AlfalfaGEDB | MS.gene06803

M. sativa cultivar XinJiangDaYe / MS.gene06803

KEGG: K02940
GO: GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0019538 GO:0019843 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0071704 GO:0097159 GO:0110165 GO:1901363 GO:1901564 GO:1901566 GO:1901576
PFAM: PF00347.26

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene06803.t1	XP_003602417.1	99.5	184	1	0	1	184	10	193	9.10E-97	362.8

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene06803.t1	P30707	96.7	184	6	0	1	184	10	193	6.0e-97	354.8

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene06803.t1	G7J9M6	99.5	184	1	0	1	184	10	193	6.6e-97	362.8

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049361	MS.gene06803	0.843647	1.23E-58	-1.69E-46
MS.gene049387	MS.gene06803	0.830846	2.33E-55	-1.69E-46
MS.gene050134	MS.gene06803	0.901675	2.11E-78	-1.69E-46
MS.gene050791	MS.gene06803	0.930775	1.00E-93	-1.69E-46
MS.gene050912	MS.gene06803	0.851852	6.78E-61	-1.69E-46
MS.gene051984	MS.gene06803	0.864477	1.18E-64	-1.69E-46
MS.gene052412	MS.gene06803	0.819706	1.01E-52	-1.69E-46
MS.gene052664	MS.gene06803	0.846631	1.92E-59	-1.69E-46
MS.gene052666	MS.gene06803	0.810641	1.04E-50	-1.69E-46
MS.gene053224	MS.gene06803	0.884059	2.65E-71	-1.69E-46
MS.gene054624	MS.gene06803	0.810158	1.32E-50	-1.69E-46
MS.gene056917	MS.gene06803	0.802819	4.68E-49	-1.69E-46
MS.gene057092	MS.gene06803	0.845039	5.21E-59	-1.69E-46
MS.gene057272	MS.gene06803	0.939365	1.44E-99	-1.69E-46
MS.gene057641	MS.gene06803	0.840986	6.25E-58	-1.69E-46
MS.gene057643	MS.gene06803	0.865718	4.82E-65	-1.69E-46
MS.gene059340	MS.gene06803	0.845626	3.61E-59	-1.69E-46
MS.gene060483	MS.gene06803	0.878175	3.47E-69	-1.69E-46

PPI:

Gene1	Gene2	Type
MS.gene06803	MS.gene06583	PPI
MS.gene43711	MS.gene06803	PPI
MS.gene76728	MS.gene06803	PPI
MS.gene06803	MS.gene42075	PPI
MS.gene06803	MS.gene82237	PPI
MS.gene06803	MS.gene77045	PPI
MS.gene06803	MS.gene48819	PPI
MS.gene06803	MS.gene013477	PPI
MS.gene06803	MS.gene057272	PPI
MS.gene06581	MS.gene06803	PPI
MS.gene87743	MS.gene06803	PPI
MS.gene87064	MS.gene06803	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene06803.t1	MTR_3g093110	99.457	184	1	0	1	184	10	193	3.50e-132	368
MS.gene06803.t1	MTR_5g068780	86.885	183	24	0	1	183	10	192	5.68e-120	337

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene06803.t1	AT1G33140	86.486	185	24	1	1	184	10	194	2.94e-115	325
MS.gene06803.t1	AT1G33120	86.486	185	24	1	1	184	10	194	2.94e-115	325
MS.gene06803.t1	AT4G10450	83.784	185	29	1	1	184	10	194	1.63e-113	321
MS.gene06803.t1	AT4G10450	83.439	157	25	1	1	156	10	166	1.18e-94	273

Find 0 sgRNAs with CRISPR-Local

Find 67 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TATAAATTAGATTAAAACTA+GGG	+	24276:8737-8756	MS.gene06803:intergenic	10.0%
!!	TTATAAATTAGATTAAAACT+AGG	+	24276:8738-8757	MS.gene06803:intergenic	10.0%
!!!	ATGAGTTAATTTTTTTATTT+TGG	-	24276:8880-8899	MS.gene06803:intron	10.0%
!!!	TCTTTAATTTCTTCAATTTT+AGG	-	24276:8654-8673	MS.gene06803:intron	15.0%
!!	GAGATAATGTCTAATTTATT+TGG	-	24276:8914-8933	MS.gene06803:intron	20.0%
!	ACAAAAATAAAGCATGTTCA+TGG	+	24276:9154-9173	MS.gene06803:intergenic	25.0%
!	CACAAATTAAAGTGAAACTA+AGG	+	24276:8688-8707	MS.gene06803:intergenic	25.0%
!	GAATCGAATAATGTTGTATT+AGG	-	24276:8987-9006	MS.gene06803:CDS	25.0%
!	GTCTAATTTATTTGGTTATC+TGG	-	24276:8922-8941	MS.gene06803:intron	25.0%
	ATGTTAAGAAGAAGGATATC+AGG	-	24276:9235-9254	MS.gene06803:CDS	30.0%
	GAATAATGTTGTATTAGGTG+AGG	-	24276:8992-9011	MS.gene06803:CDS	30.0%
	GGTATTTATGTTAGTGAGAA+GGG	-	24276:9270-9289	MS.gene06803:CDS	30.0%
	TGATATCCTTCTTCTTAACA+TGG	+	24276:9236-9255	MS.gene06803:intergenic	30.0%
	TGGTATTTATGTTAGTGAGA+AGG	-	24276:9269-9288	MS.gene06803:CDS	30.0%
!	TTTACTAGTTTGTGAATCTG+TGG	-	24276:8960-8979	MS.gene06803:intron	30.0%
	AAACTTTCTTGGAGAGAAGA+AGG	-	24276:8600-8619	MS.gene06803:intron	35.0%
	ATGTTCATGGACCATGTTAA+GGG	+	24276:9141-9160	MS.gene06803:intergenic	35.0%
	ATTGAGATCCGAAACTTTCT+TGG	-	24276:8589-8608	MS.gene06803:intron	35.0%
	GAAATGCCATGTTAAGAAGA+AGG	-	24276:9227-9246	MS.gene06803:CDS	35.0%
	GATATCAGGAAGTTTCTTGA+TGG	-	24276:9249-9268	MS.gene06803:CDS	35.0%
	TCTTCTCTCCAAGAAAGTTT+CGG	+	24276:8600-8619	MS.gene06803:intergenic	35.0%
	TTATGTTAGTGAGAAGGGAT+CGG	-	24276:9275-9294	MS.gene06803:CDS	35.0%
	TTCAATTGTTCGATCTGAGA+AGG	-	24276:9038-9057	MS.gene06803:CDS	35.0%
!	AGGAAAGTAGATTTGCTTGA+TGG	-	24276:9012-9031	MS.gene06803:CDS	35.0%
!	ATGACATTGAGCTTGTTTCT+AGG	-	24276:9088-9107	MS.gene06803:CDS	35.0%
!!	GAATGTTGTTGTTGCGTTTT+TGG	-	24276:9200-9219	MS.gene06803:CDS	35.0%
	AGACAAACCTCATCTTGTAG+CGG	+	24276:8522-8541	MS.gene06803:intergenic	40.0%
	CATGTTCATGGACCATGTTA+AGG	+	24276:9142-9161	MS.gene06803:intergenic	40.0%
	CGGTTATGAGATCAAAATCG+AGG	+	24276:8378-8397	MS.gene06803:intergenic	40.0%
	CTTCTTCTTGCCTTCTTCAT+CGG	+	24276:8398-8417	MS.gene06803:intergenic	40.0%
	GATCTCATAACCGATGAAGA+AGG	-	24276:8385-8404	MS.gene06803:intron	40.0%
	GTCATGTGCACTTATTAACC+AGG	-	24276:9110-9129	MS.gene06803:CDS	40.0%
	TAGCATCAAGGTTAACGCTA+AGG	-	24276:8297-8316	MS.gene06803:CDS	40.0%
	TGTTCATGGACCATGTTAAG+GGG	+	24276:9140-9159	MS.gene06803:intergenic	40.0%
!!	CTCAATCGACTTGTTGTCAT+TGG	+	24276:8575-8594	MS.gene06803:intergenic	40.0%
!!!	AAGGATGAGGTTGTTTTGGA+TGG	-	24276:9063-9082	MS.gene06803:CDS	40.0%
	ATCTGAGAAGGTGAAGGATG+AGG	-	24276:9050-9069	MS.gene06803:CDS	45.0%
	CACGTTGAGAATCTCATCAC+TGG	-	24276:8481-8500	MS.gene06803:CDS	45.0%
	CAGTGATGAGATTCTCAACG+TGG	+	24276:8483-8502	MS.gene06803:intergenic	45.0%
	TGTTCGATCTGAGAAGGTGA+AGG	-	24276:9044-9063	MS.gene06803:CDS	45.0%
!	GGTGAAGGATGAGGTTGTTT+TGG	-	24276:9059-9078	MS.gene06803:CDS	45.0%
!!	ATTGGTGATGCTAGCGTTGA+TGG	+	24276:8557-8576	MS.gene06803:intergenic	45.0%
!!	TTGGTGATGCTAGCGTTGAT+GGG	+	24276:8556-8575	MS.gene06803:intergenic	45.0%
	ACCAGGTACACCCCTTAACA+TGG	-	24276:9127-9146	MS.gene06803:CDS	50.0%
	AGAAGCTCAAGATCGATGCC+TGG	-	24276:8413-8432	MS.gene06803:intron	50.0%
	AGGGTTTCCGCTACAAGATG+AGG	-	24276:8512-8531	MS.gene06803:CDS	50.0%
	CTCAAGATCGATGCCTGGTT+CGG	-	24276:8418-8437	MS.gene06803:intron	50.0%
	GCTAAGGTCATCGAAGTCGA+AGG	-	24276:8313-8332	MS.gene06803:CDS	50.0%
	TGTTAGTGAGAAGGGATCGG+TGG	-	24276:9278-9297	MS.gene06803:CDS	50.0%
!	ACCATGTTAAGGGGTGTACC+TGG	+	24276:9131-9150	MS.gene06803:intergenic	50.0%
!	CATCTTGTAGCGGAAACCCT+TGG	+	24276:8512-8531	MS.gene06803:intergenic	50.0%
!!	CTCATCACTGGTGTCACCAA+GGG	-	24276:8493-8512	MS.gene06803:CDS	50.0%
!!	TCTCATCACTGGTGTCACCA+AGG	-	24276:8492-8511	MS.gene06803:CDS	50.0%
!!	TGGTGATGCTAGCGTTGATG+GGG	+	24276:8555-8574	MS.gene06803:intergenic	50.0%
	ACCTTGATGCTAACGCCGTC+AGG	+	24276:8289-8308	MS.gene06803:intergenic	55.0%
	ATCGAAGTCGAAGGACCTCG+CGG	-	24276:8322-8341	MS.gene06803:CDS	55.0%
	CCTTGATGCTAACGCCGTCA+GGG	+	24276:8288-8307	MS.gene06803:intergenic	55.0%
!	GCTGAGAGCAGTTCTGATGG+CGG	+	24276:8461-8480	MS.gene06803:intergenic	55.0%
!	GGTTTTCCTGGAACCGAACC+AGG	+	24276:8434-8453	MS.gene06803:intergenic	55.0%
!	GTGGCTGAGAGCAGTTCTGA+TGG	+	24276:8464-8483	MS.gene06803:intergenic	55.0%
	CCCTGACGGCGTTAGCATCA+AGG	-	24276:8285-8304	MS.gene06803:CDS	60.0%
	TCACGAACAAGCTTCCCGCG+AGG	+	24276:8340-8359	MS.gene06803:intergenic	60.0%
	TCGAAGTCGAAGGACCTCGC+GGG	-	24276:8323-8342	MS.gene06803:CDS	60.0%
!!	GAGAGCAGTTCTGATGGCGG+CGG	+	24276:8458-8477	MS.gene06803:intergenic	60.0%
!!	TCGATGCCTGGTTCGGTTCC+AGG	-	24276:8425-8444	MS.gene06803:intron	60.0%
!!	AGCAGTTCTGATGGCGGCGG+AGG	+	24276:8455-8474	MS.gene06803:intergenic	65.0%
!!	GATGGCGGCGGAGGTTTTCC+TGG	+	24276:8446-8465	MS.gene06803:intergenic	65.0%

Chromosome	Type	Strat	End	Strand	Name
24276	gene	8277	9314	8277	ID=MS.gene06803
24276	mRNA	8277	9314	8277	ID=MS.gene06803.t1;Parent=MS.gene06803
24276	exon	8970	9314	8970	ID=MS.gene06803.t1.exon1;Parent=MS.gene06803.t1
24276	CDS	8970	9314	8970	ID=cds.MS.gene06803.t1;Parent=MS.gene06803.t1
24276	exon	8460	8582	8460	ID=MS.gene06803.t1.exon2;Parent=MS.gene06803.t1
24276	CDS	8460	8582	8460	ID=cds.MS.gene06803.t1;Parent=MS.gene06803.t1
24276	exon	8277	8363	8277	ID=MS.gene06803.t1.exon3;Parent=MS.gene06803.t1
24276	CDS	8277	8363	8277	ID=cds.MS.gene06803.t1;Parent=MS.gene06803.t1

Gene Sequence

>MS.gene06803

ATGAACATCCCTGACGGCGTTAGCATCAAGGTTAACGCTAAGGTCATCGAAGTCGAAGGACCTCGCGGGAAGCTTGTTCGTGATTTCAAGCATCTCAACCTCGATTTTGATCTCATAACCGATGAAGAAGGCAAGAAGAAGCTCAAGATCGATGCCTGGTTCGGTTCCAGGAAAACCTCCGCCGCCATCAGAACTGCTCTCAGCCACGTTGAGAATCTCATCACTGGTGTCACCAAGGGTTTCCGCTACAAGATGAGGTTTGTCTATGCTCATTTCCCCATCAACGCTAGCATCACCAATGACAACAAGTCGATTGAGATCCGAAACTTTCTTGGAGAGAAGAAGGTATTCAATTTTTTTCGTAATCATTATTTTTATCTTTAATTTCTTCAATTTTAGGTTAAATAACCTTAGTTTCACTTTAATTTGTGATCTTATGCAATTTTAGACTTGATAACCCTAGTTTTAATCTAATTTATAATCTGTAATTAGATCATTTTGTAATAATTTTCATATATTACTTACGTTAAACATTAATTTTTATTAGTGCTAATGTTTTTTTGTGATTAAAAAACGAGTTAATCTTTTATCTGTTGATTAAAAATGAGTTAATTTTTTTATTTTGGTAATTAAAAATGAGATAATGTCTAATTTATTTGGTTATCTGGTTTAGTTATTTGTGATTTACTAGTTTGTGAATCTGTGGTATTGAATCGAATAATGTTGTATTAGGTGAGGAAAGTAGATTTGCTTGATGGAGTTTCAATTGTTCGATCTGAGAAGGTGAAGGATGAGGTTGTTTTGGATGGAAATGACATTGAGCTTGTTTCTAGGTCATGTGCACTTATTAACCAGGTACACCCCTTAACATGGTCCATGAACATGCTTTATTTTTGTGCATTTTGCTCTTTGTTTATGTTTCTGAATGTTGTTGTTGCGTTTTTGGAACAGAAATGCCATGTTAAGAAGAAGGATATCAGGAAGTTTCTTGATGGTATTTATGTTAGTGAGAAGGGATCGGTGGTAACTGAAGAATAG

Protein sequence

>MS.gene06803.t1

MNIPDGVSIKVNAKVIEVEGPRGKLVRDFKHLNLDFDLITDEEGKKKLKIDAWFGSRKTSAAIRTALSHVENLITGVTKGFRYKMRFVYAHFPINASITNDNKSIEIRNFLGEKKVRKVDLLDGVSIVRSEKVKDEVVLDGNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSEKGSVVTEE