - | chr5.1:62217238-62217257 | None:intergenic | 40.0% |
| ! | AATATCAGACTCGGTACTTG+CGG | + | chr5.1:62220012-62220031 | MS.gene32552:intron | 40.0% |
| ! | ATCAGCTTCACCGTCTTTTT+AGG | + | chr5.1:62219385-62219404 | MS.gene32552:intron | 40.0% |
| ! | ATGGTGTTGAAGAAGAGACT+TGG | + | chr5.1:62216482-62216501 | MS.gene32552:CDS | 40.0% |
| ! | CGCGTTTCTAAGGATTCTAA+TGG | + | chr5.1:62217752-62217771 | MS.gene32552:CDS | 40.0% |
| ! | GCATGTTGGTGTTCTTGTTA+AGG | + | chr5.1:62218136-62218155 | MS.gene32552:CDS | 40.0% |
| ! | GTAGTTCAAAAGCACAAGAG+TGG | - | chr5.1:62216684-62216703 | None:intergenic | 40.0% |
| ! | TGGTTTGTGTGCAGGATAAA+TGG | + | chr5.1:62220121-62220140 | MS.gene32552:intron | 40.0% |
| ! | TTCCCAATGCTTCCTTTTCA+AGG | + | chr5.1:62217073-62217092 | MS.gene32552:CDS | 40.0% |
| !! | AACTAAGTGGCTTGTGGTTT+TGG | + | chr5.1:62218933-62218952 | MS.gene32552:intron | 40.0% |
| !! | AGAAACATCTTGAGAGTGCT+GGG | + | chr5.1:62216827-62216846 | MS.gene32552:CDS | 40.0% |
| !! | AGAGACTTGGTAATGGATTC+AGG | + | chr5.1:62216495-62216514 | MS.gene32552:CDS | 40.0% |
| !! | GAGACTTGGTAATGGATTCA+GGG | + | chr5.1:62216496-62216515 | MS.gene32552:CDS | 40.0% |
| !! | TAATGGATTCAGGGACTATC+AGG | + | chr5.1:62216505-62216524 | MS.gene32552:CDS | 40.0% |
| !! | TCTTTTTAGGCAGCGAAAGT+GGG | + | chr5.1:62219398-62219417 | MS.gene32552:intron | 40.0% |
| !! | TTTTGGCTGCACATGCTTAT+TGG | + | chr5.1:62220223-62220242 | MS.gene32552:CDS | 40.0% |
| !!! | GTTTTGAGAATGCAGACCAT+AGG | + | chr5.1:62219471-62219490 | MS.gene32552:CDS | 40.0% |
| !!! | TGAACTTTTGGTTTGTGTGC+AGG | + | chr5.1:62220113-62220132 | MS.gene32552:intron | 40.0% |
| AACAGAACTCTTCGTCAGAC+TGG | + | chr5.1:62218179-62218198 | MS.gene32552:CDS | 45.0% | |
| AACGGTAAGAACAGGACTTG+CGG | - | chr5.1:62217402-62217421 | None:intergenic | 45.0% | |
| AATGCCTCAGTACTATGAGC+TGG | - | chr5.1:62219228-62219247 | None:intergenic | 45.0% | |
| ACCGCCAGTATTTGTAAGCA+AGG | - | chr5.1:62219112-62219131 | None:intergenic | 45.0% | |
| AGAAAAGCTGTCTTGGTGAG+AGG | - | chr5.1:62217425-62217444 | None:intergenic | 45.0% | |
| AGACACAGAAAATGGTCTCC+TGG | - | chr5.1:62219307-62219326 | None:intergenic | 45.0% | |
| AGCACTTGTTCATGCAGTTG+AGG | + | chr5.1:62219335-62219354 | MS.gene32552:CDS | 45.0% | |
| AGGGATTTCTGTTGCCAAAC+AGG | + | chr5.1:62219080-62219099 | MS.gene32552:CDS | 45.0% | |
| AGGTCTAAAAGCCTTCGGTT+TGG | - | chr5.1:62217172-62217191 | None:intergenic | 45.0% | |
| AGTCTTCCTCTTATGACTCG+AGG | - | chr5.1:62217567-62217586 | None:intergenic | 45.0% | |
| AGTGTCACACTCTGTTGAAG+AGG | + | chr5.1:62217609-62217628 | MS.gene32552:CDS | 45.0% | |
| AGTTTCGCATCGAGTCATTC+AGG | + | chr5.1:62217863-62217882 | MS.gene32552:CDS | 45.0% | |
| ATAGAGGACAGTTATGGAGG+CGG | + | chr5.1:62218088-62218107 | MS.gene32552:intron | 45.0% | |
| ATCAGATGCATTGCTAGAGG+TGG | - | chr5.1:62216749-62216768 | None:intergenic | 45.0% | |
| ATCTCTCCTCAACAAAGGAG+AGG | + | chr5.1:62220168-62220187 | MS.gene32552:CDS | 45.0% | |
| CAAAGTTTGCACCAAACCGA+AGG | + | chr5.1:62217158-62217177 | MS.gene32552:CDS | 45.0% | |
| CACAAGTGGTTGGACAACAT+TGG | - | chr5.1:62220286-62220305 | None:intergenic | 45.0% | |
| CCTTCTTTAGCCAACTTGAG+CGG | + | chr5.1:62217018-62217037 | MS.gene32552:CDS | 45.0% | |
| CGTGAAGGTCTAAAAGCCTT+CGG | - | chr5.1:62217177-62217196 | None:intergenic | 45.0% | |
| CTTGGACATCTAGGTACCTT+AGG | - | chr5.1:62216533-62216552 | None:intergenic | 45.0% | |
| GAACTCCCTCCATAGATTCA+GGG | + | chr5.1:62219061-62219080 | MS.gene32552:CDS | 45.0% | |
| GAAGCAACAGTTGCAGTTTC+GGG | - | chr5.1:62217913-62217932 | None:intergenic | 45.0% | |
| GAGGCGGTGATGACTATAAT+AGG | + | chr5.1:62218104-62218123 | MS.gene32552:CDS | 45.0% | |
| GCCAGTATTTGTAAGCAAGG+AGG | - | chr5.1:62219109-62219128 | None:intergenic | 45.0% | |
| GCGAAACTTTACTGTACGCA+AGG | - | chr5.1:62217851-62217870 | None:intergenic | 45.0% | |
| GCGGTGATGACTATAATAGG+AGG | + | chr5.1:62218107-62218126 | MS.gene32552:CDS | 45.0% | |
| GGACTTCCAATTCCAAACAC+TGG | + | chr5.1:62217229-62217248 | MS.gene32552:CDS | 45.0% | |
| GGGAGGAATGCTAGTAAGTT+AGG | + | chr5.1:62217099-62217118 | MS.gene32552:CDS | 45.0% | |
| GGGATTTCTGTTGCCAAACA+GGG | + | chr5.1:62219081-62219100 | MS.gene32552:CDS | 45.0% | |
| GGTCAAATAAATTGGGACGG+AGG | - | chr5.1:62218465-62218484 | None:intergenic | 45.0% | |
| GGTGCAAAGAAAAGCTGTCT+TGG | - | chr5.1:62217432-62217451 | None:intergenic | 45.0% | |
| GTCTTCCTCTTATGACTCGA+GGG | - | chr5.1:62217566-62217585 | None:intergenic | 45.0% | |
| GTTCATGCAGTTGAGGAAGT+TGG | + | chr5.1:62219342-62219361 | MS.gene32552:CDS | 45.0% | |
| TCCTCAGGAGCTATTGGATA+GGG | + | chr5.1:62220200-62220219 | MS.gene32552:CDS | 45.0% | |
| TCTGTGTGAAATGAGCCAAG+GGG | - | chr5.1:62218486-62218505 | None:intergenic | 45.0% | |
| TGAGATGCTACATGGTGAGA+AGG | - | chr5.1:62218293-62218312 | None:intergenic | 45.0% | |
| TGGTCCAGTGTTCTGATTCA+CGG | - | chr5.1:62219262-62219281 | None:intergenic | 45.0% | |
| TGTTCCAGCTCATAGTACTG+AGG | + | chr5.1:62219221-62219240 | MS.gene32552:CDS | 45.0% | |
| TTCAAGAAACCAGTCGAGGA+TGG | + | chr5.1:62216658-62216677 | MS.gene32552:CDS | 45.0% | |
| TTCCTCAGGAGCTATTGGAT+AGG | + | chr5.1:62220199-62220218 | MS.gene32552:CDS | 45.0% | |
| TTGAGGAAGTTGGAACTGGA+AGG | + | chr5.1:62219352-62219371 | MS.gene32552:CDS | 45.0% | |
| TTGATGCTTGACATGCTGCT+TGG | - | chr5.1:62220262-62220281 | None:intergenic | 45.0% | |
| TTGCGTGCAATGTATCGTGA+AGG | - | chr5.1:62217192-62217211 | None:intergenic | 45.0% | |
| ! | CAAGGGAAGAAGCTGATTCA+TGG | - | chr5.1:62219152-62219171 | None:intergenic | 45.0% |
| ! | GAACTTTTGCAGATGAGCCA+CGG | - | chr5.1:62217733-62217752 | None:intergenic | 45.0% |
| ! | GAGAAACATCTTGAGAGTGC+TGG | + | chr5.1:62216826-62216845 | MS.gene32552:CDS | 45.0% |
| ! | GGAGCTATTGGATAGGGTTT+TGG | + | chr5.1:62220206-62220225 | MS.gene32552:CDS | 45.0% |
| !! | CTTCCTTTTCAAGGAATGGG+AGG | + | chr5.1:62217082-62217101 | MS.gene32552:CDS | 45.0% |
| !! | GTCTTTTTAGGCAGCGAAAG+TGG | + | chr5.1:62219397-62219416 | MS.gene32552:intron | 45.0% |
| AAGCAAGGAGGAACCCTGTT+TGG | - | chr5.1:62219097-62219116 | None:intergenic | 50.0% | |
| ACCCTATCCAATAGCTCCTG+AGG | - | chr5.1:62220204-62220223 | None:intergenic | 50.0% | |
| ACTCTCCTTCAGCAACTCAC+CGG | - | chr5.1:62216719-62216738 | None:intergenic | 50.0% | |
| AGCTGTCTTGGTGAGAGGAA+CGG | - | chr5.1:62217420-62217439 | None:intergenic | 50.0% | |
| AGGGGTTCGATGCTAACTCA+TGG | + | chr5.1:62217647-62217666 | MS.gene32552:CDS | 50.0% | |
| ATAGGAGGTGGAGTGCATGT+TGG | + | chr5.1:62218122-62218141 | MS.gene32552:CDS | 50.0% | |
| ATGGGTCAGTTATTCCGGGA+CGG | + | chr5.1:62218660-62218679 | MS.gene32552:intron | 50.0% | |
| ATGTAGCATCTCAGCCTACC+AGG | + | chr5.1:62218300-62218319 | MS.gene32552:CDS | 50.0% | |
| CTGTTCAACTTTCGCTCACC+TGG | - | chr5.1:62218321-62218340 | None:intergenic | 50.0% | |
| GCAGTTGAGGAAGTTGGAAC+TGG | + | chr5.1:62219348-62219367 | MS.gene32552:CDS | 50.0% | |
| GCTTCTCCAGTTGTTTGTGC+TGG | + | chr5.1:62218263-62218282 | MS.gene32552:CDS | 50.0% | |
| GGAACGTCGACGTAAAGTTC+TGG | - | chr5.1:62217892-62217911 | None:intergenic | 50.0% | |
| GGAACTCCCTCCATAGATTC+AGG | + | chr5.1:62219060-62219079 | MS.gene32552:CDS | 50.0% | |
| GGAGAAGCTTGAGAAGAGCT+AGG | - | chr5.1:62218251-62218270 | None:intergenic | 50.0% | |
| GGATCACCAGCACAAACAAC+TGG | - | chr5.1:62218272-62218291 | None:intergenic | 50.0% | |
| GGTCCAGTGTTCTGATTCAC+GGG | - | chr5.1:62219261-62219280 | None:intergenic | 50.0% | |
| GGTTCGATGCTAACTCATGG+TGG | + | chr5.1:62217650-62217669 | MS.gene32552:CDS | 50.0% | |
| GTGAGAGGAACGGTAAGAAC+AGG | - | chr5.1:62217410-62217429 | None:intergenic | 50.0% | |
| GTTCCCGTGAATCAGAACAC+TGG | + | chr5.1:62219255-62219274 | MS.gene32552:CDS | 50.0% | |
| TCAACTTTCGCTCACCTGGT+AGG | - | chr5.1:62218317-62218336 | None:intergenic | 50.0% | |
| TCCAATAGCTCCTGAGGAAC+TGG | - | chr5.1:62220198-62220217 | None:intergenic | 50.0% | |
| TCGATGCTAACTCATGGTGG+AGG | + | chr5.1:62217653-62217672 | MS.gene32552:CDS | 50.0% | |
| TGCGTTCAAGAAACCAGTCG+AGG | + | chr5.1:62216654-62216673 | MS.gene32552:CDS | 50.0% | |
| TGGAACAGAAACTAGCGCTC+CGG | - | chr5.1:62219208-62219227 | None:intergenic | 50.0% | |
| TGGAGCAACCTTCCAGTGTT+TGG | - | chr5.1:62217244-62217263 | None:intergenic | 50.0% | |
| TGGTAGGCTGAGATGCTACA+TGG | - | chr5.1:62218301-62218320 | None:intergenic | 50.0% | |
| TTTAGCCGGTGAGTTGCTGA+AGG | + | chr5.1:62216711-62216730 | MS.gene32552:CDS | 50.0% | |
| ! | GCTTGACATGCTGCTTGGAT+TGG | - | chr5.1:62220257-62220276 | None:intergenic | 50.0% |
| ! | TGACATGCTGCTTGGATTGG+TGG | - | chr5.1:62220254-62220273 | None:intergenic | 50.0% |
| !! | CCGCTCAAGTTGGCTAAAGA+AGG | - | chr5.1:62217021-62217040 | None:intergenic | 50.0% |
| AACACTTACTCCCTCCGTCC+CGG | - | chr5.1:62218677-62218696 | None:intergenic | 55.0% | |
| ATAGCTAATGGCCGGTGTGC+AGG | - | chr5.1:62220056-62220075 | None:intergenic | 55.0% | |
| CAGGGACTATCAGGTCCCTA+AGG | + | chr5.1:62216514-62216533 | MS.gene32552:CDS | 55.0% | |
| CATCACGAGGCTGACAGTTC+AGG | + | chr5.1:62216967-62216986 | MS.gene32552:CDS | 55.0% | |
| CATTCACACACCCTGCACAC+CGG | + | chr5.1:62220042-62220061 | MS.gene32552:intron | 55.0% | |
| CTGAACTGTCAGCCTCGTGA+TGG | - | chr5.1:62216969-62216988 | None:intergenic | 55.0% | |
| GCCAGTTCCTCAGGAGCTAT+TGG | + | chr5.1:62220194-62220213 | MS.gene32552:CDS | 55.0% | |
| GGCTGTCCTCTCCTTTGTTG+AGG | - | chr5.1:62220177-62220196 | None:intergenic | 55.0% | |
| GGTTCGACGCTGTACAAGCT+CGG | - | chr5.1:62219286-62219305 | None:intergenic | 55.0% | |
| GTCAGTTATTCCGGGACGGA+GGG | + | chr5.1:62218664-62218683 | MS.gene32552:intron | 55.0% | |
| TAGCTAATGGCCGGTGTGCA+GGG | - | chr5.1:62220055-62220074 | None:intergenic | 55.0% | |
| TGCGACCCTCGAGTCATAAG+AGG | + | chr5.1:62217558-62217577 | MS.gene32552:CDS | 55.0% | |
| ! | AGCTTGTACAGCGTCGAACC+AGG | + | chr5.1:62219286-62219305 | MS.gene32552:CDS | 55.0% |
| CAAGAGTGGCCATCCTCGAC+TGG | - | chr5.1:62216670-62216689 | None:intergenic | 60.0% | |
| CGACGCTGTACAAGCTCGGA+TGG | - | chr5.1:62219282-62219301 | None:intergenic | 60.0% | |
| GAGAGGACAGCCAGTTCCTC+AGG | + | chr5.1:62220185-62220204 | MS.gene32552:CDS | 60.0% | |
| GGTCAGTTATTCCGGGACGG+AGG | + | chr5.1:62218663-62218682 | MS.gene32552:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 62216482 | 62220314 | 62216482 | ID=MS.gene32552 |
| chr5.1 | mRNA | 62216482 | 62220314 | 62216482 | ID=MS.gene32552.t1;Parent=MS.gene32552 |
| chr5.1 | exon | 62216482 | 62216562 | 62216482 | ID=MS.gene32552.t1.exon1;Parent=MS.gene32552.t1 |
| chr5.1 | CDS | 62216482 | 62216562 | 62216482 | ID=cds.MS.gene32552.t1;Parent=MS.gene32552.t1 |
| chr5.1 | exon | 62216646 | 62217294 | 62216646 | ID=MS.gene32552.t1.exon2;Parent=MS.gene32552.t1 |
| chr5.1 | CDS | 62216646 | 62217294 | 62216646 | ID=cds.MS.gene32552.t1;Parent=MS.gene32552.t1 |
| chr5.1 | exon | 62217549 | 62217773 | 62217549 | ID=MS.gene32552.t1.exon3;Parent=MS.gene32552.t1 |
| chr5.1 | CDS | 62217549 | 62217773 | 62217549 | ID=cds.MS.gene32552.t1;Parent=MS.gene32552.t1 |
| chr5.1 | exon | 62217860 | 62217939 | 62217860 | ID=MS.gene32552.t1.exon4;Parent=MS.gene32552.t1 |
| chr5.1 | CDS | 62217860 | 62217939 | 62217860 | ID=cds.MS.gene32552.t1;Parent=MS.gene32552.t1 |
| chr5.1 | exon | 62218092 | 62218321 | 62218092 | ID=MS.gene32552.t1.exon5;Parent=MS.gene32552.t1 |
| chr5.1 | CDS | 62218092 | 62218321 | 62218092 | ID=cds.MS.gene32552.t1;Parent=MS.gene32552.t1 |
| chr5.1 | exon | 62219053 | 62219373 | 62219053 | ID=MS.gene32552.t1.exon6;Parent=MS.gene32552.t1 |
| chr5.1 | CDS | 62219053 | 62219373 | 62219053 | ID=cds.MS.gene32552.t1;Parent=MS.gene32552.t1 |
| chr5.1 | exon | 62219448 | 62219511 | 62219448 | ID=MS.gene32552.t1.exon7;Parent=MS.gene32552.t1 |
| chr5.1 | CDS | 62219448 | 62219511 | 62219448 | ID=cds.MS.gene32552.t1;Parent=MS.gene32552.t1 |
| chr5.1 | exon | 62220135 | 62220314 | 62220135 | ID=MS.gene32552.t1.exon8;Parent=MS.gene32552.t1 |
| chr5.1 | CDS | 62220135 | 62220314 | 62220135 | ID=cds.MS.gene32552.t1;Parent=MS.gene32552.t1 |
| Gene Sequence |
| Protein sequence |
