Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene39793.t1 | XP_024640889.1 | 98.4 | 258 | 4 | 0 | 1 | 258 | 6 | 263 | 1.60E-114 | 423.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene39793.t1 | Q9LES3 | 35.7 | 294 | 150 | 9 | 1 | 258 | 1 | 291 | 6.7e-24 | 114.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene39793.t1 | G7K7P6 | 98.4 | 258 | 4 | 0 | 1 | 258 | 1 | 258 | 1.2e-114 | 423.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene39793.t1 | TF | bZIP |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049142 | MS.gene39793 | 0.808362 | 3.21E-50 | -1.69E-46 |
MS.gene049404 | MS.gene39793 | 0.809602 | 1.75E-50 | -1.69E-46 |
MS.gene050559 | MS.gene39793 | 0.81973 | 9.96E-53 | -1.69E-46 |
MS.gene050561 | MS.gene39793 | 0.818278 | 2.13E-52 | -1.69E-46 |
MS.gene050562 | MS.gene39793 | 0.811313 | 7.45E-51 | -1.69E-46 |
MS.gene051198 | MS.gene39793 | 0.81076 | 9.82E-51 | -1.69E-46 |
MS.gene051279 | MS.gene39793 | 0.828361 | 9.38E-55 | -1.69E-46 |
MS.gene051744 | MS.gene39793 | 0.83879 | 2.33E-57 | -1.69E-46 |
MS.gene052168 | MS.gene39793 | 0.800001 | 1.77E-48 | -1.69E-46 |
MS.gene053079 | MS.gene39793 | 0.816915 | 4.32E-52 | -1.69E-46 |
MS.gene053226 | MS.gene39793 | 0.829964 | 3.83E-55 | -1.69E-46 |
MS.gene053541 | MS.gene39793 | 0.823537 | 1.31E-53 | -1.69E-46 |
MS.gene053542 | MS.gene39793 | 0.835635 | 1.50E-56 | -1.69E-46 |
MS.gene054651 | MS.gene39793 | 0.835561 | 1.56E-56 | -1.69E-46 |
MS.gene054775 | MS.gene39793 | 0.806586 | 7.66E-50 | -1.69E-46 |
MS.gene055694 | MS.gene39793 | 0.831524 | 1.59E-55 | -1.69E-46 |
MS.gene056050 | MS.gene39793 | 0.815474 | 9.07E-52 | -1.69E-46 |
MS.gene056174 | MS.gene39793 | 0.824589 | 7.44E-54 | -1.69E-46 |
MS.gene056507 | MS.gene39793 | 0.804721 | 1.89E-49 | -1.69E-46 |
MS.gene05686 | MS.gene39793 | 0.862018 | 6.82E-64 | -1.69E-46 |
MS.gene057208 | MS.gene39793 | 0.803093 | 4.11E-49 | -1.69E-46 |
MS.gene057693 | MS.gene39793 | 0.802469 | 5.53E-49 | -1.69E-46 |
MS.gene058010 | MS.gene39793 | 0.803175 | 3.95E-49 | -1.69E-46 |
MS.gene058427 | MS.gene39793 | 0.80342 | 3.52E-49 | -1.69E-46 |
MS.gene05847 | MS.gene39793 | 0.810259 | 1.26E-50 | -1.69E-46 |
MS.gene058781 | MS.gene39793 | 0.813905 | 2.02E-51 | -1.69E-46 |
MS.gene058783 | MS.gene39793 | 0.811594 | 6.48E-51 | -1.69E-46 |
MS.gene05897 | MS.gene39793 | 0.803671 | 3.12E-49 | -1.69E-46 |
MS.gene059625 | MS.gene39793 | 0.808327 | 3.27E-50 | -1.69E-46 |
MS.gene05978 | MS.gene39793 | 0.823846 | 1.11E-53 | -1.69E-46 |
MS.gene060355 | MS.gene39793 | 0.803537 | 3.32E-49 | -1.69E-46 |
MS.gene060935 | MS.gene39793 | 0.81985 | 9.35E-53 | -1.69E-46 |
MS.gene060937 | MS.gene39793 | 0.805957 | 1.04E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene39793.t1 | MTR_5g088230 | 98.450 | 258 | 4 | 0 | 1 | 258 | 6 | 263 | 0.0 | 520 |
MS.gene39793.t1 | MTR_5g088230 | 98.450 | 258 | 4 | 0 | 1 | 258 | 1 | 258 | 0.0 | 518 |
MS.gene39793.t1 | MTR_3g010660 | 41.693 | 319 | 122 | 8 | 1 | 258 | 1 | 316 | 1.07e-59 | 204 |
MS.gene39793.t1 | MTR_8g043960 | 45.548 | 292 | 109 | 7 | 13 | 258 | 20 | 307 | 5.29e-59 | 201 |
MS.gene39793.t1 | MTR_6g026800 | 38.170 | 317 | 135 | 7 | 1 | 258 | 1 | 315 | 3.63e-38 | 144 |
MS.gene39793.t1 | MTR_7g088090 | 43.750 | 144 | 62 | 5 | 1 | 135 | 1 | 134 | 1.44e-22 | 99.8 |
MS.gene39793.t1 | MTR_7g088090 | 46.457 | 127 | 61 | 3 | 133 | 258 | 194 | 314 | 4.46e-19 | 89.4 |
MS.gene39793.t1 | MTR_3g101780 | 46.721 | 122 | 55 | 3 | 17 | 135 | 27 | 141 | 2.92e-21 | 97.4 |
MS.gene39793.t1 | MTR_3g101780 | 45.098 | 102 | 51 | 2 | 167 | 263 | 324 | 425 | 4.70e-12 | 68.9 |
MS.gene39793.t1 | MTR_2g086390 | 31.765 | 255 | 140 | 9 | 12 | 236 | 3 | 253 | 9.62e-20 | 90.5 |
MS.gene39793.t1 | MTR_2g086390 | 31.890 | 254 | 141 | 9 | 12 | 236 | 3 | 253 | 3.44e-19 | 89.0 |
MS.gene39793.t1 | MTR_4g085910 | 41.732 | 127 | 59 | 4 | 17 | 135 | 18 | 137 | 5.55e-19 | 89.7 |
MS.gene39793.t1 | MTR_2g086340 | 29.924 | 264 | 136 | 8 | 19 | 236 | 24 | 284 | 7.98e-14 | 73.6 |
MS.gene39793.t1 | MTR_7g104480 | 36.154 | 130 | 65 | 2 | 24 | 135 | 46 | 175 | 1.86e-13 | 73.6 |
MS.gene39793.t1 | MTR_1g098590 | 33.508 | 191 | 102 | 6 | 69 | 238 | 21 | 207 | 3.01e-11 | 64.3 |
MS.gene39793.t1 | MTR_4g094390 | 38.525 | 122 | 55 | 3 | 120 | 238 | 71 | 175 | 4.84e-11 | 63.2 |
MS.gene39793.t1 | MTR_1g098590 | 35.556 | 180 | 89 | 6 | 82 | 238 | 32 | 207 | 4.85e-11 | 63.5 |
MS.gene39793.t1 | MTR_1g098590 | 34.637 | 179 | 92 | 6 | 82 | 238 | 32 | 207 | 6.78e-11 | 63.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene39793.t1 | AT3G56850 | 42.446 | 278 | 122 | 9 | 17 | 258 | 16 | 291 | 3.89e-47 | 169 |
MS.gene39793.t1 | AT2G41070 | 42.023 | 257 | 118 | 6 | 17 | 258 | 16 | 256 | 9.32e-45 | 161 |
MS.gene39793.t1 | AT2G41070 | 42.023 | 257 | 118 | 6 | 17 | 258 | 16 | 256 | 9.32e-45 | 161 |
MS.gene39793.t1 | AT2G41070 | 42.023 | 257 | 118 | 6 | 17 | 258 | 16 | 256 | 9.32e-45 | 161 |
MS.gene39793.t1 | AT2G41070 | 42.023 | 257 | 118 | 6 | 17 | 258 | 25 | 265 | 1.43e-44 | 161 |
MS.gene39793.t1 | AT2G41070 | 41.350 | 237 | 108 | 6 | 17 | 238 | 16 | 236 | 5.19e-38 | 142 |
MS.gene39793.t1 | AT1G49720 | 42.188 | 128 | 65 | 1 | 17 | 135 | 23 | 150 | 1.26e-22 | 101 |
MS.gene39793.t1 | AT1G49720 | 42.188 | 128 | 65 | 1 | 17 | 135 | 23 | 150 | 1.55e-22 | 100 |
MS.gene39793.t1 | AT1G49720 | 42.188 | 128 | 65 | 1 | 17 | 135 | 23 | 150 | 1.55e-22 | 100 |
MS.gene39793.t1 | AT4G34000 | 39.873 | 158 | 56 | 4 | 17 | 135 | 27 | 184 | 1.66e-20 | 95.5 |
MS.gene39793.t1 | AT4G34000 | 39.873 | 158 | 56 | 4 | 17 | 135 | 27 | 184 | 3.39e-20 | 94.7 |
MS.gene39793.t1 | AT4G34000 | 37.209 | 129 | 54 | 3 | 141 | 263 | 341 | 448 | 4.72e-11 | 66.2 |
MS.gene39793.t1 | AT4G34000 | 39.873 | 158 | 56 | 4 | 17 | 135 | 27 | 184 | 3.39e-20 | 94.7 |
MS.gene39793.t1 | AT4G34000 | 37.209 | 129 | 54 | 3 | 141 | 263 | 341 | 448 | 4.72e-11 | 66.2 |
MS.gene39793.t1 | AT4G34000 | 39.873 | 158 | 56 | 4 | 17 | 135 | 27 | 184 | 3.39e-20 | 94.7 |
MS.gene39793.t1 | AT4G34000 | 37.209 | 129 | 54 | 3 | 141 | 263 | 341 | 448 | 4.72e-11 | 66.2 |
MS.gene39793.t1 | AT3G44460 | 33.716 | 261 | 124 | 7 | 19 | 236 | 37 | 291 | 3.64e-18 | 86.7 |
MS.gene39793.t1 | AT3G19290 | 37.681 | 138 | 66 | 3 | 17 | 135 | 34 | 170 | 4.96e-18 | 87.4 |
MS.gene39793.t1 | AT3G19290 | 37.681 | 138 | 66 | 3 | 17 | 135 | 34 | 170 | 5.71e-18 | 87.4 |
MS.gene39793.t1 | AT3G19290 | 37.681 | 138 | 66 | 3 | 17 | 135 | 34 | 170 | 1.01e-17 | 86.7 |
MS.gene39793.t1 | AT3G19290 | 41.667 | 108 | 57 | 3 | 160 | 263 | 320 | 425 | 6.17e-11 | 65.5 |
MS.gene39793.t1 | AT3G19290 | 37.681 | 138 | 66 | 3 | 17 | 135 | 34 | 170 | 1.01e-17 | 86.7 |
MS.gene39793.t1 | AT3G19290 | 41.667 | 108 | 57 | 3 | 160 | 263 | 320 | 425 | 6.17e-11 | 65.5 |
MS.gene39793.t1 | AT3G19290 | 37.681 | 138 | 66 | 3 | 17 | 135 | 34 | 170 | 1.02e-17 | 86.7 |
MS.gene39793.t1 | AT1G03970 | 40.244 | 164 | 73 | 5 | 89 | 239 | 83 | 234 | 1.00e-16 | 81.3 |
MS.gene39793.t1 | AT1G45249 | 39.416 | 137 | 58 | 5 | 17 | 135 | 21 | 150 | 2.19e-15 | 79.3 |
MS.gene39793.t1 | AT1G45249 | 39.416 | 137 | 58 | 5 | 17 | 135 | 21 | 150 | 2.19e-15 | 79.3 |
MS.gene39793.t1 | AT1G45249 | 39.416 | 137 | 58 | 5 | 17 | 135 | 21 | 150 | 2.19e-15 | 79.3 |
MS.gene39793.t1 | AT1G45249 | 39.416 | 137 | 58 | 5 | 17 | 135 | 21 | 150 | 2.19e-15 | 79.3 |
MS.gene39793.t1 | AT1G45249 | 39.416 | 137 | 58 | 5 | 17 | 135 | 21 | 150 | 2.42e-15 | 79.0 |
MS.gene39793.t1 | AT1G45249 | 39.416 | 137 | 58 | 5 | 17 | 135 | 21 | 150 | 2.42e-15 | 79.0 |
MS.gene39793.t1 | AT1G45249 | 39.416 | 137 | 58 | 5 | 17 | 135 | 21 | 150 | 3.15e-15 | 79.0 |
MS.gene39793.t1 | AT1G45249 | 39.416 | 137 | 58 | 5 | 17 | 135 | 36 | 165 | 3.48e-15 | 79.0 |
MS.gene39793.t1 | AT1G45249 | 39.416 | 137 | 58 | 5 | 17 | 135 | 36 | 165 | 3.48e-15 | 79.0 |
MS.gene39793.t1 | AT1G45249 | 39.416 | 137 | 58 | 5 | 17 | 135 | 21 | 150 | 4.32e-15 | 78.6 |
MS.gene39793.t1 | AT2G17770 | 29.651 | 172 | 95 | 5 | 93 | 239 | 1 | 171 | 1.22e-11 | 64.7 |
MS.gene39793.t1 | AT2G36270 | 45.263 | 95 | 42 | 2 | 179 | 263 | 342 | 436 | 2.37e-11 | 67.0 |
MS.gene39793.t1 | AT2G36270 | 45.263 | 95 | 42 | 2 | 179 | 263 | 342 | 436 | 2.37e-11 | 67.0 |
MS.gene39793.t1 | AT2G36270 | 61.404 | 57 | 22 | 0 | 179 | 235 | 342 | 398 | 6.61e-11 | 65.5 |
Find 160 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAAATCTGTGGATCCTTCTA+TGG | 0.202139 | 5.4:+69333356 | MS.gene39793:CDS |
ACATCAAGCTTTGGGGAATT+TGG | 0.203400 | 5.4:-69332880 | None:intergenic |
GCTTAATATGGCAGTTTCTT+TGG | 0.228630 | 5.4:+69329685 | MS.gene39793:CDS |
ATACTAACTTCAGTGTTTAT+AGG | 0.252607 | 5.4:-69329734 | None:intergenic |
AATAGTCTACTAGGAGATTT+GGG | 0.275351 | 5.4:+69322603 | MS.gene39793:CDS |
TAATAGTCTACTAGGAGATT+TGG | 0.281034 | 5.4:+69322602 | MS.gene39793:CDS |
CCTTGGTAACCAGTTCATTA+TGG | 0.284719 | 5.4:-69323280 | None:intergenic |
GAAGAATCAGCTGTTGGTTC+TGG | 0.289068 | 5.4:+69333776 | MS.gene39793:CDS |
ACTCTTCGAAGACGGTATTT+AGG | 0.289336 | 5.4:-69325840 | None:intergenic |
TTAGGTTCAGGTGATGATTC+AGG | 0.303409 | 5.4:-69325822 | None:intergenic |
CGAAGACGGTATTTAGGTTC+AGG | 0.343807 | 5.4:-69325834 | None:intergenic |
AGAAAACACTCTATCCATTT+GGG | 0.349870 | 5.4:-69333691 | None:intergenic |
GTGGCGGGACATCAAGCTTT+GGG | 0.351760 | 5.4:-69332888 | None:intergenic |
CAGAAAACACTCTATCCATT+TGG | 0.352324 | 5.4:-69333692 | None:intergenic |
TGGGCAACAGTCTCATTTAC+AGG | 0.354570 | 5.4:+69322527 | MS.gene39793:CDS |
AAAGATGCAAAAGCTTAATA+TGG | 0.360364 | 5.4:+69329673 | MS.gene39793:CDS |
AAAGTTACTACTTCTGTTAG+TGG | 0.362698 | 5.4:+69333249 | MS.gene39793:CDS |
TTTCTTGAGGCACTAGGTGC+TGG | 0.368041 | 5.4:+69333015 | MS.gene39793:CDS |
AAGGATAAAACAGATTTGTT+AGG | 0.383840 | 5.4:+69333441 | MS.gene39793:CDS |
TTTAGATATAAAATCAGTTA+AGG | 0.386433 | 5.4:+69333599 | MS.gene39793:CDS |
GCTGAAGGAAATAAGGTTGT+AGG | 0.386567 | 5.4:+69322678 | MS.gene39793:CDS |
TTCTTCAATTAGTAGTTTGT+CGG | 0.387734 | 5.4:+69323010 | MS.gene39793:CDS |
GGAGATTTGGGGAAGCCGTT+AGG | 0.390252 | 5.4:+69322615 | MS.gene39793:CDS |
GAAAGTTGAGGATAGGGAAA+TGG | 0.390564 | 5.4:+69322845 | MS.gene39793:CDS |
TGAGAAGGAAAATCAAGAAT+AGG | 0.395993 | 5.4:+69323096 | MS.gene39793:CDS |
CGACGAGGGTAAAGGATTGC+TGG | 0.397260 | 5.4:+69327782 | MS.gene39793:CDS |
CCTTGCACAGGAGTTTGAGC+AGG | 0.397902 | 5.4:+69325791 | MS.gene39793:intron |
ACTGCTGTAGATTCTTCTCT+TGG | 0.405726 | 5.4:+69333075 | MS.gene39793:CDS |
CTAGGTCAGAAGAAACAATA+TGG | 0.406097 | 5.4:+69322813 | MS.gene39793:CDS |
TACTATAAGCTTGGGAGAAA+AGG | 0.410945 | 5.4:-69333464 | None:intergenic |
CAATGGGTTCTCAAAGTAAT+GGG | 0.413643 | 5.4:+69322508 | None:intergenic |
AGTTAGTTAAGCAAAATTCA+TGG | 0.414879 | 5.4:+69322556 | MS.gene39793:CDS |
ATTGTTTCTTCTGACCTAGC+TGG | 0.422038 | 5.4:-69322809 | None:intergenic |
GAGAAGGAAAATCAAGAATA+GGG | 0.428756 | 5.4:+69323097 | MS.gene39793:CDS |
GCGTTCACGTGCAAGAAAAC+AGG | 0.432338 | 5.4:+69323130 | MS.gene39793:CDS |
GCCATCAGAAGCACTAGCTT+TGG | 0.433777 | 5.4:-69333292 | None:intergenic |
AAGAATGGAGCTTCTATTGC+CGG | 0.433861 | 5.4:-69327721 | None:intergenic |
GGAGAGCCACACTCTATAAC+AGG | 0.438164 | 5.4:+69329648 | MS.gene39793:intron |
AGTTTGTCGGATGCAAAATC+AGG | 0.438269 | 5.4:+69323023 | MS.gene39793:CDS |
GTGGACTGCTGAAGGAAATA+AGG | 0.439159 | 5.4:+69322671 | MS.gene39793:CDS |
ATGCAAAATCAGGTCGCAAA+AGG | 0.439902 | 5.4:+69323033 | MS.gene39793:CDS |
TAAGATTGATACTATAAGCT+TGG | 0.441084 | 5.4:-69333473 | None:intergenic |
GAGGAACCTGAGTCGGCAAT+TGG | 0.441553 | 5.4:+69333822 | MS.gene39793:CDS |
AAGATTGATACTATAAGCTT+GGG | 0.443694 | 5.4:-69333472 | None:intergenic |
TATCAATCTTAATCAATTTG+TGG | 0.448796 | 5.4:+69333485 | MS.gene39793:CDS |
TTAATAACACAACCCATAGA+AGG | 0.450641 | 5.4:-69333369 | None:intergenic |
AAAGTTGAGGATAGGGAAAT+GGG | 0.453635 | 5.4:+69322846 | MS.gene39793:CDS |
CGCTTGCATGGTGTCTGCTC+CGG | 0.454652 | 5.4:+69327702 | MS.gene39793:CDS |
TTGGGAAGGTTGTTGAGTGC+AGG | 0.457516 | 5.4:+69333715 | MS.gene39793:CDS |
TAATTTGATGCAGCCCCAAA+TGG | 0.460289 | 5.4:+69333677 | MS.gene39793:CDS |
AGTGGCGGGACATCAAGCTT+TGG | 0.460408 | 5.4:-69332889 | None:intergenic |
GAGATTTGGGGAAGCCGTTA+GGG | 0.461727 | 5.4:+69322616 | MS.gene39793:CDS |
CGATGTGAAAGTTGAGGATA+GGG | 0.461810 | 5.4:+69322839 | MS.gene39793:CDS |
TGTAGGGATGGAGAGTGAGC+AGG | 0.463391 | 5.4:+69322695 | MS.gene39793:CDS |
GGATGCATATGAGAAGGCTT+TGG | 0.465775 | 5.4:+69323064 | MS.gene39793:CDS |
AGACACCATGCAAGCGGCGA+AGG | 0.466308 | 5.4:-69327695 | None:intergenic |
TGCTGAAATCGAGCGAAGAA+TGG | 0.469267 | 5.4:-69327736 | None:intergenic |
GTTAAGCAAAATTCATGGTA+TGG | 0.470540 | 5.4:+69322561 | MS.gene39793:CDS |
TAGTTGATCAAGTGAACAAC+GGG | 0.471866 | 5.4:+69329762 | MS.gene39793:CDS |
AAAGTCGTTGCTTCTGTTGG+TGG | 0.477361 | 5.4:+69333204 | MS.gene39793:CDS |
CTTGCACAGGAGTTTGAGCA+GGG | 0.484759 | 5.4:+69325792 | MS.gene39793:intron |
TGATTGTAGAGCAAGGCGTT+TGG | 0.485204 | 5.4:-69333130 | None:intergenic |
GCTAAATACGACGCTTCTGC+TGG | 0.488866 | 5.4:+69333174 | MS.gene39793:CDS |
GGAAGACGGTGGATGATGTA+TGG | 0.489215 | 5.4:+69322778 | MS.gene39793:CDS |
CCAGATCTTTCTGTTGAACC+AGG | 0.490018 | 5.4:+69333399 | MS.gene39793:CDS |
TATTAGTCCGACGGTGGGGT+TGG | 0.490449 | 5.4:+69322929 | MS.gene39793:CDS |
CACACCCTTCGCCGCTTGCA+TGG | 0.496820 | 5.4:+69327690 | MS.gene39793:CDS |
GGGTCTCGGTGGTACGACTT+TGG | 0.498535 | 5.4:+69322866 | MS.gene39793:CDS |
ACGATGTGAAAGTTGAGGAT+AGG | 0.500216 | 5.4:+69322838 | MS.gene39793:CDS |
ACAATGGGTTCTCAAAGTAA+TGG | 0.500285 | 5.4:+69322507 | None:intergenic |
CTTTCTCCTGTTATAGAGTG+TGG | 0.507970 | 5.4:-69329654 | None:intergenic |
ATCGTCTTCTCTTCAACGGC+AGG | 0.510272 | 5.4:+69322725 | MS.gene39793:CDS |
GCTTCTATTAGTCCGACGGT+GGG | 0.511307 | 5.4:+69322924 | MS.gene39793:CDS |
CAAACTACTAATTGAAGAAG+AGG | 0.512419 | 5.4:-69323006 | None:intergenic |
GACGGTGGGGTTGGATGCAA+TGG | 0.513361 | 5.4:+69322938 | MS.gene39793:CDS |
GCGCCTTTCGTAACACAACC+TGG | 0.513475 | 5.4:-69333417 | None:intergenic |
CTGTTCTAGCAGAGTAACCT+TGG | 0.515075 | 5.4:-69323297 | None:intergenic |
AGGTCGCAAAAGGGATGCTC+CGG | 0.515870 | 5.4:+69323043 | MS.gene39793:CDS |
CTTTCAACCGAAAACAAGCT+TGG | 0.516273 | 5.4:+69322980 | MS.gene39793:CDS |
ACTTCAGTGTTTATAGGCCA+TGG | 0.516872 | 5.4:-69329728 | None:intergenic |
CTGAAGGAAATAAGGTTGTA+GGG | 0.518539 | 5.4:+69322679 | MS.gene39793:CDS |
CCTGAGTCGGCAATTGGAAT+CGG | 0.519941 | 5.4:+69333828 | MS.gene39793:CDS |
TGCATCAAATTAATCACCTC+AGG | 0.520470 | 5.4:-69333666 | None:intergenic |
GCAGGCTTACCATAATGAAC+TGG | 0.521206 | 5.4:+69323271 | MS.gene39793:intron |
AGGAAATAAGGTTGTAGGGA+TGG | 0.523139 | 5.4:+69322683 | MS.gene39793:CDS |
CCTGGTTCAACAGAAAGATC+TGG | 0.524750 | 5.4:-69333399 | None:intergenic |
CCCTCGTCGCTGCTAGTGCA+TGG | 0.525304 | 5.4:-69327768 | None:intergenic |
CGTCATCGTCTTCTCTTCAA+CGG | 0.525850 | 5.4:+69322721 | MS.gene39793:CDS |
CTTTGGAAAGGAGGCTGAGA+AGG | 0.527338 | 5.4:+69323081 | MS.gene39793:CDS |
GAGGATAGGGAAATGGGTCT+CGG | 0.530192 | 5.4:+69322852 | MS.gene39793:CDS |
TGCAAAATCAGGTCGCAAAA+GGG | 0.532164 | 5.4:+69323034 | MS.gene39793:CDS |
AGAAGCATGGGAGGACCTCA+AGG | 0.533370 | 5.4:+69333629 | MS.gene39793:CDS |
CCGATTCCAATTGCCGACTC+AGG | 0.534994 | 5.4:-69333828 | None:intergenic |
AGATTTGAAGAATCAGCTGT+TGG | 0.535356 | 5.4:+69333770 | MS.gene39793:CDS |
AAAGCCTTCTCATATGCATC+CGG | 0.537373 | 5.4:-69323062 | None:intergenic |
AAATCATTCACGGATATAAG+TGG | 0.538546 | 5.4:-69332907 | None:intergenic |
ACTAGCAGCGACGAGGGTAA+AGG | 0.539010 | 5.4:+69327774 | MS.gene39793:CDS |
AAGTCGTTGCTTCTGTTGGT+GGG | 0.542109 | 5.4:+69333205 | MS.gene39793:CDS |
GATTCTTCTCTTGGAACAAG+TGG | 0.543209 | 5.4:+69333084 | MS.gene39793:CDS |
AAATCTGTGGATCCTTCTAT+GGG | 0.548338 | 5.4:+69333357 | MS.gene39793:CDS |
AGTAAAGTCGTTGCTTCTGT+TGG | 0.548366 | 5.4:+69333201 | MS.gene39793:CDS |
GATGAGGTTAATAGTCTACT+AGG | 0.549320 | 5.4:+69322594 | MS.gene39793:CDS |
GAATAAGACAACTGCCATTG+AGG | 0.549728 | 5.4:-69332954 | None:intergenic |
GAGTTAGGCTACTTCCTCAA+TGG | 0.552454 | 5.4:+69332940 | MS.gene39793:CDS |
TAAGGAAATCAAAGAAGCAT+GGG | 0.556914 | 5.4:+69333617 | MS.gene39793:CDS |
CAGAATGTGTGGACTGCTGA+AGG | 0.557306 | 5.4:+69322663 | MS.gene39793:CDS |
TCTTCTCTTGGAACAAGTGG+TGG | 0.557408 | 5.4:+69333087 | MS.gene39793:CDS |
AACAATAACCTTCACTTGTG+CGG | 0.565346 | 5.4:-69327819 | None:intergenic |
GACACCATGCAAGCGGCGAA+GGG | 0.566593 | 5.4:-69327694 | None:intergenic |
CTGATGAAGAAAACGTGGAT+TGG | 0.570025 | 5.4:+69333576 | MS.gene39793:CDS |
ATGAGAAGGCTTTGGAAAGG+AGG | 0.572932 | 5.4:+69323072 | MS.gene39793:CDS |
TTAAGGAAATCAAAGAAGCA+TGG | 0.573247 | 5.4:+69333616 | MS.gene39793:CDS |
TGGAGACGATGTGAAAGTTG+AGG | 0.573499 | 5.4:+69322833 | MS.gene39793:CDS |
TGGGAAGGTTGTTGAGTGCA+GGG | 0.575987 | 5.4:+69333716 | MS.gene39793:CDS |
TGGAGCTTCTATTAGTCCGA+CGG | 0.576977 | 5.4:+69322920 | MS.gene39793:CDS |
AGCTTCTATTAGTCCGACGG+TGG | 0.577860 | 5.4:+69322923 | MS.gene39793:CDS |
ACGAGCTTCTTCAGAATGTG+TGG | 0.579972 | 5.4:+69322652 | MS.gene39793:CDS |
CTTGCTCTACAATCAGCTGC+TGG | 0.583336 | 5.4:+69333138 | MS.gene39793:CDS |
CGTTGGCTCGTGCTTTGAGT+GGG | 0.589340 | 5.4:+69322757 | MS.gene39793:CDS |
TCGTGCTTTGAGTGGGAAGA+CGG | 0.590102 | 5.4:+69322764 | MS.gene39793:CDS |
ACGTTGGCTCGTGCTTTGAG+TGG | 0.590747 | 5.4:+69322756 | MS.gene39793:CDS |
CTATGTTGAGGAACCTGAGT+CGG | 0.592649 | 5.4:+69333815 | MS.gene39793:CDS |
TTGTGTTACGAAAGGCGCTA+AGG | 0.597928 | 5.4:+69333422 | MS.gene39793:CDS |
CTGCCCTGATGAAGAAAACG+TGG | 0.598070 | 5.4:+69333571 | MS.gene39793:CDS |
GAACCAGGTTGTGTTACGAA+AGG | 0.598355 | 5.4:+69333414 | MS.gene39793:CDS |
TCAAGATTCATGCTCCCTAA+CGG | 0.602234 | 5.4:-69322630 | None:intergenic |
TGATAACTAACCACAGGTAA+CGG | 0.606825 | 5.4:-69329792 | None:intergenic |
CATTCACGGATATAAGTGGC+GGG | 0.609828 | 5.4:-69332903 | None:intergenic |
CGGAGCAGACACCATGCAAG+CGG | 0.610864 | 5.4:-69327701 | None:intergenic |
CCATAATGAACTGGTTACCA+AGG | 0.615234 | 5.4:+69323280 | MS.gene39793:CDS |
TTATCTTGAAGCGCATACCA+TGG | 0.615897 | 5.4:+69329711 | MS.gene39793:CDS |
GTATGGTCTAACTCTTGATG+AGG | 0.618117 | 5.4:+69322578 | MS.gene39793:CDS |
AAATACGACGCTTCTGCTGG+TGG | 0.618287 | 5.4:+69333177 | MS.gene39793:CDS |
CTTCTATTAGTCCGACGGTG+GGG | 0.618855 | 5.4:+69322925 | MS.gene39793:CDS |
TGAAGCAGCAAGCTATGTTG+AGG | 0.619456 | 5.4:+69333803 | MS.gene39793:CDS |
AAAGCTAGTGCTTCTGATGG+CGG | 0.620664 | 5.4:+69333294 | MS.gene39793:CDS |
TGGCGGGACATCAAGCTTTG+GGG | 0.621361 | 5.4:-69332887 | None:intergenic |
CCATGCACTAGCAGCGACGA+GGG | 0.623257 | 5.4:+69327768 | MS.gene39793:CDS |
CAGAACTTACTCTTCGAAGA+CGG | 0.629693 | 5.4:-69325848 | None:intergenic |
GGAAATCAAAGAAGCATGGG+AGG | 0.632778 | 5.4:+69333620 | MS.gene39793:CDS |
CAGCAGCTGATTGTAGAGCA+AGG | 0.633281 | 5.4:-69333137 | None:intergenic |
TGCTCCGGATGCATATGAGA+AGG | 0.633586 | 5.4:+69323058 | MS.gene39793:CDS |
TTGAAAGCTTTGAGGAATAG+CGG | 0.633827 | 5.4:-69322964 | None:intergenic |
TATGCAGCTCAAGAAAGAGA+AGG | 0.635674 | 5.4:+69323325 | MS.gene39793:CDS |
ACCAAAGCTAGTGCTTCTGA+TGG | 0.640233 | 5.4:+69333291 | MS.gene39793:CDS |
TCATTCACGGATATAAGTGG+CGG | 0.647640 | 5.4:-69332904 | None:intergenic |
TCCATGCACTAGCAGCGACG+AGG | 0.648797 | 5.4:+69327767 | MS.gene39793:CDS |
TGCTTTGAGTGGGAAGACGG+TGG | 0.649656 | 5.4:+69322767 | MS.gene39793:CDS |
ATTGCATCCAACCCCACCGT+CGG | 0.650426 | 5.4:-69322936 | None:intergenic |
CATATGAGAAGGCTTTGGAA+AGG | 0.652484 | 5.4:+69323069 | MS.gene39793:CDS |
GATAGGGAAATGGGTCTCGG+TGG | 0.652593 | 5.4:+69322855 | MS.gene39793:CDS |
GTATGGAGAGAAATCCAGCT+AGG | 0.652627 | 5.4:+69322795 | MS.gene39793:CDS |
GAAAACACTCTATCCATTTG+GGG | 0.667087 | 5.4:-69333690 | None:intergenic |
GAAGCATGGGAGGACCTCAA+GGG | 0.667583 | 5.4:+69333630 | MS.gene39793:CDS |
ACGGCAGGCTAGTATGACGT+TGG | 0.673052 | 5.4:+69322740 | MS.gene39793:CDS |
CTAGTTGATCAAGTGAACAA+CGG | 0.675401 | 5.4:+69329761 | MS.gene39793:CDS |
GGGCTGAATACCGTTACCTG+TGG | 0.680442 | 5.4:+69329782 | MS.gene39793:CDS |
GAACTTCATGAAAACCCTTG+AGG | 0.683462 | 5.4:-69333644 | None:intergenic |
ATAGTCTACTAGGAGATTTG+GGG | 0.688137 | 5.4:+69322604 | MS.gene39793:CDS |
TTGCACAGGAGTTTGAGCAG+GGG | 0.710311 | 5.4:+69325793 | MS.gene39793:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.4 | gene | 69322510 | 69333860 | 69322510 | ID=MS.gene39793 |
chr5.4 | mRNA | 69322510 | 69333860 | 69322510 | ID=MS.gene39793.t1;Parent=MS.gene39793 |
chr5.4 | exon | 69322510 | 69323151 | 69322510 | ID=MS.gene39793.t1.exon1;Parent=MS.gene39793.t1 |
chr5.4 | CDS | 69322510 | 69323151 | 69322510 | ID=cds.MS.gene39793.t1;Parent=MS.gene39793.t1 |
chr5.4 | exon | 69323275 | 69323346 | 69323275 | ID=MS.gene39793.t1.exon2;Parent=MS.gene39793.t1 |
chr5.4 | CDS | 69323275 | 69323346 | 69323275 | ID=cds.MS.gene39793.t1;Parent=MS.gene39793.t1 |
chr5.4 | exon | 69325801 | 69325860 | 69325801 | ID=MS.gene39793.t1.exon3;Parent=MS.gene39793.t1 |
chr5.4 | CDS | 69325801 | 69325860 | 69325801 | ID=cds.MS.gene39793.t1;Parent=MS.gene39793.t1 |
chr5.4 | exon | 69327690 | 69327826 | 69327690 | ID=MS.gene39793.t1.exon4;Parent=MS.gene39793.t1 |
chr5.4 | CDS | 69327690 | 69327826 | 69327690 | ID=cds.MS.gene39793.t1;Parent=MS.gene39793.t1 |
chr5.4 | exon | 69329649 | 69329803 | 69329649 | ID=MS.gene39793.t1.exon5;Parent=MS.gene39793.t1 |
chr5.4 | CDS | 69329649 | 69329803 | 69329649 | ID=cds.MS.gene39793.t1;Parent=MS.gene39793.t1 |
chr5.4 | exon | 69332860 | 69333860 | 69332860 | ID=MS.gene39793.t1.exon6;Parent=MS.gene39793.t1 |
chr5.4 | CDS | 69332860 | 69333860 | 69332860 | ID=cds.MS.gene39793.t1;Parent=MS.gene39793.t1 |
Gene Sequence |
Protein sequence |