Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43512.t1 | XP_003611535.1 | 98.8 | 481 | 5 | 1 | 1 | 480 | 1 | 481 | 2.20E-275 | 957.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43512.t1 | Q42881 | 75.3 | 477 | 109 | 4 | 1 | 477 | 1 | 468 | 4.7e-210 | 731.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43512.t1 | G7K167 | 98.8 | 481 | 5 | 1 | 1 | 480 | 1 | 481 | 1.6e-275 | 957.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene43512 | MS.gene75059 | PPI |
| MS.gene43512 | MS.gene06176 | PPI |
| MS.gene43512 | MS.gene06177 | PPI |
| MS.gene20161 | MS.gene43512 | PPI |
| MS.gene43512 | MS.gene049021 | PPI |
| MS.gene66342 | MS.gene43512 | PPI |
| MS.gene006416 | MS.gene43512 | PPI |
| MS.gene030294 | MS.gene43512 | PPI |
| MS.gene43512 | MS.gene66343 | PPI |
| MS.gene064035 | MS.gene43512 | PPI |
| MS.gene43512 | MS.gene55882 | PPI |
| MS.gene43512 | MS.gene006415 | PPI |
| MS.gene049022 | MS.gene43512 | PPI |
| MS.gene43512 | MS.gene20160 | PPI |
| MS.gene43512 | MS.gene55883 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43512.t1 | MTR_5g015020 | 98.753 | 481 | 5 | 1 | 1 | 480 | 1 | 481 | 0.0 | 991 |
| MS.gene43512.t1 | MTR_4g097540 | 83.368 | 481 | 68 | 5 | 1 | 479 | 1 | 471 | 0.0 | 832 |
| MS.gene43512.t1 | MTR_3g103550 | 70.302 | 431 | 122 | 4 | 3 | 432 | 1 | 426 | 0.0 | 653 |
| MS.gene43512.t1 | MTR_6g091760 | 61.806 | 432 | 156 | 5 | 4 | 435 | 14 | 436 | 0.0 | 561 |
| MS.gene43512.t1 | MTR_8g101750 | 60.046 | 433 | 156 | 6 | 4 | 435 | 12 | 428 | 0.0 | 540 |
| MS.gene43512.t1 | MTR_8g098930 | 54.464 | 448 | 197 | 5 | 2 | 449 | 10 | 450 | 0.0 | 536 |
| MS.gene43512.t1 | MTR_8g028600 | 53.811 | 433 | 191 | 3 | 2 | 434 | 9 | 432 | 1.14e-178 | 509 |
| MS.gene43512.t1 | MTR_7g079080 | 53.009 | 432 | 195 | 3 | 2 | 433 | 9 | 432 | 7.83e-176 | 503 |
| MS.gene43512.t1 | MTR_8g101820 | 55.530 | 434 | 161 | 8 | 4 | 435 | 12 | 415 | 3.95e-171 | 488 |
| MS.gene43512.t1 | MTR_6g463260 | 44.084 | 431 | 231 | 4 | 4 | 433 | 104 | 525 | 5.18e-141 | 416 |
| MS.gene43512.t1 | MTR_7g079080 | 53.134 | 335 | 149 | 3 | 99 | 433 | 1 | 327 | 1.12e-132 | 389 |
| MS.gene43512.t1 | MTR_5g011400 | 41.304 | 414 | 234 | 4 | 16 | 429 | 84 | 488 | 3.90e-122 | 366 |
| MS.gene43512.t1 | MTR_2g090730 | 89.247 | 93 | 6 | 1 | 57 | 149 | 12 | 100 | 1.30e-52 | 176 |
| MS.gene43512.t1 | MTR_5g033230 | 25.175 | 286 | 187 | 13 | 79 | 348 | 100 | 374 | 9.38e-15 | 76.6 |
| MS.gene43512.t1 | MTR_5g033230 | 25.175 | 286 | 187 | 13 | 79 | 348 | 100 | 374 | 1.21e-14 | 76.6 |
| MS.gene43512.t1 | MTR_4g011820 | 22.792 | 351 | 227 | 12 | 87 | 430 | 69 | 382 | 1.83e-13 | 72.4 |
| MS.gene43512.t1 | MTR_8g023140 | 23.599 | 339 | 235 | 11 | 112 | 432 | 182 | 514 | 5.97e-13 | 71.2 |
| MS.gene43512.t1 | MTR_7g106830 | 19.706 | 340 | 240 | 8 | 105 | 435 | 151 | 466 | 8.63e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43512.t1 | AT4G37770 | 71.726 | 481 | 123 | 6 | 1 | 480 | 1 | 469 | 0.0 | 721 |
| MS.gene43512.t1 | AT3G49700 | 73.125 | 480 | 119 | 6 | 1 | 480 | 1 | 470 | 0.0 | 717 |
| MS.gene43512.t1 | AT5G65800 | 72.292 | 480 | 123 | 5 | 1 | 480 | 1 | 470 | 0.0 | 711 |
| MS.gene43512.t1 | AT2G22810 | 71.250 | 480 | 132 | 5 | 1 | 480 | 1 | 474 | 0.0 | 702 |
| MS.gene43512.t1 | AT4G08040 | 64.392 | 469 | 151 | 5 | 3 | 471 | 1 | 453 | 0.0 | 629 |
| MS.gene43512.t1 | AT4G26200 | 59.861 | 431 | 165 | 4 | 4 | 433 | 18 | 441 | 0.0 | 530 |
| MS.gene43512.t1 | AT1G01480 | 54.005 | 437 | 194 | 5 | 3 | 438 | 11 | 441 | 4.52e-180 | 514 |
| MS.gene43512.t1 | AT3G61510 | 53.580 | 433 | 190 | 5 | 2 | 434 | 9 | 430 | 1.80e-179 | 512 |
| MS.gene43512.t1 | AT4G11280 | 53.687 | 434 | 193 | 4 | 1 | 434 | 12 | 437 | 1.73e-174 | 499 |
| MS.gene43512.t1 | AT1G01480 | 55.425 | 341 | 145 | 5 | 99 | 438 | 1 | 335 | 1.21e-141 | 412 |
| MS.gene43512.t1 | AT5G51690 | 42.757 | 428 | 235 | 5 | 4 | 430 | 69 | 487 | 3.88e-133 | 394 |
| MS.gene43512.t1 | AT1G62960 | 42.791 | 430 | 229 | 9 | 4 | 430 | 132 | 547 | 6.51e-125 | 375 |
| MS.gene43512.t1 | AT5G51690 | 42.520 | 381 | 202 | 5 | 50 | 430 | 1 | 364 | 7.53e-116 | 345 |
| MS.gene43512.t1 | AT1G70580 | 24.825 | 286 | 188 | 12 | 79 | 348 | 100 | 374 | 1.39e-17 | 85.5 |
| MS.gene43512.t1 | AT1G70580 | 24.825 | 286 | 188 | 12 | 79 | 348 | 100 | 374 | 1.39e-17 | 85.5 |
| MS.gene43512.t1 | AT1G70580 | 24.825 | 286 | 188 | 12 | 79 | 348 | 100 | 374 | 1.39e-17 | 85.5 |
| MS.gene43512.t1 | AT1G70580 | 24.825 | 286 | 188 | 12 | 79 | 348 | 100 | 374 | 1.39e-17 | 85.5 |
| MS.gene43512.t1 | AT1G23310 | 23.860 | 285 | 192 | 10 | 79 | 348 | 100 | 374 | 1.17e-16 | 82.4 |
| MS.gene43512.t1 | AT1G23310 | 23.860 | 285 | 192 | 10 | 79 | 348 | 100 | 374 | 1.44e-16 | 82.4 |
| MS.gene43512.t1 | AT1G72330 | 26.012 | 346 | 222 | 15 | 110 | 432 | 196 | 530 | 2.38e-14 | 75.9 |
| MS.gene43512.t1 | AT1G72330 | 30.303 | 132 | 89 | 3 | 110 | 240 | 196 | 325 | 2.06e-13 | 72.4 |
| MS.gene43512.t1 | AT1G17290 | 22.043 | 372 | 268 | 11 | 77 | 432 | 168 | 533 | 2.61e-13 | 72.4 |
| MS.gene43512.t1 | AT2G22250 | 24.194 | 248 | 163 | 6 | 105 | 348 | 153 | 379 | 6.67e-13 | 71.2 |
| MS.gene43512.t1 | AT2G22250 | 24.194 | 248 | 163 | 6 | 105 | 348 | 153 | 379 | 6.67e-13 | 71.2 |
| MS.gene43512.t1 | AT2G22250 | 24.194 | 248 | 163 | 6 | 105 | 348 | 106 | 332 | 7.64e-13 | 70.9 |
| MS.gene43512.t1 | AT1G80360 | 23.380 | 355 | 219 | 14 | 87 | 430 | 69 | 381 | 2.80e-12 | 68.9 |
| MS.gene43512.t1 | AT1G80360 | 23.380 | 355 | 219 | 14 | 87 | 430 | 69 | 381 | 2.80e-12 | 68.9 |
| MS.gene43512.t1 | AT1G80360 | 23.380 | 355 | 219 | 14 | 87 | 430 | 69 | 381 | 2.80e-12 | 68.9 |
| MS.gene43512.t1 | AT1G80360 | 23.380 | 355 | 219 | 14 | 87 | 430 | 69 | 381 | 2.80e-12 | 68.9 |
| MS.gene43512.t1 | AT1G72330 | 24.791 | 359 | 223 | 15 | 110 | 432 | 196 | 543 | 4.04e-12 | 68.9 |
| MS.gene43512.t1 | AT4G28420 | 22.563 | 359 | 233 | 13 | 87 | 432 | 103 | 429 | 1.29e-11 | 67.0 |
| MS.gene43512.t1 | AT2G24850 | 23.242 | 327 | 219 | 13 | 114 | 432 | 117 | 419 | 2.66e-11 | 65.9 |
| MS.gene43512.t1 | AT4G23600 | 23.099 | 355 | 236 | 12 | 87 | 432 | 78 | 404 | 3.23e-11 | 65.5 |
| MS.gene43512.t1 | AT2G20610 | 22.905 | 358 | 233 | 13 | 87 | 432 | 109 | 435 | 4.40e-11 | 65.5 |
Find 94 sgRNAs with CRISPR-Local
Find 125 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTAAGACACCTTTAACTTTA+AGG | 0.066158 | 5.3:+8071661 | None:intergenic |
| ACTGCACCCTTCACCATTAA+TGG | 0.203371 | 5.3:+8070921 | None:intergenic |
| AACAAGAACCTTAAAGTTAA+AGG | 0.249611 | 5.3:-8071669 | MS.gene43512:CDS |
| CTTAGCTATGAAAAGGTTAA+AGG | 0.260676 | 5.3:-8070959 | MS.gene43512:CDS |
| TTTGTTGCAAACTCCATTAA+TGG | 0.303571 | 5.3:-8070934 | MS.gene43512:CDS |
| ACTACGTACCCTGGGTAATA+AGG | 0.322371 | 5.3:+8071950 | None:intergenic |
| TAAGATCATTTCTTTCCTTA+AGG | 0.335369 | 5.3:+8071478 | None:intergenic |
| ACCAGGCAAACCCAAGTCTT+TGG | 0.336185 | 5.3:+8071404 | None:intergenic |
| GAAAGCATTGGTAGATTTCA+TGG | 0.343370 | 5.3:-8072101 | MS.gene43512:CDS |
| CGAAGAAATCTATTTCCAAT+TGG | 0.345373 | 5.3:-8070855 | MS.gene43512:CDS |
| GATTTGATAGAGACTTAAAA+TGG | 0.345945 | 5.3:-8071788 | MS.gene43512:CDS |
| CGTTTGAATCCAGCTACATC+TGG | 0.348486 | 5.3:+8072190 | None:intergenic |
| AAATACATTTGAAGCTGAAA+TGG | 0.350097 | 5.3:-8071103 | MS.gene43512:CDS |
| AATGGGCCTTGCAGAGAATC+AGG | 0.355872 | 5.3:-8072608 | MS.gene43512:intron |
| TCCAAAGACTTGGGTTTGCC+TGG | 0.356572 | 5.3:-8071405 | MS.gene43512:CDS |
| AGAGACTTAAAATGGAGAAC+TGG | 0.364057 | 5.3:-8071780 | MS.gene43512:CDS |
| CAAGATTCTTCATATTTCCT+AGG | 0.370017 | 5.3:-8072691 | MS.gene43512:CDS |
| TCATGTCATTGCACCGAACC+TGG | 0.380869 | 5.3:-8071027 | MS.gene43512:CDS |
| CCCATTTGAATAATTCCCTT+GGG | 0.387982 | 5.3:+8072625 | None:intergenic |
| TAAGGAAAGAAATGATCTTA+AGG | 0.388499 | 5.3:-8071475 | MS.gene43512:CDS |
| GCAAAGCCGATTCTGTGATT+TGG | 0.393738 | 5.3:+8071715 | None:intergenic |
| GAAGAAATCTATTTCCAATT+GGG | 0.406948 | 5.3:-8070854 | MS.gene43512:CDS |
| GCAACGAAAATGTCGAGCTT+TGG | 0.407129 | 5.3:-8071333 | MS.gene43512:CDS |
| CAAATGTATTTGAATTAAGA+AGG | 0.409557 | 5.3:+8071115 | None:intergenic |
| AGAAGATATTATTCGATGTT+CGG | 0.411380 | 5.3:-8071071 | MS.gene43512:CDS |
| TTTGAGCTTGTGCATTGTAT+TGG | 0.416870 | 5.3:+8071744 | None:intergenic |
| CTAGGAAATATGAAGAATCT+TGG | 0.418153 | 5.3:+8072692 | None:intergenic |
| TTGAAGCTGAAATGGAACTA+TGG | 0.421415 | 5.3:-8071095 | MS.gene43512:CDS |
| CAGTGTCATGGAAATCCTTA+AGG | 0.422050 | 5.3:-8071493 | MS.gene43512:CDS |
| GCAGTTAGAACAATGTGGTT+TGG | 0.429919 | 5.3:+8072046 | None:intergenic |
| CCCCAAGGGAATTATTCAAA+TGG | 0.429955 | 5.3:-8072626 | MS.gene43512:CDS |
| CGTAAAACTTCTAGAAGCTT+GGG | 0.433016 | 5.3:+8070876 | None:intergenic |
| TCGTAAAACTTCTAGAAGCT+TGG | 0.437659 | 5.3:+8070875 | None:intergenic |
| ACCAATGCTTTCTTGAAAGA+AGG | 0.439628 | 5.3:+8072112 | None:intergenic |
| GTAGTGCCTAGTGGGTTTGA+TGG | 0.441338 | 5.3:+8071630 | None:intergenic |
| GCCCATTTGAATAATTCCCT+TGG | 0.452199 | 5.3:+8072624 | None:intergenic |
| GAAAATGTCGAGCTTTGGTT+TGG | 0.457777 | 5.3:-8071328 | MS.gene43512:CDS |
| AAGGTAGACCATGGTAGTCT+TGG | 0.461144 | 5.3:+8072131 | None:intergenic |
| CATTAAACTTAGCTATGAAA+AGG | 0.483162 | 5.3:-8070966 | MS.gene43512:CDS |
| GCTAAGAACCCAGATGTAGC+TGG | 0.483190 | 5.3:-8072199 | MS.gene43512:CDS |
| TCTCATATTCTTGCCACCCT+AGG | 0.485179 | 5.3:+8072674 | None:intergenic |
| GGTTTGCCTGGTTTCCGTGT+AGG | 0.488762 | 5.3:-8071393 | MS.gene43512:CDS |
| TGTCTCAAAACAAATAATGC+TGG | 0.496154 | 5.3:-8071165 | MS.gene43512:CDS |
| TAACTTCCAAATCACAGAAT+CGG | 0.496716 | 5.3:-8071721 | MS.gene43512:CDS |
| AACACGAAACCACCCAGGTT+CGG | 0.497469 | 5.3:+8071014 | None:intergenic |
| TTGACATTGTAGTGCCTAGT+GGG | 0.500135 | 5.3:+8071622 | None:intergenic |
| CCCAAGGGAATTATTCAAAT+GGG | 0.502528 | 5.3:-8072625 | MS.gene43512:CDS |
| AACCACATTGTTCTAACTGC+TGG | 0.506743 | 5.3:-8072043 | MS.gene43512:CDS |
| GAGTGTCTCATTTGCAGAAG+TGG | 0.513434 | 5.3:+8072018 | None:intergenic |
| TTATAGTCTCTCCAAAGACT+TGG | 0.518098 | 5.3:-8071415 | MS.gene43512:CDS |
| AAGATTCTTCATATTTCCTA+GGG | 0.523269 | 5.3:-8072690 | MS.gene43512:CDS |
| ACCTTCTTTCAAGAAAGCAT+TGG | 0.525726 | 5.3:-8072113 | MS.gene43512:CDS |
| TTCCCACTCCTTATTACCCA+GGG | 0.526414 | 5.3:-8071958 | MS.gene43512:intron |
| CTTCCCACTCCTTATTACCC+AGG | 0.527471 | 5.3:-8071959 | MS.gene43512:CDS |
| TATAGTCTCTCCAAAGACTT+GGG | 0.536362 | 5.3:-8071414 | MS.gene43512:CDS |
| ATTCTTCATATTTCCTAGGG+TGG | 0.549169 | 5.3:-8072687 | MS.gene43512:CDS |
| ATAAGCGACGAAATTTACTC+AGG | 0.549874 | 5.3:-8071543 | MS.gene43512:CDS |
| GAGACTTAAAATGGAGAACT+GGG | 0.550316 | 5.3:-8071779 | MS.gene43512:CDS |
| TCCGAGTTTCATCAGTGTCA+TGG | 0.550388 | 5.3:-8071505 | MS.gene43512:CDS |
| GATTTCATGGCTGAGATTCG+AGG | 0.551442 | 5.3:-8072088 | MS.gene43512:CDS |
| CATGTCATTGCACCGAACCT+GGG | 0.557249 | 5.3:-8071026 | MS.gene43512:CDS |
| CTTTGATGAAGTCAACGAGA+AGG | 0.561638 | 5.3:+8071586 | None:intergenic |
| GTTTGAATCCAGCTACATCT+GGG | 0.563494 | 5.3:+8072191 | None:intergenic |
| TATCTCCTCTCATCTATGCT+AGG | 0.566553 | 5.3:-8071288 | MS.gene43512:CDS |
| TCCATGACACTGATGAAACT+CGG | 0.567201 | 5.3:+8071504 | None:intergenic |
| TTTGACATTGTAGTGCCTAG+TGG | 0.577255 | 5.3:+8071621 | None:intergenic |
| CAGAATAGATAGCGCCTACA+CGG | 0.579609 | 5.3:+8071379 | None:intergenic |
| AGTTAACCTGATTCTCTGCA+AGG | 0.590703 | 5.3:+8072602 | None:intergenic |
| GCAAACTCCATTAATGGTGA+AGG | 0.593150 | 5.3:-8070928 | MS.gene43512:CDS |
| GTTCGGTTGAACATTTCACC+TGG | 0.597060 | 5.3:-8071054 | MS.gene43512:CDS |
| AAGCTTCTCCTTGTTCAGCA+AGG | 0.599299 | 5.3:+8071987 | None:intergenic |
| GTAGCTGGATTCAAACGTGA+TGG | 0.600691 | 5.3:-8072184 | MS.gene43512:CDS |
| AAAGCCACATGCAACTCTCA+TGG | 0.602554 | 5.3:-8072715 | MS.gene43512:CDS |
| TAAGCGACGAAATTTACTCA+GGG | 0.604103 | 5.3:-8071542 | MS.gene43512:CDS |
| TACCCTGGGTAATAAGGAGT+GGG | 0.613428 | 5.3:+8071956 | None:intergenic |
| CCATTTGAATAATTCCCTTG+GGG | 0.613853 | 5.3:+8072626 | None:intergenic |
| ATAGCGCCTACACGGAAACC+AGG | 0.614656 | 5.3:+8071387 | None:intergenic |
| TGTCACCTAGCATAGATGAG+AGG | 0.616320 | 5.3:+8071283 | None:intergenic |
| TGATGAAGTTCAAAACCCCA+AGG | 0.617608 | 5.3:-8072641 | MS.gene43512:CDS |
| GTGCAATGACATGAAGCACC+AGG | 0.624795 | 5.3:+8071036 | None:intergenic |
| CAAACTCCATTAATGGTGAA+GGG | 0.626301 | 5.3:-8070927 | MS.gene43512:CDS |
| GTACCCTGGGTAATAAGGAG+TGG | 0.633094 | 5.3:+8071955 | None:intergenic |
| GCTCTCTTCCAAGACTACCA+TGG | 0.637227 | 5.3:-8072139 | MS.gene43512:CDS |
| CTGGGTAATAAGGAGTGGGA+AGG | 0.641068 | 5.3:+8071960 | None:intergenic |
| GTCATTGCACCGAACCTGGG+TGG | 0.644838 | 5.3:-8071023 | MS.gene43512:CDS |
| ACAAATCCATCAAACCCACT+AGG | 0.656298 | 5.3:-8071636 | MS.gene43512:CDS |
| GATGAAGTTCAAAACCCCAA+GGG | 0.661842 | 5.3:-8072640 | MS.gene43512:CDS |
| TCTTGAAAGAAGGTAGACCA+TGG | 0.675537 | 5.3:+8072122 | None:intergenic |
| CACCAGCAGTTAGAACAATG+TGG | 0.701525 | 5.3:+8072041 | None:intergenic |
| TATCTATTCTGAAAACGACA+TGG | 0.701566 | 5.3:-8071367 | MS.gene43512:CDS |
| AAACAAACACGAAACCACCC+AGG | 0.702988 | 5.3:+8071009 | None:intergenic |
| AGACTTAAAATGGAGAACTG+GGG | 0.733329 | 5.3:-8071778 | MS.gene43512:CDS |
| TTGGCCATGAGAGTTGCATG+TGG | 0.737064 | 5.3:+8072711 | None:intergenic |
| GACACTGATGAAACTCGGAG+AGG | 0.753561 | 5.3:+8071509 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATAATGTCTAAATAATTA+AGG | - | chr5.3:8071253-8071272 | MS.gene43512:CDS | 10.0% |
| !!! | TCTTAATTAAGATTTTTTTT+TGG | + | chr5.3:8071165-8071184 | None:intergenic | 10.0% |
| !! | AAATCTGCATATAAAAATAT+TGG | + | chr5.3:8071737-8071756 | None:intergenic | 15.0% |
| !! | ATTATTTAGACATTATATGA+TGG | + | chr5.3:8071251-8071270 | None:intergenic | 15.0% |
| !! | AAGCACACTAAATAAAAATA+TGG | + | chr5.3:8070996-8071015 | None:intergenic | 20.0% |
| !! | ACACTAAATAAAAATATGGT+TGG | + | chr5.3:8070992-8071011 | None:intergenic | 20.0% |
| !! | CAAATGTATTTGAATTAAGA+AGG | + | chr5.3:8072428-8072447 | None:intergenic | 20.0% |
| !! | TAAATAAAAATATGGTTGGT+GGG | + | chr5.3:8070988-8071007 | None:intergenic | 20.0% |
| ! | AACAAGAACCTTAAAGTTAA+AGG | - | chr5.3:8071871-8071890 | MS.gene43512:intron | 25.0% |
| ! | AAGATTCTTCATATTTCCTA+GGG | - | chr5.3:8070850-8070869 | MS.gene43512:CDS | 25.0% |
| ! | AGAAGATATTATTCGATGTT+CGG | - | chr5.3:8072469-8072488 | MS.gene43512:intron | 25.0% |
| ! | CATTAAACTTAGCTATGAAA+AGG | - | chr5.3:8072574-8072593 | MS.gene43512:intron | 25.0% |
| ! | CTAAATAAAAATATGGTTGG+TGG | + | chr5.3:8070989-8071008 | None:intergenic | 25.0% |
| ! | GAAGAAATCTATTTCCAATT+GGG | - | chr5.3:8072686-8072705 | MS.gene43512:CDS | 25.0% |
| ! | GATTTGATAGAGACTTAAAA+TGG | - | chr5.3:8071752-8071771 | MS.gene43512:CDS | 25.0% |
| ! | GTCTAAATAATTAAGGTTGT+GGG | - | chr5.3:8071260-8071279 | MS.gene43512:CDS | 25.0% |
| ! | TAAGATCATTTCTTTCCTTA+AGG | + | chr5.3:8072065-8072084 | None:intergenic | 25.0% |
| ! | TAAGGAAAGAAATGATCTTA+AGG | - | chr5.3:8072065-8072084 | MS.gene43512:CDS | 25.0% |
| ! | TGTCTAAATAATTAAGGTTG+TGG | - | chr5.3:8071259-8071278 | MS.gene43512:CDS | 25.0% |
| !! | AAATACATTTGAAGCTGAAA+TGG | - | chr5.3:8072437-8072456 | MS.gene43512:intron | 25.0% |
| !! | AGACAAAAAATGCTTGTTAA+TGG | - | chr5.3:8072330-8072349 | MS.gene43512:intron | 25.0% |
| !! | AGCTCATCACATAATTTTTA+GGG | - | chr5.3:8071138-8071157 | MS.gene43512:CDS | 25.0% |
| !! | TAGCTCATCACATAATTTTT+AGG | - | chr5.3:8071137-8071156 | MS.gene43512:CDS | 25.0% |
| !!! | ACATTTTTGAGAATCAAAAG+AGG | - | chr5.3:8072298-8072317 | MS.gene43512:intron | 25.0% |
| !!! | TTATGAAGTTTTGATGTGAT+CGG | + | chr5.3:8071055-8071074 | None:intergenic | 25.0% |
| AAATAAATTACTACGTACCC+TGG | + | chr5.3:8071602-8071621 | None:intergenic | 30.0% | |
| AATAAATTACTACGTACCCT+GGG | + | chr5.3:8071601-8071620 | None:intergenic | 30.0% | |
| CAAGATTCTTCATATTTCCT+AGG | - | chr5.3:8070849-8070868 | MS.gene43512:CDS | 30.0% | |
| CGAAGAAATCTATTTCCAAT+TGG | - | chr5.3:8072685-8072704 | MS.gene43512:CDS | 30.0% | |
| CTAGGAAATATGAAGAATCT+TGG | + | chr5.3:8070851-8070870 | None:intergenic | 30.0% | |
| CTTAGCTATGAAAAGGTTAA+AGG | - | chr5.3:8072581-8072600 | MS.gene43512:intron | 30.0% | |
| TAACTTCCAAATCACAGAAT+CGG | - | chr5.3:8071819-8071838 | MS.gene43512:intron | 30.0% | |
| TGTCTCAAAACAAATAATGC+TGG | - | chr5.3:8072375-8072394 | MS.gene43512:intron | 30.0% | |
| TTAGACATTATATGATGGCT+TGG | + | chr5.3:8071246-8071265 | None:intergenic | 30.0% | |
| TTTGTTGCAAACTCCATTAA+TGG | - | chr5.3:8072606-8072625 | MS.gene43512:intron | 30.0% | |
| ! | CTAAGACACCTTTAACTTTA+AGG | + | chr5.3:8071882-8071901 | None:intergenic | 30.0% |
| ! | CTATTTCCAATTGGGTTTTT+CGG | - | chr5.3:8072694-8072713 | MS.gene43512:CDS | 30.0% |
| ! | TATCTATTCTGAAAACGACA+TGG | - | chr5.3:8072173-8072192 | MS.gene43512:CDS | 30.0% |
| !! | GTTAATGGATTACAAAAAGC+AGG | - | chr5.3:8072345-8072364 | MS.gene43512:intron | 30.0% |
| !!! | GGTTTTGAACTTCATCATAA+GGG | + | chr5.3:8070896-8070915 | None:intergenic | 30.0% |
| ACCAATGCTTTCTTGAAAGA+AGG | + | chr5.3:8071431-8071450 | None:intergenic | 35.0% | |
| AGACTTAAAATGGAGAACTG+GGG | - | chr5.3:8071762-8071781 | MS.gene43512:CDS | 35.0% | |
| AGAGACTTAAAATGGAGAAC+TGG | - | chr5.3:8071760-8071779 | MS.gene43512:CDS | 35.0% | |
| ATAAGCGACGAAATTTACTC+AGG | - | chr5.3:8071997-8072016 | MS.gene43512:CDS | 35.0% | |
| ATTCTTCATATTTCCTAGGG+TGG | - | chr5.3:8070853-8070872 | MS.gene43512:CDS | 35.0% | |
| CAAACTCCATTAATGGTGAA+GGG | - | chr5.3:8072613-8072632 | MS.gene43512:CDS | 35.0% | |
| CCATTTGAATAATTCCCTTG+GGG | + | chr5.3:8070917-8070936 | None:intergenic | 35.0% | |
| CCCAAGGGAATTATTCAAAT+GGG | - | chr5.3:8070915-8070934 | MS.gene43512:CDS | 35.0% | |
| CCCATTTGAATAATTCCCTT+GGG | + | chr5.3:8070918-8070937 | None:intergenic | 35.0% | |
| CTACAACACAAGAACTTCTT+AGG | + | chr5.3:8071120-8071139 | None:intergenic | 35.0% | |
| GAGACTTAAAATGGAGAACT+GGG | - | chr5.3:8071761-8071780 | MS.gene43512:CDS | 35.0% | |
| TAAGCGACGAAATTTACTCA+GGG | - | chr5.3:8071998-8072017 | MS.gene43512:CDS | 35.0% | |
| TATAGTCTCTCCAAAGACTT+GGG | - | chr5.3:8072126-8072145 | MS.gene43512:CDS | 35.0% | |
| TTATAGTCTCTCCAAAGACT+TGG | - | chr5.3:8072125-8072144 | MS.gene43512:CDS | 35.0% | |
| TTGAAGCTGAAATGGAACTA+TGG | - | chr5.3:8072445-8072464 | MS.gene43512:intron | 35.0% | |
| TTTGAGCTTGTGCATTGTAT+TGG | + | chr5.3:8071799-8071818 | None:intergenic | 35.0% | |
| ! | ACCTTCTTTCAAGAAAGCAT+TGG | - | chr5.3:8071427-8071446 | MS.gene43512:CDS | 35.0% |
| ! | CGTAAAACTTCTAGAAGCTT+GGG | + | chr5.3:8072667-8072686 | None:intergenic | 35.0% |
| ! | CTTTTGATCTATTGGAGTCA+TGG | - | chr5.3:8071315-8071334 | MS.gene43512:CDS | 35.0% |
| ! | TCGTAAAACTTCTAGAAGCT+TGG | + | chr5.3:8072668-8072687 | None:intergenic | 35.0% |
| !! | GAAAGCATTGGTAGATTTCA+TGG | - | chr5.3:8071439-8071458 | MS.gene43512:CDS | 35.0% |
| !! | GAACAAGTCTAGTACTGATA+TGG | - | chr5.3:8071087-8071106 | MS.gene43512:CDS | 35.0% |
| !!! | ATAATGCTGGTTTGTTTTGC+TGG | - | chr5.3:8072388-8072407 | MS.gene43512:intron | 35.0% |
| !!! | GGGTTTTGAACTTCATCATA+AGG | + | chr5.3:8070897-8070916 | None:intergenic | 35.0% |
| !!! | TAATGCTGGTTTGTTTTGCT+GGG | - | chr5.3:8072389-8072408 | MS.gene43512:intron | 35.0% |
| AACCACATTGTTCTAACTGC+TGG | - | chr5.3:8071497-8071516 | MS.gene43512:CDS | 40.0% | |
| ACAAATCCATCAAACCCACT+AGG | - | chr5.3:8071904-8071923 | MS.gene43512:intron | 40.0% | |
| AGATAGCCGAAAAACCCAAT+TGG | + | chr5.3:8072703-8072722 | None:intergenic | 40.0% | |
| AGTTAACCTGATTCTCTGCA+AGG | + | chr5.3:8070941-8070960 | None:intergenic | 40.0% | |
| CAGTGTCATGGAAATCCTTA+AGG | - | chr5.3:8072047-8072066 | MS.gene43512:CDS | 40.0% | |
| CCCCAAGGGAATTATTCAAA+TGG | - | chr5.3:8070914-8070933 | MS.gene43512:CDS | 40.0% | |
| CTTTGATGAAGTCAACGAGA+AGG | + | chr5.3:8071957-8071976 | None:intergenic | 40.0% | |
| GATGAAGTTCAAAACCCCAA+GGG | - | chr5.3:8070900-8070919 | MS.gene43512:CDS | 40.0% | |
| GCAAACTCCATTAATGGTGA+AGG | - | chr5.3:8072612-8072631 | MS.gene43512:CDS | 40.0% | |
| GCAGTTAGAACAATGTGGTT+TGG | + | chr5.3:8071497-8071516 | None:intergenic | 40.0% | |
| GCCCATTTGAATAATTCCCT+TGG | + | chr5.3:8070919-8070938 | None:intergenic | 40.0% | |
| GTTTGAATCCAGCTACATCT+GGG | + | chr5.3:8071352-8071371 | None:intergenic | 40.0% | |
| TATCTCCTCTCATCTATGCT+AGG | - | chr5.3:8072252-8072271 | MS.gene43512:intron | 40.0% | |
| TCCATGACACTGATGAAACT+CGG | + | chr5.3:8072039-8072058 | None:intergenic | 40.0% | |
| TCTTGAAAGAAGGTAGACCA+TGG | + | chr5.3:8071421-8071440 | None:intergenic | 40.0% | |
| TGATGAAGTTCAAAACCCCA+AGG | - | chr5.3:8070899-8070918 | MS.gene43512:CDS | 40.0% | |
| TTGACATTGTAGTGCCTAGT+GGG | + | chr5.3:8071921-8071940 | None:intergenic | 40.0% | |
| TTTGACATTGTAGTGCCTAG+TGG | + | chr5.3:8071922-8071941 | None:intergenic | 40.0% | |
| ! | ATGTTTTGCCTTGCTGAACA+AGG | - | chr5.3:8071545-8071564 | MS.gene43512:CDS | 40.0% |
| ! | GAAAATGTCGAGCTTTGGTT+TGG | - | chr5.3:8072212-8072231 | MS.gene43512:CDS | 40.0% |
| ! | GCAGCTGTCTTTTGATCTAT+TGG | - | chr5.3:8071307-8071326 | MS.gene43512:CDS | 40.0% |
| AAACAAACACGAAACCACCC+AGG | + | chr5.3:8072534-8072553 | None:intergenic | 45.0% | |
| AAAGCCACATGCAACTCTCA+TGG | - | chr5.3:8070825-8070844 | MS.gene43512:CDS | 45.0% | |
| AAGCTTCTCCTTGTTCAGCA+AGG | + | chr5.3:8071556-8071575 | None:intergenic | 45.0% | |
| AAGGTAGACCATGGTAGTCT+TGG | + | chr5.3:8071412-8071431 | None:intergenic | 45.0% | |
| ACTACGTACCCTGGGTAATA+AGG | + | chr5.3:8071593-8071612 | None:intergenic | 45.0% | |
| ACTGCACCCTTCACCATTAA+TGG | + | chr5.3:8072622-8072641 | None:intergenic | 45.0% | |
| CACCAGCAGTTAGAACAATG+TGG | + | chr5.3:8071502-8071521 | None:intergenic | 45.0% | |
| CAGAATAGATAGCGCCTACA+CGG | + | chr5.3:8072164-8072183 | None:intergenic | 45.0% | |
| CGTTTGAATCCAGCTACATC+TGG | + | chr5.3:8071353-8071372 | None:intergenic | 45.0% | |
| GAGTGTCTCATTTGCAGAAG+TGG | + | chr5.3:8071525-8071544 | None:intergenic | 45.0% | |
| GATTTCATGGCTGAGATTCG+AGG | - | chr5.3:8071452-8071471 | MS.gene43512:CDS | 45.0% | |
| GCAACGAAAATGTCGAGCTT+TGG | - | chr5.3:8072207-8072226 | MS.gene43512:CDS | 45.0% | |
| GTAGCTGGATTCAAACGTGA+TGG | - | chr5.3:8071356-8071375 | MS.gene43512:CDS | 45.0% | |
| GTTCGGTTGAACATTTCACC+TGG | - | chr5.3:8072486-8072505 | MS.gene43512:intron | 45.0% | |
| TACCCTGGGTAATAAGGAGT+GGG | + | chr5.3:8071587-8071606 | None:intergenic | 45.0% | |
| TCCGAGTTTCATCAGTGTCA+TGG | - | chr5.3:8072035-8072054 | MS.gene43512:CDS | 45.0% | |
| TCTCATATTCTTGCCACCCT+AGG | + | chr5.3:8070869-8070888 | None:intergenic | 45.0% | |
| TGTCACCTAGCATAGATGAG+AGG | + | chr5.3:8072260-8072279 | None:intergenic | 45.0% | |
| TTCCCACTCCTTATTACCCA+GGG | - | chr5.3:8071582-8071601 | MS.gene43512:CDS | 45.0% | |
| ! | GCAAAGCCGATTCTGTGATT+TGG | + | chr5.3:8071828-8071847 | None:intergenic | 45.0% |
| !! | GGATTTTGACGCTGACATCT+CGG | - | chr5.3:8072086-8072105 | MS.gene43512:CDS | 45.0% |
| AACACGAAACCACCCAGGTT+CGG | + | chr5.3:8072529-8072548 | None:intergenic | 50.0% | |
| AATGGGCCTTGCAGAGAATC+AGG | - | chr5.3:8070932-8070951 | MS.gene43512:CDS | 50.0% | |
| ACCAGGCAAACCCAAGTCTT+TGG | + | chr5.3:8072139-8072158 | None:intergenic | 50.0% | |
| CATGTCATTGCACCGAACCT+GGG | - | chr5.3:8072514-8072533 | MS.gene43512:intron | 50.0% | |
| CTGGGTAATAAGGAGTGGGA+AGG | + | chr5.3:8071583-8071602 | None:intergenic | 50.0% | |
| CTTCCCACTCCTTATTACCC+AGG | - | chr5.3:8071581-8071600 | MS.gene43512:CDS | 50.0% | |
| GACACTGATGAAACTCGGAG+AGG | + | chr5.3:8072034-8072053 | None:intergenic | 50.0% | |
| GCTAAGAACCCAGATGTAGC+TGG | - | chr5.3:8071341-8071360 | MS.gene43512:CDS | 50.0% | |
| GCTCTCTTCCAAGACTACCA+TGG | - | chr5.3:8071401-8071420 | MS.gene43512:CDS | 50.0% | |
| GTACCCTGGGTAATAAGGAG+TGG | + | chr5.3:8071588-8071607 | None:intergenic | 50.0% | |
| TCATGTCATTGCACCGAACC+TGG | - | chr5.3:8072513-8072532 | MS.gene43512:intron | 50.0% | |
| TCCAAAGACTTGGGTTTGCC+TGG | - | chr5.3:8072135-8072154 | MS.gene43512:CDS | 50.0% | |
| TTGGCCATGAGAGTTGCATG+TGG | + | chr5.3:8070832-8070851 | None:intergenic | 50.0% | |
| ! | GTGCAATGACATGAAGCACC+AGG | + | chr5.3:8072507-8072526 | None:intergenic | 50.0% |
| !! | GTAGTGCCTAGTGGGTTTGA+TGG | + | chr5.3:8071913-8071932 | None:intergenic | 50.0% |
| ATAGCGCCTACACGGAAACC+AGG | + | chr5.3:8072156-8072175 | None:intergenic | 55.0% | |
| GGTTTGCCTGGTTTCCGTGT+AGG | - | chr5.3:8072147-8072166 | MS.gene43512:CDS | 55.0% | |
| GTCATTGCACCGAACCTGGG+TGG | - | chr5.3:8072517-8072536 | MS.gene43512:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 8070807 | 8072755 | 8070807 | ID=MS.gene43512 |
| chr5.3 | mRNA | 8070807 | 8072755 | 8070807 | ID=MS.gene43512.t1;Parent=MS.gene43512 |
| chr5.3 | exon | 8072609 | 8072755 | 8072609 | ID=MS.gene43512.t1.exon1;Parent=MS.gene43512.t1 |
| chr5.3 | CDS | 8072609 | 8072755 | 8072609 | ID=cds.MS.gene43512.t1;Parent=MS.gene43512.t1 |
| chr5.3 | exon | 8071959 | 8072251 | 8071959 | ID=MS.gene43512.t1.exon2;Parent=MS.gene43512.t1 |
| chr5.3 | CDS | 8071959 | 8072251 | 8071959 | ID=cds.MS.gene43512.t1;Parent=MS.gene43512.t1 |
| chr5.3 | exon | 8070807 | 8071809 | 8070807 | ID=MS.gene43512.t1.exon3;Parent=MS.gene43512.t1 |
| chr5.3 | CDS | 8070807 | 8071809 | 8070807 | ID=cds.MS.gene43512.t1;Parent=MS.gene43512.t1 |
| Gene Sequence |
| Protein sequence |
