Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene39712.t1 | XP_003626737.1 | 93 | 258 | 18 | 0 | 1 | 258 | 1 | 258 | 2.10E-132 | 482.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene39712.t1 | Q8S9K8 | 41.4 | 227 | 130 | 2 | 27 | 253 | 21 | 244 | 8.2e-45 | 183.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene39712.t1 | G7LBP1 | 93.0 | 258 | 18 | 0 | 1 | 258 | 1 | 258 | 1.5e-132 | 482.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049549 | MS.gene39712 | 0.856907 | 2.34E-62 | -1.69E-46 |
MS.gene051131 | MS.gene39712 | 0.813613 | 2.34E-51 | -1.69E-46 |
MS.gene052211 | MS.gene39712 | 0.819431 | 1.17E-52 | -1.69E-46 |
MS.gene05240 | MS.gene39712 | 0.827552 | 1.47E-54 | -1.69E-46 |
MS.gene053406 | MS.gene39712 | 0.810066 | 1.39E-50 | -1.69E-46 |
MS.gene053887 | MS.gene39712 | 0.801852 | 7.40E-49 | -1.69E-46 |
MS.gene054146 | MS.gene39712 | 0.807284 | 5.45E-50 | -1.69E-46 |
MS.gene054277 | MS.gene39712 | 0.830035 | 3.68E-55 | -1.69E-46 |
MS.gene054742 | MS.gene39712 | 0.803293 | 3.74E-49 | -1.69E-46 |
MS.gene055240 | MS.gene39712 | 0.81793 | 2.55E-52 | -1.69E-46 |
MS.gene056748 | MS.gene39712 | 0.807606 | 4.66E-50 | -1.69E-46 |
MS.gene056856 | MS.gene39712 | 0.800145 | 1.65E-48 | -1.69E-46 |
MS.gene058603 | MS.gene39712 | 0.834965 | 2.21E-56 | -1.69E-46 |
MS.gene059953 | MS.gene39712 | 0.808703 | 2.72E-50 | -1.69E-46 |
MS.gene059955 | MS.gene39712 | 0.820993 | 5.11E-53 | -1.69E-46 |
MS.gene060405 | MS.gene39712 | 0.801994 | 6.92E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene39712 | MS.gene010412 | PPI |
MS.gene39712 | MS.gene041151 | PPI |
MS.gene28543 | MS.gene39712 | PPI |
MS.gene39712 | MS.gene011884 | PPI |
MS.gene39712 | MS.gene047689 | PPI |
MS.gene39712 | MS.gene44962 | PPI |
MS.gene87350 | MS.gene39712 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene39712.t1 | MTR_8g008500 | 93.023 | 258 | 18 | 0 | 1 | 258 | 1 | 258 | 1.34e-177 | 499 |
MS.gene39712.t1 | MTR_8g008500 | 65.680 | 169 | 55 | 2 | 309 | 474 | 21 | 189 | 2.31e-71 | 228 |
MS.gene39712.t1 | MTR_8g008505 | 83.012 | 259 | 39 | 3 | 1 | 258 | 1 | 255 | 8.43e-155 | 441 |
MS.gene39712.t1 | MTR_8g008505 | 68.125 | 160 | 50 | 1 | 315 | 474 | 28 | 186 | 8.82e-73 | 232 |
MS.gene39712.t1 | MTR_8g008660 | 77.132 | 258 | 53 | 2 | 1 | 258 | 1 | 252 | 2.10e-141 | 407 |
MS.gene39712.t1 | MTR_8g008660 | 65.060 | 166 | 55 | 1 | 309 | 474 | 21 | 183 | 1.45e-69 | 223 |
MS.gene39712.t1 | MTR_3g464040 | 70.189 | 265 | 66 | 4 | 12 | 276 | 4 | 255 | 2.00e-126 | 369 |
MS.gene39712.t1 | MTR_3g464040 | 66.875 | 160 | 50 | 1 | 315 | 474 | 19 | 175 | 3.12e-69 | 222 |
MS.gene39712.t1 | MTR_8g007675 | 95.679 | 162 | 7 | 0 | 313 | 474 | 30 | 191 | 1.57e-109 | 326 |
MS.gene39712.t1 | MTR_8g007675 | 66.522 | 230 | 74 | 2 | 27 | 256 | 32 | 258 | 9.39e-108 | 322 |
MS.gene39712.t1 | MTR_8g007670 | 55.128 | 234 | 101 | 3 | 26 | 258 | 6 | 236 | 8.59e-86 | 265 |
MS.gene39712.t1 | MTR_8g007670 | 59.036 | 166 | 68 | 0 | 309 | 474 | 1 | 166 | 1.66e-67 | 217 |
MS.gene39712.t1 | MTR_5g018320 | 54.310 | 232 | 102 | 3 | 23 | 253 | 1 | 229 | 2.80e-81 | 253 |
MS.gene39712.t1 | MTR_5g018320 | 56.098 | 164 | 71 | 1 | 312 | 474 | 2 | 165 | 1.32e-62 | 204 |
MS.gene39712.t1 | MTR_5g018300 | 53.275 | 229 | 103 | 3 | 26 | 253 | 7 | 232 | 1.99e-79 | 248 |
MS.gene39712.t1 | MTR_5g018300 | 57.143 | 161 | 68 | 1 | 315 | 474 | 8 | 168 | 2.15e-60 | 199 |
MS.gene39712.t1 | MTR_5g018280 | 52.155 | 232 | 100 | 5 | 26 | 253 | 7 | 231 | 4.41e-75 | 237 |
MS.gene39712.t1 | MTR_5g018280 | 52.795 | 161 | 74 | 2 | 315 | 474 | 8 | 167 | 2.14e-49 | 170 |
MS.gene39712.t1 | MTR_8g007670 | 47.863 | 234 | 74 | 3 | 26 | 258 | 6 | 192 | 5.68e-69 | 219 |
MS.gene39712.t1 | MTR_8g007670 | 62.595 | 131 | 49 | 0 | 309 | 439 | 1 | 131 | 1.56e-53 | 179 |
MS.gene39712.t1 | MTR_8g079120 | 40.175 | 229 | 128 | 5 | 26 | 253 | 10 | 230 | 1.13e-49 | 171 |
MS.gene39712.t1 | MTR_8g079120 | 44.118 | 170 | 89 | 3 | 307 | 474 | 3 | 168 | 2.52e-42 | 151 |
MS.gene39712.t1 | MTR_5g018365 | 40.708 | 226 | 125 | 5 | 26 | 250 | 11 | 228 | 2.20e-48 | 167 |
MS.gene39712.t1 | MTR_5g018365 | 43.931 | 173 | 90 | 4 | 312 | 481 | 9 | 177 | 9.16e-41 | 147 |
MS.gene39712.t1 | MTR_5g018350 | 39.286 | 224 | 129 | 4 | 27 | 250 | 7 | 223 | 4.67e-45 | 158 |
MS.gene39712.t1 | MTR_5g018350 | 44.706 | 170 | 87 | 5 | 315 | 482 | 7 | 171 | 6.05e-38 | 139 |
MS.gene39712.t1 | MTR_8g079120 | 44.444 | 171 | 89 | 3 | 307 | 475 | 45 | 211 | 1.85e-43 | 153 |
MS.gene39712.t1 | MTR_8g079120 | 42.515 | 167 | 91 | 3 | 26 | 192 | 52 | 213 | 2.11e-37 | 137 |
MS.gene39712.t1 | MTR_5g068100 | 38.053 | 226 | 134 | 3 | 26 | 251 | 29 | 248 | 2.02e-42 | 152 |
MS.gene39712.t1 | MTR_5g068100 | 38.509 | 161 | 98 | 1 | 315 | 474 | 30 | 190 | 7.17e-32 | 124 |
MS.gene39712.t1 | MTR_3g093730 | 37.179 | 234 | 135 | 4 | 21 | 251 | 30 | 254 | 1.39e-39 | 145 |
MS.gene39712.t1 | MTR_3g093730 | 34.872 | 195 | 126 | 1 | 281 | 474 | 2 | 196 | 6.27e-34 | 129 |
MS.gene39712.t1 | MTR_7g015220 | 36.000 | 225 | 138 | 3 | 27 | 251 | 124 | 342 | 2.18e-36 | 138 |
MS.gene39712.t1 | MTR_7g015220 | 39.394 | 165 | 97 | 2 | 312 | 474 | 121 | 284 | 1.34e-32 | 128 |
MS.gene39712.t1 | MTR_3g005410 | 30.342 | 234 | 156 | 3 | 19 | 251 | 86 | 313 | 1.25e-32 | 127 |
MS.gene39712.t1 | MTR_3g005410 | 33.526 | 173 | 113 | 1 | 312 | 482 | 91 | 263 | 1.64e-27 | 113 |
MS.gene39712.t1 | MTR_3g093730 | 34.591 | 159 | 104 | 0 | 281 | 439 | 2 | 160 | 8.83e-29 | 114 |
MS.gene39712.t1 | MTR_3g093730 | 32.353 | 238 | 96 | 6 | 21 | 251 | 30 | 209 | 3.02e-27 | 110 |
MS.gene39712.t1 | MTR_5g008130 | 73.913 | 46 | 12 | 0 | 206 | 251 | 2 | 47 | 5.74e-18 | 79.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene39712.t1 | AT3G50440 | 41.150 | 226 | 130 | 2 | 28 | 253 | 22 | 244 | 3.79e-55 | 186 |
MS.gene39712.t1 | AT3G50440 | 48.235 | 170 | 83 | 2 | 316 | 480 | 22 | 191 | 7.89e-47 | 164 |
MS.gene39712.t1 | AT2G23600 | 43.556 | 225 | 116 | 4 | 26 | 246 | 8 | 225 | 4.81e-52 | 177 |
MS.gene39712.t1 | AT2G23600 | 44.172 | 163 | 87 | 3 | 315 | 474 | 9 | 170 | 9.12e-39 | 142 |
MS.gene39712.t1 | AT2G23600 | 43.556 | 225 | 116 | 4 | 26 | 246 | 23 | 240 | 4.90e-52 | 177 |
MS.gene39712.t1 | AT2G23600 | 44.172 | 163 | 87 | 3 | 315 | 474 | 24 | 185 | 1.08e-38 | 142 |
MS.gene39712.t1 | AT2G23610 | 41.150 | 226 | 130 | 2 | 26 | 251 | 8 | 230 | 6.83e-51 | 174 |
MS.gene39712.t1 | AT2G23610 | 46.914 | 162 | 80 | 4 | 315 | 472 | 9 | 168 | 1.35e-41 | 149 |
MS.gene39712.t1 | AT2G23620 | 40.726 | 248 | 127 | 5 | 26 | 262 | 8 | 246 | 2.17e-50 | 172 |
MS.gene39712.t1 | AT2G23620 | 43.976 | 166 | 89 | 3 | 312 | 474 | 6 | 170 | 1.30e-39 | 144 |
MS.gene39712.t1 | AT2G23590 | 40.239 | 251 | 138 | 6 | 1 | 251 | 1 | 239 | 9.43e-49 | 169 |
MS.gene39712.t1 | AT2G23590 | 38.172 | 186 | 101 | 5 | 299 | 481 | 13 | 187 | 1.92e-34 | 130 |
MS.gene39712.t1 | AT2G23580 | 39.689 | 257 | 138 | 10 | 24 | 272 | 5 | 252 | 7.43e-48 | 166 |
MS.gene39712.t1 | AT2G23580 | 42.353 | 170 | 94 | 3 | 316 | 481 | 9 | 178 | 1.98e-36 | 135 |
MS.gene39712.t1 | AT1G33990 | 34.348 | 230 | 138 | 4 | 26 | 251 | 96 | 316 | 3.88e-41 | 150 |
MS.gene39712.t1 | AT1G33990 | 35.979 | 189 | 115 | 4 | 296 | 482 | 82 | 266 | 1.29e-29 | 119 |
MS.gene39712.t1 | AT4G16690 | 35.600 | 250 | 135 | 8 | 27 | 263 | 12 | 248 | 1.06e-40 | 147 |
MS.gene39712.t1 | AT4G16690 | 39.157 | 166 | 87 | 2 | 315 | 474 | 12 | 169 | 9.40e-32 | 123 |
MS.gene39712.t1 | AT3G10870 | 36.444 | 225 | 141 | 2 | 27 | 251 | 20 | 242 | 1.80e-40 | 147 |
MS.gene39712.t1 | AT3G10870 | 37.888 | 161 | 99 | 1 | 315 | 474 | 20 | 180 | 3.17e-33 | 127 |
MS.gene39712.t1 | AT4G37150 | 37.946 | 224 | 135 | 3 | 26 | 249 | 2 | 221 | 2.55e-40 | 145 |
MS.gene39712.t1 | AT4G37150 | 38.889 | 162 | 96 | 2 | 315 | 474 | 3 | 163 | 9.25e-34 | 128 |
MS.gene39712.t1 | AT2G23600 | 44.512 | 164 | 87 | 3 | 315 | 475 | 24 | 186 | 2.84e-40 | 143 |
MS.gene39712.t1 | AT2G23600 | 45.238 | 168 | 83 | 3 | 26 | 189 | 23 | 185 | 4.09e-40 | 143 |
MS.gene39712.t1 | AT2G23550 | 36.992 | 246 | 140 | 8 | 24 | 264 | 12 | 247 | 9.70e-40 | 145 |
MS.gene39712.t1 | AT2G23550 | 44.099 | 161 | 85 | 3 | 316 | 472 | 16 | 175 | 2.37e-36 | 135 |
MS.gene39712.t1 | AT2G23550 | 36.992 | 246 | 140 | 8 | 24 | 264 | 5 | 240 | 1.04e-39 | 144 |
MS.gene39712.t1 | AT2G23550 | 44.099 | 161 | 85 | 3 | 316 | 472 | 9 | 168 | 2.23e-36 | 135 |
MS.gene39712.t1 | AT1G26360 | 37.391 | 230 | 138 | 3 | 22 | 251 | 184 | 407 | 1.27e-39 | 149 |
MS.gene39712.t1 | AT1G26360 | 43.151 | 146 | 82 | 1 | 311 | 455 | 185 | 330 | 5.02e-32 | 127 |
MS.gene39712.t1 | AT2G23560 | 37.946 | 224 | 132 | 5 | 24 | 246 | 5 | 222 | 1.47e-38 | 141 |
MS.gene39712.t1 | AT2G23560 | 42.857 | 161 | 86 | 3 | 315 | 472 | 8 | 165 | 5.00e-38 | 140 |
MS.gene39712.t1 | AT5G58310 | 34.545 | 220 | 136 | 3 | 27 | 242 | 5 | 220 | 1.85e-38 | 141 |
MS.gene39712.t1 | AT5G58310 | 39.766 | 171 | 96 | 2 | 315 | 479 | 5 | 174 | 1.61e-35 | 133 |
MS.gene39712.t1 | AT2G23550 | 43.902 | 164 | 87 | 3 | 316 | 475 | 16 | 178 | 8.03e-38 | 137 |
MS.gene39712.t1 | AT2G23550 | 41.667 | 168 | 90 | 5 | 24 | 187 | 12 | 175 | 1.46e-29 | 115 |
MS.gene39712.t1 | AT4G09900 | 32.068 | 237 | 148 | 4 | 19 | 251 | 90 | 317 | 8.39e-38 | 142 |
MS.gene39712.t1 | AT4G09900 | 34.320 | 169 | 109 | 2 | 316 | 482 | 99 | 267 | 4.04e-29 | 117 |
MS.gene39712.t1 | AT1G69240 | 34.199 | 231 | 146 | 3 | 22 | 251 | 182 | 407 | 1.19e-37 | 143 |
MS.gene39712.t1 | AT1G69240 | 39.456 | 147 | 87 | 1 | 311 | 455 | 183 | 329 | 3.13e-30 | 122 |
MS.gene39712.t1 | AT5G10300 | 36.652 | 221 | 135 | 4 | 27 | 247 | 6 | 221 | 2.51e-37 | 138 |
MS.gene39712.t1 | AT5G10300 | 40.000 | 165 | 99 | 0 | 310 | 474 | 1 | 165 | 6.19e-36 | 134 |
MS.gene39712.t1 | AT5G10300 | 40.361 | 166 | 99 | 0 | 310 | 475 | 1 | 166 | 4.72e-37 | 135 |
MS.gene39712.t1 | AT5G10300 | 40.606 | 165 | 95 | 3 | 27 | 191 | 6 | 167 | 3.12e-30 | 117 |
MS.gene39712.t1 | AT2G23580 | 41.420 | 169 | 96 | 2 | 315 | 480 | 8 | 176 | 6.48e-37 | 135 |
MS.gene39712.t1 | AT2G23580 | 45.509 | 167 | 85 | 6 | 24 | 187 | 5 | 168 | 3.95e-35 | 130 |
MS.gene39712.t1 | AT3G29770 | 38.326 | 227 | 130 | 4 | 27 | 251 | 138 | 356 | 2.71e-36 | 138 |
MS.gene39712.t1 | AT3G29770 | 41.463 | 164 | 95 | 1 | 312 | 474 | 135 | 298 | 1.50e-32 | 128 |
MS.gene39712.t1 | AT2G23610 | 34.956 | 226 | 99 | 3 | 26 | 251 | 8 | 185 | 2.79e-35 | 131 |
MS.gene39712.t1 | AT2G23610 | 55.882 | 102 | 44 | 1 | 315 | 415 | 9 | 110 | 3.28e-34 | 128 |
MS.gene39712.t1 | AT4G37140 | 50.485 | 103 | 51 | 0 | 315 | 417 | 3 | 105 | 1.84e-33 | 123 |
MS.gene39712.t1 | AT4G37140 | 50.476 | 105 | 51 | 1 | 26 | 130 | 2 | 105 | 1.25e-31 | 118 |
MS.gene39712.t1 | AT4G37140 | 48.889 | 90 | 46 | 0 | 315 | 404 | 3 | 92 | 5.68e-29 | 110 |
MS.gene39712.t1 | AT4G37140 | 48.913 | 92 | 46 | 1 | 26 | 117 | 2 | 92 | 1.99e-27 | 105 |
MS.gene39712.t1 | AT2G23550 | 32.653 | 245 | 123 | 7 | 24 | 264 | 5 | 211 | 9.83e-29 | 114 |
MS.gene39712.t1 | AT2G23550 | 36.875 | 160 | 69 | 3 | 316 | 472 | 9 | 139 | 1.51e-23 | 99.4 |
MS.gene39712.t1 | AT3G29770 | 50.000 | 76 | 38 | 0 | 312 | 387 | 135 | 210 | 1.91e-18 | 85.9 |
MS.gene39712.t1 | AT3G29770 | 50.000 | 74 | 36 | 1 | 27 | 100 | 138 | 210 | 6.09e-17 | 81.6 |
MS.gene39712.t1 | AT2G23570 | 31.126 | 151 | 101 | 2 | 105 | 255 | 2 | 149 | 2.32e-12 | 65.9 |
Find 100 sgRNAs with CRISPR-Local
Find 270 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGAACCATTGATGTCATTTA+TGG | 0.077530 | 8.1:+85971166 | MS.gene39712:CDS |
TGAACCTTTGATATCATTTA+TGG | 0.078023 | 8.1:+85967108 | MS.gene39712:CDS |
CCTCCAACTGGCTTGTTATT+TGG | 0.141072 | 8.1:+85967815 | MS.gene39712:CDS |
ATCTTGGATGCCATGAATTT+TGG | 0.212352 | 8.1:-85972313 | None:intergenic |
TAGAAGGATTAGTTCTTTAA+TGG | 0.232720 | 8.1:+85972231 | MS.gene39712:CDS |
TAGACTCAATATTTGAATAT+TGG | 0.243547 | 8.1:+85969516 | MS.gene39712:intron |
ATTCTTGTGGGTCATAGTTT+TGG | 0.257233 | 8.1:+85967157 | MS.gene39712:CDS |
TTAGAGAGGATCTGCAATTA+TGG | 0.262915 | 8.1:+85968529 | MS.gene39712:CDS |
ACAAGAATTAACTTCTCATT+TGG | 0.313936 | 8.1:-85971200 | None:intergenic |
CAGATTGGATGCCAAGAGTT+TGG | 0.316731 | 8.1:-85967840 | None:intergenic |
ATCACTTTCACCTCATCATA+TGG | 0.319123 | 8.1:-85968570 | None:intergenic |
TGAATCTCTTGTACTTGTAT+TGG | 0.323609 | 8.1:-85971125 | None:intergenic |
TTGGAAATAATGAAGACTTT+TGG | 0.329148 | 8.1:-85968492 | None:intergenic |
TGTTCAGAGAAATCTTAATT+AGG | 0.331383 | 8.1:+85969574 | MS.gene39712:CDS |
ACAATTGAATTGGCTGGTTC+AGG | 0.332244 | 8.1:+85971095 | MS.gene39712:CDS |
TATTATCAAAATGTTTAAAC+GGG | 0.343877 | 8.1:+85966856 | None:intergenic |
TACACCTCTGACTCAGGATC+TGG | 0.350436 | 8.1:-85969677 | None:intergenic |
TAATGTTACAACAATTGAAT+TGG | 0.361515 | 8.1:+85971085 | MS.gene39712:CDS |
AATGAGAAGTTAATTCTTGT+TGG | 0.365344 | 8.1:+85971203 | MS.gene39712:CDS |
CAAACCTGCAACTGCTAGAT+TGG | 0.368595 | 8.1:+85972285 | MS.gene39712:CDS |
ATATTATCAAAATGTTTAAA+CGG | 0.371932 | 8.1:+85966855 | None:intergenic |
TCTAATGAAAATGTCTCCTT+TGG | 0.376102 | 8.1:-85968511 | None:intergenic |
CTAGCAGTTGCAGGTTTGTT+GGG | 0.377021 | 8.1:-85972280 | None:intergenic |
AAGCCAGTTGGAGGACTGTT+TGG | 0.386544 | 8.1:-85967806 | None:intergenic |
TACCCTTCCATTCCTCTGCT+TGG | 0.389684 | 8.1:-85968469 | None:intergenic |
CCATCTTGTAGCAAGCTAGA+AGG | 0.392296 | 8.1:+85972215 | MS.gene39712:intron |
AAACACTTTGTGCTTGTTCA+TGG | 0.394728 | 8.1:+85966941 | MS.gene39712:CDS |
TCTAGCAGTTGCAGGTTTGT+TGG | 0.395041 | 8.1:-85972281 | None:intergenic |
TGGTGCATGGTGTTGGTATA+AGG | 0.400591 | 8.1:+85971034 | MS.gene39712:CDS |
ATTACCTCTTGAAGAACAAC+AGG | 0.404228 | 8.1:-85971335 | None:intergenic |
GTGCATGAGTCGACGTCAAT+TGG | 0.405402 | 8.1:+85969617 | MS.gene39712:CDS |
ATTCTTGTTGGTCATAGTCT+TGG | 0.409610 | 8.1:+85971215 | MS.gene39712:CDS |
TGAATCTCTTGAACCTGTAT+TGG | 0.414588 | 8.1:-85967064 | None:intergenic |
CCAACCAATCTAGCAGTTGC+AGG | 0.423936 | 8.1:-85972289 | None:intergenic |
TTTGTGCTTGTTCATGGAGC+TGG | 0.431944 | 8.1:+85966947 | MS.gene39712:CDS |
ATTGGTTGGACCAAAATTCA+TGG | 0.434970 | 8.1:+85972303 | MS.gene39712:CDS |
CTTGTTGGTCATAGTCTTGG+TGG | 0.441219 | 8.1:+85971218 | MS.gene39712:CDS |
GTTACAACAATTGAATTGGC+TGG | 0.460288 | 8.1:+85971089 | MS.gene39712:CDS |
AGGCGATAATTGATACAGAT+TGG | 0.460726 | 8.1:-85967855 | None:intergenic |
TTCTCTTCCTCCAAAGGAAA+AGG | 0.464266 | 8.1:+85967132 | MS.gene39712:CDS |
AGAATTAACTTCTCATTTGG+AGG | 0.467244 | 8.1:-85971197 | None:intergenic |
CATGCGCAGGATTTGACACT+TGG | 0.467706 | 8.1:+85968378 | MS.gene39712:intron |
GTTATTTGGATCCAAACTCT+TGG | 0.471433 | 8.1:+85967829 | MS.gene39712:CDS |
GAAGTAAACTTGTAAAATTG+AGG | 0.474859 | 8.1:-85967267 | None:intergenic |
CCTGCAACTGCTAGATTGGT+TGG | 0.480634 | 8.1:+85972289 | MS.gene39712:CDS |
TTGTTGGTCATAGTCTTGGT+GGG | 0.483396 | 8.1:+85971219 | MS.gene39712:CDS |
GGACCAAACAGTCCTCCAAC+TGG | 0.486769 | 8.1:+85967803 | MS.gene39712:CDS |
TTGTGGTATCAGTCCAATAC+AGG | 0.487062 | 8.1:+85967051 | MS.gene39712:CDS |
GACTCATGCACTTTGCAAGT+TGG | 0.488800 | 8.1:-85969605 | None:intergenic |
GATACCCTTATCTGTTGCTA+TGG | 0.489986 | 8.1:+85967183 | MS.gene39712:CDS |
AAGGAAAAGGTGATTCTTGT+GGG | 0.492621 | 8.1:+85967145 | MS.gene39712:CDS |
CTCTGAACATACAAAGATTG+TGG | 0.498927 | 8.1:-85969560 | None:intergenic |
ATGGAGCTGGCCATGGTGCA+TGG | 0.509766 | 8.1:+85966960 | MS.gene39712:CDS |
TTATGGATAATTGAGAGAAC+TGG | 0.510143 | 8.1:+85968546 | MS.gene39712:CDS |
GCAACTATGCTTAAATCAGC+TGG | 0.513884 | 8.1:+85971059 | MS.gene39712:CDS |
GGTGTCTACATCTGTTGCTA+TGG | 0.514872 | 8.1:+85971241 | MS.gene39712:CDS |
GCAACTATGCTTAAATCAGC+TGG | 0.517535 | 8.1:+85966998 | MS.gene39712:CDS |
TATGGATTCTCTTCCTCCAA+AGG | 0.520175 | 8.1:+85967126 | MS.gene39712:CDS |
AAAGTTGTTGCTAACTGTAG+TGG | 0.521382 | 8.1:+85969648 | MS.gene39712:CDS |
TAATGTTACAACTATTGACT+TGG | 0.521866 | 8.1:+85967024 | MS.gene39712:CDS |
AAAGTCTTCATTATTTCCAA+AGG | 0.521901 | 8.1:+85968495 | MS.gene39712:CDS |
AGAGTTACCAAGCAGAGGAA+TGG | 0.523198 | 8.1:+85968462 | MS.gene39712:CDS |
CCAAATAACAAGCCAGTTGG+AGG | 0.528964 | 8.1:-85967815 | None:intergenic |
CTGGCCATGGTGCATGGTGT+TGG | 0.530072 | 8.1:+85966966 | MS.gene39712:CDS |
TGGTGATAATTGATACATCT+TGG | 0.534510 | 8.1:-85972329 | None:intergenic |
TCGTCATTAAAGATAGGATG+TGG | 0.534576 | 8.1:-85968417 | None:intergenic |
CTTGTTCATGGAGCTGGCCA+TGG | 0.536035 | 8.1:+85966953 | MS.gene39712:CDS |
AAAGGAAAAGGTGATTCTTG+TGG | 0.537925 | 8.1:+85967144 | MS.gene39712:CDS |
TTACCAAGCAGAGGAATGGA+AGG | 0.538666 | 8.1:+85968466 | MS.gene39712:CDS |
ACACCTCTGACTCAGGATCT+GGG | 0.542097 | 8.1:-85969676 | None:intergenic |
CTGATTCATGGTGGAAGCCA+TGG | 0.542667 | 8.1:+85971014 | MS.gene39712:CDS |
ATACCCTGTTGTTCTTCAAG+AGG | 0.545354 | 8.1:+85971331 | MS.gene39712:CDS |
GTATCAATTATCGCCTAATG+AGG | 0.552044 | 8.1:+85967862 | MS.gene39712:CDS |
CCACAGTTAGTCTTCTCTGA+TGG | 0.553719 | 8.1:+85967782 | MS.gene39712:CDS |
GATTCCATAAATGACATCAA+TGG | 0.557899 | 8.1:-85971170 | None:intergenic |
GAAGCCATGGTGCATGGTGT+TGG | 0.558171 | 8.1:+85971027 | MS.gene39712:CDS |
GATCCAAATAACAAGCCAGT+TGG | 0.568650 | 8.1:-85967818 | None:intergenic |
TTTGACACTTGGATCGTCGT+TGG | 0.570218 | 8.1:+85968389 | MS.gene39712:CDS |
ACTATTGACTTGGCTGCTTG+TGG | 0.574234 | 8.1:+85967034 | MS.gene39712:CDS |
AACATATACTCCACCTCAGA+TGG | 0.576227 | 8.1:-85972349 | None:intergenic |
TGTTGGTCATAGTCTTGGTG+GGG | 0.581014 | 8.1:+85971220 | MS.gene39712:CDS |
GAAGAACAACAGGGTATGAG+AGG | 0.589704 | 8.1:-85971325 | None:intergenic |
AAACAAGAGTTACCAAGCAG+AGG | 0.595363 | 8.1:+85968457 | MS.gene39712:CDS |
TCAATTATCACCATCTGAGG+TGG | 0.598444 | 8.1:+85972339 | MS.gene39712:CDS |
GAATCCATAAATGATATCAA+AGG | 0.609540 | 8.1:-85967112 | None:intergenic |
TATCCCAGATCCTGAGTCAG+AGG | 0.627043 | 8.1:+85969673 | MS.gene39712:CDS |
CTGTGGTGGATCTTGTTGAG+TGG | 0.634018 | 8.1:-85967765 | None:intergenic |
AATATTGGATGTACAGAACG+TGG | 0.634272 | 8.1:+85969531 | MS.gene39712:CDS |
GGTGGAGTATATGTTAATGT+TGG | 0.636064 | 8.1:+85972357 | MS.gene39712:CDS |
ATGGTGGAAGCCATGGTGCA+TGG | 0.643508 | 8.1:+85971021 | MS.gene39712:CDS |
TCAGAGAAGACTAACTGTGG+TGG | 0.643713 | 8.1:-85967779 | None:intergenic |
TATACCAACACCATGCACCA+TGG | 0.666354 | 8.1:-85966970 | None:intergenic |
TATACCAACACCATGCACCA+TGG | 0.667607 | 8.1:-85971031 | None:intergenic |
GTATCAATTATCACCATCTG+AGG | 0.675132 | 8.1:+85972336 | MS.gene39712:CDS |
CCATCAGAGAAGACTAACTG+TGG | 0.690147 | 8.1:-85967782 | None:intergenic |
TACCAAGCAGAGGAATGGAA+GGG | 0.694878 | 8.1:+85968467 | MS.gene39712:CDS |
ATTATCAAAATGTTTAAACG+GGG | 0.703596 | 8.1:+85966857 | None:intergenic |
AGTCGACGTCAATTGGACAA+CGG | 0.753669 | 8.1:+85969624 | MS.gene39712:CDS |
GAGAACTGGTCCATATGATG+AGG | 0.761857 | 8.1:+85968560 | MS.gene39712:CDS |
TTACCTCTTGAAGAACAACA+GGG | 0.771294 | 8.1:-85971334 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TATAATAATAATAATATATA+AGG | + | chr8.1:85971747-85971766 | MS.gene39712:intron | 0.0% |
!! | TATTTATATTAATAAAAATT+AGG | + | chr8.1:85967355-85967374 | MS.gene39712:intron | 0.0% |
!!! | AAAATTTAAAATTAAAATAA+TGG | - | chr8.1:85970588-85970607 | None:intergenic | 0.0% |
!!! | ATATATAATTTTATTAATTT+GGG | - | chr8.1:85970689-85970708 | None:intergenic | 0.0% |
!!! | TATATATAATTTTATTAATT+TGG | - | chr8.1:85970690-85970709 | None:intergenic | 0.0% |
!! | AATAACTTCATTAAAAAAAT+AGG | + | chr8.1:85969704-85969723 | MS.gene39712:intron | 10.0% |
!! | AATATAAATATATATAACCA+TGG | - | chr8.1:85967345-85967364 | None:intergenic | 10.0% |
!! | CATATATGATATAATATATA+AGG | + | chr8.1:85971991-85972010 | MS.gene39712:intron | 10.0% |
!! | CATTCAAAATTAAAATTATT+AGG | + | chr8.1:85967518-85967537 | MS.gene39712:intron | 10.0% |
!! | CTTATATATTATATCATATA+TGG | - | chr8.1:85971993-85972012 | None:intergenic | 10.0% |
!!! | ATACAAAAAAAATCTAATTT+TGG | - | chr8.1:85970344-85970363 | None:intergenic | 10.0% |
!!! | ATTTTAATAAAAACTATTGA+AGG | + | chr8.1:85968819-85968838 | MS.gene39712:intron | 10.0% |
!!! | TATGAATAATTTAATTTTGT+GGG | - | chr8.1:85971401-85971420 | None:intergenic | 10.0% |
!!! | TGTTATTTTTAATTTAATTG+AGG | - | chr8.1:85971447-85971466 | None:intergenic | 10.0% |
!!! | TTATGAATAATTTAATTTTG+TGG | - | chr8.1:85971402-85971421 | None:intergenic | 10.0% |
!!! | TTTTAATAAAAACTATTGAA+GGG | + | chr8.1:85968820-85968839 | MS.gene39712:intron | 10.0% |
!! | AAAAGTAAAAATATTGAGAA+TGG | - | chr8.1:85972108-85972127 | None:intergenic | 15.0% |
!! | AAAATAGGATATTTATCATT+AGG | + | chr8.1:85969719-85969738 | MS.gene39712:intron | 15.0% |
!! | AAAGTAAAAATATTGAGAAT+GGG | - | chr8.1:85972107-85972126 | None:intergenic | 15.0% |
!! | AAATTATCCTTCATTAAATA+TGG | + | chr8.1:85969896-85969915 | MS.gene39712:intron | 15.0% |
!! | AAATTTATAAGATGATGAAA+AGG | + | chr8.1:85970916-85970935 | MS.gene39712:intron | 15.0% |
!! | AATAGAAATAAATGTCTTAA+AGG | - | chr8.1:85970417-85970436 | None:intergenic | 15.0% |
!! | AATTTATAAGATGATGAAAA+GGG | + | chr8.1:85970917-85970936 | MS.gene39712:intron | 15.0% |
!! | CAAACTAATAATAAACATTA+AGG | - | chr8.1:85968717-85968736 | None:intergenic | 15.0% |
!! | GAATGTTAATTTCTAATAAA+AGG | - | chr8.1:85967503-85967522 | None:intergenic | 15.0% |
!! | TAATATAATATGGTATGTTA+AGG | - | chr8.1:85968309-85968328 | None:intergenic | 15.0% |
!! | TACATATATATTACTTTGTT+GGG | + | chr8.1:85971498-85971517 | MS.gene39712:intron | 15.0% |
!! | TATAAGATCTCTATTATATT+CGG | - | chr8.1:85969824-85969843 | None:intergenic | 15.0% |
!! | TTAAAAATAAATGGAGAATA+TGG | + | chr8.1:85968764-85968783 | MS.gene39712:intron | 15.0% |
!! | TTAAACTTCAAATTATTAGA+AGG | + | chr8.1:85968214-85968233 | MS.gene39712:intron | 15.0% |
!!! | AAAATCCATTAAAGTATTTT+AGG | - | chr8.1:85967636-85967655 | None:intergenic | 15.0% |
!!! | AACATATTTAATCCTTTTTT+AGG | + | chr8.1:85971649-85971668 | MS.gene39712:intron | 15.0% |
!!! | AACTCTTTATTTTTTTTTTG+TGG | - | chr8.1:85971920-85971939 | None:intergenic | 15.0% |
!!! | AATATTAGATATGCTTTTAT+TGG | + | chr8.1:85968667-85968686 | MS.gene39712:intron | 15.0% |
!!! | AATTATTTTAACAAAAGTCA+AGG | - | chr8.1:85968091-85968110 | None:intergenic | 15.0% |
!!! | ACTCTTTATTTTTTTTTTTG+TGG | - | chr8.1:85972049-85972068 | None:intergenic | 15.0% |
!!! | ATTTTTTTTTTTTTTTGTGG+TGG | - | chr8.1:85971802-85971821 | None:intergenic | 15.0% |
!!! | CTATTAATCATTCATTTTTT+AGG | - | chr8.1:85970771-85970790 | None:intergenic | 15.0% |
!!! | TAAATATAGTTTATCGTTTT+GGG | + | chr8.1:85971522-85971541 | MS.gene39712:intron | 15.0% |
!!! | TAGACTTTTTTTTTTTTTGA+GGG | + | chr8.1:85968159-85968178 | MS.gene39712:intron | 15.0% |
!!! | TATATACCTTTTGAATTTTA+TGG | + | chr8.1:85971552-85971571 | MS.gene39712:intron | 15.0% |
!!! | TATTTTTTTTTTTTTTGTGG+TGG | - | chr8.1:85971860-85971879 | None:intergenic | 15.0% |
!!! | TCTCAATATTTTTACTTTTT+AGG | + | chr8.1:85972109-85972128 | MS.gene39712:intron | 15.0% |
!!! | TTAAATATAGTTTATCGTTT+TGG | + | chr8.1:85971521-85971540 | MS.gene39712:intron | 15.0% |
!!! | TTAATCAAAGTTTAAAATTG+TGG | - | chr8.1:85971943-85971962 | None:intergenic | 15.0% |
!!! | TTAGACTTTTTTTTTTTTTG+AGG | + | chr8.1:85968158-85968177 | MS.gene39712:intron | 15.0% |
!!! | TTTATTCTTTCATTTTTCAT+TGG | + | chr8.1:85966908-85966927 | MS.gene39712:CDS | 15.0% |
!!! | TTTGTTAAAATAATTTGTCT+AGG | + | chr8.1:85968096-85968115 | MS.gene39712:intron | 15.0% |
!! | AAACATCATTAATGATTCAT+TGG | + | chr8.1:85970021-85970040 | MS.gene39712:intron | 20.0% |
!! | AGTTAATGAAGATGTTAAAA+AGG | - | chr8.1:85967553-85967572 | None:intergenic | 20.0% |
!! | ATCAATTTACAGAGAAAATA+TGG | - | chr8.1:85970717-85970736 | None:intergenic | 20.0% |
!! | ATTATTGATAGAAATGAGTT+AGG | + | chr8.1:85970178-85970197 | MS.gene39712:intron | 20.0% |
!! | CAATTAGTTATACAAATGTT+AGG | - | chr8.1:85969306-85969325 | None:intergenic | 20.0% |
!! | CTACATATATATTACTTTGT+TGG | + | chr8.1:85971497-85971516 | MS.gene39712:intron | 20.0% |
!! | CTATGAAAATAAATTCTTCT+TGG | - | chr8.1:85970802-85970821 | None:intergenic | 20.0% |
!! | CTTAAAACGACTTATAATTT+AGG | + | chr8.1:85970081-85970100 | MS.gene39712:intron | 20.0% |
!! | GAAAACCTAAAATACTTTAA+TGG | + | chr8.1:85967628-85967647 | MS.gene39712:intron | 20.0% |
!! | TAATGTTACAACAATTGAAT+TGG | + | chr8.1:85971085-85971104 | MS.gene39712:CDS | 20.0% |
!! | TAGACTCAATATTTGAATAT+TGG | + | chr8.1:85969516-85969535 | MS.gene39712:intron | 20.0% |
!! | TAGGAATCAATAAATAAAAG+TGG | - | chr8.1:85969287-85969306 | None:intergenic | 20.0% |
!! | TCCATAAAAAAGAATAAACT+CGG | + | chr8.1:85967594-85967613 | MS.gene39712:intron | 20.0% |
!! | TCTTGATTGAAAATTTGAAA+AGG | + | chr8.1:85967898-85967917 | MS.gene39712:intron | 20.0% |
!! | TTATAAACAACTCCTAAAAA+AGG | - | chr8.1:85971664-85971683 | None:intergenic | 20.0% |
!!! | AATGGATTAAATTTTTGAGT+TGG | - | chr8.1:85969197-85969216 | None:intergenic | 20.0% |
!!! | ATATGCTTTTATTGGTTTTT+TGG | + | chr8.1:85968675-85968694 | MS.gene39712:intron | 20.0% |
!!! | CAAATAAGTGTATAGATTTT+TGG | - | chr8.1:85968267-85968286 | None:intergenic | 20.0% |
!!! | CATGAAATTCTTTTACATAA+TGG | - | chr8.1:85969215-85969234 | None:intergenic | 20.0% |
!!! | CCAATGACATATTTTAAAAA+TGG | + | chr8.1:85971579-85971598 | MS.gene39712:intron | 20.0% |
!!! | CCATTTTTAAAATATGTCAT+TGG | - | chr8.1:85971582-85971601 | None:intergenic | 20.0% |
!!! | CTGAGTTTTAATTTTAATTG+TGG | + | chr8.1:85967669-85967688 | MS.gene39712:intron | 20.0% |
!!! | CTTTATTTTTTTTTTTGTGG+TGG | - | chr8.1:85972046-85972065 | None:intergenic | 20.0% |
!!! | GAATTTTAAAAATTGAGTGA+GGG | + | chr8.1:85971621-85971640 | MS.gene39712:intron | 20.0% |
!!! | TCTTTATTTTTTTTTTGTGG+TGG | - | chr8.1:85971917-85971936 | None:intergenic | 20.0% |
!!! | TGAATTTTAAAAATTGAGTG+AGG | + | chr8.1:85971620-85971639 | MS.gene39712:intron | 20.0% |
! | AAAAAAAAATATAAGGTCCG+AGG | + | chr8.1:85971812-85971831 | MS.gene39712:intron | 25.0% |
! | AAACGACTTATAATTTAGGA+CGG | + | chr8.1:85970085-85970104 | MS.gene39712:intron | 25.0% |
! | AAAGTCTTCATTATTTCCAA+AGG | + | chr8.1:85968495-85968514 | MS.gene39712:CDS | 25.0% |
! | AACTTTGATTAAAGACAAAG+AGG | + | chr8.1:85971966-85971985 | MS.gene39712:intron | 25.0% |
! | AATGAGAAGTTAATTCTTGT+TGG | + | chr8.1:85971203-85971222 | MS.gene39712:CDS | 25.0% |
! | AATGATCATTCGGAAAAAAA+AGG | - | chr8.1:85969262-85969281 | None:intergenic | 25.0% |
! | ACAAGAATTAACTTCTCATT+TGG | - | chr8.1:85971203-85971222 | None:intergenic | 25.0% |
! | ATAATAATATATAAGGTCCG+AGG | + | chr8.1:85971754-85971773 | MS.gene39712:intron | 25.0% |
! | ATAGACAAAGGAAAAAGAAT+TGG | + | chr8.1:85969780-85969799 | MS.gene39712:intron | 25.0% |
! | CCTTCATTAAATATGGTATA+GGG | + | chr8.1:85969903-85969922 | MS.gene39712:intron | 25.0% |
! | CTTCATGTGCATATATATAA+AGG | + | chr8.1:85970825-85970844 | MS.gene39712:intron | 25.0% |
! | CTTTATATATATGCACATGA+AGG | - | chr8.1:85970827-85970846 | None:intergenic | 25.0% |
! | GAAGTAAACTTGTAAAATTG+AGG | - | chr8.1:85967270-85967289 | None:intergenic | 25.0% |
! | GAATCCATAAATGATATCAA+AGG | - | chr8.1:85967115-85967134 | None:intergenic | 25.0% |
! | GATTCATTGGCATTATAAAA+CGG | + | chr8.1:85970034-85970053 | MS.gene39712:intron | 25.0% |
! | GCACTATTAACACAAATTAT+AGG | - | chr8.1:85970984-85971003 | None:intergenic | 25.0% |
! | GTAAATAGTATTAGTAACCA+TGG | + | chr8.1:85967325-85967344 | MS.gene39712:intron | 25.0% |
! | TAGACAAAGGAAAAAGAATT+GGG | + | chr8.1:85969781-85969800 | MS.gene39712:intron | 25.0% |
! | TATCTTTAATGACGAAAAAC+TGG | + | chr8.1:85968425-85968444 | MS.gene39712:CDS | 25.0% |
! | TCCTTCATTAAATATGGTAT+AGG | + | chr8.1:85969902-85969921 | MS.gene39712:intron | 25.0% |
! | TGAACCTTTGATATCATTTA+TGG | + | chr8.1:85967108-85967127 | MS.gene39712:CDS | 25.0% |
! | TGTTCAGAGAAATCTTAATT+AGG | + | chr8.1:85969574-85969593 | MS.gene39712:CDS | 25.0% |
! | TTATTGAGCTGATATGATTT+AGG | + | chr8.1:85968878-85968897 | MS.gene39712:intron | 25.0% |
!! | AGTTTTTCGTCATTAAAGAT+AGG | - | chr8.1:85968426-85968445 | None:intergenic | 25.0% |
!! | GGTTGATTCAATAAATCTAA+AGG | - | chr8.1:85968070-85968089 | None:intergenic | 25.0% |
!! | TAATGTTACAACTATTGACT+TGG | + | chr8.1:85967024-85967043 | MS.gene39712:CDS | 25.0% |
!! | TTGGAAATAATGAAGACTTT+TGG | - | chr8.1:85968495-85968514 | None:intergenic | 25.0% |
!! | TTTTACAAGTTTACTTCAAG+AGG | + | chr8.1:85967273-85967292 | MS.gene39712:CDS | 25.0% |
!!! | AGTATTTTAGGTTTTCTTCA+TGG | - | chr8.1:85967624-85967643 | None:intergenic | 25.0% |
!!! | CATTTTTCATTGGTGTTAAT+GGG | + | chr8.1:85966918-85966937 | MS.gene39712:CDS | 25.0% |
!!! | GCAATTTTTTTTACCTCATT+AGG | - | chr8.1:85967878-85967897 | None:intergenic | 25.0% |
!!! | GTATAGGGAAGTTTTTTTTA+GGG | + | chr8.1:85969918-85969937 | MS.gene39712:intron | 25.0% |
!!! | GTATTTTAGGTTTTCTTCAT+GGG | - | chr8.1:85967623-85967642 | None:intergenic | 25.0% |
!!! | TAGAAGGATTAGTTCTTTAA+TGG | + | chr8.1:85972231-85972250 | MS.gene39712:CDS | 25.0% |
!!! | TCATTTTTCATTGGTGTTAA+TGG | + | chr8.1:85966917-85966936 | MS.gene39712:CDS | 25.0% |
!!! | TCCGAGTTTATTCTTTTTTA+TGG | - | chr8.1:85967598-85967617 | None:intergenic | 25.0% |
!!! | TTTTTTAGGGATATGGTATA+GGG | + | chr8.1:85969931-85969950 | MS.gene39712:intron | 25.0% |
!!! | TTTTTTTAGGGATATGGTAT+AGG | + | chr8.1:85969930-85969949 | MS.gene39712:intron | 25.0% |
AAAAGTGGTCAATGATCATT+CGG | - | chr8.1:85969272-85969291 | None:intergenic | 30.0% | |
ACATTGAAGCCAATTATTGA+TGG | + | chr8.1:85968352-85968371 | MS.gene39712:intron | 30.0% | |
AGAATTAACTTCTCATTTGG+AGG | - | chr8.1:85971200-85971219 | None:intergenic | 30.0% | |
AGTTATCTATGCAAACTGTT+AGG | - | chr8.1:85969135-85969154 | None:intergenic | 30.0% | |
ATGGTATGTTAAGGTAACTT+AGG | - | chr8.1:85968300-85968319 | None:intergenic | 30.0% | |
CCCTATACCATATTTAATGA+AGG | - | chr8.1:85969906-85969925 | None:intergenic | 30.0% | |
GATATAATATATAAGGTCCG+AGG | + | chr8.1:85971998-85972017 | MS.gene39712:intron | 30.0% | |
GATTCCATAAATGACATCAA+TGG | - | chr8.1:85971173-85971192 | None:intergenic | 30.0% | |
GGTAGTCCATAAAATTCAAA+AGG | - | chr8.1:85971561-85971580 | None:intergenic | 30.0% | |
TAATCTTCTCTGATTCTATG+AGG | - | chr8.1:85967741-85967760 | None:intergenic | 30.0% | |
TATATATAAAGGATCCATCG+CGG | + | chr8.1:85970836-85970855 | MS.gene39712:intron | 30.0% | |
TCTAATGAAAATGTCTCCTT+TGG | - | chr8.1:85968514-85968533 | None:intergenic | 30.0% | |
TGAATCTCTTGTACTTGTAT+TGG | - | chr8.1:85971128-85971147 | None:intergenic | 30.0% | |
TGAGAATGATGTGTGTTATA+TGG | - | chr8.1:85970550-85970569 | None:intergenic | 30.0% | |
TGGTATGTTAAGGTAACTTA+GGG | - | chr8.1:85968299-85968318 | None:intergenic | 30.0% | |
TGGTGATAATTGATACATCT+TGG | - | chr8.1:85972332-85972351 | None:intergenic | 30.0% | |
TTATGGATAATTGAGAGAAC+TGG | + | chr8.1:85968546-85968565 | MS.gene39712:CDS | 30.0% | |
TTCCTTAACTTATGCTCTAA+AGG | - | chr8.1:85970320-85970339 | None:intergenic | 30.0% | |
! | ACAGAGTTTTTCTTCTTTGA+TGG | + | chr8.1:85972256-85972275 | MS.gene39712:CDS | 30.0% |
! | ACTGCAAGAGAAATTTTCTT+AGG | - | chr8.1:85967217-85967236 | None:intergenic | 30.0% |
! | AGTGATGAGCATATTTTGTT+TGG | - | chr8.1:85968938-85968957 | None:intergenic | 30.0% |
! | CTGCAAGAGAAATTTTCTTA+GGG | - | chr8.1:85967216-85967235 | None:intergenic | 30.0% |
! | TGAACCATTGATGTCATTTA+TGG | + | chr8.1:85971166-85971185 | MS.gene39712:CDS | 30.0% |
! | TGTCTATTGAGTCTATGTTT+TGG | + | chr8.1:85969018-85969037 | MS.gene39712:intron | 30.0% |
! | TTTTCCATAGCAACAGATAA+GGG | - | chr8.1:85967190-85967209 | None:intergenic | 30.0% |
!!! | GGAAGTTTTTTTTAGGGATA+TGG | + | chr8.1:85969924-85969943 | MS.gene39712:intron | 30.0% |
!!! | GGTATAGGGAAGTTTTTTTT+AGG | + | chr8.1:85969917-85969936 | MS.gene39712:intron | 30.0% |
AAACACTTTGTGCTTGTTCA+TGG | + | chr8.1:85966941-85966960 | MS.gene39712:CDS | 35.0% | |
AAAGGAAAAGGTGATTCTTG+TGG | + | chr8.1:85967144-85967163 | MS.gene39712:CDS | 35.0% | |
AAAGTTGTTGCTAACTGTAG+TGG | + | chr8.1:85969648-85969667 | MS.gene39712:CDS | 35.0% | |
AAGGAAAAGGTGATTCTTGT+GGG | + | chr8.1:85967145-85967164 | MS.gene39712:CDS | 35.0% | |
AATATTGGATGTACAGAACG+TGG | + | chr8.1:85969531-85969550 | MS.gene39712:CDS | 35.0% | |
AGGCGATAATTGATACAGAT+TGG | - | chr8.1:85967858-85967877 | None:intergenic | 35.0% | |
ATCACTTTCACCTCATCATA+TGG | - | chr8.1:85968573-85968592 | None:intergenic | 35.0% | |
ATCTATGCAAACTGTTAGGT+TGG | - | chr8.1:85969131-85969150 | None:intergenic | 35.0% | |
ATTACCTCTTGAAGAACAAC+AGG | - | chr8.1:85971338-85971357 | None:intergenic | 35.0% | |
ATTCTTGTTGGTCATAGTCT+TGG | + | chr8.1:85971215-85971234 | MS.gene39712:CDS | 35.0% | |
ATTGGTTGGACCAAAATTCA+TGG | + | chr8.1:85972303-85972322 | MS.gene39712:CDS | 35.0% | |
CGCATGTTACCATCAATAAT+TGG | - | chr8.1:85968364-85968383 | None:intergenic | 35.0% | |
CTCTGAACATACAAAGATTG+TGG | - | chr8.1:85969563-85969582 | None:intergenic | 35.0% | |
GATAAAGGATTCAGATCACA+TGG | + | chr8.1:85968590-85968609 | MS.gene39712:intron | 35.0% | |
GGTGGAGTATATGTTAATGT+TGG | + | chr8.1:85972357-85972376 | MS.gene39712:CDS | 35.0% | |
GTATCAATTATCACCATCTG+AGG | + | chr8.1:85972336-85972355 | MS.gene39712:CDS | 35.0% | |
GTATCAATTATCGCCTAATG+AGG | + | chr8.1:85967862-85967881 | MS.gene39712:CDS | 35.0% | |
GTTACAACAATTGAATTGGC+TGG | + | chr8.1:85971089-85971108 | MS.gene39712:CDS | 35.0% | |
GTTATTTGGATCCAAACTCT+TGG | + | chr8.1:85967829-85967848 | MS.gene39712:CDS | 35.0% | |
TAGAGATCGTTGCTATAACT+AGG | - | chr8.1:85969761-85969780 | None:intergenic | 35.0% | |
TATTCTTATTAGAACCGCGA+TGG | - | chr8.1:85970853-85970872 | None:intergenic | 35.0% | |
TCGTCATTAAAGATAGGATG+TGG | - | chr8.1:85968420-85968439 | None:intergenic | 35.0% | |
TCTCAAACGAAGATGATTCT+AGG | + | chr8.1:85970244-85970263 | MS.gene39712:intron | 35.0% | |
TGAATCTCTTGAACCTGTAT+TGG | - | chr8.1:85967067-85967086 | None:intergenic | 35.0% | |
TGATGAGGTGAAAGTGATAA+AGG | + | chr8.1:85968575-85968594 | MS.gene39712:intron | 35.0% | |
TTACCTCTTGAAGAACAACA+GGG | - | chr8.1:85971337-85971356 | None:intergenic | 35.0% | |
TTAGAGAGGATCTGCAATTA+TGG | + | chr8.1:85968529-85968548 | MS.gene39712:CDS | 35.0% | |
TTATATGGAGCTCTCAAAAG+TGG | - | chr8.1:85970535-85970554 | None:intergenic | 35.0% | |
! | ACAAGAATCACCTTTTCCTT+TGG | - | chr8.1:85967145-85967164 | None:intergenic | 35.0% |
! | AGGAGACATTTTCATTAGAG+AGG | + | chr8.1:85968515-85968534 | MS.gene39712:CDS | 35.0% |
! | ATCTTGGATGCCATGAATTT+TGG | - | chr8.1:85972316-85972335 | None:intergenic | 35.0% |
! | ATTCTTGTGGGTCATAGTTT+TGG | + | chr8.1:85967157-85967176 | MS.gene39712:CDS | 35.0% |
! | CTTTTCCATAGCAACAGATA+AGG | - | chr8.1:85967191-85967210 | None:intergenic | 35.0% |
! | GACTTATAATTTAGGACGGA+TGG | + | chr8.1:85970089-85970108 | MS.gene39712:intron | 35.0% |
!! | AGTTTACTTCAAGAGGTACT+TGG | + | chr8.1:85967280-85967299 | MS.gene39712:intron | 35.0% |
!! | GTCCTTTAGAGCATAAGTTA+AGG | + | chr8.1:85970315-85970334 | MS.gene39712:intron | 35.0% |
!!! | AATTTTGTGCTGATTCATGG+TGG | + | chr8.1:85971005-85971024 | MS.gene39712:CDS | 35.0% |
!!! | ACTGCAACTGAGATTTTTTG+TGG | - | chr8.1:85971275-85971294 | None:intergenic | 35.0% |
!!! | AGAGGTGAGTTTTTTAGGTT+TGG | - | chr8.1:85968625-85968644 | None:intergenic | 35.0% |
!!! | ATGTGAGAGGTGAGTTTTTT+AGG | - | chr8.1:85968630-85968649 | None:intergenic | 35.0% |
!!! | GCAAATTTTGTGCTGATTCA+TGG | + | chr8.1:85971002-85971021 | MS.gene39712:CDS | 35.0% |
!!! | TCTTTCTTTTGAGATTCGAG+TGG | + | chr8.1:85969461-85969480 | MS.gene39712:intron | 35.0% |
!!! | TTTTTTTACACCTCTGACTC+AGG | - | chr8.1:85969686-85969705 | None:intergenic | 35.0% |
!!! | TTTTTTTTTGTGGTGGCTTG+TGG | - | chr8.1:85971795-85971814 | None:intergenic | 35.0% |
AAACAAGAGTTACCAAGCAG+AGG | + | chr8.1:85968457-85968476 | MS.gene39712:CDS | 40.0% | |
AACATATACTCCACCTCAGA+TGG | - | chr8.1:85972352-85972371 | None:intergenic | 40.0% | |
AAGTCAAATGCTAACATGCG+TGG | - | chr8.1:85970460-85970479 | None:intergenic | 40.0% | |
AGTCAAATGCTAACATGCGT+GGG | - | chr8.1:85970459-85970478 | None:intergenic | 40.0% | |
ATACCCTGTTGTTCTTCAAG+AGG | + | chr8.1:85971331-85971350 | MS.gene39712:CDS | 40.0% | |
GATACCCTTATCTGTTGCTA+TGG | + | chr8.1:85967183-85967202 | MS.gene39712:CDS | 40.0% | |
GATCCAAATAACAAGCCAGT+TGG | - | chr8.1:85967821-85967840 | None:intergenic | 40.0% | |
GCAACGATCTCTATAGACAA+AGG | + | chr8.1:85969768-85969787 | MS.gene39712:intron | 40.0% | |
GCAACTATGCTTAAATCAGC+TGG | + | chr8.1:85966998-85967017 | MS.gene39712:CDS | 40.0% | |
TATGGATTCTCTTCCTCCAA+AGG | + | chr8.1:85967126-85967145 | MS.gene39712:CDS | 40.0% | |
TCAATTATCACCATCTGAGG+TGG | + | chr8.1:85972339-85972358 | MS.gene39712:CDS | 40.0% | |
TTCTCTTCCTCCAAAGGAAA+AGG | + | chr8.1:85967132-85967151 | MS.gene39712:CDS | 40.0% | |
TTGTGGTATCAGTCCAATAC+AGG | + | chr8.1:85967051-85967070 | MS.gene39712:CDS | 40.0% | |
! | ACAATTGAATTGGCTGGTTC+AGG | + | chr8.1:85971095-85971114 | MS.gene39712:CDS | 40.0% |
! | AGAATCACCTTTTCCTTTGG+AGG | - | chr8.1:85967142-85967161 | None:intergenic | 40.0% |
! | TTATTGATGGTAACATGCGC+AGG | + | chr8.1:85968365-85968384 | MS.gene39712:intron | 40.0% |
! | TTGTTGGTCATAGTCTTGGT+GGG | + | chr8.1:85971219-85971238 | MS.gene39712:CDS | 40.0% |
!! | AGCAGTCTTTAGAATGTGAG+AGG | - | chr8.1:85968643-85968662 | None:intergenic | 40.0% |
!!! | TTGTGGGTCATAGTTTTGGA+GGG | + | chr8.1:85967161-85967180 | MS.gene39712:CDS | 40.0% |
AGAGTTACCAAGCAGAGGAA+TGG | + | chr8.1:85968462-85968481 | MS.gene39712:CDS | 45.0% | |
AGTCGACGTCAATTGGACAA+CGG | + | chr8.1:85969624-85969643 | MS.gene39712:CDS | 45.0% | |
CAAACCTGCAACTGCTAGAT+TGG | + | chr8.1:85972285-85972304 | MS.gene39712:CDS | 45.0% | |
CAGATTGGATGCCAAGAGTT+TGG | - | chr8.1:85967843-85967862 | None:intergenic | 45.0% | |
CCAAATAACAAGCCAGTTGG+AGG | - | chr8.1:85967818-85967837 | None:intergenic | 45.0% | |
CCATCAGAGAAGACTAACTG+TGG | - | chr8.1:85967785-85967804 | None:intergenic | 45.0% | |
CCATCTTGTAGCAAGCTAGA+AGG | + | chr8.1:85972215-85972234 | MS.gene39712:intron | 45.0% | |
GAAGAACAACAGGGTATGAG+AGG | - | chr8.1:85971328-85971347 | None:intergenic | 45.0% | |
GACTCATGCACTTTGCAAGT+TGG | - | chr8.1:85969608-85969627 | None:intergenic | 45.0% | |
GAGAACTGGTCCATATGATG+AGG | + | chr8.1:85968560-85968579 | MS.gene39712:CDS | 45.0% | |
GGTGTCTACATCTGTTGCTA+TGG | + | chr8.1:85971241-85971260 | MS.gene39712:CDS | 45.0% | |
TACCAAGCAGAGGAATGGAA+GGG | + | chr8.1:85968467-85968486 | MS.gene39712:CDS | 45.0% | |
TATACCAACACCATGCACCA+TGG | - | chr8.1:85966973-85966992 | None:intergenic | 45.0% | |
TCAGAGAAGACTAACTGTGG+TGG | - | chr8.1:85967782-85967801 | None:intergenic | 45.0% | |
TCTAGCAGTTGCAGGTTTGT+TGG | - | chr8.1:85972284-85972303 | None:intergenic | 45.0% | |
TTACCAAGCAGAGGAATGGA+AGG | + | chr8.1:85968466-85968485 | MS.gene39712:CDS | 45.0% | |
TTTGACACTTGGATCGTCGT+TGG | + | chr8.1:85968389-85968408 | MS.gene39712:CDS | 45.0% | |
TTTGTGCTTGTTCATGGAGC+TGG | + | chr8.1:85966947-85966966 | MS.gene39712:CDS | 45.0% | |
! | CTAGCAGTTGCAGGTTTGTT+GGG | - | chr8.1:85972283-85972302 | None:intergenic | 45.0% |
! | CTTGTTGGTCATAGTCTTGG+TGG | + | chr8.1:85971218-85971237 | MS.gene39712:CDS | 45.0% |
! | TGTTGGTCATAGTCTTGGTG+GGG | + | chr8.1:85971220-85971239 | MS.gene39712:CDS | 45.0% |
!! | ACTATTGACTTGGCTGCTTG+TGG | + | chr8.1:85967034-85967053 | MS.gene39712:CDS | 45.0% |
!! | CCACAGTTAGTCTTCTCTGA+TGG | + | chr8.1:85967782-85967801 | MS.gene39712:CDS | 45.0% |
!! | CCTCCAACTGGCTTGTTATT+TGG | + | chr8.1:85967815-85967834 | MS.gene39712:CDS | 45.0% |
!! | CCTTCTAGCTTGCTACAAGA+TGG | - | chr8.1:85972218-85972237 | None:intergenic | 45.0% |
!! | TGGTGCATGGTGTTGGTATA+AGG | + | chr8.1:85966973-85966992 | MS.gene39712:CDS | 45.0% |
!!! | CTTGTGGGTCATAGTTTTGG+AGG | + | chr8.1:85967160-85967179 | MS.gene39712:CDS | 45.0% |
!!! | TTTTTTGTGGTGGCTTGTGG+TGG | - | chr8.1:85971792-85971811 | None:intergenic | 45.0% |
!! | ACAAAAAAAAAAAAAATATA+AGG | + | chr8.1:85971862-85971881 | MS.gene39712:intron | 5.0% |
!! | ATGTATAATATAATATAATA+TGG | - | chr8.1:85968319-85968338 | None:intergenic | 5.0% |
!! | ATTCAAAATTAAAATTATTA+GGG | + | chr8.1:85967519-85967538 | MS.gene39712:intron | 5.0% |
!! | CAAAAAAAAAAAAAAATATA+AGG | + | chr8.1:85971805-85971824 | MS.gene39712:intron | 5.0% |
!! | TTATATATTATATCATATAT+GGG | - | chr8.1:85971992-85972011 | None:intergenic | 5.0% |
!!! | ATTTGTTATTTTTTATTTTA+GGG | + | chr8.1:85970280-85970299 | MS.gene39712:intron | 5.0% |
!!! | GTATTATTTTTAAAAATAAA+TGG | + | chr8.1:85968755-85968774 | MS.gene39712:intron | 5.0% |
!!! | TATATTTTTTTTTTTTTTTG+TGG | - | chr8.1:85971805-85971824 | None:intergenic | 5.0% |
!!! | TATTTGTTATTTTTTATTTT+AGG | + | chr8.1:85970279-85970298 | MS.gene39712:intron | 5.0% |
!!! | TTATATTTTTTTTTTTTTTG+TGG | - | chr8.1:85971863-85971882 | None:intergenic | 5.0% |
AAGCCAGTTGGAGGACTGTT+TGG | - | chr8.1:85967809-85967828 | None:intergenic | 50.0% | |
AAGGTCCGAGGTTCAAACCT+CGG | + | chr8.1:85971766-85971785 | MS.gene39712:intron | 50.0% | |
ACACCTCTGACTCAGGATCT+GGG | - | chr8.1:85969679-85969698 | None:intergenic | 50.0% | |
CATGCGCAGGATTTGACACT+TGG | + | chr8.1:85968378-85968397 | MS.gene39712:intron | 50.0% | |
CCAACCAATCTAGCAGTTGC+AGG | - | chr8.1:85972292-85972311 | None:intergenic | 50.0% | |
CCTGCAACTGCTAGATTGGT+TGG | + | chr8.1:85972289-85972308 | MS.gene39712:CDS | 50.0% | |
GTGCATGAGTCGACGTCAAT+TGG | + | chr8.1:85969617-85969636 | MS.gene39712:CDS | 50.0% | |
TACACCTCTGACTCAGGATC+TGG | - | chr8.1:85969680-85969699 | None:intergenic | 50.0% | |
TACCCTTCCATTCCTCTGCT+TGG | - | chr8.1:85968472-85968491 | None:intergenic | 50.0% | |
TATCCCAGATCCTGAGTCAG+AGG | + | chr8.1:85969673-85969692 | MS.gene39712:CDS | 50.0% | |
TCTTAACCCCCTCCTTGCTA+GGG | - | chr8.1:85968244-85968263 | None:intergenic | 50.0% | |
TTAGAAGGCCTTCCCTAGCA+AGG | + | chr8.1:85968229-85968248 | MS.gene39712:intron | 50.0% | |
! | CTGATTCATGGTGGAAGCCA+TGG | + | chr8.1:85971014-85971033 | MS.gene39712:CDS | 50.0% |
!! | CTGTGGTGGATCTTGTTGAG+TGG | - | chr8.1:85967768-85967787 | None:intergenic | 50.0% |
AAGGCCTTCCCTAGCAAGGA+GGG | + | chr8.1:85968233-85968252 | MS.gene39712:intron | 55.0% | |
CCAACTGAGCTAAGCTCACG+AGG | - | chr8.1:85971711-85971730 | None:intergenic | 55.0% | |
CCTCGTGAGCTTAGCTCAGT+TGG | + | chr8.1:85971708-85971727 | MS.gene39712:intron | 55.0% | |
CTTGTTCATGGAGCTGGCCA+TGG | + | chr8.1:85966953-85966972 | MS.gene39712:CDS | 55.0% | |
GAAGCCATGGTGCATGGTGT+TGG | + | chr8.1:85971027-85971046 | MS.gene39712:CDS | 55.0% | |
GGACCAAACAGTCCTCCAAC+TGG | + | chr8.1:85967803-85967822 | MS.gene39712:CDS | 55.0% | |
GTCTTAACCCCCTCCTTGCT+AGG | - | chr8.1:85968245-85968264 | None:intergenic | 55.0% | |
! | ATGGTGGAAGCCATGGTGCA+TGG | + | chr8.1:85971021-85971040 | MS.gene39712:CDS | 55.0% |
AACCCCCTCCTTGCTAGGGA+AGG | - | chr8.1:85968240-85968259 | None:intergenic | 60.0% | |
AGGCCTTCCCTAGCAAGGAG+GGG | + | chr8.1:85968234-85968253 | MS.gene39712:intron | 60.0% | |
ATGGAGCTGGCCATGGTGCA+TGG | + | chr8.1:85966960-85966979 | MS.gene39712:CDS | 60.0% | |
CTGGCCATGGTGCATGGTGT+TGG | + | chr8.1:85966966-85966985 | MS.gene39712:CDS | 60.0% | |
GAAGGCCTTCCCTAGCAAGG+AGG | + | chr8.1:85968232-85968251 | MS.gene39712:intron | 60.0% | |
GGTGGCCGAGGTTTGAACCT+CGG | - | chr8.1:85971774-85971793 | None:intergenic | 60.0% | |
GGCCTTCCCTAGCAAGGAGG+GGG | + | chr8.1:85968235-85968254 | MS.gene39712:intron | 65.0% | |
! | GTGGTGGCTTGTGGTGGCCG+AGG | - | chr8.1:85971786-85971805 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.1 | gene | 85966866 | 85972384 | 85966866 | ID=MS.gene39712 |
chr8.1 | mRNA | 85966866 | 85972384 | 85966866 | ID=MS.gene39712.t1;Parent=MS.gene39712 |
chr8.1 | exon | 85966866 | 85967294 | 85966866 | ID=MS.gene39712.t1.exon1;Parent=MS.gene39712.t1 |
chr8.1 | CDS | 85966866 | 85967294 | 85966866 | ID=cds.MS.gene39712.t1;Parent=MS.gene39712.t1 |
chr8.1 | exon | 85967746 | 85967883 | 85967746 | ID=MS.gene39712.t1.exon2;Parent=MS.gene39712.t1 |
chr8.1 | CDS | 85967746 | 85967883 | 85967746 | ID=cds.MS.gene39712.t1;Parent=MS.gene39712.t1 |
chr8.1 | exon | 85968387 | 85968581 | 85968387 | ID=MS.gene39712.t1.exon3;Parent=MS.gene39712.t1 |
chr8.1 | CDS | 85968387 | 85968581 | 85968387 | ID=cds.MS.gene39712.t1;Parent=MS.gene39712.t1 |
chr8.1 | exon | 85969519 | 85969694 | 85969519 | ID=MS.gene39712.t1.exon4;Parent=MS.gene39712.t1 |
chr8.1 | CDS | 85969519 | 85969694 | 85969519 | ID=cds.MS.gene39712.t1;Parent=MS.gene39712.t1 |
chr8.1 | exon | 85971001 | 85971352 | 85971001 | ID=MS.gene39712.t1.exon5;Parent=MS.gene39712.t1 |
chr8.1 | CDS | 85971001 | 85971352 | 85971001 | ID=cds.MS.gene39712.t1;Parent=MS.gene39712.t1 |
chr8.1 | exon | 85972226 | 85972384 | 85972226 | ID=MS.gene39712.t1.exon6;Parent=MS.gene39712.t1 |
chr8.1 | CDS | 85972226 | 85972384 | 85972226 | ID=cds.MS.gene39712.t1;Parent=MS.gene39712.t1 |
Gene Sequence |
Protein sequence |