Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37559.t1 | XP_013444953.1 | 82.2 | 437 | 69 | 3 | 1 | 436 | 1 | 429 | 5.20E-173 | 617.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37559.t1 | A0A072TQ72 | 82.2 | 437 | 69 | 3 | 1 | 436 | 1 | 429 | 3.8e-173 | 617.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene37559 | 0.836397 | 9.59E-57 | -1.69E-46 |
| MS.gene050586 | MS.gene37559 | 0.811033 | 8.57E-51 | -1.69E-46 |
| MS.gene051577 | MS.gene37559 | 0.815924 | 7.20E-52 | -1.69E-46 |
| MS.gene052397 | MS.gene37559 | 0.807148 | 5.82E-50 | -1.69E-46 |
| MS.gene052665 | MS.gene37559 | 0.803997 | 2.67E-49 | -1.69E-46 |
| MS.gene052856 | MS.gene37559 | 0.804208 | 2.41E-49 | -1.69E-46 |
| MS.gene052858 | MS.gene37559 | 0.803659 | 3.14E-49 | -1.69E-46 |
| MS.gene052860 | MS.gene37559 | 0.805761 | 1.14E-49 | -1.69E-46 |
| MS.gene053565 | MS.gene37559 | 0.807221 | 5.62E-50 | -1.69E-46 |
| MS.gene05510 | MS.gene37559 | 0.808138 | 3.59E-50 | -1.69E-46 |
| MS.gene056760 | MS.gene37559 | 0.814068 | 1.86E-51 | -1.69E-46 |
| MS.gene057869 | MS.gene37559 | 0.851308 | 9.66E-61 | -1.69E-46 |
| MS.gene058010 | MS.gene37559 | 0.813244 | 2.82E-51 | -1.69E-46 |
| MS.gene059124 | MS.gene37559 | 0.802612 | 5.16E-49 | -1.69E-46 |
| MS.gene059317 | MS.gene37559 | 0.802567 | 5.28E-49 | -1.69E-46 |
| MS.gene059713 | MS.gene37559 | 0.822336 | 2.50E-53 | -1.69E-46 |
| MS.gene060310 | MS.gene37559 | 0.806966 | 6.36E-50 | -1.69E-46 |
| MS.gene060918 | MS.gene37559 | 0.806994 | 6.28E-50 | -1.69E-46 |
| MS.gene060998 | MS.gene37559 | 0.806483 | 8.05E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37559.t1 | MTR_8g032770 | 88.435 | 441 | 36 | 5 | 1 | 437 | 1 | 430 | 0.0 | 707 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37559.t1 | AT4G00770 | 33.042 | 457 | 235 | 21 | 11 | 437 | 1 | 416 | 1.33e-34 | 134 |
Find 78 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCCTTCATCGTTCCTCTTT+TGG | 0.190394 | 8.3:+61001988 | None:intergenic |
| TTAAAATATTCACATGATTC+TGG | 0.219032 | 8.3:+61001686 | None:intergenic |
| CATGAGTTTGAGTTTGAGTT+TGG | 0.226769 | 8.3:+61004040 | None:intergenic |
| GGTGGGAGGCTGCTGCCTGC+TGG | 0.244478 | 8.3:-61003140 | MS.gene37559:intron |
| GAGAAACTTACTTTCAATAT+TGG | 0.253806 | 8.3:+61002715 | None:intergenic |
| GTATTTCGGATGTACATATT+TGG | 0.263649 | 8.3:-61001751 | MS.gene37559:CDS |
| GTGGGAGGCTGCTGCCTGCT+GGG | 0.277413 | 8.3:-61003139 | MS.gene37559:intron |
| AGGAAATCCTTCAACATTCT+TGG | 0.283854 | 8.3:+61004073 | None:intergenic |
| CAATTACTACATATTGTTAA+AGG | 0.287918 | 8.3:-61002098 | MS.gene37559:CDS |
| CTCTTTCACCTTTGCATCGT+TGG | 0.295512 | 8.3:+61003798 | None:intergenic |
| CAGTCCAGTTTCAGTTCTTC+GGG | 0.305819 | 8.3:-61002777 | MS.gene37559:CDS |
| TTGGATGAAAATTTATACTA+TGG | 0.316942 | 8.3:-61002200 | MS.gene37559:CDS |
| ACAGTCCAGTTTCAGTTCTT+CGG | 0.354473 | 8.3:-61002778 | MS.gene37559:CDS |
| ATTCGGTGGCATCGTTCGTT+GGG | 0.357258 | 8.3:-61003482 | MS.gene37559:CDS |
| ATTTGAATGGAGTTGGTAAT+TGG | 0.359397 | 8.3:+61003977 | None:intergenic |
| GCAACCCGAAGAACTGAAAC+TGG | 0.366892 | 8.3:+61002773 | None:intergenic |
| GGAGCTAGATGAGATGGTTA+TGG | 0.368563 | 8.3:-61001829 | MS.gene37559:CDS |
| CGAAAATCAAAAGGTGATAA+TGG | 0.400296 | 8.3:+61003680 | None:intergenic |
| TTTCAATATTGGCTAGGCTT+TGG | 0.406342 | 8.3:+61002726 | None:intergenic |
| AGATGCTTATATCAAGGAAA+TGG | 0.417722 | 8.3:-61001883 | MS.gene37559:CDS |
| CAATGAGAGACATTCATCTA+AGG | 0.425187 | 8.3:+61002220 | None:intergenic |
| TGATGATAACTTGCGTGATA+AGG | 0.429555 | 8.3:+61003838 | None:intergenic |
| GAACGATGAAGGATTTGAGT+TGG | 0.441325 | 8.3:-61001979 | MS.gene37559:CDS |
| TGGGAGGCTGCTGCCTGCTG+GGG | 0.448826 | 8.3:-61003138 | MS.gene37559:intron |
| CATTCTTGGTCTTCTCTCCA+TGG | 0.454188 | 8.3:+61004087 | None:intergenic |
| TAATGAAAATTGCTGAGGAT+TGG | 0.457153 | 8.3:-61001953 | MS.gene37559:CDS |
| CTTAGATGAATGTCTCTCAT+TGG | 0.457276 | 8.3:-61002219 | MS.gene37559:CDS |
| CTGGACTGTGTTGTTCATCT+TGG | 0.457314 | 8.3:+61002792 | None:intergenic |
| TGAGATGGTTATGGAGATTG+AGG | 0.463953 | 8.3:-61001820 | MS.gene37559:CDS |
| TTGAGTTTGGATTCTCACTT+AGG | 0.467775 | 8.3:+61004053 | None:intergenic |
| TGATGAGGAGCTAGATGAGA+TGG | 0.470146 | 8.3:-61001835 | MS.gene37559:CDS |
| AAGGAAATGGATAGGAGAGA+TGG | 0.470909 | 8.3:-61001870 | MS.gene37559:CDS |
| GATTCGGTGGCATCGTTCGT+TGG | 0.482415 | 8.3:-61003483 | MS.gene37559:CDS |
| GGCATCGTTCGTTGGGGACA+AGG | 0.488211 | 8.3:-61003475 | MS.gene37559:intron |
| TGGTAGTGAGAGGATGGTGG+AGG | 0.494083 | 8.3:+61003865 | None:intergenic |
| AAAGGTGATAATGGCGGTGA+TGG | 0.497649 | 8.3:+61003689 | None:intergenic |
| TCAAACTCATGTTCTTCAAG+TGG | 0.511370 | 8.3:-61004028 | MS.gene37559:CDS |
| AGAACATAAAGACGTTGATA+AGG | 0.513136 | 8.3:-61002174 | MS.gene37559:CDS |
| ATAGGAGAGATGGGTGGAGT+AGG | 0.513651 | 8.3:-61001860 | MS.gene37559:CDS |
| TGAAGAAGAAGTTTGGATTG+AGG | 0.513683 | 8.3:-61002132 | MS.gene37559:CDS |
| GAGAAGACCAAGAATGTTGA+AGG | 0.515311 | 8.3:-61004080 | MS.gene37559:CDS |
| AGGAAATGGATAGGAGAGAT+GGG | 0.519654 | 8.3:-61001869 | MS.gene37559:CDS |
| CTCTATACAACTGCCCCAGC+AGG | 0.520536 | 8.3:+61003125 | None:intergenic |
| GTAGTGACGGTGATTCTAGT+TGG | 0.528108 | 8.3:-61003601 | MS.gene37559:CDS |
| GGTTCGTGGTAGTGAGAGGA+TGG | 0.528255 | 8.3:+61003859 | None:intergenic |
| ACTTACTTTCAATATTGGCT+AGG | 0.530778 | 8.3:+61002720 | None:intergenic |
| AACCAAAAGAGGAACGATGA+AGG | 0.540411 | 8.3:-61001990 | MS.gene37559:CDS |
| ACAAAACGCCGAAAATCAAA+AGG | 0.540830 | 8.3:+61003671 | None:intergenic |
| TCGTGGTAGTGAGAGGATGG+TGG | 0.542013 | 8.3:+61003862 | None:intergenic |
| TAATAAAGATGCTTATATCA+AGG | 0.544634 | 8.3:-61001889 | MS.gene37559:CDS |
| ATGTGTGTGGTGGATTTGAA+TGG | 0.561044 | 8.3:+61003964 | None:intergenic |
| GACATTCATCTAAGGTTACC+AGG | 0.562283 | 8.3:+61002228 | None:intergenic |
| GTGGTGGATTTGAATGGAGT+TGG | 0.563939 | 8.3:+61003970 | None:intergenic |
| TAAAGACGTTGATAAGGAAG+AGG | 0.565135 | 8.3:-61002168 | MS.gene37559:CDS |
| AACTTGCGTGATAAGGTTCG+TGG | 0.577209 | 8.3:+61003845 | None:intergenic |
| TGGTTGTTGTATATCTCGAA+AGG | 0.580810 | 8.3:+61003721 | None:intergenic |
| TGGGTGGAGTAGGTTTGATG+AGG | 0.582244 | 8.3:-61001850 | MS.gene37559:CDS |
| CTTATATCAAGGAAATGGAT+AGG | 0.583522 | 8.3:-61001878 | MS.gene37559:CDS |
| AACGACGACGTTGAAGAGAG+TGG | 0.586326 | 8.3:-61003539 | MS.gene37559:CDS |
| GGAGATAATGAAAATTGCTG+AGG | 0.596531 | 8.3:-61001958 | MS.gene37559:CDS |
| AGAACAAGCCAACGATGCAA+AGG | 0.601818 | 8.3:-61003806 | MS.gene37559:CDS |
| TTCGGTGGCATCGTTCGTTG+GGG | 0.604188 | 8.3:-61003481 | MS.gene37559:CDS |
| GGTAGTGAGAGGATGGTGGA+GGG | 0.606737 | 8.3:+61003866 | None:intergenic |
| AGACGTTGATAAGGAAGAGG+AGG | 0.608676 | 8.3:-61002165 | MS.gene37559:CDS |
| GTGGTAATAGAAACCAAAAG+AGG | 0.617558 | 8.3:-61002001 | MS.gene37559:CDS |
| ATGATGATGAATGTGTGTGG+TGG | 0.618975 | 8.3:+61003954 | None:intergenic |
| GGCGGTGATGGAATCGTCGA+TGG | 0.622472 | 8.3:+61003701 | None:intergenic |
| GAGTCATGCAAAATTTGACC+TGG | 0.623513 | 8.3:-61002246 | MS.gene37559:CDS |
| ATAAGGTTCGTGGTAGTGAG+AGG | 0.628338 | 8.3:+61003855 | None:intergenic |
| AATCGAAATCGAAACCAGCA+CGG | 0.630644 | 8.3:-61003774 | MS.gene37559:CDS |
| ACTACTGCAACGACTTGTTG+TGG | 0.645608 | 8.3:-61003629 | MS.gene37559:CDS |
| AAATGGATAGGAGAGATGGG+TGG | 0.646442 | 8.3:-61001866 | MS.gene37559:CDS |
| AAATCAAAGACATCATACGT+TGG | 0.656713 | 8.3:-61003748 | MS.gene37559:CDS |
| ATGATGATGATGAATGTGTG+TGG | 0.676872 | 8.3:+61003951 | None:intergenic |
| ACAAAGAAGATTCAACACCA+TGG | 0.680203 | 8.3:-61004104 | MS.gene37559:CDS |
| GGTGATTCTAGTTGGAGTGA+CGG | 0.694849 | 8.3:-61003593 | MS.gene37559:CDS |
| AAATCAAAAGGTGATAATGG+CGG | 0.694984 | 8.3:+61003683 | None:intergenic |
| TGTTGTGGTAGTAGTAGTGA+CGG | 0.703793 | 8.3:-61003614 | MS.gene37559:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCATAAAACAAAATAATTTA+TGG | - | chr8.3:61002749-61002768 | MS.gene37559:CDS | 10.0% |
| !! | TTATATTAAAGAAATAATGA+TGG | - | chr8.3:61002608-61002627 | MS.gene37559:intron | 10.0% |
| !!! | GTTAATTTAATTTAATTGAA+AGG | + | chr8.3:61003120-61003139 | None:intergenic | 10.0% |
| !! | AAAAAATAACATTGTTAGTT+TGG | + | chr8.3:61002911-61002930 | None:intergenic | 15.0% |
| !! | AATATTCTATCATATTCTAT+TGG | + | chr8.3:61002473-61002492 | None:intergenic | 15.0% |
| !! | ATTTGTGTTCTAATAATTTA+TGG | - | chr8.3:61002719-61002738 | MS.gene37559:intron | 15.0% |
| !! | TAGAATATGATAGAATATTA+TGG | - | chr8.3:61002474-61002493 | MS.gene37559:intron | 15.0% |
| !! | TTCTTTATAGAAAAAAACAA+TGG | - | chr8.3:61002411-61002430 | MS.gene37559:intron | 15.0% |
| !!! | ACTTATTTTATTTTTTCTGT+CGG | - | chr8.3:61002649-61002668 | MS.gene37559:intron | 15.0% |
| !!! | GTTTTTTATGGTTTTTATTA+GGG | + | chr8.3:61001897-61001916 | None:intergenic | 15.0% |
| !!! | TACTAATAATGTTTGATTTT+TGG | - | chr8.3:61003496-61003515 | MS.gene37559:CDS | 15.0% |
| !! | AAATTGTTAAATGTCTTGAT+TGG | + | chr8.3:61003373-61003392 | None:intergenic | 20.0% |
| !! | AACTATAGTGCATAAAATAT+AGG | + | chr8.3:61002439-61002458 | None:intergenic | 20.0% |
| !! | CAATTACTACATATTGTTAA+AGG | - | chr8.3:61003712-61003731 | MS.gene37559:CDS | 20.0% |
| !! | TAATAAAGATGCTTATATCA+AGG | - | chr8.3:61003921-61003940 | MS.gene37559:CDS | 20.0% |
| !! | TACAAAATTACTAATTGTGT+TGG | + | chr8.3:61003169-61003188 | None:intergenic | 20.0% |
| !! | TTGGATGAAAATTTATACTA+TGG | - | chr8.3:61003610-61003629 | MS.gene37559:CDS | 20.0% |
| !!! | ATTGTTTCTTCTTTTTTTGT+CGG | - | chr8.3:61002300-61002319 | MS.gene37559:intron | 20.0% |
| !!! | CGTTTTTTATGGTTTTTATT+AGG | + | chr8.3:61001898-61001917 | None:intergenic | 20.0% |
| ! | AAAAAACTGAAGAAGAAGTT+TGG | - | chr8.3:61003671-61003690 | MS.gene37559:CDS | 25.0% |
| ! | ACATTAGATACAATATGTGT+CGG | + | chr8.3:61003288-61003307 | None:intergenic | 25.0% |
| ! | GAGAAACTTACTTTCAATAT+TGG | + | chr8.3:61003098-61003117 | None:intergenic | 25.0% |
| ! | TCTAATAATGCATAACACAT+TGG | + | chr8.3:61003142-61003161 | None:intergenic | 25.0% |
| !! | AAATAACATTGTTAGTTTGG+TGG | + | chr8.3:61002908-61002927 | None:intergenic | 25.0% |
| !! | AAATTACTAATTGTGTTGGT+TGG | + | chr8.3:61003165-61003184 | None:intergenic | 25.0% |
| !!! | AAACTTCTTCTTCAGTTTTT+TGG | + | chr8.3:61003672-61003691 | None:intergenic | 25.0% |
| !!! | AATGTTTGATTTTTGGAACA+GGG | - | chr8.3:61003503-61003522 | MS.gene37559:CDS | 25.0% |
| !!! | AATTTGTTTTCTTTGAAGCA+CGG | + | chr8.3:61003323-61003342 | None:intergenic | 25.0% |
| !!! | ATTTTATTTTTTCTGTCGGT+GGG | - | chr8.3:61002653-61002672 | MS.gene37559:intron | 25.0% |
| !!! | CATTATCACCTTTTGATTTT+CGG | - | chr8.3:61002131-61002150 | MS.gene37559:CDS | 25.0% |
| !!! | GTAATTGGTTTTATTGTTCT+TGG | + | chr8.3:61001821-61001840 | None:intergenic | 25.0% |
| !!! | TAATGTTTGATTTTTGGAAC+AGG | - | chr8.3:61003502-61003521 | MS.gene37559:CDS | 25.0% |
| !!! | TATTTTATTTTTTCTGTCGG+TGG | - | chr8.3:61002652-61002671 | MS.gene37559:intron | 25.0% |
| !!! | TGATTTTTTTAGTGAGTTGT+GGG | - | chr8.3:61002240-61002259 | MS.gene37559:CDS | 25.0% |
| AAATCAAAGACATCATACGT+TGG | - | chr8.3:61002062-61002081 | MS.gene37559:CDS | 30.0% | |
| AGAACATAAAGACGTTGATA+AGG | - | chr8.3:61003636-61003655 | MS.gene37559:CDS | 30.0% | |
| AGACATTTAACAATTTCCGT+TGG | - | chr8.3:61003377-61003396 | MS.gene37559:intron | 30.0% | |
| AGATGCTTATATCAAGGAAA+TGG | - | chr8.3:61003927-61003946 | MS.gene37559:CDS | 30.0% | |
| CATAGCATAAGATAATCCAA+CGG | + | chr8.3:61003396-61003415 | None:intergenic | 30.0% | |
| CGAAAATCAAAAGGTGATAA+TGG | + | chr8.3:61002133-61002152 | None:intergenic | 30.0% | |
| CTTATATCAAGGAAATGGAT+AGG | - | chr8.3:61003932-61003951 | MS.gene37559:CDS | 30.0% | |
| GTATTTCGGATGTACATATT+TGG | - | chr8.3:61004059-61004078 | MS.gene37559:CDS | 30.0% | |
| TAATGAAAATTGCTGAGGAT+TGG | - | chr8.3:61003857-61003876 | MS.gene37559:CDS | 30.0% | |
| ! | ACTTACTTTCAATATTGGCT+AGG | + | chr8.3:61003093-61003112 | None:intergenic | 30.0% |
| ! | TAACATCTAACGTTGCTATT+GGG | - | chr8.3:61002939-61002958 | MS.gene37559:intron | 30.0% |
| ! | TGTACATCCGAAATACTTTT+TGG | + | chr8.3:61004055-61004074 | None:intergenic | 30.0% |
| !! | AAATCAAAAGGTGATAATGG+CGG | + | chr8.3:61002130-61002149 | None:intergenic | 30.0% |
| !! | ATTTGAATGGAGTTGGTAAT+TGG | + | chr8.3:61001836-61001855 | None:intergenic | 30.0% |
| !! | GTACATCCGAAATACTTTTT+GGG | + | chr8.3:61004054-61004073 | None:intergenic | 30.0% |
| !! | TACATCCGAAATACTTTTTG+GGG | + | chr8.3:61004053-61004072 | None:intergenic | 30.0% |
| !! | TTTCACCCCAAAAAGTATTT+CGG | - | chr8.3:61004045-61004064 | MS.gene37559:CDS | 30.0% |
| !!! | GAAGAATGTGACGTTTTTTA+TGG | + | chr8.3:61001909-61001928 | None:intergenic | 30.0% |
| !!! | GTGATTTTTTTAGTGAGTTG+TGG | - | chr8.3:61002239-61002258 | MS.gene37559:CDS | 30.0% |
| !!! | TTTTTTTGTCGGCAAAGATT+CGG | - | chr8.3:61002311-61002330 | MS.gene37559:intron | 30.0% |
| AACCTGTATGTAATCTTGAC+AGG | - | chr8.3:61002982-61003001 | MS.gene37559:intron | 35.0% | |
| ACAAAACGCCGAAAATCAAA+AGG | + | chr8.3:61002142-61002161 | None:intergenic | 35.0% | |
| ACAAAGAAGATTCAACACCA+TGG | - | chr8.3:61001706-61001725 | MS.gene37559:CDS | 35.0% | |
| AGGAAATCCTTCAACATTCT+TGG | + | chr8.3:61001740-61001759 | None:intergenic | 35.0% | |
| ATCCTGTCAAGATTACATAC+AGG | + | chr8.3:61002987-61003006 | None:intergenic | 35.0% | |
| CAATGAGAGACATTCATCTA+AGG | + | chr8.3:61003593-61003612 | None:intergenic | 35.0% | |
| CTTAGATGAATGTCTCTCAT+TGG | - | chr8.3:61003591-61003610 | MS.gene37559:CDS | 35.0% | |
| GGAGATAATGAAAATTGCTG+AGG | - | chr8.3:61003852-61003871 | MS.gene37559:CDS | 35.0% | |
| GTAACATCTAACGTTGCTAT+TGG | - | chr8.3:61002938-61002957 | MS.gene37559:intron | 35.0% | |
| GTGGTAATAGAAACCAAAAG+AGG | - | chr8.3:61003809-61003828 | MS.gene37559:CDS | 35.0% | |
| TCAAACTCATGTTCTTCAAG+TGG | - | chr8.3:61001782-61001801 | MS.gene37559:CDS | 35.0% | |
| TGAAGAAGAAGTTTGGATTG+AGG | - | chr8.3:61003678-61003697 | MS.gene37559:CDS | 35.0% | |
| TGGTTGTTGTATATCTCGAA+AGG | + | chr8.3:61002092-61002111 | None:intergenic | 35.0% | |
| TTGAGTTTGGATTCTCACTT+AGG | + | chr8.3:61001760-61001779 | None:intergenic | 35.0% | |
| ! | AGTTCTGCTGGAATTTTTCA+AGG | - | chr8.3:61003777-61003796 | MS.gene37559:CDS | 35.0% |
| ! | ATGATGATGATGAATGTGTG+TGG | + | chr8.3:61001862-61001881 | None:intergenic | 35.0% |
| ! | CATGAGTTTGAGTTTGAGTT+TGG | + | chr8.3:61001773-61001792 | None:intergenic | 35.0% |
| ! | TAAAGACGTTGATAAGGAAG+AGG | - | chr8.3:61003642-61003661 | MS.gene37559:CDS | 35.0% |
| ! | TGATGATAACTTGCGTGATA+AGG | + | chr8.3:61001975-61001994 | None:intergenic | 35.0% |
| ! | TTTCAATATTGGCTAGGCTT+TGG | + | chr8.3:61003087-61003106 | None:intergenic | 35.0% |
| !! | CAATTTTGATACAGTTCTGC+TGG | - | chr8.3:61003765-61003784 | MS.gene37559:CDS | 35.0% |
| !!! | TTTTCTTTGAAGCACGGATA+CGG | + | chr8.3:61003317-61003336 | None:intergenic | 35.0% |
| !!! | TTTTTCAAGGAAGAGCTAAG+TGG | - | chr8.3:61003790-61003809 | MS.gene37559:CDS | 35.0% |
| AACCAAAAGAGGAACGATGA+AGG | - | chr8.3:61003820-61003839 | MS.gene37559:CDS | 40.0% | |
| AAGGAAATGGATAGGAGAGA+TGG | - | chr8.3:61003940-61003959 | MS.gene37559:CDS | 40.0% | |
| AATCGAAATCGAAACCAGCA+CGG | - | chr8.3:61002036-61002055 | MS.gene37559:CDS | 40.0% | |
| AATTAGGCATGTCCCAGTAT+AGG | - | chr8.3:61003233-61003252 | MS.gene37559:intron | 40.0% | |
| ACAGTCCAGTTTCAGTTCTT+CGG | - | chr8.3:61003032-61003051 | MS.gene37559:intron | 40.0% | |
| AGGAAATGGATAGGAGAGAT+GGG | - | chr8.3:61003941-61003960 | MS.gene37559:CDS | 40.0% | |
| GAACGATGAAGGATTTGAGT+TGG | - | chr8.3:61003831-61003850 | MS.gene37559:CDS | 40.0% | |
| GAGAAGACCAAGAATGTTGA+AGG | - | chr8.3:61001730-61001749 | MS.gene37559:CDS | 40.0% | |
| GAGTCATGCAAAATTTGACC+TGG | - | chr8.3:61003564-61003583 | MS.gene37559:CDS | 40.0% | |
| GCACGAACACTTCTCAAATT+AGG | - | chr8.3:61003217-61003236 | MS.gene37559:intron | 40.0% | |
| TGAGATGGTTATGGAGATTG+AGG | - | chr8.3:61003990-61004009 | MS.gene37559:CDS | 40.0% | |
| TGTTGTGGTAGTAGTAGTGA+CGG | - | chr8.3:61002196-61002215 | MS.gene37559:CDS | 40.0% | |
| ! | ATCCTTCATCGTTCCTCTTT+TGG | + | chr8.3:61003825-61003844 | None:intergenic | 40.0% |
| ! | ATGATGATGAATGTGTGTGG+TGG | + | chr8.3:61001859-61001878 | None:intergenic | 40.0% |
| ! | CATTGTTAGTTTGGTGGCAA+AGG | + | chr8.3:61002902-61002921 | None:intergenic | 40.0% |
| ! | GACATTCATCTAAGGTTACC+AGG | + | chr8.3:61003585-61003604 | None:intergenic | 40.0% |
| ! | TGATTTTCGGCGTTTTGTGA+CGG | - | chr8.3:61002144-61002163 | MS.gene37559:CDS | 40.0% |
| !! | AACGCAGTTTTTGTGCTGTT+TGG | - | chr8.3:61004091-61004110 | MS.gene37559:CDS | 40.0% |
| !! | ATGTGTGTGGTGGATTTGAA+TGG | + | chr8.3:61001849-61001868 | None:intergenic | 40.0% |
| !!! | TTATTTTTTCTGTCGGTGGG+AGG | - | chr8.3:61002656-61002675 | MS.gene37559:intron | 40.0% |
| AAATGGATAGGAGAGATGGG+TGG | - | chr8.3:61003944-61003963 | MS.gene37559:CDS | 45.0% | |
| AACTTGCGTGATAAGGTTCG+TGG | + | chr8.3:61001968-61001987 | None:intergenic | 45.0% | |
| AGAACAAGCCAACGATGCAA+AGG | - | chr8.3:61002004-61002023 | MS.gene37559:CDS | 45.0% | |
| CAGTCCAGTTTCAGTTCTTC+GGG | - | chr8.3:61003033-61003052 | MS.gene37559:intron | 45.0% | |
| CTCTTTCACCTTTGCATCGT+TGG | + | chr8.3:61002015-61002034 | None:intergenic | 45.0% | |
| GGAGCTAGATGAGATGGTTA+TGG | - | chr8.3:61003981-61004000 | MS.gene37559:CDS | 45.0% | |
| GTAGTGACGGTGATTCTAGT+TGG | - | chr8.3:61002209-61002228 | MS.gene37559:CDS | 45.0% | |
| TGATGAGGAGCTAGATGAGA+TGG | - | chr8.3:61003975-61003994 | MS.gene37559:CDS | 45.0% | |
| ! | AGACGTTGATAAGGAAGAGG+AGG | - | chr8.3:61003645-61003664 | MS.gene37559:CDS | 45.0% |
| ! | ATAAGGTTCGTGGTAGTGAG+AGG | + | chr8.3:61001958-61001977 | None:intergenic | 45.0% |
| ! | CATTCTTGGTCTTCTCTCCA+TGG | + | chr8.3:61001726-61001745 | None:intergenic | 45.0% |
| ! | CTGGACTGTGTTGTTCATCT+TGG | + | chr8.3:61003021-61003040 | None:intergenic | 45.0% |
| ! | GGTGATTCTAGTTGGAGTGA+CGG | - | chr8.3:61002217-61002236 | MS.gene37559:CDS | 45.0% |
| ! | TTTTGTCGGCAAAGATTCGG+TGG | - | chr8.3:61002314-61002333 | MS.gene37559:intron | 45.0% |
| !! | AAAGGTGATAATGGCGGTGA+TGG | + | chr8.3:61002124-61002143 | None:intergenic | 45.0% |
| !! | ACTACTGCAACGACTTGTTG+TGG | - | chr8.3:61002181-61002200 | MS.gene37559:CDS | 45.0% |
| !! | GTCTTTGATTTTCACCGTGC+TGG | + | chr8.3:61002053-61002072 | None:intergenic | 45.0% |
| !! | GTGGTGGATTTGAATGGAGT+TGG | + | chr8.3:61001843-61001862 | None:intergenic | 45.0% |
| !! | TTTTGTGACGGAATCGTCGA+CGG | - | chr8.3:61002156-61002175 | MS.gene37559:CDS | 45.0% |
| !! | TATTTAATTAAATTAAGTAT+AGG | - | chr8.3:61002500-61002519 | MS.gene37559:intron | 5.0% |
| AACGACGACGTTGAAGAGAG+TGG | - | chr8.3:61002271-61002290 | MS.gene37559:CDS | 50.0% | |
| ACACGACACGTGTCCTATAC+TGG | + | chr8.3:61003249-61003268 | None:intergenic | 50.0% | |
| ATAGGAGAGATGGGTGGAGT+AGG | - | chr8.3:61003950-61003969 | MS.gene37559:CDS | 50.0% | |
| CACGACACGTGTCCTATACT+GGG | + | chr8.3:61003248-61003267 | None:intergenic | 50.0% | |
| GCAACCCGAAGAACTGAAAC+TGG | + | chr8.3:61003040-61003059 | None:intergenic | 50.0% | |
| TGGGTGGAGTAGGTTTGATG+AGG | - | chr8.3:61003960-61003979 | MS.gene37559:CDS | 50.0% | |
| ! | ATTCGGTGGCATCGTTCGTT+GGG | - | chr8.3:61002328-61002347 | MS.gene37559:intron | 50.0% |
| CTCTATACAACTGCCCCAGC+AGG | + | chr8.3:61002688-61002707 | None:intergenic | 55.0% | |
| TTCGGTGGCATCGTTCGTTG+GGG | - | chr8.3:61002329-61002348 | MS.gene37559:intron | 55.0% | |
| ! | GGTTCGTGGTAGTGAGAGGA+TGG | + | chr8.3:61001954-61001973 | None:intergenic | 55.0% |
| ! | TCGTGGTAGTGAGAGGATGG+TGG | + | chr8.3:61001951-61001970 | None:intergenic | 55.0% |
| ! | TGGTAGTGAGAGGATGGTGG+AGG | + | chr8.3:61001948-61001967 | None:intergenic | 55.0% |
| !! | GATTCGGTGGCATCGTTCGT+TGG | - | chr8.3:61002327-61002346 | MS.gene37559:intron | 55.0% |
| !! | GGTAGTGAGAGGATGGTGGA+GGG | + | chr8.3:61001947-61001966 | None:intergenic | 55.0% |
| GGCATCGTTCGTTGGGGACA+AGG | - | chr8.3:61002335-61002354 | MS.gene37559:intron | 60.0% | |
| !! | GGCGGTGATGGAATCGTCGA+TGG | + | chr8.3:61002112-61002131 | None:intergenic | 60.0% |
| GTGGGAGGCTGCTGCCTGCT+GGG | - | chr8.3:61002671-61002690 | MS.gene37559:intron | 70.0% | |
| TGGGAGGCTGCTGCCTGCTG+GGG | - | chr8.3:61002672-61002691 | MS.gene37559:intron | 70.0% | |
| GGTGGGAGGCTGCTGCCTGC+TGG | - | chr8.3:61002670-61002689 | MS.gene37559:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 61001695 | 61004137 | 61001695 | ID=MS.gene37559 |
| chr8.3 | mRNA | 61001695 | 61004137 | 61001695 | ID=MS.gene37559.t1;Parent=MS.gene37559 |
| chr8.3 | exon | 61003476 | 61004137 | 61003476 | ID=MS.gene37559.t1.exon1;Parent=MS.gene37559.t1 |
| chr8.3 | CDS | 61003476 | 61004137 | 61003476 | ID=cds.MS.gene37559.t1;Parent=MS.gene37559.t1 |
| chr8.3 | exon | 61003133 | 61003154 | 61003133 | ID=MS.gene37559.t1.exon2;Parent=MS.gene37559.t1 |
| chr8.3 | CDS | 61003133 | 61003154 | 61003133 | ID=cds.MS.gene37559.t1;Parent=MS.gene37559.t1 |
| chr8.3 | exon | 61002726 | 61002828 | 61002726 | ID=MS.gene37559.t1.exon3;Parent=MS.gene37559.t1 |
| chr8.3 | CDS | 61002726 | 61002828 | 61002726 | ID=cds.MS.gene37559.t1;Parent=MS.gene37559.t1 |
| chr8.3 | exon | 61001695 | 61002308 | 61001695 | ID=MS.gene37559.t1.exon4;Parent=MS.gene37559.t1 |
| chr8.3 | CDS | 61001695 | 61002308 | 61001695 | ID=cds.MS.gene37559.t1;Parent=MS.gene37559.t1 |
| Gene Sequence |
| Protein sequence |
