Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43711.t1 | XP_003615495.1 | 98.4 | 192 | 3 | 0 | 1 | 192 | 1 | 192 | 8.30E-101 | 376.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43711.t1 | P30707 | 86.5 | 192 | 26 | 0 | 1 | 192 | 1 | 192 | 2.1e-92 | 339.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43711.t1 | G7K669 | 98.4 | 192 | 3 | 0 | 1 | 192 | 1 | 192 | 6.0e-101 | 376.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049361 | MS.gene43711 | 0.829138 | 6.09E-55 | -1.69E-46 |
| MS.gene051984 | MS.gene43711 | 0.821046 | 4.97E-53 | -1.69E-46 |
| MS.gene056387 | MS.gene43711 | -0.8055 | 1.30E-49 | -1.69E-46 |
| MS.gene060483 | MS.gene43711 | 0.81013 | 1.34E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene43711 | MS.gene82237 | PPI |
| MS.gene43711 | MS.gene77045 | PPI |
| MS.gene06581 | MS.gene43711 | PPI |
| MS.gene43711 | MS.gene87743 | PPI |
| MS.gene43711 | MS.gene06803 | PPI |
| MS.gene43711 | MS.gene87064 | PPI |
| MS.gene43711 | MS.gene76728 | PPI |
| MS.gene43711 | MS.gene42075 | PPI |
| MS.gene43711 | MS.gene48819 | PPI |
| MS.gene43711 | MS.gene013477 | PPI |
| MS.gene43711 | MS.gene057272 | PPI |
| MS.gene43711 | MS.gene06581 | PPI |
| MS.gene43711 | MS.gene06583 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43711.t1 | MTR_5g068780 | 98.438 | 192 | 3 | 0 | 1 | 192 | 1 | 192 | 1.90e-139 | 387 |
| MS.gene43711.t1 | MTR_3g093110 | 87.500 | 192 | 24 | 0 | 1 | 192 | 1 | 192 | 8.37e-126 | 352 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43711.t1 | AT1G33140 | 84.456 | 193 | 29 | 1 | 1 | 192 | 1 | 193 | 4.23e-120 | 338 |
| MS.gene43711.t1 | AT1G33120 | 84.456 | 193 | 29 | 1 | 1 | 192 | 1 | 193 | 4.23e-120 | 338 |
| MS.gene43711.t1 | AT4G10450 | 82.383 | 193 | 33 | 1 | 1 | 192 | 1 | 193 | 5.83e-117 | 330 |
| MS.gene43711.t1 | AT4G10450 | 81.928 | 166 | 29 | 1 | 1 | 165 | 1 | 166 | 3.66e-99 | 284 |
Find 43 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTGAAGGATGAGTTGATTT+TGG | 0.219023 | 5.1:-53472186 | MS.gene43711:CDS |
| AACTGCAGACCTGGTTAATA+AGG | 0.222453 | 5.1:+53472126 | None:intergenic |
| GTTAATAAGGGCACAAGATC+TGG | 0.336166 | 5.1:+53472139 | None:intergenic |
| TGAAGGTCCACGAGGTAAAT+TGG | 0.356555 | 5.1:-53474768 | MS.gene43711:CDS |
| GTCGGGAATGTCCATTGTTT+CGG | 0.365385 | 5.1:+53474829 | None:intergenic |
| CTAAAGGTTGAAGCTTGGTT+TGG | 0.367033 | 5.1:-53474680 | MS.gene43711:CDS |
| TTAGTAATACTAGCATTAAT+AGG | 0.377704 | 5.1:+53474545 | None:intergenic |
| TTGAAGCTTGGTTTGGATCA+AGG | 0.391941 | 5.1:-53474673 | MS.gene43711:CDS |
| ACCTTCAACCTCGATGAGTT+TGG | 0.410571 | 5.1:+53474784 | None:intergenic |
| TCTCATCACTGGTGTTACTA+AGG | 0.424742 | 5.1:-53474606 | MS.gene43711:CDS |
| ATTGAGATTCGTAACTTCCT+TGG | 0.437199 | 5.1:-53474509 | MS.gene43711:CDS |
| GACTTTGATGCTTACTCCGT+CGG | 0.453982 | 5.1:+53474811 | None:intergenic |
| AGATACCATCAAGGAACTTC+CGG | 0.458260 | 5.1:+53471970 | None:intergenic |
| CAGCTAATTACAGACGAAGA+AGG | 0.461385 | 5.1:-53474713 | MS.gene43711:CDS |
| CACTATCCTTCGATCTGAAA+AGG | 0.468016 | 5.1:-53472207 | MS.gene43711:CDS |
| GATATCCGGAAGTTCCTTGA+TGG | 0.481710 | 5.1:-53471975 | MS.gene43711:CDS |
| AGAAGCTAAAGGTTGAAGCT+TGG | 0.507094 | 5.1:-53474685 | MS.gene43711:CDS |
| CATTGTTTCGGAAGAGAGGA+TGG | 0.507424 | 5.1:+53474841 | None:intergenic |
| ATGTTAAGAACAAAGATATC+CGG | 0.514793 | 5.1:-53471989 | MS.gene43711:CDS |
| CATGTTGATAATCTCATCAC+TGG | 0.524737 | 5.1:-53474617 | MS.gene43711:CDS |
| AGCTAATTACAGACGAAGAA+GGG | 0.525662 | 5.1:-53474712 | MS.gene43711:CDS |
| CTCATCACTGGTGTTACTAA+GGG | 0.526252 | 5.1:-53474605 | MS.gene43711:CDS |
| AGAAAAGTTGACATGCTTAA+CGG | 0.531676 | 5.1:-53472233 | MS.gene43711:CDS |
| ACTGCAGACCTGGTTAATAA+GGG | 0.534157 | 5.1:+53472127 | None:intergenic |
| CATCCTCTCTTCCGAAACAA+TGG | 0.543487 | 5.1:-53474840 | MS.gene43711:CDS |
| GCCAAACTCATCGAGGTTGA+AGG | 0.549542 | 5.1:-53474785 | MS.gene43711:CDS |
| ACTTTGATGCTTACTCCGTC+GGG | 0.550847 | 5.1:+53474812 | None:intergenic |
| ATCTTGTGCCCTTATTAACC+AGG | 0.554399 | 5.1:-53472135 | MS.gene43711:intron |
| TGTCCATTGTTTCGGAAGAG+AGG | 0.563232 | 5.1:+53474837 | None:intergenic |
| GGTATCTATGTTAGCGAGAG+GGG | 0.570010 | 5.1:-53471954 | MS.gene43711:CDS |
| CCTTCGATCTGAAAAGGTGA+AGG | 0.575546 | 5.1:-53472201 | MS.gene43711:CDS |
| CAACCTCGATGAGTTTGGCG+TGG | 0.580509 | 5.1:+53474789 | None:intergenic |
| AAACAAAACGCATCTTGTAA+CGG | 0.594741 | 5.1:+53474579 | None:intergenic |
| AGCAGTACGAATAGCAGCAG+AGG | 0.600567 | 5.1:+53474646 | None:intergenic |
| CGCTAACATAGATACCATCA+AGG | 0.600705 | 5.1:+53471961 | None:intergenic |
| AGAAGGGAAGAAGAAGCTAA+AGG | 0.615201 | 5.1:-53474696 | MS.gene43711:CDS |
| TGGTATCTATGTTAGCGAGA+GGG | 0.617657 | 5.1:-53471955 | MS.gene43711:CDS |
| ATGGTATCTATGTTAGCGAG+AGG | 0.648406 | 5.1:-53471956 | MS.gene43711:CDS |
| TCACGCACCAATTTACCTCG+TGG | 0.665893 | 5.1:+53474761 | None:intergenic |
| CTGTAATTAGCTGAAAATCG+AGG | 0.687812 | 5.1:+53474723 | None:intergenic |
| GAAACAATGGACATTCCCGA+CGG | 0.716770 | 5.1:-53474827 | MS.gene43711:CDS |
| AGTCCACGCCAAACTCATCG+AGG | 0.736394 | 5.1:-53474792 | MS.gene43711:CDS |
| ATCGAGGTTGAAGGTCCACG+AGG | 0.744735 | 5.1:-53474776 | MS.gene43711:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATAATTATTTTTTTTAATT+TGG | - | chr5.1:53473936-53473955 | MS.gene43711:intron | 0.0% |
| !! | ATCAAATTTAAATTTGTATT+TGG | - | chr5.1:53474509-53474528 | MS.gene43711:CDS | 10.0% |
| !!! | CAATTTTTTTTTAAAAAAAG+TGG | + | chr5.1:53474223-53474242 | None:intergenic | 10.0% |
| !!! | TTTTAATTTCGTTTTTTTTT+TGG | - | chr5.1:53472318-53472337 | MS.gene43711:intron | 10.0% |
| !! | ACAAAATCTAAAAATACATA+CGG | + | chr5.1:53473841-53473860 | None:intergenic | 15.0% |
| !! | ATTATAAGATTATTCTTGAT+TGG | - | chr5.1:53472560-53472579 | MS.gene43711:intron | 15.0% |
| !! | TTATAAGATTATTCTTGATT+GGG | - | chr5.1:53472561-53472580 | MS.gene43711:intron | 15.0% |
| !! | TTATTTGAATGAAATTAGTT+TGG | - | chr5.1:53472596-53472615 | MS.gene43711:intron | 15.0% |
| !!! | TGATTTTTTACTAAGAAAAA+GGG | - | chr5.1:53473487-53473506 | MS.gene43711:intron | 15.0% |
| !!! | TTGATTTTTTACTAAGAAAA+AGG | - | chr5.1:53473486-53473505 | MS.gene43711:intron | 15.0% |
| !! | AAAATTATTGTTGGAATGAA+TGG | - | chr5.1:53474414-53474433 | MS.gene43711:intron | 20.0% |
| !! | AAATCTATATTAAGCAGAAT+AGG | - | chr5.1:53474385-53474404 | MS.gene43711:intron | 20.0% |
| !! | AAGCAATATAACTACTAAAA+TGG | + | chr5.1:53472446-53472465 | None:intergenic | 20.0% |
| !! | AGCAATATAACTACTAAAAT+GGG | + | chr5.1:53472445-53472464 | None:intergenic | 20.0% |
| !! | AGGGAAAAAAATATAAGAAA+TGG | - | chr5.1:53474054-53474073 | MS.gene43711:intron | 20.0% |
| !! | ATTAAAATTAAAACCTGAGA+CGG | + | chr5.1:53474746-53474765 | None:intergenic | 20.0% |
| !! | TACAAGACTATTTATGTAAT+AGG | + | chr5.1:53473870-53473889 | None:intergenic | 20.0% |
| !! | TATACACCAAATAAAAAACA+TGG | + | chr5.1:53472916-53472935 | None:intergenic | 20.0% |
| !! | TGTTTCACAAAAATTATTAG+AGG | + | chr5.1:53473793-53473812 | None:intergenic | 20.0% |
| !! | TTAAAATCAAAACAAGAGAA+TGG | + | chr5.1:53474723-53474742 | None:intergenic | 20.0% |
| !! | TTAGTAATACTAGCATTAAT+AGG | + | chr5.1:53472241-53472260 | None:intergenic | 20.0% |
| !!! | ACAATATTTTGAATAAAAGG+TGG | + | chr5.1:53473618-53473637 | None:intergenic | 20.0% |
| !!! | ATTTTCCAAAATCTTAGTTT+GGG | - | chr5.1:53473400-53473419 | MS.gene43711:intron | 20.0% |
| !!! | CTTATTTTTTTTCAGCTTAT+AGG | + | chr5.1:53472786-53472805 | None:intergenic | 20.0% |
| !!! | TGCACAATATTTTGAATAAA+AGG | + | chr5.1:53473621-53473640 | None:intergenic | 20.0% |
| !!! | TTCTTATATTTTTTTCCCTT+GGG | + | chr5.1:53474053-53474072 | None:intergenic | 20.0% |
| !!! | TTTCTTATATTTTTTTCCCT+TGG | + | chr5.1:53474054-53474073 | None:intergenic | 20.0% |
| ! | AAAAATAAGTCAATCCAAAC+GGG | - | chr5.1:53472760-53472779 | MS.gene43711:intron | 25.0% |
| ! | AGGTTTGACAAAATTATTGT+TGG | - | chr5.1:53474405-53474424 | MS.gene43711:intron | 25.0% |
| ! | ATGTTAAGAACAAAGATATC+CGG | - | chr5.1:53474794-53474813 | MS.gene43711:CDS | 25.0% |
| ! | CAAAAATAAGTCAATCCAAA+CGG | - | chr5.1:53472759-53472778 | MS.gene43711:intron | 25.0% |
| ! | GAAAGAGTCTAAAAACTAAA+AGG | + | chr5.1:53474486-53474505 | None:intergenic | 25.0% |
| ! | GTTATGAATGGAAAACAATT+CGG | + | chr5.1:53473559-53473578 | None:intergenic | 25.0% |
| ! | TGTGAAACAAAAACATAGTT+TGG | - | chr5.1:53473804-53473823 | MS.gene43711:intron | 25.0% |
| ! | TGTTTAATGCATATGCTTTA+GGG | - | chr5.1:53472488-53472507 | MS.gene43711:intron | 25.0% |
| ! | TTGTTTAATGCATATGCTTT+AGG | - | chr5.1:53472487-53472506 | MS.gene43711:intron | 25.0% |
| !! | GATTTTCCAAAATCTTAGTT+TGG | - | chr5.1:53473399-53473418 | MS.gene43711:intron | 25.0% |
| !!! | CATGTATTTTTTTACTTGAG+AGG | - | chr5.1:53473719-53473738 | MS.gene43711:intron | 25.0% |
| !!! | GAAGATCCATGTTTTTTATT+TGG | - | chr5.1:53472907-53472926 | MS.gene43711:intron | 25.0% |
| !!! | GTATGTATTTTGAGATATTG+AGG | - | chr5.1:53473229-53473248 | MS.gene43711:intron | 25.0% |
| !!! | GTTGTTGTGATTTTTGAAAT+GGG | - | chr5.1:53472401-53472420 | MS.gene43711:intron | 25.0% |
| !!! | TCTTATATTTTTTTCCCTTG+GGG | + | chr5.1:53474052-53474071 | None:intergenic | 25.0% |
| !!! | TGTTGTTGTGATTTTTGAAA+TGG | - | chr5.1:53472400-53472419 | MS.gene43711:intron | 25.0% |
| !!! | TTGATTTTTTTTTTCCCCAA+GGG | - | chr5.1:53474035-53474054 | MS.gene43711:intron | 25.0% |
| !!! | TTTTCCAAAATCTTAGTTTG+GGG | - | chr5.1:53473401-53473420 | MS.gene43711:intron | 25.0% |
| !!! | TTTTGAAATGGGTTGTTTTT+TGG | - | chr5.1:53472412-53472431 | MS.gene43711:intron | 25.0% |
| AAACAAAACGCATCTTGTAA+CGG | + | chr5.1:53472207-53472226 | None:intergenic | 30.0% | |
| ACATGTTTATCTTACTTGAG+AGG | - | chr5.1:53473288-53473307 | MS.gene43711:intron | 30.0% | |
| AGAAAAGTTGACATGCTTAA+CGG | - | chr5.1:53474550-53474569 | MS.gene43711:CDS | 30.0% | |
| AGGCATTTGTCTGAATTATT+TGG | - | chr5.1:53474151-53474170 | MS.gene43711:intron | 30.0% | |
| GGTAACAGATCTAATCTTAA+TGG | + | chr5.1:53474276-53474295 | None:intergenic | 30.0% | |
| GTAATAGAGCAAATAAACAG+TGG | + | chr5.1:53473771-53473790 | None:intergenic | 30.0% | |
| TAACTTCCTTGGTGAAAAAA+AGG | - | chr5.1:53472285-53472304 | MS.gene43711:intron | 30.0% | |
| TGTTAGTTAACACAGTAAGA+TGG | - | chr5.1:53474456-53474475 | MS.gene43711:intron | 30.0% | |
| ! | AATCTAAAGCATGTAAGAAG+TGG | - | chr5.1:53473036-53473055 | MS.gene43711:intron | 30.0% |
| ! | GATCTGTTACCTTTAAGAAT+TGG | - | chr5.1:53474285-53474304 | MS.gene43711:intron | 30.0% |
| ! | TTACCTTTAAGAATTGGAAC+TGG | - | chr5.1:53474291-53474310 | MS.gene43711:intron | 30.0% |
| !! | TTTGTAATTGCTTAGTTCTG+AGG | - | chr5.1:53472518-53472537 | MS.gene43711:intron | 30.0% |
| !!! | AAAGTACCTTTTTTTCACCA+AGG | + | chr5.1:53472294-53472313 | None:intergenic | 30.0% |
| !!! | CTTGATTTTTTTTTTCCCCA+AGG | - | chr5.1:53474034-53474053 | MS.gene43711:intron | 30.0% |
| !!! | TAGCTTTGGTGTTTTTGTTT+TGG | - | chr5.1:53472955-53472974 | MS.gene43711:intron | 30.0% |
| AAACTGCTTTGACAAGCTTA+TGG | + | chr5.1:53472639-53472658 | None:intergenic | 35.0% | |
| AAGAAAAAGGGTCTAAGAAG+TGG | - | chr5.1:53473499-53473518 | MS.gene43711:intron | 35.0% | |
| AGCTAATTACAGACGAAGAA+GGG | - | chr5.1:53472071-53472090 | MS.gene43711:intron | 35.0% | |
| ATTGAGATTCGTAACTTCCT+TGG | - | chr5.1:53472274-53472293 | MS.gene43711:intron | 35.0% | |
| CTGTAATTAGCTGAAAATCG+AGG | + | chr5.1:53472063-53472082 | None:intergenic | 35.0% | |
| GAACCAGTTCCAATTCTTAA+AGG | + | chr5.1:53474297-53474316 | None:intergenic | 35.0% | |
| GATGACGAGTCTGAATTATT+TGG | - | chr5.1:53474103-53474122 | MS.gene43711:intron | 35.0% | |
| GTGTAATCAAGTCAGAAACA+TGG | + | chr5.1:53473316-53473335 | None:intergenic | 35.0% | |
| TATGTCATCAGGGTTAAGAA+TGG | + | chr5.1:53473106-53473125 | None:intergenic | 35.0% | |
| TGTGCATTTCACATGAATTC+TGG | - | chr5.1:53473204-53473223 | MS.gene43711:intron | 35.0% | |
| ! | AAAATCTTAGTTTGGGGCTT+CGG | - | chr5.1:53473407-53473426 | MS.gene43711:intron | 35.0% |
| ! | TAAGAATTGGAACTGGTTCT+GGG | - | chr5.1:53474298-53474317 | MS.gene43711:intron | 35.0% |
| ! | TTAAGAATTGGAACTGGTTC+TGG | - | chr5.1:53474297-53474316 | MS.gene43711:intron | 35.0% |
| ! | TTTGGTGTATAGTGTGTGAT+TGG | - | chr5.1:53472925-53472944 | MS.gene43711:intron | 35.0% |
| !! | CATGTTGATAATCTCATCAC+TGG | - | chr5.1:53472166-53472185 | MS.gene43711:CDS | 35.0% |
| !!! | AAGGATGAGTTGATTTTGGA+TGG | - | chr5.1:53474601-53474620 | MS.gene43711:CDS | 35.0% |
| !!! | GTTTTGATTTTAACCGTCTC+AGG | - | chr5.1:53474730-53474749 | MS.gene43711:CDS | 35.0% |
| !!! | TACTTGTTTTGTGACTTGAG+AGG | - | chr5.1:53473888-53473907 | MS.gene43711:intron | 35.0% |
| AAATACCTCGATATGTCGTC+AGG | + | chr5.1:53473582-53473601 | None:intergenic | 40.0% | |
| AAATGCCTCGATATGTCATC+AGG | + | chr5.1:53473117-53473136 | None:intergenic | 40.0% | |
| AACTGCAGACCTGGTTAATA+AGG | + | chr5.1:53474660-53474679 | None:intergenic | 40.0% | |
| AATACCTCGATATGTCGTCA+GGG | + | chr5.1:53473581-53473600 | None:intergenic | 40.0% | |
| AATGCCTCGATATGTCATCA+GGG | + | chr5.1:53473116-53473135 | None:intergenic | 40.0% | |
| ACGACATTTGGAAGGAAAAG+TGG | + | chr5.1:53473153-53473172 | None:intergenic | 40.0% | |
| ACTGCAGACCTGGTTAATAA+GGG | + | chr5.1:53474659-53474678 | None:intergenic | 40.0% | |
| AGAAGCTAAAGGTTGAAGCT+TGG | - | chr5.1:53472098-53472117 | MS.gene43711:intron | 40.0% | |
| AGAAGGGAAGAAGAAGCTAA+AGG | - | chr5.1:53472087-53472106 | MS.gene43711:intron | 40.0% | |
| AGATACCATCAAGGAACTTC+CGG | + | chr5.1:53474816-53474835 | None:intergenic | 40.0% | |
| ATCTTGTGCCCTTATTAACC+AGG | - | chr5.1:53474648-53474667 | MS.gene43711:CDS | 40.0% | |
| ATGGTATCTATGTTAGCGAG+AGG | - | chr5.1:53474827-53474846 | MS.gene43711:CDS | 40.0% | |
| CACTATCCTTCGATCTGAAA+AGG | - | chr5.1:53474576-53474595 | MS.gene43711:CDS | 40.0% | |
| CAGCTAATTACAGACGAAGA+AGG | - | chr5.1:53472070-53472089 | MS.gene43711:intron | 40.0% | |
| CATGTGAAATGCACGACATT+TGG | + | chr5.1:53473165-53473184 | None:intergenic | 40.0% | |
| CGCTAACATAGATACCATCA+AGG | + | chr5.1:53474825-53474844 | None:intergenic | 40.0% | |
| CTAAAGGTTGAAGCTTGGTT+TGG | - | chr5.1:53472103-53472122 | MS.gene43711:intron | 40.0% | |
| GCACAACAATCACAATCACA+CGG | + | chr5.1:53473366-53473385 | None:intergenic | 40.0% | |
| GCACACATGTAAGTATACAC+AGG | + | chr5.1:53474687-53474706 | None:intergenic | 40.0% | |
| GTGTGATTGATGTGCATTTC+AGG | - | chr5.1:53473965-53473984 | MS.gene43711:intron | 40.0% | |
| TATGTCGTCAGGGTTATGAA+TGG | + | chr5.1:53473571-53473590 | None:intergenic | 40.0% | |
| TGAAATGCACGACATTTGGA+AGG | + | chr5.1:53473161-53473180 | None:intergenic | 40.0% | |
| TGGTATCTATGTTAGCGAGA+GGG | - | chr5.1:53474828-53474847 | MS.gene43711:CDS | 40.0% | |
| TTAACCCTGATGACATATCG+AGG | - | chr5.1:53473109-53473128 | MS.gene43711:intron | 40.0% | |
| TTAATCCTGACGACATATCG+AGG | - | chr5.1:53474131-53474150 | MS.gene43711:intron | 40.0% | |
| ! | GAAGCCCCAAACTAAGATTT+TGG | + | chr5.1:53473408-53473427 | None:intergenic | 40.0% |
| ! | GTTAATAAGGGCACAAGATC+TGG | + | chr5.1:53474647-53474666 | None:intergenic | 40.0% |
| ! | TATCGAGGCATTTATCTGAG+AGG | - | chr5.1:53474194-53474213 | MS.gene43711:intron | 40.0% |
| ! | TATCGAGGTATTTGTCTGAG+AGG | - | chr5.1:53473589-53473608 | MS.gene43711:intron | 40.0% |
| ! | TCAACTTTTCTCACCTGCAA+CGG | + | chr5.1:53474541-53474560 | None:intergenic | 40.0% |
| ! | TGATTGGTGGTTTGTAGCTT+TGG | - | chr5.1:53472941-53472960 | MS.gene43711:intron | 40.0% |
| !! | CTCATCACTGGTGTTACTAA+GGG | - | chr5.1:53472178-53472197 | MS.gene43711:CDS | 40.0% |
| !! | GGGCTTCGGTATTTTTGTTT+TGG | - | chr5.1:53473421-53473440 | MS.gene43711:intron | 40.0% |
| !! | TCTCATCACTGGTGTTACTA+AGG | - | chr5.1:53472177-53472196 | MS.gene43711:CDS | 40.0% |
| !! | TTGAAGCTTGGTTTGGATCA+AGG | - | chr5.1:53472110-53472129 | MS.gene43711:intron | 40.0% |
| !!! | GGTGAAGGATGAGTTGATTT+TGG | - | chr5.1:53474597-53474616 | MS.gene43711:CDS | 40.0% |
| AAATGCCTCGATATGTCGTC+AGG | + | chr5.1:53474139-53474158 | None:intergenic | 45.0% | |
| ACCTTCAACCTCGATGAGTT+TGG | + | chr5.1:53472002-53472021 | None:intergenic | 45.0% | |
| ACTTTGATGCTTACTCCGTC+GGG | + | chr5.1:53471974-53471993 | None:intergenic | 45.0% | |
| ATAACCCTGACGACATATCG+AGG | - | chr5.1:53473574-53473593 | MS.gene43711:intron | 45.0% | |
| CATCCTCTCTTCCGAAACAA+TGG | - | chr5.1:53471943-53471962 | MS.gene43711:CDS | 45.0% | |
| CATTGTTTCGGAAGAGAGGA+TGG | + | chr5.1:53471945-53471964 | None:intergenic | 45.0% | |
| CCTTCGATCTGAAAAGGTGA+AGG | - | chr5.1:53474582-53474601 | MS.gene43711:CDS | 45.0% | |
| GAAACAATGGACATTCCCGA+CGG | - | chr5.1:53471956-53471975 | MS.gene43711:CDS | 45.0% | |
| GACTTTGATGCTTACTCCGT+CGG | + | chr5.1:53471975-53471994 | None:intergenic | 45.0% | |
| GATATCCGGAAGTTCCTTGA+TGG | - | chr5.1:53474808-53474827 | MS.gene43711:CDS | 45.0% | |
| GGTATCTATGTTAGCGAGAG+GGG | - | chr5.1:53474829-53474848 | MS.gene43711:CDS | 45.0% | |
| GGTGTATAGTGTGTGATTGG+TGG | - | chr5.1:53472928-53472947 | MS.gene43711:intron | 45.0% | |
| GTCGGGAATGTCCATTGTTT+CGG | + | chr5.1:53471957-53471976 | None:intergenic | 45.0% | |
| TATTTGGTTGTCACCGTTGC+AGG | - | chr5.1:53474525-53474544 | MS.gene43711:CDS | 45.0% | |
| TGAAGGTCCACGAGGTAAAT+TGG | - | chr5.1:53472015-53472034 | MS.gene43711:intron | 45.0% | |
| TGTCCATTGTTTCGGAAGAG+AGG | + | chr5.1:53471949-53471968 | None:intergenic | 45.0% | |
| TTTCAGCTTATAGGCCCGTT+TGG | + | chr5.1:53472777-53472796 | None:intergenic | 45.0% | |
| ! | CCTTCACCTTTTCAGATCGA+AGG | + | chr5.1:53474585-53474604 | None:intergenic | 45.0% |
| ! | TATCGAGGCATTTGTCTGAG+AGG | - | chr5.1:53473124-53473143 | MS.gene43711:intron | 45.0% |
| ACAGGAAAGAACTGCAGACC+TGG | + | chr5.1:53474669-53474688 | None:intergenic | 50.0% | |
| AGCAGTACGAATAGCAGCAG+AGG | + | chr5.1:53472140-53472159 | None:intergenic | 50.0% | |
| GCCAAACTCATCGAGGTTGA+AGG | - | chr5.1:53471998-53472017 | MS.gene43711:CDS | 50.0% | |
| TCACGCACCAATTTACCTCG+TGG | + | chr5.1:53472025-53472044 | None:intergenic | 50.0% | |
| AGTCCACGCCAAACTCATCG+AGG | - | chr5.1:53471991-53472010 | MS.gene43711:CDS | 55.0% | |
| ATCGAGGTTGAAGGTCCACG+AGG | - | chr5.1:53472007-53472026 | MS.gene43711:intron | 55.0% | |
| CAACCTCGATGAGTTTGGCG+TGG | + | chr5.1:53471997-53472016 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 53471935 | 53474870 | 53471935 | ID=MS.gene43711 |
| chr5.1 | mRNA | 53471935 | 53474870 | 53471935 | ID=MS.gene43711.t1;Parent=MS.gene43711 |
| chr5.1 | exon | 53474499 | 53474870 | 53474499 | ID=MS.gene43711.t1.exon1;Parent=MS.gene43711.t1 |
| chr5.1 | CDS | 53474499 | 53474870 | 53474499 | ID=cds.MS.gene43711.t1;Parent=MS.gene43711.t1 |
| chr5.1 | exon | 53472136 | 53472258 | 53472136 | ID=MS.gene43711.t1.exon2;Parent=MS.gene43711.t1 |
| chr5.1 | CDS | 53472136 | 53472258 | 53472136 | ID=cds.MS.gene43711.t1;Parent=MS.gene43711.t1 |
| chr5.1 | exon | 53471935 | 53472018 | 53471935 | ID=MS.gene43711.t1.exon3;Parent=MS.gene43711.t1 |
| chr5.1 | CDS | 53471935 | 53472018 | 53471935 | ID=cds.MS.gene43711.t1;Parent=MS.gene43711.t1 |
| Gene Sequence |
| Protein sequence |
