Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41377.t1 | XP_003592342.3 | 99.1 | 231 | 2 | 0 | 1 | 231 | 54 | 284 | 5.60E-128 | 466.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41377.t1 | I3SR39 | 99.1 | 231 | 2 | 0 | 1 | 231 | 54 | 284 | 4.1e-128 | 466.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049378 | MS.gene41377 | 0.815359 | 9.63E-52 | -1.69E-46 |
| MS.gene050226 | MS.gene41377 | 0.814941 | 1.19E-51 | -1.69E-46 |
| MS.gene050227 | MS.gene41377 | 0.825013 | 5.91E-54 | -1.69E-46 |
| MS.gene050228 | MS.gene41377 | 0.836076 | 1.16E-56 | -1.69E-46 |
| MS.gene050623 | MS.gene41377 | -0.851692 | 7.52E-61 | -1.69E-46 |
| MS.gene050642 | MS.gene41377 | 0.841924 | 3.54E-58 | -1.69E-46 |
| MS.gene051983 | MS.gene41377 | 0.83765 | 4.59E-57 | -1.69E-46 |
| MS.gene052176 | MS.gene41377 | 0.825483 | 4.57E-54 | -1.69E-46 |
| MS.gene052286 | MS.gene41377 | 0.802224 | 6.21E-49 | -1.69E-46 |
| MS.gene052302 | MS.gene41377 | 0.803282 | 3.76E-49 | -1.69E-46 |
| MS.gene052309 | MS.gene41377 | -0.849266 | 3.61E-60 | -1.69E-46 |
| MS.gene052376 | MS.gene41377 | 0.807646 | 4.57E-50 | -1.69E-46 |
| MS.gene053216 | MS.gene41377 | 0.805787 | 1.13E-49 | -1.69E-46 |
| MS.gene055441 | MS.gene41377 | 0.806892 | 6.60E-50 | -1.69E-46 |
| MS.gene055701 | MS.gene41377 | 0.804386 | 2.21E-49 | -1.69E-46 |
| MS.gene056552 | MS.gene41377 | 0.804103 | 2.54E-49 | -1.69E-46 |
| MS.gene056979 | MS.gene41377 | 0.838465 | 2.83E-57 | -1.69E-46 |
| MS.gene058182 | MS.gene41377 | 0.80339 | 3.57E-49 | -1.69E-46 |
| MS.gene058238 | MS.gene41377 | 0.80202 | 6.84E-49 | -1.69E-46 |
| MS.gene058399 | MS.gene41377 | 0.810212 | 1.29E-50 | -1.69E-46 |
| MS.gene059830 | MS.gene41377 | 0.807863 | 4.11E-50 | -1.69E-46 |
| MS.gene060084 | MS.gene41377 | 0.816183 | 6.31E-52 | -1.69E-46 |
| MS.gene060297 | MS.gene41377 | 0.847916 | 8.54E-60 | -1.69E-46 |
| MS.gene060586 | MS.gene41377 | 0.807686 | 4.48E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41377.t1 | MTR_1g101840 | 97.143 | 140 | 4 | 0 | 92 | 231 | 14 | 153 | 3.02e-96 | 278 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41377.t1 | AT5G51880 | 67.965 | 231 | 70 | 2 | 1 | 231 | 24 | 250 | 1.27e-106 | 308 |
Find 45 sgRNAs with CRISPR-Local
Find 147 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACACCTTTGGTAACATTTC+TGG | 0.127833 | 1.4:+78983378 | None:intergenic |
| AACCTATATAATCTAATATT+TGG | 0.132507 | 1.4:+78985431 | None:intergenic |
| CTGTTCTTGCTGATTCTATT+TGG | 0.169459 | 1.4:-78985520 | MS.gene41377:CDS |
| GCTGATTCTATTTGGGATTC+TGG | 0.178268 | 1.4:-78985512 | MS.gene41377:CDS |
| GGTTTGATGGAAGGCCATTT+TGG | 0.200195 | 1.4:+78985818 | None:intergenic |
| TGTTCTTGCTGATTCTATTT+GGG | 0.287853 | 1.4:-78985519 | MS.gene41377:CDS |
| TTTACTCATCAAGGTAGTTT+AGG | 0.298381 | 1.4:-78985596 | MS.gene41377:CDS |
| AAACAACAACCGACCCAAAA+TGG | 0.337133 | 1.4:-78985832 | MS.gene41377:CDS |
| ATTGAAACTGCTGAGGGAAT+TGG | 0.349090 | 1.4:-78985620 | MS.gene41377:CDS |
| TAGAGATAATGATCGAATTT+CGG | 0.362145 | 1.4:-78985552 | MS.gene41377:CDS |
| GGAGGAGAAACAGTCTTCTA+TGG | 0.362711 | 1.4:-78984283 | MS.gene41377:CDS |
| AGATGAATCTGTAGGTTTGC+TGG | 0.376051 | 1.4:+78984321 | None:intergenic |
| TCATCTTCTGATCGTTTAGT+TGG | 0.379584 | 1.4:-78984304 | MS.gene41377:CDS |
| TACAAAGTTGGTCAACGGTT+TGG | 0.409112 | 1.4:-78984457 | MS.gene41377:CDS |
| ATGGCACTCTTGCACATTCA+TGG | 0.434758 | 1.4:-78983424 | MS.gene41377:CDS |
| CAAGAGTGCCATCCCTTCAA+TGG | 0.441258 | 1.4:+78983435 | None:intergenic |
| ATCGATGAGAGTAATGATCT+TGG | 0.448560 | 1.4:-78984427 | MS.gene41377:CDS |
| CTATAAGCTTCACCTTTAGC+TGG | 0.453796 | 1.4:+78985572 | None:intergenic |
| CAAATAGAATCAGCAAGAAC+AGG | 0.457794 | 1.4:+78985521 | None:intergenic |
| ATCCAAATATTAGATTATAT+AGG | 0.468123 | 1.4:-78985433 | MS.gene41377:intron |
| ACGAGATTTCGATCTCTTCA+CGG | 0.469965 | 1.4:-78985768 | MS.gene41377:intron |
| TCTTCTGATCGTTTAGTTGG+AGG | 0.471044 | 1.4:-78984301 | MS.gene41377:CDS |
| AAGAAATAGCATTGTGGCTG+AGG | 0.471528 | 1.4:-78984257 | MS.gene41377:intron |
| TGTAAAATATGTCTTTCGTT+CGG | 0.480181 | 1.4:-78983359 | MS.gene41377:CDS |
| TTACAGGTTGCTCCCATTGA+AGG | 0.491280 | 1.4:-78983448 | MS.gene41377:intron |
| TTGCTAGTTTATTTGAGTGG+TGG | 0.514398 | 1.4:-78984379 | MS.gene41377:CDS |
| TCGGATGTTGTATTTGCTTG+AGG | 0.515517 | 1.4:-78983340 | None:intergenic |
| GCCTTGGATTTAACTTCACC+AGG | 0.523946 | 1.4:+78984355 | None:intergenic |
| ACTTTGCTAGTTTATTTGAG+TGG | 0.528948 | 1.4:-78984382 | MS.gene41377:CDS |
| TTGTATTTCAGGTACAAAGT+TGG | 0.529640 | 1.4:-78984469 | MS.gene41377:intron |
| AAGAGTGCCATCCCTTCAAT+GGG | 0.530149 | 1.4:+78983436 | None:intergenic |
| GTTTATTTGAGTGGTGGACC+TGG | 0.532494 | 1.4:-78984373 | MS.gene41377:CDS |
| GAGAGTAATGATCTTGGAGA+TGG | 0.540105 | 1.4:-78984421 | MS.gene41377:CDS |
| TACAGGTTGCTCCCATTGAA+GGG | 0.545508 | 1.4:-78983447 | MS.gene41377:intron |
| GGTAGTTTAGGTCCAGCTAA+AGG | 0.579515 | 1.4:-78985584 | MS.gene41377:CDS |
| CGATCAGAAGATGAATCTGT+AGG | 0.582135 | 1.4:+78984313 | None:intergenic |
| TCAGGTACAAAGTTGGTCAA+CGG | 0.585507 | 1.4:-78984462 | MS.gene41377:intron |
| GGTTGCTCCCATTGAAGGGA+TGG | 0.588083 | 1.4:-78983443 | MS.gene41377:CDS |
| GGCATTCATTGAAACTGCTG+AGG | 0.593567 | 1.4:-78985627 | MS.gene41377:CDS |
| ACCTGGTGAAGTTAAATCCA+AGG | 0.602043 | 1.4:-78984356 | MS.gene41377:CDS |
| ATTCGAGGGAAAGCTGCTGT+AGG | 0.610629 | 1.4:-78985461 | MS.gene41377:CDS |
| GCATTCATTGAAACTGCTGA+GGG | 0.636238 | 1.4:-78985626 | MS.gene41377:CDS |
| TTTCTGATATAAGAATTCGA+GGG | 0.649354 | 1.4:-78985475 | MS.gene41377:CDS |
| GAAGCCAGAAATGTTACCAA+AGG | 0.654558 | 1.4:-78983382 | MS.gene41377:CDS |
| TGGTTCAAGAAATAGCATTG+TGG | 0.705639 | 1.4:-78984263 | MS.gene41377:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTAAAATATATATTTTAT+CGG | + | chr1.4:78985537-78985556 | None:intergenic | 0.0% |
| !! | AACCTATATAATCTAATATT+TGG | + | chr1.4:78983762-78983781 | None:intergenic | 15.0% |
| !! | AATAATTCACAGATAAAATT+GGG | + | chr1.4:78983486-78983505 | None:intergenic | 15.0% |
| !! | ATATAAATAGCTTATACATA+AGG | - | chr1.4:78984469-78984488 | MS.gene41377:intron | 15.0% |
| !! | ATCCAAATATTAGATTATAT+AGG | - | chr1.4:78983757-78983776 | MS.gene41377:intron | 15.0% |
| !! | TAATAATTCACAGATAAAAT+TGG | + | chr1.4:78983487-78983506 | None:intergenic | 15.0% |
| !! | TATAAATAGCTTATACATAA+GGG | - | chr1.4:78984470-78984489 | MS.gene41377:intron | 15.0% |
| !!! | CAAATTAAGTATTATGATTT+TGG | + | chr1.4:78985371-78985390 | None:intergenic | 15.0% |
| !!! | TCTATTTTCATTTATATGTT+AGG | - | chr1.4:78985255-78985274 | MS.gene41377:intron | 15.0% |
| !! | ATAAGCTATTTATATAGCAA+AGG | + | chr1.4:78984464-78984483 | None:intergenic | 20.0% |
| !! | TGCTATAAATGTTTAGTTAA+GGG | - | chr1.4:78984057-78984076 | MS.gene41377:intron | 20.0% |
| !! | TTGCTATAAATGTTTAGTTA+AGG | - | chr1.4:78984056-78984075 | MS.gene41377:intron | 20.0% |
| !!! | ACGCGAAATTTTTAAAATTT+AGG | - | chr1.4:78985056-78985075 | MS.gene41377:intron | 20.0% |
| !!! | ATTAAGTATTATGATTTTGG+TGG | + | chr1.4:78985368-78985387 | None:intergenic | 20.0% |
| !!! | GATTATTGTATAGTTCTATA+AGG | - | chr1.4:78983816-78983835 | MS.gene41377:intron | 20.0% |
| !!! | TGATACAATTTTGATTTTAC+AGG | - | chr1.4:78985726-78985745 | MS.gene41377:intron | 20.0% |
| !!! | TTAAAATTTAGGATACGATA+CGG | - | chr1.4:78985067-78985086 | MS.gene41377:intron | 20.0% |
| !!! | TTTAAAATTATTAGCTGTGT+CGG | + | chr1.4:78984235-78984254 | None:intergenic | 20.0% |
| !!! | TTTGTACACTTCATTTTTTT+TGG | - | chr1.4:78985449-78985468 | MS.gene41377:CDS | 20.0% |
| ! | AATAAGCTATTTATCCAAAC+AGG | - | chr1.4:78984527-78984546 | MS.gene41377:intron | 25.0% |
| ! | ACACATGATGTCTTTAAATT+TGG | - | chr1.4:78984651-78984670 | MS.gene41377:intron | 25.0% |
| ! | ATAAGCTATTTATCCAAACA+GGG | - | chr1.4:78984528-78984547 | MS.gene41377:intron | 25.0% |
| ! | ATAATTAATTCCGATACTTC+TGG | - | chr1.4:78985561-78985580 | MS.gene41377:CDS | 25.0% |
| ! | TAATTAATTCCGATACTTCT+GGG | - | chr1.4:78985562-78985581 | MS.gene41377:CDS | 25.0% |
| ! | TACAAAAAATGCATGACAAT+TGG | + | chr1.4:78984706-78984725 | None:intergenic | 25.0% |
| ! | TAGAGATAATGATCGAATTT+CGG | - | chr1.4:78983638-78983657 | MS.gene41377:intron | 25.0% |
| ! | TGTAAAATATGTCTTTCGTT+CGG | - | chr1.4:78985831-78985850 | MS.gene41377:CDS | 25.0% |
| ! | TTTCTGATATAAGAATTCGA+GGG | - | chr1.4:78983715-78983734 | MS.gene41377:intron | 25.0% |
| !! | AAAGACATATTTTACACCTT+TGG | + | chr1.4:78985827-78985846 | None:intergenic | 25.0% |
| !! | CTTTTCATCTTATGAATCAA+AGG | - | chr1.4:78983542-78983561 | MS.gene41377:intron | 25.0% |
| !! | GTGTTTTCAATTGATTAAGA+AGG | + | chr1.4:78984635-78984654 | None:intergenic | 25.0% |
| !! | TTTTCTGATATAAGAATTCG+AGG | - | chr1.4:78983714-78983733 | MS.gene41377:intron | 25.0% |
| !!! | CTTATTTTGATGATTTTTCC+AGG | - | chr1.4:78983509-78983528 | MS.gene41377:intron | 25.0% |
| !!! | TCATGCATTTTTTGTATTTC+AGG | - | chr1.4:78984710-78984729 | MS.gene41377:intron | 25.0% |
| ATGAAAAGAAATTCTGAACC+TGG | + | chr1.4:78983530-78983549 | None:intergenic | 30.0% | |
| CTAAGTTGTTTATGCAAACA+AGG | - | chr1.4:78984552-78984571 | MS.gene41377:intron | 30.0% | |
| GATACTTAAAAGATACTCGA+CGG | + | chr1.4:78985515-78985534 | None:intergenic | 30.0% | |
| TAAGCTATTTATCCAAACAG+GGG | - | chr1.4:78984529-78984548 | MS.gene41377:intron | 30.0% | |
| TATTCATAAGCTATGAAGCA+CGG | - | chr1.4:78984168-78984187 | MS.gene41377:intron | 30.0% | |
| TCAACTAAGTTAATCCAAAC+AGG | + | chr1.4:78983843-78983862 | None:intergenic | 30.0% | |
| TGGGAAAAGAAAAAGAAGAA+GGG | + | chr1.4:78983467-78983486 | None:intergenic | 30.0% | |
| TTGGGAAAAGAAAAAGAAGA+AGG | + | chr1.4:78983468-78983487 | None:intergenic | 30.0% | |
| TTTACTCATCAAGGTAGTTT+AGG | - | chr1.4:78983594-78983613 | MS.gene41377:intron | 30.0% | |
| ! | ACTTTGCTAGTTTATTTGAG+TGG | - | chr1.4:78984808-78984827 | MS.gene41377:intron | 30.0% |
| ! | AGTGATGTGAAGATTGTTTT+TGG | + | chr1.4:78983397-78983416 | None:intergenic | 30.0% |
| ! | TTCAGTGTAATTAGAAGTGT+CGG | - | chr1.4:78984266-78984285 | MS.gene41377:CDS | 30.0% |
| ! | TTGTATTTCAGGTACAAAGT+TGG | - | chr1.4:78984721-78984740 | MS.gene41377:intron | 30.0% |
| !! | ATGTTGCTTAATGCAAGTTT+TGG | - | chr1.4:78985675-78985694 | MS.gene41377:intron | 30.0% |
| !! | GTGATGTGAAGATTGTTTTT+GGG | + | chr1.4:78983396-78983415 | None:intergenic | 30.0% |
| !! | TGTTCTTGCTGATTCTATTT+GGG | - | chr1.4:78983671-78983690 | MS.gene41377:intron | 30.0% |
| !! | TGTTGCTTAATGCAAGTTTT+GGG | - | chr1.4:78985676-78985695 | MS.gene41377:intron | 30.0% |
| !!! | AAGATTGTTTTTGGGTTTGA+TGG | + | chr1.4:78983388-78983407 | None:intergenic | 30.0% |
| AAATGCATGACAATTGGTGA+AGG | + | chr1.4:78984700-78984719 | None:intergenic | 35.0% | |
| AGCTTATGAACTATGAAGCA+CGG | + | chr1.4:78984355-78984374 | None:intergenic | 35.0% | |
| ATCGATGAGAGTAATGATCT+TGG | - | chr1.4:78984763-78984782 | MS.gene41377:intron | 35.0% | |
| ATGTCACTATTTGCTTGCTT+TGG | - | chr1.4:78985699-78985718 | MS.gene41377:intron | 35.0% | |
| CAAATAGAATCAGCAAGAAC+AGG | + | chr1.4:78983672-78983691 | None:intergenic | 35.0% | |
| GAGCTATCATAAAGAGCTTA+CGG | + | chr1.4:78983938-78983957 | None:intergenic | 35.0% | |
| TCATCTTCTGATCGTTTAGT+TGG | - | chr1.4:78984886-78984905 | MS.gene41377:intron | 35.0% | |
| TGGTTCAAGAAATAGCATTG+TGG | - | chr1.4:78984927-78984946 | MS.gene41377:intron | 35.0% | |
| TGTCACTATTTGCTTGCTTT+GGG | - | chr1.4:78985700-78985719 | MS.gene41377:intron | 35.0% | |
| TGTTTAGTTAAGGGTCTGTT+TGG | - | chr1.4:78984066-78984085 | MS.gene41377:intron | 35.0% | |
| ! | ACTTGTTTGGGTTTATCTAC+CGG | - | chr1.4:78984093-78984112 | MS.gene41377:intron | 35.0% |
| ! | CAGTCTCTGAAAATTTCTAC+CGG | + | chr1.4:78984115-78984134 | None:intergenic | 35.0% |
| ! | GAAATTTTCAGAGACTGTTC+AGG | - | chr1.4:78984118-78984137 | MS.gene41377:intron | 35.0% |
| ! | TACACCTTTGGTAACATTTC+TGG | + | chr1.4:78985815-78985834 | None:intergenic | 35.0% |
| ! | TAGTTCTATAAGGACCTGTT+TGG | - | chr1.4:78983826-78983845 | MS.gene41377:intron | 35.0% |
| ! | TTGCTAGTTTATTTGAGTGG+TGG | - | chr1.4:78984811-78984830 | MS.gene41377:intron | 35.0% |
| !! | CTGTTCTTGCTGATTCTATT+TGG | - | chr1.4:78983670-78983689 | MS.gene41377:intron | 35.0% |
| !! | CTGTTTGGATTGACTTGTTT+GGG | - | chr1.4:78984081-78984100 | MS.gene41377:intron | 35.0% |
| !! | GCTGTTTTCATAAGCTATCT+TGG | + | chr1.4:78984404-78984423 | None:intergenic | 35.0% |
| !! | TCTGTTTGGATTGACTTGTT+TGG | - | chr1.4:78984080-78984099 | MS.gene41377:intron | 35.0% |
| !!! | GGAATTGGTTTTACTCATCA+AGG | - | chr1.4:78983585-78983604 | MS.gene41377:intron | 35.0% |
| !!! | TTGTTTTTGGGTTTGATGGA+AGG | + | chr1.4:78983384-78983403 | None:intergenic | 35.0% |
| AAACAACAACCGACCCAAAA+TGG | - | chr1.4:78983358-78983377 | MS.gene41377:CDS | 40.0% | |
| AAGAAATAGCATTGTGGCTG+AGG | - | chr1.4:78984933-78984952 | MS.gene41377:intron | 40.0% | |
| ACCTGGTGAAGTTAAATCCA+AGG | - | chr1.4:78984834-78984853 | MS.gene41377:intron | 40.0% | |
| ACGAGATTTCGATCTCTTCA+CGG | - | chr1.4:78983422-78983441 | MS.gene41377:CDS | 40.0% | |
| AGATGAATCTGTAGGTTTGC+TGG | + | chr1.4:78984872-78984891 | None:intergenic | 40.0% | |
| ATTGAAACTGCTGAGGGAAT+TGG | - | chr1.4:78983570-78983589 | MS.gene41377:intron | 40.0% | |
| CGATCAGAAGATGAATCTGT+AGG | + | chr1.4:78984880-78984899 | None:intergenic | 40.0% | |
| CTATAAGCTTCACCTTTAGC+TGG | + | chr1.4:78983621-78983640 | None:intergenic | 40.0% | |
| GAAGCCAGAAATGTTACCAA+AGG | - | chr1.4:78985808-78985827 | MS.gene41377:CDS | 40.0% | |
| GAGAGTAATGATCTTGGAGA+TGG | - | chr1.4:78984769-78984788 | MS.gene41377:intron | 40.0% | |
| GCATTCATTGAAACTGCTGA+GGG | - | chr1.4:78983564-78983583 | MS.gene41377:intron | 40.0% | |
| TAAACAACTTAGCCCCTGTT+TGG | + | chr1.4:78984544-78984563 | None:intergenic | 40.0% | |
| TAAGCAACATCTATGAAGCC+CGG | + | chr1.4:78985665-78985684 | None:intergenic | 40.0% | |
| TAAGCTATGAAGCACGGATA+CGG | - | chr1.4:78984174-78984193 | MS.gene41377:intron | 40.0% | |
| TCTTCTGATCGTTTAGTTGG+AGG | - | chr1.4:78984889-78984908 | MS.gene41377:intron | 40.0% | |
| TGGATGAAAGTAACGAGAGA+GGG | + | chr1.4:78985348-78985367 | None:intergenic | 40.0% | |
| ! | ATACCGTATCCCAGAAGTAT+CGG | + | chr1.4:78985574-78985593 | None:intergenic | 40.0% |
| ! | GCTGATTCTATTTGGGATTC+TGG | - | chr1.4:78983678-78983697 | MS.gene41377:intron | 40.0% |
| ! | TACAAAGTTGGTCAACGGTT+TGG | - | chr1.4:78984733-78984752 | MS.gene41377:intron | 40.0% |
| ! | TCAGGTACAAAGTTGGTCAA+CGG | - | chr1.4:78984728-78984747 | MS.gene41377:intron | 40.0% |
| !! | ATTCCGATACTTCTGGGATA+CGG | - | chr1.4:78985568-78985587 | MS.gene41377:CDS | 40.0% |
| !! | GTTTGATGGAAGGCCATTTT+GGG | + | chr1.4:78983374-78983393 | None:intergenic | 40.0% |
| !!! | GCTGGAATCATTTTTAGCCT+TGG | + | chr1.4:78984854-78984873 | None:intergenic | 40.0% |
| ATACGGGTACGATACGATAC+GGG | - | chr1.4:78985024-78985043 | MS.gene41377:intron | 45.0% | |
| ATGGCACTCTTGCACATTCA+TGG | - | chr1.4:78985766-78985785 | MS.gene41377:intron | 45.0% | |
| GATACGGGTACGATACGATA+CGG | - | chr1.4:78985023-78985042 | MS.gene41377:intron | 45.0% | |
| GGAGGAGAAACAGTCTTCTA+TGG | - | chr1.4:78984907-78984926 | MS.gene41377:intron | 45.0% | |
| GGATGAAAGTAACGAGAGAG+GGG | + | chr1.4:78985347-78985366 | None:intergenic | 45.0% | |
| GGCATTCATTGAAACTGCTG+AGG | - | chr1.4:78983563-78983582 | MS.gene41377:intron | 45.0% | |
| GGTAGTTTAGGTCCAGCTAA+AGG | - | chr1.4:78983606-78983625 | MS.gene41377:intron | 45.0% | |
| GTGGATGAAAGTAACGAGAG+AGG | + | chr1.4:78985349-78985368 | None:intergenic | 45.0% | |
| TACAGGTTGCTCCCATTGAA+GGG | - | chr1.4:78985743-78985762 | MS.gene41377:intron | 45.0% | |
| TATCCGATACGTATCCGACA+CGG | - | chr1.4:78985617-78985636 | MS.gene41377:CDS | 45.0% | |
| TATCGGATACCGATACTTCG+CGG | + | chr1.4:78985606-78985625 | None:intergenic | 45.0% | |
| TGATGTTGCTCTATGAAGCC+CGG | - | chr1.4:78984989-78985008 | MS.gene41377:intron | 45.0% | |
| TTACAGGTTGCTCCCATTGA+AGG | - | chr1.4:78985742-78985761 | MS.gene41377:intron | 45.0% | |
| ! | GCCTTGGATTTAACTTCACC+AGG | + | chr1.4:78984838-78984857 | None:intergenic | 45.0% |
| ! | GGTTTGATGGAAGGCCATTT+TGG | + | chr1.4:78983375-78983394 | None:intergenic | 45.0% |
| !! | AAGAGTGCCATCCCTTCAAT+GGG | + | chr1.4:78985757-78985776 | None:intergenic | 45.0% |
| !! | GTTTATTTGAGTGGTGGACC+TGG | - | chr1.4:78984817-78984836 | MS.gene41377:intron | 45.0% |
| !! | TACTTCTGGGATACGGTATC+CGG | - | chr1.4:78985575-78985594 | MS.gene41377:CDS | 45.0% |
| ATACGTATCCGACACGGGTA+CGG | - | chr1.4:78985623-78985642 | MS.gene41377:CDS | 50.0% | |
| ATCCGATACGTATCCGACAC+GGG | - | chr1.4:78985618-78985637 | MS.gene41377:CDS | 50.0% | |
| ATGAAGCACGGATACGGACA+CGG | - | chr1.4:78984180-78984199 | MS.gene41377:intron | 50.0% | |
| ATTCGAGGGAAAGCTGCTGT+AGG | - | chr1.4:78983729-78983748 | MS.gene41377:intron | 50.0% | |
| GAAGCCCGGATACTCCAAAA+TGG | + | chr1.4:78985651-78985670 | None:intergenic | 50.0% | |
| TACCCGTGTCGGATACGTAT+CGG | + | chr1.4:78985623-78985642 | None:intergenic | 50.0% | |
| TATGAAGCACGGACACTCCT+AGG | + | chr1.4:78984344-78984363 | None:intergenic | 50.0% | |
| ! | TATTAGCTGTGTCGGCGTGT+CGG | + | chr1.4:78984227-78984246 | None:intergenic | 50.0% |
| !! | CAAGAGTGCCATCCCTTCAA+TGG | + | chr1.4:78985758-78985777 | None:intergenic | 50.0% |
| !! | GATGGAAGGCCATTTTGGGT+CGG | + | chr1.4:78983370-78983389 | None:intergenic | 50.0% |
| !! | TAGAAGTGTCGGTGTCGTGT+CGG | - | chr1.4:78984277-78984296 | MS.gene41377:CDS | 50.0% |
| !!! | CGGCACCATTTTGGAGTATC+CGG | - | chr1.4:78985643-78985662 | MS.gene41377:CDS | 50.0% |
| !!! | GGCACCATTTTGGAGTATCC+GGG | - | chr1.4:78985644-78985663 | MS.gene41377:CDS | 50.0% |
| CCCGGATACGTAGTGCGATA+CGG | - | chr1.4:78985007-78985026 | MS.gene41377:intron | 55.0% | |
| CCCGTATCGCACTACGTATC+CGG | + | chr1.4:78985011-78985030 | None:intergenic | 55.0% | |
| CCGATACTTCGCGGATACTC+CGG | + | chr1.4:78985597-78985616 | None:intergenic | 55.0% | |
| CCGGATACGTAGTGCGATAC+GGG | - | chr1.4:78985008-78985027 | MS.gene41377:intron | 55.0% | |
| CCGTATCGCACTACGTATCC+GGG | + | chr1.4:78985010-78985029 | None:intergenic | 55.0% | |
| GCACGGACACTCCTAGGATT+AGG | + | chr1.4:78984338-78984357 | None:intergenic | 55.0% | |
| GGTTGCTCCCATTGAAGGGA+TGG | - | chr1.4:78985747-78985766 | MS.gene41377:intron | 55.0% | |
| TCCTAGGATTAGGCGTGTCC+CGG | + | chr1.4:78984328-78984347 | None:intergenic | 55.0% | |
| ! | ACACGGGTACGGCACCATTT+TGG | - | chr1.4:78985634-78985653 | MS.gene41377:CDS | 55.0% |
| ! | CCGGAGTATCCGCGAAGTAT+CGG | - | chr1.4:78985594-78985613 | MS.gene41377:CDS | 55.0% |
| !! | AAATGGTGCCGTACCCGTGT+CGG | + | chr1.4:78985634-78985653 | None:intergenic | 55.0% |
| ACACGACACGTGTCCGACAC+CGG | - | chr1.4:78984306-78984325 | MS.gene41377:CDS | 60.0% | |
| ACCGGGACACGCCTAATCCT+AGG | - | chr1.4:78984324-78984343 | MS.gene41377:CDS | 60.0% | |
| ACGGATACGGACACGGACAC+CGG | - | chr1.4:78984187-78984206 | MS.gene41377:intron | 60.0% | |
| GATTAGGCGTGTCCCGGTGT+CGG | + | chr1.4:78984322-78984341 | None:intergenic | 60.0% | |
| !! | TGTCGGTGTCGTGTCGGTGT+CGG | - | chr1.4:78984283-78984302 | MS.gene41377:CDS | 60.0% |
| CACGACACGTGTCCGACACC+GGG | - | chr1.4:78984307-78984326 | MS.gene41377:CDS | 65.0% | |
| CACGGACACCGGACACGACA+CGG | - | chr1.4:78984198-78984217 | MS.gene41377:intron | 65.0% | |
| ! | GTCGGTGTCCGTGTCGTGTC+CGG | + | chr1.4:78984209-78984228 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 78983342 | 78985870 | 78983342 | ID=MS.gene41377 |
| chr1.4 | mRNA | 78983342 | 78985870 | 78983342 | ID=MS.gene41377.t1;Parent=MS.gene41377 |
| chr1.4 | exon | 78985769 | 78985870 | 78985769 | ID=MS.gene41377.t1.exon1;Parent=MS.gene41377.t1 |
| chr1.4 | CDS | 78985769 | 78985870 | 78985769 | ID=cds.MS.gene41377.t1;Parent=MS.gene41377.t1 |
| chr1.4 | exon | 78985434 | 78985681 | 78985434 | ID=MS.gene41377.t1.exon2;Parent=MS.gene41377.t1 |
| chr1.4 | CDS | 78985434 | 78985681 | 78985434 | ID=cds.MS.gene41377.t1;Parent=MS.gene41377.t1 |
| chr1.4 | exon | 78984258 | 78984480 | 78984258 | ID=MS.gene41377.t1.exon3;Parent=MS.gene41377.t1 |
| chr1.4 | CDS | 78984258 | 78984480 | 78984258 | ID=cds.MS.gene41377.t1;Parent=MS.gene41377.t1 |
| chr1.4 | exon | 78983342 | 78983464 | 78983342 | ID=MS.gene41377.t1.exon4;Parent=MS.gene41377.t1 |
| chr1.4 | CDS | 78983342 | 78983464 | 78983342 | ID=cds.MS.gene41377.t1;Parent=MS.gene41377.t1 |
| Gene Sequence |
| Protein sequence |
