Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35003.t1 | RHN42290.1 | 98.9 | 363 | 4 | 0 | 1 | 363 | 1 | 363 | 4.40E-127 | 464.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35003.t1 | F4IP06 | 58.1 | 360 | 146 | 2 | 9 | 363 | 4 | 363 | 1.7e-71 | 271.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35003.t1 | A0A396GMM6 | 98.9 | 363 | 4 | 0 | 1 | 363 | 1 | 363 | 3.2e-127 | 464.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene35003 | 0.800531 | 1.38E-48 | -1.69E-46 |
| MS.gene049341 | MS.gene35003 | 0.810146 | 1.33E-50 | -1.69E-46 |
| MS.gene049808 | MS.gene35003 | 0.812328 | 4.48E-51 | -1.69E-46 |
| MS.gene050237 | MS.gene35003 | 0.80633 | 8.67E-50 | -1.69E-46 |
| MS.gene050384 | MS.gene35003 | 0.811367 | 7.25E-51 | -1.69E-46 |
| MS.gene050386 | MS.gene35003 | 0.812691 | 3.73E-51 | -1.69E-46 |
| MS.gene050689 | MS.gene35003 | 0.822971 | 1.78E-53 | -1.69E-46 |
| MS.gene051102 | MS.gene35003 | 0.819662 | 1.03E-52 | -1.69E-46 |
| MS.gene051328 | MS.gene35003 | 0.810015 | 1.42E-50 | -1.69E-46 |
| MS.gene052516 | MS.gene35003 | 0.810582 | 1.07E-50 | -1.69E-46 |
| MS.gene052665 | MS.gene35003 | 0.805633 | 1.22E-49 | -1.69E-46 |
| MS.gene052856 | MS.gene35003 | 0.804736 | 1.87E-49 | -1.69E-46 |
| MS.gene052863 | MS.gene35003 | 0.802256 | 6.11E-49 | -1.69E-46 |
| MS.gene053079 | MS.gene35003 | 0.80901 | 2.34E-50 | -1.69E-46 |
| MS.gene053565 | MS.gene35003 | 0.821336 | 4.26E-53 | -1.69E-46 |
| MS.gene05462 | MS.gene35003 | 0.82007 | 8.33E-53 | -1.69E-46 |
| MS.gene055512 | MS.gene35003 | 0.846472 | 2.13E-59 | -1.69E-46 |
| MS.gene056181 | MS.gene35003 | 0.801601 | 8.34E-49 | -1.69E-46 |
| MS.gene056432 | MS.gene35003 | 0.800195 | 1.62E-48 | -1.69E-46 |
| MS.gene056553 | MS.gene35003 | 0.818284 | 2.12E-52 | -1.69E-46 |
| MS.gene056760 | MS.gene35003 | 0.83743 | 5.22E-57 | -1.69E-46 |
| MS.gene057057 | MS.gene35003 | 0.804968 | 1.67E-49 | -1.69E-46 |
| MS.gene057140 | MS.gene35003 | 0.813487 | 2.50E-51 | -1.69E-46 |
| MS.gene057234 | MS.gene35003 | 0.806473 | 8.09E-50 | -1.69E-46 |
| MS.gene057869 | MS.gene35003 | 0.800767 | 1.24E-48 | -1.69E-46 |
| MS.gene058054 | MS.gene35003 | 0.809556 | 1.78E-50 | -1.69E-46 |
| MS.gene058055 | MS.gene35003 | 0.824142 | 9.47E-54 | -1.69E-46 |
| MS.gene059713 | MS.gene35003 | 0.814155 | 1.78E-51 | -1.69E-46 |
| MS.gene05978 | MS.gene35003 | 0.814953 | 1.18E-51 | -1.69E-46 |
| MS.gene060587 | MS.gene35003 | 0.802681 | 5.00E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35003.t1 | AT2G36740 | 59.710 | 345 | 130 | 3 | 14 | 351 | 9 | 351 | 1.77e-129 | 375 |
| MS.gene35003.t1 | AT2G36740 | 62.126 | 301 | 105 | 3 | 10 | 303 | 5 | 303 | 2.01e-116 | 341 |
Find 0 sgRNAs with CRISPR-Local
Find 289 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTTTTTTTCTTTTTTTTTT+TGG | + | 33316:4243-4262 | MS.gene35003:intron | 10.0% |
| !! | TACTGTTATAAAAGAATATT+AGG | - | 33316:6348-6367 | MS.gene35003:intergenic | 15.0% |
| !! | TTATAAGAACAATTATAACT+AGG | - | 33316:6863-6882 | MS.gene35003:intergenic | 15.0% |
| !! | TTCAATACAAAAAAAATTGA+CGG | + | 33316:5667-5686 | MS.gene35003:intron | 15.0% |
| !!! | ATCATAAAAAGTTATCTTTT+TGG | - | 33316:6416-6435 | MS.gene35003:intergenic | 15.0% |
| !!! | CTAACTAATTTTTGTAAATT+CGG | - | 33316:5076-5095 | MS.gene35003:intergenic | 15.0% |
| !!! | GTTTAATTAGTTTAAAGTTA+GGG | + | 33316:5689-5708 | MS.gene35003:intron | 15.0% |
| !! | AAATATAGTGCTAGAATAAA+AGG | - | 33316:4736-4755 | MS.gene35003:intergenic | 20.0% |
| !! | AACTTAAATGCTTATCATAT+AGG | - | 33316:4161-4180 | MS.gene35003:intergenic | 20.0% |
| !! | AATATAGTGCTAGAATAAAA+GGG | - | 33316:4735-4754 | MS.gene35003:intergenic | 20.0% |
| !! | CGAATTTACAAAAATTAGTT+AGG | + | 33316:5074-5093 | MS.gene35003:intron | 20.0% |
| !! | CTTATTTCAATAATCTTTCT+GGG | - | 33316:3956-3975 | MS.gene35003:intergenic | 20.0% |
| !! | GAAGAAAATCTTATCTAATT+TGG | + | 33316:3452-3471 | MS.gene35003:CDS | 20.0% |
| !! | GAATTCGTTAGATAAAAAAT+TGG | + | 33316:5638-5657 | MS.gene35003:intron | 20.0% |
| !! | TACAAAAATTAGTTAGGTTT+AGG | + | 33316:5080-5099 | MS.gene35003:intron | 20.0% |
| !! | TTAAAGTAGAAAAATGTTTC+AGG | + | 33316:5442-5461 | MS.gene35003:intron | 20.0% |
| !! | TTAGTAATTCAATAACATCA+TGG | - | 33316:6534-6553 | MS.gene35003:intergenic | 20.0% |
| !! | TTATTTCAATAATCTTTCTG+GGG | - | 33316:3955-3974 | MS.gene35003:intergenic | 20.0% |
| !!! | AAAATTGATGATAATGATGA+CGG | + | 33316:3486-3505 | MS.gene35003:CDS | 20.0% |
| !!! | AAATATAAAAGCATTCATGT+GGG | + | 33316:6981-7000 | MS.gene35003:intron | 20.0% |
| !!! | ACTAAGTGTTTTAGATAATT+AGG | + | 33316:5360-5379 | MS.gene35003:intron | 20.0% |
| !!! | ATTTTTGTAAATTCGGTATT+TGG | - | 33316:5069-5088 | MS.gene35003:intergenic | 20.0% |
| !!! | CTAAGTGTTTTAGATAATTA+GGG | + | 33316:5361-5380 | MS.gene35003:intron | 20.0% |
| !!! | CTTGTAATTGATTTTAATTG+GGG | + | 33316:7093-7112 | MS.gene35003:intron | 20.0% |
| !!! | CTTTTAAAATAATTCGACAA+CGG | + | 33316:6270-6289 | MS.gene35003:CDS | 20.0% |
| !!! | GCTTGTAATTGATTTTAATT+GGG | + | 33316:7092-7111 | MS.gene35003:intron | 20.0% |
| !!! | GGTTTAATTAGTTTAAAGTT+AGG | + | 33316:5688-5707 | MS.gene35003:intron | 20.0% |
| !!! | GTAAAACTTTTTCTACTTAA+AGG | - | 33316:5480-5499 | MS.gene35003:intergenic | 20.0% |
| !!! | TAAATATAAAAGCATTCATG+TGG | + | 33316:6980-6999 | MS.gene35003:intron | 20.0% |
| !!! | TCATCATTATCATCAATTTT+GGG | - | 33316:3486-3505 | MS.gene35003:intergenic | 20.0% |
| !!! | TGCTTGTAATTGATTTTAAT+TGG | + | 33316:7091-7110 | MS.gene35003:intron | 20.0% |
| !!! | TTTATTCTAGCACTATATTT+TGG | + | 33316:4736-4755 | MS.gene35003:intron | 20.0% |
| !!! | TTTTATCTATTGTTGTGATA+AGG | - | 33316:3884-3903 | MS.gene35003:intergenic | 20.0% |
| !!! | TTTTTTTTTTCATTCTGCAA+TGG | + | 33316:6459-6478 | MS.gene35003:intron | 20.0% |
| ! | AAAATATACATCCACATGAT+CGG | + | 33316:7241-7260 | MS.gene35003:CDS | 25.0% |
| ! | AAATTAGTTAGGTTTAGGAA+AGG | + | 33316:5085-5104 | MS.gene35003:intron | 25.0% |
| ! | AAGCATAATTGAAACATCAA+AGG | - | 33316:4421-4440 | MS.gene35003:intergenic | 25.0% |
| ! | AATAAGCTTATAACAGCTTA+TGG | + | 33316:3970-3989 | MS.gene35003:intron | 25.0% |
| ! | AATGAATAAAAAGAAGCGAT+TGG | + | 33316:3389-3408 | MS.gene35003:CDS | 25.0% |
| ! | AATGACGAAACAATTTCTTT+GGG | - | 33316:4835-4854 | MS.gene35003:intergenic | 25.0% |
| ! | AATTATGAACTTGAGGAATT+TGG | + | 33316:4454-4473 | MS.gene35003:CDS | 25.0% |
| ! | ACAGATTGCTATATGTAAAA+TGG | - | 33316:4625-4644 | MS.gene35003:intergenic | 25.0% |
| ! | AGGATTAAACACAATTTCAT+GGG | - | 33316:6843-6862 | MS.gene35003:intergenic | 25.0% |
| ! | ATACACTACATATCACAAAA+TGG | + | 33316:4551-4570 | MS.gene35003:CDS | 25.0% |
| ! | ATGTAATATATTCCGTTTCT+TGG | + | 33316:4778-4797 | MS.gene35003:intron | 25.0% |
| ! | ATGTATAGTAAACAATGAGT+AGG | + | 33316:5123-5142 | MS.gene35003:intron | 25.0% |
| ! | CTTAACAGAATCTATGTAAA+TGG | + | 33316:4062-4081 | MS.gene35003:intron | 25.0% |
| ! | GCTTATTTCAATAATCTTTC+TGG | - | 33316:3957-3976 | MS.gene35003:intergenic | 25.0% |
| ! | TAAGATTTGCAACTATGTAT+GGG | + | 33316:5510-5529 | MS.gene35003:intron | 25.0% |
| ! | TAATTCAATAACATCATGGT+GGG | - | 33316:6530-6549 | MS.gene35003:intergenic | 25.0% |
| ! | TACATAGATTCTGTTAAGAT+TGG | - | 33316:4060-4079 | MS.gene35003:intergenic | 25.0% |
| ! | TAGGATTAAACACAATTTCA+TGG | - | 33316:6844-6863 | MS.gene35003:intergenic | 25.0% |
| ! | TCTAGAAAAGAAACGAATAT+GGG | + | 33316:7150-7169 | MS.gene35003:CDS | 25.0% |
| ! | TGAATCACAGAAAAAGATAT+TGG | - | 33316:3661-3680 | MS.gene35003:intergenic | 25.0% |
| !! | ATCTTTTTCTGTGATTCATT+AGG | + | 33316:3663-3682 | MS.gene35003:intron | 25.0% |
| !! | GTCATCATTATCATCAATTT+TGG | - | 33316:3487-3506 | MS.gene35003:intergenic | 25.0% |
| !! | TAATTCTTCTTGATTTTCTC+AGG | + | 33316:3323-3342 | MS.gene35003:intron | 25.0% |
| !! | TATCTAAAACACTTAGTTGT+GGG | - | 33316:5357-5376 | MS.gene35003:intergenic | 25.0% |
| !! | TCTTTTTCTGTGATTCATTA+GGG | + | 33316:3664-3683 | MS.gene35003:intron | 25.0% |
| !! | TGATGTTTCAATTATGCTTT+TGG | + | 33316:4422-4441 | MS.gene35003:intron | 25.0% |
| !! | TTATCTAAAACACTTAGTTG+TGG | - | 33316:5358-5377 | MS.gene35003:intergenic | 25.0% |
| !!! | AGCAATCTGTTTATTTTTTC+AGG | + | 33316:4635-4654 | MS.gene35003:intron | 25.0% |
| AAAAAAAGAAGTAGTTCAGC+CGG | + | 33316:6138-6157 | MS.gene35003:intron | 30.0% | |
| AAGTTTACTTGCAATCTAGA+AGG | - | 33316:6301-6320 | MS.gene35003:intergenic | 30.0% | |
| AATTCAATAACATCATGGTG+GGG | - | 33316:6529-6548 | MS.gene35003:intergenic | 30.0% | |
| ACATAGTTGCAAATCTTACT+AGG | - | 33316:5508-5527 | MS.gene35003:intergenic | 30.0% | |
| ACTACATATCACAAAATGGT+TGG | + | 33316:4555-4574 | MS.gene35003:intron | 30.0% | |
| ATAGACAAAGGGAAATATTC+CGG | - | 33316:6160-6179 | MS.gene35003:intergenic | 30.0% | |
| ATAGTAAACAATGAGTAGGA+AGG | + | 33316:5127-5146 | MS.gene35003:intron | 30.0% | |
| ATTGTTGGATAGCTAATGAT+GGG | + | 33316:6726-6745 | MS.gene35003:intron | 30.0% | |
| CAAAGAAATTGTTTCGTCAT+TGG | + | 33316:4834-4853 | MS.gene35003:intron | 30.0% | |
| CAATGACGAAACAATTTCTT+TGG | - | 33316:4836-4855 | MS.gene35003:intergenic | 30.0% | |
| CTATCTTGAAAAACAGCTTA+TGG | - | 33316:3825-3844 | MS.gene35003:intergenic | 30.0% | |
| CTGTACCTCAAATATTGTTA+AGG | + | 33316:6185-6204 | MS.gene35003:intron | 30.0% | |
| GAAAACTAAAACAAACAAGC+AGG | - | 33316:4391-4410 | MS.gene35003:intergenic | 30.0% | |
| GAACTCCTTAACAATATTTG+AGG | - | 33316:6193-6212 | MS.gene35003:intergenic | 30.0% | |
| GAACTTTATGAACCAAGAAA+CGG | - | 33316:4793-4812 | MS.gene35003:intergenic | 30.0% | |
| GGTCAATATTAGAATACACT+TGG | + | 33316:4343-4362 | MS.gene35003:intron | 30.0% | |
| GTAAGATTTGCAACTATGTA+TGG | + | 33316:5509-5528 | MS.gene35003:intron | 30.0% | |
| GTAATTCAATAACATCATGG+TGG | - | 33316:6531-6550 | MS.gene35003:intergenic | 30.0% | |
| GTGCATAAAACTGTCTTTAA+TGG | + | 33316:4521-4540 | MS.gene35003:CDS | 30.0% | |
| GTTAATGTGATTCACTTCAT+AGG | + | 33316:6369-6388 | MS.gene35003:intron | 30.0% | |
| TAATAATCCAACTGAACTAC+TGG | - | 33316:6111-6130 | MS.gene35003:intergenic | 30.0% | |
| TAGACAATAACTCGAATAAC+TGG | + | 33316:4900-4919 | MS.gene35003:intron | 30.0% | |
| TATTGTTGGATAGCTAATGA+TGG | + | 33316:6725-6744 | MS.gene35003:intron | 30.0% | |
| TCAACAAGATGAATTGTTCT+GGG | + | 33316:3139-3158 | MS.gene35003:CDS | 30.0% | |
| TCACATCAATACATCAAGAA+AGG | - | 33316:6071-6090 | MS.gene35003:intergenic | 30.0% | |
| TCTGAAAAGCTAGAGAAATT+GGG | - | 33316:6784-6803 | MS.gene35003:intergenic | 30.0% | |
| TGACATTATAACAAGTGCTA+AGG | + | 33316:4993-5012 | MS.gene35003:intron | 30.0% | |
| TGATCTAATGTTCCAATAGA+AGG | + | 33316:6484-6503 | MS.gene35003:intron | 30.0% | |
| TTCAACAAGATGAATTGTTC+TGG | + | 33316:3138-3157 | MS.gene35003:CDS | 30.0% | |
| ! | AACATTTTCAGACCATAATC+AGG | - | 33316:4226-4245 | MS.gene35003:intergenic | 30.0% |
| ! | ATTCTTTCATCATCGTTTTG+TGG | - | 33316:3372-3391 | MS.gene35003:intergenic | 30.0% |
| ! | CGTATTTGGAGTTTACTAAA+GGG | + | 33316:4663-4682 | MS.gene35003:CDS | 30.0% |
| ! | CTCTAGAAAAGAAACGAATA+TGG | + | 33316:7149-7168 | MS.gene35003:CDS | 30.0% |
| ! | GCAGTTGAACATAAATGTTT+TGG | + | 33316:5017-5036 | MS.gene35003:intron | 30.0% |
| ! | GTATTTGGAGTTTACTAAAG+GGG | + | 33316:4664-4683 | MS.gene35003:CDS | 30.0% |
| ! | TAACAATATTTGAGGTACAG+TGG | - | 33316:6185-6204 | MS.gene35003:intergenic | 30.0% |
| ! | TAATCGGTATGAATGAGTTT+TGG | - | 33316:3269-3288 | MS.gene35003:intergenic | 30.0% |
| ! | TATGATTCAGTTTCTGGATA+TGG | + | 33316:7180-7199 | MS.gene35003:CDS | 30.0% |
| ! | TCATTATCATCAATTTTGGG+AGG | - | 33316:3483-3502 | MS.gene35003:intergenic | 30.0% |
| ! | TCGTATTTGGAGTTTACTAA+AGG | + | 33316:4662-4681 | MS.gene35003:CDS | 30.0% |
| ! | TGAGAAGAATTTAAAGTACC+CGG | + | 33316:5862-5881 | MS.gene35003:intron | 30.0% |
| !! | ATGTTGGTAACTCTTACAAA+TGG | + | 33316:5795-5814 | MS.gene35003:intron | 30.0% |
| !! | TGCATTTAGTTTGGTTGTAT+TGG | + | 33316:4593-4612 | MS.gene35003:intron | 30.0% |
| !! | TGTTGGTAACTCTTACAAAT+GGG | + | 33316:5796-5815 | MS.gene35003:intron | 30.0% |
| !!! | ATAAATGTTTTGGAGACCAA+GGG | + | 33316:5027-5046 | MS.gene35003:intron | 30.0% |
| !!! | TTTTTCAGGTTGTTCGTATT+TGG | + | 33316:4649-4668 | MS.gene35003:intron | 30.0% |
| AAACAACAAGAACAACAACC+AGG | + | 33316:3521-3540 | MS.gene35003:CDS | 35.0% | |
| AAACCAGTAATAACGCAAAC+AGG | - | 33316:6032-6051 | MS.gene35003:intergenic | 35.0% | |
| AAGTTAGGGTAGCTACTATA+TGG | + | 33316:5703-5722 | MS.gene35003:intron | 35.0% | |
| AATAACTGGACACATTCCAA+AGG | + | 33316:4914-4933 | MS.gene35003:intron | 35.0% | |
| ACAACCAAACTAAATGCACA+TGG | - | 33316:4591-4610 | MS.gene35003:intergenic | 35.0% | |
| AGAAAAGAAACGAATATGGG+AGG | + | 33316:7153-7172 | MS.gene35003:CDS | 35.0% | |
| AGATAGCTTATGCTTCTGTT+TGG | + | 33316:3839-3858 | MS.gene35003:intron | 35.0% | |
| AGTTACGTCTTGATCGAAAT+CGG | - | 33316:3240-3259 | MS.gene35003:intergenic | 35.0% | |
| ATAATATGCGAGGTTGAAGA+TGG | + | 33316:5771-5790 | MS.gene35003:intron | 35.0% | |
| ATGTATGGGTCAGAAATGTT+GGG | + | 33316:5524-5543 | MS.gene35003:intron | 35.0% | |
| CAACAAGATGAATTGTTCTG+GGG | + | 33316:3140-3159 | MS.gene35003:CDS | 35.0% | |
| CATTCCATGTGCATTTAGTT+TGG | + | 33316:4584-4603 | MS.gene35003:intron | 35.0% | |
| CTGCAGAAATTATGAACTTG+AGG | + | 33316:4447-4466 | MS.gene35003:intron | 35.0% | |
| CTTAAGATGACATGGTTCAT+TGG | - | 33316:6607-6626 | MS.gene35003:intergenic | 35.0% | |
| CTTATAACAGCTTATGGACA+TGG | + | 33316:3976-3995 | MS.gene35003:intron | 35.0% | |
| CTTTCCTTCTTAAGATGACA+TGG | - | 33316:6615-6634 | MS.gene35003:intergenic | 35.0% | |
| GAATCTTCATCCTCAAAAGT+AGG | - | 33316:7291-7310 | MS.gene35003:intergenic | 35.0% | |
| GATATTGGAGATAACCTTGT+AGG | - | 33316:3646-3665 | MS.gene35003:intergenic | 35.0% | |
| GCAATCATGAGCATAAATGA+TGG | + | 33316:5556-5575 | MS.gene35003:intron | 35.0% | |
| GGCTTATATGATTCAGTTTC+TGG | + | 33316:7174-7193 | MS.gene35003:CDS | 35.0% | |
| GGGTGTATCTTACAAAAGAA+AGG | + | 33316:5381-5400 | MS.gene35003:intron | 35.0% | |
| GTAACTCTTACAAATGGGTA+GGG | + | 33316:5801-5820 | MS.gene35003:intron | 35.0% | |
| GTTCTTCTAAACAATATCCC+AGG | + | 33316:4004-4023 | MS.gene35003:intron | 35.0% | |
| TAAACACAATTTCATGGGTG+TGG | - | 33316:6838-6857 | MS.gene35003:intergenic | 35.0% | |
| TAACTCTTACAAATGGGTAG+GGG | + | 33316:5802-5821 | MS.gene35003:intron | 35.0% | |
| TACATAGAATTTCCTGATGC+CGG | - | 33316:5884-5903 | MS.gene35003:intergenic | 35.0% | |
| TATGTATGGGTCAGAAATGT+TGG | + | 33316:5523-5542 | MS.gene35003:intron | 35.0% | |
| TCTTGTGTAAAAACAGGGTA+AGG | - | 33316:5252-5271 | MS.gene35003:intergenic | 35.0% | |
| TGAACCATGTCATCTTAAGA+AGG | + | 33316:6608-6627 | MS.gene35003:intron | 35.0% | |
| TGAGCATAAATGATGGTTGT+AGG | + | 33316:5563-5582 | MS.gene35003:intron | 35.0% | |
| TGTATTTGTGCTCATCTAGT+GGG | + | 33316:3745-3764 | MS.gene35003:intron | 35.0% | |
| TGTGATATGTAGTGTATCTG+TGG | - | 33316:4548-4567 | MS.gene35003:intergenic | 35.0% | |
| TTAGTTAGGTTTAGGAAAGG+AGG | + | 33316:5088-5107 | MS.gene35003:intron | 35.0% | |
| TTCAACCTCGCATATTATGA+AGG | - | 33316:5769-5788 | MS.gene35003:intergenic | 35.0% | |
| TTCCAAACAACACCTGATTA+TGG | + | 33316:4211-4230 | MS.gene35003:intron | 35.0% | |
| TTGATTACCAGTAGTTCAGT+TGG | + | 33316:6101-6120 | MS.gene35003:intron | 35.0% | |
| ! | AAAGCTTCTTTTGTAGCGTA+TGG | - | 33316:6254-6273 | MS.gene35003:intergenic | 35.0% |
| ! | AGCATTTAAGTTAGAAGCAC+TGG | + | 33316:4169-4188 | MS.gene35003:intron | 35.0% |
| ! | CATTGTCGATCTCTTTTTCT+TGG | - | 33316:7214-7233 | MS.gene35003:intergenic | 35.0% |
| ! | CTCTGAAAAGCTAGAGAAAT+TGG | - | 33316:6785-6804 | MS.gene35003:intergenic | 35.0% |
| ! | TTCAGATGGTATCATTTTGC+TGG | + | 33316:4960-4979 | MS.gene35003:intron | 35.0% |
| !! | TCGTAGAATTCCTACTTTTG+AGG | + | 33316:7278-7297 | MS.gene35003:CDS | 35.0% |
| !! | TTTCTTAGTCTTGAAGTCCA+AGG | + | 33316:6695-6714 | MS.gene35003:intron | 35.0% |
| !!! | CATAAATGTTTTGGAGACCA+AGG | + | 33316:5026-5045 | MS.gene35003:intron | 35.0% |
| !!! | TTACCCTGTTTTTACACAAG+AGG | + | 33316:5251-5270 | MS.gene35003:intron | 35.0% |
| AACTCTTACAAATGGGTAGG+GGG | + | 33316:5803-5822 | MS.gene35003:intron | 40.0% | |
| AAGAAGCGATTGGTATATCC+TGG | + | 33316:3399-3418 | MS.gene35003:CDS | 40.0% | |
| AAGCTAGAGAAATTGGGTGA+AGG | - | 33316:6778-6797 | MS.gene35003:intergenic | 40.0% | |
| AAGGAGTTCTCTCTTGATAC+AGG | + | 33316:6204-6223 | MS.gene35003:intron | 40.0% | |
| ACAACTAAGTAAGGGCAATC+CGG | + | 33316:5160-5179 | MS.gene35003:intron | 40.0% | |
| ACAACTCAAGAGAAATCCCT+TGG | - | 33316:5046-5065 | MS.gene35003:intergenic | 40.0% | |
| ACAGCCTCTTGTGTAAAAAC+AGG | - | 33316:5258-5277 | MS.gene35003:intergenic | 40.0% | |
| ACATAGAATTTCCTGATGCC+GGG | - | 33316:5883-5902 | MS.gene35003:intergenic | 40.0% | |
| ACATGCCTTCATAATATGCG+AGG | + | 33316:5761-5780 | MS.gene35003:intron | 40.0% | |
| AGAAGCGATTGGTATATCCT+GGG | + | 33316:3400-3419 | MS.gene35003:CDS | 40.0% | |
| AGTAATAAGGAAGAAAGGCG+AGG | + | 33316:4273-4292 | MS.gene35003:CDS | 40.0% | |
| ATAACGCAAACAGGTTGTTC+TGG | - | 33316:6023-6042 | MS.gene35003:intergenic | 40.0% | |
| ATCTACTAGCATAAGCACCT+GGG | - | 33316:4024-4043 | MS.gene35003:intergenic | 40.0% | |
| ATGATGGTTGTAGGAATGAG+TGG | + | 33316:5572-5591 | MS.gene35003:intron | 40.0% | |
| ATGCCAAGGAGGTAATGATT+AGG | + | 33316:3550-3569 | MS.gene35003:CDS | 40.0% | |
| ATGTCCCACAATATCCAAAC+AGG | + | 33316:5414-5433 | MS.gene35003:intron | 40.0% | |
| CAACCTGTTTGCGTTATTAC+TGG | + | 33316:6026-6045 | MS.gene35003:CDS | 40.0% | |
| CAGCCAGTAATAAGGAAGAA+AGG | + | 33316:4268-4287 | MS.gene35003:intron | 40.0% | |
| CAGCCTCTTGTGTAAAAACA+GGG | - | 33316:5257-5276 | MS.gene35003:intergenic | 40.0% | |
| CATCAAGAAAGGCTCTTACT+TGG | - | 33316:6060-6079 | MS.gene35003:intergenic | 40.0% | |
| CGTACAATACACCAAATGGT+GGG | - | 33316:5226-5245 | MS.gene35003:intergenic | 40.0% | |
| CTACTTTAACCTGTCCTGTT+TGG | - | 33316:5431-5450 | MS.gene35003:intergenic | 40.0% | |
| CTGTAAGAGCTATTGCATGA+GGG | + | 33316:6950-6969 | MS.gene35003:intron | 40.0% | |
| CTGTCCTGTTTGGATATTGT+GGG | - | 33316:5421-5440 | MS.gene35003:intergenic | 40.0% | |
| CTTCCTAATCATTACCTCCT+TGG | - | 33316:3556-3575 | MS.gene35003:intergenic | 40.0% | |
| GAGATCGAATCTTCTACTAC+TGG | + | 33316:3058-3077 | MS.gene35003:CDS | 40.0% | |
| GAGTACCCACAACTAAGTAA+GGG | + | 33316:5152-5171 | MS.gene35003:intron | 40.0% | |
| GATTGCCCTTACTTAGTTGT+GGG | - | 33316:5160-5179 | MS.gene35003:intergenic | 40.0% | |
| GCTCTCACAAATAATCTCAC+AGG | - | 33316:3778-3797 | MS.gene35003:intergenic | 40.0% | |
| GGAGAAGAAAATGTCACAAG+AGG | + | 33316:4294-4313 | MS.gene35003:CDS | 40.0% | |
| GGTAACTCTTACAAATGGGT+AGG | + | 33316:5800-5819 | MS.gene35003:intron | 40.0% | |
| GTACAGTGGCTATAGACAAA+GGG | - | 33316:6171-6190 | MS.gene35003:intergenic | 40.0% | |
| GTGTATTTGTGCTCATCTAG+TGG | + | 33316:3744-3763 | MS.gene35003:intron | 40.0% | |
| GTTGTTGTCATGTGACTGTA+AGG | - | 33316:5302-5321 | MS.gene35003:intergenic | 40.0% | |
| TATCTACTAGCATAAGCACC+TGG | - | 33316:4025-4044 | MS.gene35003:intergenic | 40.0% | |
| TCCAACAATAGTATGTGCCT+TGG | - | 33316:6715-6734 | MS.gene35003:intergenic | 40.0% | |
| TCCAAGGCACATACTATTGT+TGG | + | 33316:6711-6730 | MS.gene35003:intron | 40.0% | |
| TCGCCTTTCTTCCTTATTAC+TGG | - | 33316:4274-4293 | MS.gene35003:intergenic | 40.0% | |
| TGTAAGAGCTATTGCATGAG+GGG | + | 33316:6951-6970 | MS.gene35003:intron | 40.0% | |
| TGTAGGAATGAGTGGAGTAT+GGG | + | 33316:5580-5599 | MS.gene35003:intron | 40.0% | |
| TTAGGTTTAGGAAAGGAGGA+TGG | + | 33316:5092-5111 | MS.gene35003:intron | 40.0% | |
| TTGTAGGAATGAGTGGAGTA+TGG | + | 33316:5579-5598 | MS.gene35003:intron | 40.0% | |
| ! | AATTTAAAGTACCCGGCATC+AGG | + | 33316:5869-5888 | MS.gene35003:intron | 40.0% |
| ! | AGAGTACCCACAACTAAGTA+AGG | + | 33316:5151-5170 | MS.gene35003:intron | 40.0% |
| ! | CATATTATGAAGGCATGTGG+TGG | - | 33316:5759-5778 | MS.gene35003:intergenic | 40.0% |
| ! | GGGAGTTGGTTAATGATAGT+AGG | + | 33316:7001-7020 | MS.gene35003:intron | 40.0% |
| ! | GTCGATCTCTTTTTCTTGGT+TGG | - | 33316:7210-7229 | MS.gene35003:intergenic | 40.0% |
| ! | GTTTTGTGGCTGTTCTTCAT+CGG | - | 33316:3358-3377 | MS.gene35003:intergenic | 40.0% |
| ! | TCGCATATTATGAAGGCATG+TGG | - | 33316:5762-5781 | MS.gene35003:intergenic | 40.0% |
| ! | TTTTGTGGCTGTTCTTCATC+GGG | - | 33316:3357-3376 | MS.gene35003:intergenic | 40.0% |
| !! | AAAAGCATTCATGTGGGAGT+TGG | + | 33316:6987-7006 | MS.gene35003:intron | 40.0% |
| !! | CTTTTAGAAGCTGCTCAAAC+AGG | + | 33316:4322-4341 | MS.gene35003:CDS | 40.0% |
| !! | GACCATAATCAGGTGTTGTT+TGG | - | 33316:4216-4235 | MS.gene35003:intergenic | 40.0% |
| !! | GGGATTATTTTGCAGCATTC+TGG | + | 33316:7113-7132 | MS.gene35003:intron | 40.0% |
| !!! | TCTAGCTTTTCAGAGAGAGA+TGG | + | 33316:6790-6809 | MS.gene35003:intron | 40.0% |
| !!! | TTTTGGCTCAGCCAGTAATA+AGG | + | 33316:4260-4279 | MS.gene35003:intron | 40.0% |
| AAGAAAGGCTCTTACTTGGC+AGG | - | 33316:6056-6075 | MS.gene35003:intergenic | 45.0% | |
| AATTCTACGAAACCGAGCCA+AGG | - | 33316:7268-7287 | MS.gene35003:intergenic | 45.0% | |
| ACATTCCAAAGGAAGGACCT+TGG | + | 33316:4925-4944 | MS.gene35003:intron | 45.0% | |
| ACTGGACACATTCCAAAGGA+AGG | + | 33316:4918-4937 | MS.gene35003:intron | 45.0% | |
| AGCTCTCAAAGCAACCTACA+AGG | + | 33316:3629-3648 | MS.gene35003:CDS | 45.0% | |
| CCACAATATCCAAACAGGAC+AGG | + | 33316:5419-5438 | MS.gene35003:intron | 45.0% | |
| CCTGTCCTGTTTGGATATTG+TGG | - | 33316:5422-5441 | MS.gene35003:intergenic | 45.0% | |
| CTGAAACAAAGCCTCTACCA+AGG | - | 33316:4945-4964 | MS.gene35003:intergenic | 45.0% | |
| GAAATCGGAGTCGAATTCGT+CGG | - | 33316:3225-3244 | MS.gene35003:intergenic | 45.0% | |
| GAATGGCTTCTCTTTCAGCT+TGG | - | 33316:3605-3624 | MS.gene35003:intergenic | 45.0% | |
| GATGCTCAACTTGCGTCATT+TGG | + | 33316:6651-6670 | MS.gene35003:intron | 45.0% | |
| GCGTACAATACACCAAATGG+TGG | - | 33316:5227-5246 | MS.gene35003:intergenic | 45.0% | |
| GCTGCGTACAATACACCAAA+TGG | - | 33316:5230-5249 | MS.gene35003:intergenic | 45.0% | |
| GCTGTAAGAGCTATTGCATG+AGG | + | 33316:6949-6968 | MS.gene35003:intron | 45.0% | |
| GGATTGCCCTTACTTAGTTG+TGG | - | 33316:5161-5180 | MS.gene35003:intergenic | 45.0% | |
| GGTACAGTGGCTATAGACAA+AGG | - | 33316:6172-6191 | MS.gene35003:intergenic | 45.0% | |
| GTCATGTGACTGTAAGGTCA+CGG | - | 33316:5296-5315 | MS.gene35003:intergenic | 45.0% | |
| GTCTGCAGTCATCCTTCTAT+TGG | - | 33316:6499-6518 | MS.gene35003:intergenic | 45.0% | |
| TACAGCTTGACGTGTAGAGT+TGG | - | 33316:6935-6954 | MS.gene35003:intergenic | 45.0% | |
| TCATGTGACTGTAAGGTCAC+GGG | - | 33316:5295-5314 | MS.gene35003:intergenic | 45.0% | |
| TTCAGCTTGGCGAACAATGA+CGG | - | 33316:3592-3611 | MS.gene35003:intergenic | 45.0% | |
| ! | AACATCATGGTGGGGAAAAC+TGG | - | 33316:6521-6540 | MS.gene35003:intergenic | 45.0% |
| ! | AAGCCTTATCCCACTAAGTG+GGG | - | 33316:5943-5962 | MS.gene35003:intergenic | 45.0% |
| ! | ACACTTAGTTGTGGGTACTG+AGG | - | 33316:5349-5368 | MS.gene35003:intergenic | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | - | 33316:5944-5963 | MS.gene35003:intergenic | 45.0% |
| ! | TTACACAAGAGGCTGTTTCC+AGG | + | 33316:5262-5281 | MS.gene35003:intron | 45.0% |
| !! | ACTTAGTTGTGGGTACTGAG+GGG | - | 33316:5347-5366 | MS.gene35003:intergenic | 45.0% |
| !! | AGATGAATTGTTCTGGGGTC+AGG | + | 33316:3145-3164 | MS.gene35003:CDS | 45.0% |
| !! | CACTTAGTTGTGGGTACTGA+GGG | - | 33316:5348-5367 | MS.gene35003:intergenic | 45.0% |
| !! | GGTAGAGGCTTTGTTTCAGA+TGG | + | 33316:4946-4965 | MS.gene35003:intron | 45.0% |
| !! | GAATTAATTAATTAATTAAT+CGG | - | 33316:3285-3304 | MS.gene35003:intergenic | 5.0% |
| ACATCCACATGATCGGTCCT+TGG | + | 33316:7248-7267 | MS.gene35003:CDS | 50.0% | |
| ACTGAAGCTTCCGCATATGC+AGG | + | 33316:5186-5205 | MS.gene35003:intron | 50.0% | |
| ATATCCTGGGAAGGCGACAT+TGG | + | 33316:3413-3432 | MS.gene35003:CDS | 50.0% | |
| CAAAGGAAGGACCTTGGTAG+AGG | + | 33316:4931-4950 | MS.gene35003:intron | 50.0% | |
| CAACTTTACCAGTTGCGCCA+AGG | + | 33316:5318-5337 | MS.gene35003:intron | 50.0% | |
| CCACTTAGTGGGATAAGGCT+TGG | + | 33316:5942-5961 | MS.gene35003:intron | 50.0% | |
| CGAGGTTGAAGATGGCATGT+TGG | + | 33316:5779-5798 | MS.gene35003:intron | 50.0% | |
| CGCACATTCTTGAGACGTTG+TGG | - | 33316:4711-4730 | MS.gene35003:intergenic | 50.0% | |
| CTCTACCAAGGTCCTTCCTT+TGG | - | 33316:4933-4952 | MS.gene35003:intergenic | 50.0% | |
| CTGAAGCTTCCGCATATGCA+GGG | + | 33316:5187-5206 | MS.gene35003:intron | 50.0% | |
| CTTATCCCACTAAGTGGGGT+CGG | - | 33316:5939-5958 | MS.gene35003:intergenic | 50.0% | |
| GCGATTGGTATATCCTGGGA+AGG | + | 33316:3404-3423 | MS.gene35003:CDS | 50.0% | |
| GGTACCGTGATCCAAAGACT+GGG | + | 33316:6225-6244 | MS.gene35003:intron | 50.0% | |
| GTCGAATTCGTCGGCGATTT+CGG | - | 33316:3216-3235 | MS.gene35003:intergenic | 50.0% | |
| GTGGGCATACTGAGATGGAT+AGG | + | 33316:5607-5626 | MS.gene35003:intron | 50.0% | |
| TATAGCCGACCCCACTTAGT+GGG | + | 33316:5931-5950 | MS.gene35003:intron | 50.0% | |
| TTATAGCCGACCCCACTTAG+TGG | + | 33316:5930-5949 | MS.gene35003:intron | 50.0% | |
| ! | AGGTACCGTGATCCAAAGAC+TGG | + | 33316:6224-6243 | MS.gene35003:intron | 50.0% |
| ! | CCAAGCCTTATCCCACTAAG+TGG | - | 33316:5945-5964 | MS.gene35003:intergenic | 50.0% |
| ! | GCGAACAATGACGGAAGTTC+TGG | - | 33316:3583-3602 | MS.gene35003:intergenic | 50.0% |
| !! | TGCTTTGAGAGCTTCGCGAA+TGG | - | 33316:3622-3641 | MS.gene35003:intergenic | 50.0% |
| !!! | GGAGCGAGTTTTAGCTAGAG+AGG | + | 33316:4475-4494 | MS.gene35003:CDS | 50.0% |
| AAGGTCACGGGTTCAAGTCC+TGG | - | 33316:5283-5302 | MS.gene35003:intergenic | 55.0% | |
| ATGCGGAAGCTTCAGTGCAC+CGG | - | 33316:5182-5201 | MS.gene35003:intergenic | 55.0% | |
| CAACCAGGACGATGATGCCA+AGG | + | 33316:3536-3555 | MS.gene35003:CDS | 55.0% | |
| CACATGATCGGTCCTTGGCT+CGG | + | 33316:7253-7272 | MS.gene35003:CDS | 55.0% | |
| CATATGCAGGGTCCAGGAAG+GGG | + | 33316:5199-5218 | MS.gene35003:intron | 55.0% | |
| CGACCCCACTTAGTGGGATA+AGG | + | 33316:5937-5956 | MS.gene35003:intron | 55.0% | |
| CGGCGATTTCGGCTTCTTCT+TGG | - | 33316:3205-3224 | MS.gene35003:intergenic | 55.0% | |
| CTTCCTGGACCCTGCATATG+CGG | - | 33316:5199-5218 | MS.gene35003:intergenic | 55.0% | |
| GACGAGTGGGCATACTGAGA+TGG | + | 33316:5602-5621 | MS.gene35003:intron | 55.0% | |
| GAGTGGAGTATGGGACGAGT+GGG | + | 33316:5589-5608 | MS.gene35003:intron | 55.0% | |
| GCAGCCCAGTCTTTGGATCA+CGG | - | 33316:6232-6251 | MS.gene35003:intergenic | 55.0% | |
| GCATATGCAGGGTCCAGGAA+GGG | + | 33316:5198-5217 | MS.gene35003:intron | 55.0% | |
| GGCTGTTCTTCATCGGGTTC+AGG | - | 33316:3351-3370 | MS.gene35003:intergenic | 55.0% | |
| TGAGTGGAGTATGGGACGAG+TGG | + | 33316:5588-5607 | MS.gene35003:intron | 55.0% | |
| TTAGCCAATGTCGCCTTCCC+AGG | - | 33316:3420-3439 | MS.gene35003:intergenic | 55.0% | |
| ! | ATTGGGTGAAGGCACGTGCA+TGG | - | 33316:6767-6786 | MS.gene35003:intergenic | 55.0% |
| !! | TGGGTACTGAGGGGTAACCT+TGG | - | 33316:5338-5357 | MS.gene35003:intergenic | 55.0% |
| AGGGGTAACCTTGGCGCAAC+TGG | - | 33316:5329-5348 | MS.gene35003:intergenic | 60.0% | |
| CAGGAAGGGGTCCCACCATT+TGG | + | 33316:5212-5231 | MS.gene35003:intron | 60.0% | |
| CCAGGACGATGATGCCAAGG+AGG | + | 33316:3539-3558 | MS.gene35003:CDS | 60.0% | |
| CCTCCTTGGCATCATCGTCC+TGG | - | 33316:3542-3561 | MS.gene35003:intergenic | 60.0% | |
| CGAGCCAAGGACCGATCATG+TGG | - | 33316:7255-7274 | MS.gene35003:intergenic | 60.0% | |
| CGCATATGCAGGGTCCAGGA+AGG | + | 33316:5197-5216 | MS.gene35003:intron | 60.0% | |
| CGTGCATCTCGAGCGACAAG+AGG | + | 33316:3083-3102 | MS.gene35003:CDS | 60.0% | |
| CTTCCGCATATGCAGGGTCC+AGG | + | 33316:5193-5212 | MS.gene35003:intron | 60.0% | |
| GCGTATGGCAGCCCAGTCTT+TGG | - | 33316:6239-6258 | MS.gene35003:intergenic | 60.0% | |
| ! | CAAATGGTGGGACCCCTTCC+TGG | - | 33316:5214-5233 | MS.gene35003:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 33316 | gene | 3029 | 7317 | 3029 | ID=MS.gene35003 |
| 33316 | mRNA | 3029 | 7317 | 3029 | ID=MS.gene35003.t1;Parent=MS.gene35003 |
| 33316 | exon | 3029 | 3253 | 3029 | ID=MS.gene35003.t1.exon1;Parent=MS.gene35003.t1 |
| 33316 | CDS | 3029 | 3253 | 3029 | ID=cds.MS.gene35003.t1;Parent=MS.gene35003.t1 |
| 33316 | exon | 3345 | 3650 | 3345 | ID=MS.gene35003.t1.exon2;Parent=MS.gene35003.t1 |
| 33316 | CDS | 3345 | 3650 | 3345 | ID=cds.MS.gene35003.t1;Parent=MS.gene35003.t1 |
| 33316 | exon | 4271 | 4343 | 4271 | ID=MS.gene35003.t1.exon3;Parent=MS.gene35003.t1 |
| 33316 | CDS | 4271 | 4343 | 4271 | ID=cds.MS.gene35003.t1;Parent=MS.gene35003.t1 |
| 33316 | exon | 4453 | 4572 | 4453 | ID=MS.gene35003.t1.exon4;Parent=MS.gene35003.t1 |
| 33316 | CDS | 4453 | 4572 | 4453 | ID=cds.MS.gene35003.t1;Parent=MS.gene35003.t1 |
| 33316 | exon | 4657 | 4725 | 4657 | ID=MS.gene35003.t1.exon5;Parent=MS.gene35003.t1 |
| 33316 | CDS | 4657 | 4725 | 4657 | ID=cds.MS.gene35003.t1;Parent=MS.gene35003.t1 |
| 33316 | exon | 6018 | 6060 | 6018 | ID=MS.gene35003.t1.exon6;Parent=MS.gene35003.t1 |
| 33316 | CDS | 6018 | 6060 | 6018 | ID=cds.MS.gene35003.t1;Parent=MS.gene35003.t1 |
| 33316 | exon | 6226 | 6291 | 6226 | ID=MS.gene35003.t1.exon7;Parent=MS.gene35003.t1 |
| 33316 | CDS | 6226 | 6291 | 6226 | ID=cds.MS.gene35003.t1;Parent=MS.gene35003.t1 |
| 33316 | exon | 7128 | 7317 | 7128 | ID=MS.gene35003.t1.exon8;Parent=MS.gene35003.t1 |
| 33316 | CDS | 7128 | 7317 | 7128 | ID=cds.MS.gene35003.t1;Parent=MS.gene35003.t1 |
| Gene Sequence |
| Protein sequence |
