Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32681.t1 | XP_003603315.1 | 96.9 | 226 | 5 | 2 | 21 | 245 | 122 | 346 | 1.40E-108 | 402.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32681.t1 | G7J9W6 | 96.9 | 226 | 5 | 2 | 21 | 245 | 122 | 346 | 1.0e-108 | 402.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04915 | MS.gene32681 | 0.817676 | 2.91E-52 | -1.69E-46 |
| MS.gene04917 | MS.gene32681 | 0.821319 | 4.30E-53 | -1.69E-46 |
| MS.gene04998 | MS.gene32681 | 0.823113 | 1.65E-53 | -1.69E-46 |
| MS.gene050414 | MS.gene32681 | 0.801633 | 8.21E-49 | -1.69E-46 |
| MS.gene051852 | MS.gene32681 | 0.818099 | 2.34E-52 | -1.69E-46 |
| MS.gene052016 | MS.gene32681 | 0.857758 | 1.31E-62 | -1.69E-46 |
| MS.gene052463 | MS.gene32681 | 0.813129 | 2.99E-51 | -1.69E-46 |
| MS.gene052493 | MS.gene32681 | 0.814536 | 1.47E-51 | -1.69E-46 |
| MS.gene054178 | MS.gene32681 | 0.821687 | 3.54E-53 | -1.69E-46 |
| MS.gene054617 | MS.gene32681 | 0.834374 | 3.11E-56 | -1.69E-46 |
| MS.gene054892 | MS.gene32681 | 0.811713 | 6.10E-51 | -1.69E-46 |
| MS.gene054893 | MS.gene32681 | 0.809928 | 1.48E-50 | -1.69E-46 |
| MS.gene055469 | MS.gene32681 | 0.812101 | 5.02E-51 | -1.69E-46 |
| MS.gene055864 | MS.gene32681 | 0.811166 | 8.02E-51 | -1.69E-46 |
| MS.gene056285 | MS.gene32681 | 0.833718 | 4.54E-56 | -1.69E-46 |
| MS.gene058429 | MS.gene32681 | 0.812393 | 4.34E-51 | -1.69E-46 |
| MS.gene058720 | MS.gene32681 | 0.85259 | 4.18E-61 | -1.69E-46 |
| MS.gene058758 | MS.gene32681 | 0.809986 | 1.44E-50 | -1.69E-46 |
| MS.gene059170 | MS.gene32681 | 0.835329 | 1.79E-56 | -1.69E-46 |
| MS.gene060259 | MS.gene32681 | 0.820526 | 6.55E-53 | -1.69E-46 |
| MS.gene06052 | MS.gene32681 | 0.811805 | 5.83E-51 | -1.69E-46 |
| MS.gene060697 | MS.gene32681 | 0.802758 | 4.82E-49 | -1.69E-46 |
| MS.gene060932 | MS.gene32681 | 0.83628 | 1.03E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32681.t1 | MTR_3g106250 | 98.230 | 226 | 2 | 2 | 21 | 245 | 122 | 346 | 1.56e-160 | 448 |
| MS.gene32681.t1 | MTR_1g013100 | 45.267 | 243 | 93 | 7 | 21 | 245 | 106 | 326 | 2.90e-53 | 175 |
| MS.gene32681.t1 | MTR_7g114790 | 33.333 | 234 | 106 | 7 | 21 | 244 | 111 | 304 | 1.08e-33 | 124 |
| MS.gene32681.t1 | MTR_1g081260 | 42.208 | 154 | 81 | 4 | 21 | 168 | 114 | 265 | 2.98e-33 | 122 |
| MS.gene32681.t1 | MTR_7g095100 | 32.627 | 236 | 103 | 8 | 21 | 244 | 114 | 305 | 4.25e-32 | 119 |
| MS.gene32681.t1 | MTR_5g069570 | 38.750 | 160 | 92 | 3 | 21 | 175 | 120 | 278 | 3.39e-31 | 117 |
| MS.gene32681.t1 | MTR_4g104760 | 40.127 | 157 | 74 | 5 | 18 | 158 | 114 | 266 | 1.03e-29 | 113 |
| MS.gene32681.t1 | MTR_3g082430 | 38.854 | 157 | 88 | 3 | 19 | 168 | 102 | 257 | 2.17e-29 | 112 |
| MS.gene32681.t1 | MTR_5g096570 | 40.845 | 142 | 79 | 2 | 21 | 158 | 1276 | 1416 | 4.84e-27 | 109 |
| MS.gene32681.t1 | MTR_7g103900 | 35.099 | 151 | 88 | 4 | 18 | 158 | 123 | 273 | 8.81e-26 | 102 |
| MS.gene32681.t1 | MTR_3g076610 | 34.969 | 163 | 76 | 4 | 22 | 158 | 116 | 274 | 3.48e-25 | 101 |
| MS.gene32681.t1 | MTR_4g055230 | 32.759 | 174 | 89 | 7 | 21 | 174 | 126 | 291 | 3.00e-24 | 98.6 |
| MS.gene32681.t1 | MTR_2g084965 | 36.552 | 145 | 82 | 5 | 22 | 158 | 132 | 274 | 8.40e-22 | 92.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32681.t1 | AT5G11000 | 57.927 | 164 | 62 | 2 | 18 | 174 | 125 | 288 | 5.46e-57 | 186 |
| MS.gene32681.t1 | AT2G25200 | 38.889 | 234 | 114 | 8 | 21 | 245 | 141 | 354 | 6.40e-33 | 122 |
| MS.gene32681.t1 | AT4G12690 | 40.789 | 152 | 86 | 2 | 21 | 169 | 110 | 260 | 1.21e-32 | 120 |
| MS.gene32681.t1 | AT4G12690 | 40.789 | 152 | 86 | 2 | 21 | 169 | 110 | 260 | 1.21e-32 | 120 |
| MS.gene32681.t1 | AT2G04220 | 40.667 | 150 | 84 | 2 | 21 | 166 | 114 | 262 | 4.80e-32 | 119 |
| MS.gene32681.t1 | AT3G04860 | 30.702 | 228 | 101 | 5 | 21 | 244 | 113 | 287 | 1.92e-31 | 117 |
| MS.gene32681.t1 | AT5G28150 | 39.716 | 141 | 81 | 3 | 21 | 158 | 113 | 252 | 1.51e-30 | 115 |
| MS.gene32681.t1 | AT5G48270 | 34.641 | 153 | 96 | 2 | 10 | 158 | 117 | 269 | 2.51e-27 | 107 |
| MS.gene32681.t1 | AT2G27770 | 36.667 | 150 | 83 | 4 | 21 | 158 | 135 | 284 | 1.08e-25 | 102 |
| MS.gene32681.t1 | AT3G13229 | 38.095 | 147 | 83 | 4 | 19 | 158 | 92 | 237 | 1.88e-25 | 101 |
Find 58 sgRNAs with CRISPR-Local
Find 102 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTTATGAGTTAGGGAAAA+TGG | 0.148677 | 3.1:-84330948 | MS.gene32681:CDS |
| GGCGCAACAGAATTTGAATT+TGG | 0.231211 | 3.1:-84330972 | MS.gene32681:CDS |
| GCTTCTTCTGGTGGATCTTT+TGG | 0.246906 | 3.1:-84330893 | MS.gene32681:CDS |
| TGGCGCAAGTTCTTCTGTTT+TGG | 0.250517 | 3.1:-84330873 | MS.gene32681:CDS |
| TCTCATGGGATGTTTATAAT+TGG | 0.252772 | 3.1:-84331108 | MS.gene32681:CDS |
| AATTTGGGTGTTTATGAGTT+AGG | 0.282260 | 3.1:-84330956 | MS.gene32681:CDS |
| ATTCTTGTGTTCTTTACATT+TGG | 0.286420 | 3.1:+84331357 | None:intergenic |
| GTCGTCTTCGTCGGTTTCAA+TGG | 0.333982 | 3.1:-84330915 | MS.gene32681:CDS |
| TTTCTTTGCTTGTTTATGCT+TGG | 0.342405 | 3.1:-84330805 | MS.gene32681:CDS |
| TCGGTTTCAATGGCTTCTTC+TGG | 0.346131 | 3.1:-84330905 | MS.gene32681:CDS |
| GAAGAGTTTGACGAATTTGT+TGG | 0.356182 | 3.1:-84330993 | MS.gene32681:CDS |
| AGGCTCTGTTTCAGTGTAGA+TGG | 0.358342 | 3.1:-84331214 | MS.gene32681:CDS |
| TCAGGACCTGAACCAGATTC+CGG | 0.382786 | 3.1:-84331457 | MS.gene32681:intron |
| AGATTGAAATGGAAGTTTAG+AGG | 0.395642 | 3.1:-84331169 | MS.gene32681:CDS |
| GCGCAACAGAATTTGAATTT+GGG | 0.399492 | 3.1:-84330971 | MS.gene32681:CDS |
| GCGAAGTAGAAACCGGAATC+TGG | 0.412140 | 3.1:+84331445 | None:intergenic |
| GTGGTGGAAGAGATCATTCC+AGG | 0.414862 | 3.1:-84331234 | MS.gene32681:CDS |
| ATTTGGGTGTTTATGAGTTA+GGG | 0.416856 | 3.1:-84330955 | MS.gene32681:CDS |
| GTTTATGAGTTAGGGAAAAT+GGG | 0.419124 | 3.1:-84330947 | MS.gene32681:CDS |
| ATGAATTGGTTGTTCCTGTT+GGG | 0.435531 | 3.1:-84330829 | MS.gene32681:CDS |
| TGATAACGAGATGACCCTTT+TGG | 0.440851 | 3.1:-84331413 | MS.gene32681:CDS |
| TAGAAACCGGAATCTGGTTC+AGG | 0.447124 | 3.1:+84331451 | None:intergenic |
| GACGGAAACAAGAAGGAAAA+GGG | 0.456534 | 3.1:+84331812 | None:intergenic |
| GATTGAAATGGAAGTTTAGA+GGG | 0.459604 | 3.1:-84331168 | MS.gene32681:CDS |
| TACAACACGAGAGCGAGATT+TGG | 0.461614 | 3.1:-84331286 | MS.gene32681:CDS |
| TAAGAGTTGGTCGTCTTCGT+CGG | 0.462413 | 3.1:-84330924 | MS.gene32681:CDS |
| TGTTTGAATCTCCAACCAAA+AGG | 0.465336 | 3.1:+84331398 | None:intergenic |
| GTTTCAATGGCTTCTTCTGG+TGG | 0.473192 | 3.1:-84330902 | MS.gene32681:CDS |
| AATGAGAGAGTTGAAATTGA+TGG | 0.474861 | 3.1:-84331145 | MS.gene32681:CDS |
| AATGAATTGGTTGTTCCTGT+TGG | 0.475517 | 3.1:-84330830 | MS.gene32681:CDS |
| GGACGGAAACAAGAAGGAAA+AGG | 0.479393 | 3.1:+84331811 | None:intergenic |
| TGCAGATTAAGAGATTGAAA+TGG | 0.481189 | 3.1:-84331180 | MS.gene32681:CDS |
| GTGTACCTGTTCAGATCTCA+TGG | 0.482867 | 3.1:-84331123 | MS.gene32681:CDS |
| TAGTGTTGAGGAGAATGAAT+TGG | 0.486282 | 3.1:-84330843 | MS.gene32681:CDS |
| TGACGGTTGTCGTCGGTTGT+TGG | 0.486808 | 3.1:+84331784 | None:intergenic |
| ATCTACACTGAAACAGAGCC+TGG | 0.491102 | 3.1:+84331216 | None:intergenic |
| ACATCCCATGAGATCTGAAC+AGG | 0.494374 | 3.1:+84331118 | None:intergenic |
| ACAAGCAAAGAAAACCCAAC+AGG | 0.504820 | 3.1:+84330815 | None:intergenic |
| AACAACCGCGAAGTAGAAAC+CGG | 0.505210 | 3.1:+84331438 | None:intergenic |
| AACACGAGAGCGAGATTTGG+TGG | 0.511269 | 3.1:-84331283 | MS.gene32681:CDS |
| GTTTGAATCTCCAACCAAAA+GGG | 0.512706 | 3.1:+84331399 | None:intergenic |
| AGAGAGATTCAGATAGATTG+TGG | 0.525407 | 3.1:-84331253 | MS.gene32681:CDS |
| TTGTCGTCGGTTGTTGGAGA+GGG | 0.527307 | 3.1:+84331790 | None:intergenic |
| GAGATTCAGATAGATTGTGG+TGG | 0.561448 | 3.1:-84331250 | MS.gene32681:CDS |
| TAGGGAAAATGGGTAAGAGT+TGG | 0.575570 | 3.1:-84330937 | MS.gene32681:CDS |
| GTTGTCGTCGGTTGTTGGAG+AGG | 0.577727 | 3.1:+84331789 | None:intergenic |
| TTTGGAATGGTCTAGTGTTG+AGG | 0.588570 | 3.1:-84330855 | MS.gene32681:CDS |
| AGATTCCGGTTTCTACTTCG+CGG | 0.589210 | 3.1:-84331443 | MS.gene32681:CDS |
| CGTCGGTTGTTGGAGAGGGA+CGG | 0.604472 | 3.1:+84331794 | None:intergenic |
| GGAGAGGGACGGAAACAAGA+AGG | 0.612496 | 3.1:+84331805 | None:intergenic |
| TGGTGAATGACGGTTGTCGT+CGG | 0.618426 | 3.1:+84331777 | None:intergenic |
| TTGTGAAAGATAACAGTGAT+GGG | 0.630344 | 3.1:-84331081 | MS.gene32681:CDS |
| TTTGTGAAAGATAACAGTGA+TGG | 0.632305 | 3.1:-84331082 | MS.gene32681:CDS |
| ACACGAGAGCGAGATTTGGT+GGG | 0.635309 | 3.1:-84331282 | MS.gene32681:CDS |
| ACGGAAACAAGAAGGAAAAG+GGG | 0.654061 | 3.1:+84331813 | None:intergenic |
| TGTACCTGTTCAGATCTCAT+GGG | 0.704348 | 3.1:-84331122 | MS.gene32681:CDS |
| GAAGATGAAGATGAACAACA+AGG | 0.707918 | 3.1:-84331025 | MS.gene32681:CDS |
| GATGAAGATGAACAACAAGG+AGG | 0.746013 | 3.1:-84331022 | MS.gene32681:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AGAAAATGAAAGGTTTGATA+TGG | + | chr3.1:84331068-84331087 | None:intergenic | 25.0% |
| ! | ATTCTTGTGTTCTTTACATT+TGG | + | chr3.1:84331265-84331284 | None:intergenic | 25.0% |
| !! | ACACAAGAATTTTCAGTATT+TGG | - | chr3.1:84331275-84331294 | MS.gene32681:CDS | 25.0% |
| !! | ATATCAAACCTTTCATTTTC+TGG | - | chr3.1:84331067-84331086 | MS.gene32681:CDS | 25.0% |
| !!! | TGTTTTTTCCAGAAAATGAA+AGG | + | chr3.1:84331078-84331097 | None:intergenic | 25.0% |
| !!! | TTCATTTTCTGGAAAAAACA+CGG | - | chr3.1:84331078-84331097 | MS.gene32681:CDS | 25.0% |
| AATGAGAGAGTTGAAATTGA+TGG | - | chr3.1:84331474-84331493 | MS.gene32681:intron | 30.0% | |
| AATTTGGGTGTTTATGAGTT+AGG | - | chr3.1:84331663-84331682 | MS.gene32681:intron | 30.0% | |
| AGATTGAAATGGAAGTTTAG+AGG | - | chr3.1:84331450-84331469 | MS.gene32681:CDS | 30.0% | |
| ATTTGGGTGTTTATGAGTTA+GGG | - | chr3.1:84331664-84331683 | MS.gene32681:intron | 30.0% | |
| CTTCAAATATACACTTGTTC+TGG | - | chr3.1:84331115-84331134 | MS.gene32681:CDS | 30.0% | |
| GATTGAAATGGAAGTTTAGA+GGG | - | chr3.1:84331451-84331470 | MS.gene32681:CDS | 30.0% | |
| GTTTATGAGTTAGGGAAAAT+GGG | - | chr3.1:84331672-84331691 | MS.gene32681:intron | 30.0% | |
| TCTCATGGGATGTTTATAAT+TGG | - | chr3.1:84331511-84331530 | MS.gene32681:intron | 30.0% | |
| TGCAGATTAAGAGATTGAAA+TGG | - | chr3.1:84331439-84331458 | MS.gene32681:CDS | 30.0% | |
| TGTTTATGAGTTAGGGAAAA+TGG | - | chr3.1:84331671-84331690 | MS.gene32681:intron | 30.0% | |
| TTGTGAAAGATAACAGTGAT+GGG | - | chr3.1:84331538-84331557 | MS.gene32681:intron | 30.0% | |
| TTTCTTTGCTTGTTTATGCT+TGG | - | chr3.1:84331814-84331833 | MS.gene32681:CDS | 30.0% | |
| TTTGTGAAAGATAACAGTGA+TGG | - | chr3.1:84331537-84331556 | MS.gene32681:intron | 30.0% | |
| ! | TAGGTTTAGTTTCTTTGACT+TGG | - | chr3.1:84330932-84330951 | MS.gene32681:CDS | 30.0% |
| !! | AACCTCTCTAAAGCTAAATT+CGG | - | chr3.1:84331138-84331157 | MS.gene32681:CDS | 30.0% |
| AATGAATTGGTTGTTCCTGT+TGG | - | chr3.1:84331789-84331808 | MS.gene32681:CDS | 35.0% | |
| AGAAGAAGAAGAAGAAGGAT+TGG | + | chr3.1:84331025-84331044 | None:intergenic | 35.0% | |
| AGAGAGATTCAGATAGATTG+TGG | - | chr3.1:84331366-84331385 | MS.gene32681:CDS | 35.0% | |
| AGGTTTGATATGGAGATGAA+AGG | + | chr3.1:84331058-84331077 | None:intergenic | 35.0% | |
| ATGAATTGGTTGTTCCTGTT+GGG | - | chr3.1:84331790-84331809 | MS.gene32681:CDS | 35.0% | |
| CAAAGAAACTAAACCTACGT+TGG | + | chr3.1:84330929-84330948 | None:intergenic | 35.0% | |
| GAAGAGTTTGACGAATTTGT+TGG | - | chr3.1:84331626-84331645 | MS.gene32681:intron | 35.0% | |
| GAAGATGAAGATGAACAACA+AGG | - | chr3.1:84331594-84331613 | MS.gene32681:intron | 35.0% | |
| GATGAAGAAGAAGAAGAAGA+AGG | + | chr3.1:84331030-84331049 | None:intergenic | 35.0% | |
| GCGCAACAGAATTTGAATTT+GGG | - | chr3.1:84331648-84331667 | MS.gene32681:intron | 35.0% | |
| GTTTGAATCTCCAACCAAAA+GGG | + | chr3.1:84331223-84331242 | None:intergenic | 35.0% | |
| TATCTTTACCAAACCAACGT+AGG | - | chr3.1:84330913-84330932 | MS.gene32681:CDS | 35.0% | |
| TGTTTGAATCTCCAACCAAA+AGG | + | chr3.1:84331224-84331243 | None:intergenic | 35.0% | |
| TTTGATATGGAGATGAAAGG+AGG | + | chr3.1:84331055-84331074 | None:intergenic | 35.0% | |
| ! | AAACTAAACCTACGTTGGTT+TGG | + | chr3.1:84330924-84330943 | None:intergenic | 35.0% |
| ! | TAGTGTTGAGGAGAATGAAT+TGG | - | chr3.1:84331776-84331795 | MS.gene32681:intron | 35.0% |
| !! | ACCTCTCTAAAGCTAAATTC+GGG | - | chr3.1:84331139-84331158 | MS.gene32681:CDS | 35.0% |
| !! | TACGTTGGTTTGGTAAAGAT+AGG | + | chr3.1:84330914-84330933 | None:intergenic | 35.0% |
| !!! | CAAGTTCTTCTGTTTTGGAA+TGG | - | chr3.1:84331751-84331770 | MS.gene32681:intron | 35.0% |
| AAAGATAGGTGGTGAGGTTA+GGG | + | chr3.1:84330900-84330919 | None:intergenic | 40.0% | |
| ACAAGCAAAGAAAACCCAAC+AGG | + | chr3.1:84331807-84331826 | None:intergenic | 40.0% | |
| ACGGAAACAAGAAGGAAAAG+GGG | + | chr3.1:84330809-84330828 | None:intergenic | 40.0% | |
| GACGGAAACAAGAAGGAAAA+GGG | + | chr3.1:84330810-84330829 | None:intergenic | 40.0% | |
| GAGATTCAGATAGATTGTGG+TGG | - | chr3.1:84331369-84331388 | MS.gene32681:CDS | 40.0% | |
| GATGAAGATGAACAACAAGG+AGG | - | chr3.1:84331597-84331616 | MS.gene32681:intron | 40.0% | |
| GGCGCAACAGAATTTGAATT+TGG | - | chr3.1:84331647-84331666 | MS.gene32681:intron | 40.0% | |
| TAAAGATAGGTGGTGAGGTT+AGG | + | chr3.1:84330901-84330920 | None:intergenic | 40.0% | |
| TAGGGAAAATGGGTAAGAGT+TGG | - | chr3.1:84331682-84331701 | MS.gene32681:intron | 40.0% | |
| TGTACCTGTTCAGATCTCAT+GGG | - | chr3.1:84331497-84331516 | MS.gene32681:intron | 40.0% | |
| TTTGGTAAAGATAGGTGGTG+AGG | + | chr3.1:84330906-84330925 | None:intergenic | 40.0% | |
| ! | GAAGAAGAAGAAGGATTGGT+TGG | + | chr3.1:84331021-84331040 | None:intergenic | 40.0% |
| ! | TCTAAAGCTAAATTCGGGTC+AGG | - | chr3.1:84331144-84331163 | MS.gene32681:CDS | 40.0% |
| ! | TTTGGAATGGTCTAGTGTTG+AGG | - | chr3.1:84331764-84331783 | MS.gene32681:intron | 40.0% |
| !! | ACCCGAATTTAGCTTTAGAG+AGG | + | chr3.1:84331143-84331162 | None:intergenic | 40.0% |
| !! | GTTGGTTTGGTAAAGATAGG+TGG | + | chr3.1:84330911-84330930 | None:intergenic | 40.0% |
| !! | TGATAACGAGATGACCCTTT+TGG | - | chr3.1:84331206-84331225 | MS.gene32681:CDS | 40.0% |
| AACAACCGCGAAGTAGAAAC+CGG | + | chr3.1:84331184-84331203 | None:intergenic | 45.0% | |
| ACATCCCATGAGATCTGAAC+AGG | + | chr3.1:84331504-84331523 | None:intergenic | 45.0% | |
| ACTTGGTCACGTTCCATTCT+TGG | - | chr3.1:84330949-84330968 | MS.gene32681:CDS | 45.0% | |
| AGATTCCGGTTTCTACTTCG+CGG | - | chr3.1:84331176-84331195 | MS.gene32681:CDS | 45.0% | |
| AGGCTCTGTTTCAGTGTAGA+TGG | - | chr3.1:84331405-84331424 | MS.gene32681:CDS | 45.0% | |
| ATCTACACTGAAACAGAGCC+TGG | + | chr3.1:84331406-84331425 | None:intergenic | 45.0% | |
| GGACGGAAACAAGAAGGAAA+AGG | + | chr3.1:84330811-84330830 | None:intergenic | 45.0% | |
| GTGAAGAGAACGACCAAGAA+TGG | + | chr3.1:84330965-84330984 | None:intergenic | 45.0% | |
| GTGTACCTGTTCAGATCTCA+TGG | - | chr3.1:84331496-84331515 | MS.gene32681:intron | 45.0% | |
| GTTTCAATGGCTTCTTCTGG+TGG | - | chr3.1:84331717-84331736 | MS.gene32681:intron | 45.0% | |
| TACAACACGAGAGCGAGATT+TGG | - | chr3.1:84331333-84331352 | MS.gene32681:CDS | 45.0% | |
| TCGGTTTCAATGGCTTCTTC+TGG | - | chr3.1:84331714-84331733 | MS.gene32681:intron | 45.0% | |
| ! | AACGAGATGACCCTTTTGGT+TGG | - | chr3.1:84331210-84331229 | MS.gene32681:CDS | 45.0% |
| ! | ATGGGTGGTGATGAAGTTGA+AGG | + | chr3.1:84330987-84331006 | None:intergenic | 45.0% |
| ! | TAAGAGTTGGTCGTCTTCGT+CGG | - | chr3.1:84331695-84331714 | MS.gene32681:intron | 45.0% |
| ! | TAGAAACCGGAATCTGGTTC+AGG | + | chr3.1:84331171-84331190 | None:intergenic | 45.0% |
| ! | TGGCGCAAGTTCTTCTGTTT+TGG | - | chr3.1:84331746-84331765 | MS.gene32681:intron | 45.0% |
| !! | GAAGAAGAAGGATTGGTTGG+TGG | + | chr3.1:84331018-84331037 | None:intergenic | 45.0% |
| !! | GCTTCTTCTGGTGGATCTTT+TGG | - | chr3.1:84331726-84331745 | MS.gene32681:intron | 45.0% |
| !! | TGGTTGGTGGTGAATCGAAT+GGG | + | chr3.1:84331005-84331024 | None:intergenic | 45.0% |
| !! | TTGGTTGGTGGTGAATCGAA+TGG | + | chr3.1:84331006-84331025 | None:intergenic | 45.0% |
| AACACGAGAGCGAGATTTGG+TGG | - | chr3.1:84331336-84331355 | MS.gene32681:CDS | 50.0% | |
| ATAGGTGGTGAGGTTAGGGT+TGG | + | chr3.1:84330896-84330915 | None:intergenic | 50.0% | |
| GCGAAGTAGAAACCGGAATC+TGG | + | chr3.1:84331177-84331196 | None:intergenic | 50.0% | |
| TCAGGACCTGAACCAGATTC+CGG | - | chr3.1:84331162-84331181 | MS.gene32681:CDS | 50.0% | |
| TGGTGAATGACGGTTGTCGT+CGG | + | chr3.1:84330845-84330864 | None:intergenic | 50.0% | |
| ! | ACACGAGAGCGAGATTTGGT+GGG | - | chr3.1:84331337-84331356 | MS.gene32681:CDS | 50.0% |
| ! | GTGGTGGAAGAGATCATTCC+AGG | - | chr3.1:84331385-84331404 | MS.gene32681:CDS | 50.0% |
| ! | TTGTCGTCGGTTGTTGGAGA+GGG | + | chr3.1:84330832-84330851 | None:intergenic | 50.0% |
| !! | AGGTTAGGGTTGGTGGAATG+TGG | + | chr3.1:84330886-84330905 | None:intergenic | 50.0% |
| !! | GTCGTCTTCGTCGGTTTCAA+TGG | - | chr3.1:84331704-84331723 | MS.gene32681:intron | 50.0% |
| !! | TTAGGGTTGGTGGAATGTGG+CGG | + | chr3.1:84330883-84330902 | None:intergenic | 50.0% |
| !! | TTGGTGGTGAATCGAATGGG+TGG | + | chr3.1:84331002-84331021 | None:intergenic | 50.0% |
| GGAGAGGGACGGAAACAAGA+AGG | + | chr3.1:84330817-84330836 | None:intergenic | 55.0% | |
| ! | GTTGTCGTCGGTTGTTGGAG+AGG | + | chr3.1:84330833-84330852 | None:intergenic | 55.0% |
| ! | TGACGGTTGTCGTCGGTTGT+TGG | + | chr3.1:84330838-84330857 | None:intergenic | 55.0% |
| !! | GTGGTGGTGGTGGTGAATGA+CGG | + | chr3.1:84330855-84330874 | None:intergenic | 55.0% |
| GGTGGTGAGGTTAGGGTTGG+TGG | + | chr3.1:84330893-84330912 | None:intergenic | 60.0% | |
| ! | CGTCGGTTGTTGGAGAGGGA+CGG | + | chr3.1:84330828-84330847 | None:intergenic | 60.0% |
| ! | TTGGTGGAATGTGGCGGAGG+CGG | + | chr3.1:84330877-84330896 | None:intergenic | 60.0% |
| !! | GGGTTGGTGGAATGTGGCGG+AGG | + | chr3.1:84330880-84330899 | None:intergenic | 65.0% |
| ! | GAATGTGGCGGAGGCGGTGG+TGG | + | chr3.1:84330871-84330890 | None:intergenic | 70.0% |
| ! | GTGGAATGTGGCGGAGGCGG+TGG | + | chr3.1:84330874-84330893 | None:intergenic | 70.0% |
| ! | TGTGGCGGAGGCGGTGGTGG+TGG | + | chr3.1:84330868-84330887 | None:intergenic | 75.0% |
| !!! | GGCGGAGGCGGTGGTGGTGG+TGG | + | chr3.1:84330865-84330884 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 84330796 | 84331845 | 84330796 | ID=MS.gene32681 |
| chr3.1 | mRNA | 84330796 | 84331845 | 84330796 | ID=MS.gene32681.t1;Parent=MS.gene32681 |
| chr3.1 | exon | 84331788 | 84331845 | 84331788 | ID=MS.gene32681.t1.exon1;Parent=MS.gene32681.t1 |
| chr3.1 | CDS | 84331788 | 84331845 | 84331788 | ID=cds.MS.gene32681.t1;Parent=MS.gene32681.t1 |
| chr3.1 | exon | 84330796 | 84331475 | 84330796 | ID=MS.gene32681.t1.exon2;Parent=MS.gene32681.t1 |
| chr3.1 | CDS | 84330796 | 84331475 | 84330796 | ID=cds.MS.gene32681.t1;Parent=MS.gene32681.t1 |
| Gene Sequence |
| Protein sequence |
