Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43825.t1 | XP_003615684.2 | 97.5 | 594 | 14 | 1 | 1 | 593 | 1 | 594 | 0.00E+00 | 1142.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43825.t1 | Q944C1 | 61.5 | 597 | 220 | 4 | 1 | 593 | 7 | 597 | 1.9e-216 | 753.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43825.t1 | G7KE98 | 97.5 | 594 | 14 | 1 | 1 | 593 | 1 | 594 | 0.0e+00 | 1142.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050338 | MS.gene43825 | 0.814357 | 1.61E-51 | -1.69E-46 |
| MS.gene050577 | MS.gene43825 | -0.802914 | 4.48E-49 | -1.69E-46 |
| MS.gene050894 | MS.gene43825 | 0.812078 | 5.08E-51 | -1.69E-46 |
| MS.gene051651 | MS.gene43825 | 0.800823 | 1.20E-48 | -1.69E-46 |
| MS.gene053218 | MS.gene43825 | 0.807486 | 4.94E-50 | -1.69E-46 |
| MS.gene05470 | MS.gene43825 | -0.820713 | 5.93E-53 | -1.69E-46 |
| MS.gene055251 | MS.gene43825 | 0.874735 | 5.35E-68 | -1.69E-46 |
| MS.gene055748 | MS.gene43825 | -0.825352 | 4.91E-54 | -1.69E-46 |
| MS.gene055751 | MS.gene43825 | -0.830725 | 2.50E-55 | -1.69E-46 |
| MS.gene05589 | MS.gene43825 | -0.823313 | 1.48E-53 | -1.69E-46 |
| MS.gene056266 | MS.gene43825 | -0.850467 | 1.67E-60 | -1.69E-46 |
| MS.gene058015 | MS.gene43825 | 0.803049 | 4.20E-49 | -1.69E-46 |
| MS.gene058334 | MS.gene43825 | 0.811348 | 7.32E-51 | -1.69E-46 |
| MS.gene060076 | MS.gene43825 | 0.856544 | 3.00E-62 | -1.69E-46 |
| MS.gene060077 | MS.gene43825 | 0.803934 | 2.75E-49 | -1.69E-46 |
| MS.gene060982 | MS.gene43825 | -0.806082 | 9.78E-50 | -1.69E-46 |
| MS.gene061044 | MS.gene43825 | 0.873224 | 1.74E-67 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43825.t1 | MTR_5g071010 | 97.138 | 594 | 16 | 1 | 1 | 593 | 1 | 594 | 0.0 | 1207 |
| MS.gene43825.t1 | MTR_5g082620 | 61.681 | 595 | 212 | 8 | 3 | 592 | 5 | 588 | 0.0 | 759 |
| MS.gene43825.t1 | MTR_3g070720 | 61.616 | 594 | 216 | 5 | 3 | 593 | 9 | 593 | 0.0 | 748 |
| MS.gene43825.t1 | MTR_5g082590 | 59.524 | 588 | 212 | 7 | 14 | 592 | 11 | 581 | 0.0 | 721 |
| MS.gene43825.t1 | MTR_3g069280 | 59.932 | 589 | 213 | 6 | 10 | 593 | 2 | 572 | 0.0 | 703 |
| MS.gene43825.t1 | MTR_5g082580 | 52.796 | 608 | 256 | 9 | 4 | 592 | 11 | 606 | 0.0 | 641 |
| MS.gene43825.t1 | MTR_3g070710 | 54.276 | 573 | 245 | 9 | 24 | 592 | 27 | 586 | 0.0 | 610 |
| MS.gene43825.t1 | MTR_3g070560 | 53.147 | 572 | 255 | 7 | 22 | 590 | 24 | 585 | 0.0 | 597 |
| MS.gene43825.t1 | MTR_3g070720 | 59.639 | 498 | 189 | 5 | 3 | 497 | 9 | 497 | 0.0 | 592 |
| MS.gene43825.t1 | MTR_5g071040 | 51.695 | 590 | 247 | 9 | 4 | 592 | 20 | 572 | 0.0 | 583 |
| MS.gene43825.t1 | MTR_3g070720 | 58.936 | 470 | 181 | 5 | 3 | 469 | 9 | 469 | 0.0 | 545 |
| MS.gene43825.t1 | MTR_3g070560 | 54.415 | 419 | 182 | 4 | 173 | 590 | 2 | 412 | 1.52e-159 | 463 |
| MS.gene43825.t1 | MTR_3g070720 | 57.554 | 417 | 165 | 5 | 3 | 416 | 9 | 416 | 2.05e-157 | 457 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43825.t1 | AT5G58700 | 62.647 | 597 | 213 | 5 | 1 | 593 | 7 | 597 | 0.0 | 782 |
| MS.gene43825.t1 | AT5G58700 | 62.647 | 597 | 213 | 5 | 1 | 593 | 7 | 597 | 0.0 | 782 |
| MS.gene43825.t1 | AT2G40116 | 58.592 | 611 | 216 | 6 | 3 | 592 | 18 | 612 | 0.0 | 737 |
| MS.gene43825.t1 | AT3G08510 | 61.111 | 594 | 211 | 9 | 3 | 593 | 5 | 581 | 0.0 | 729 |
| MS.gene43825.t1 | AT3G08510 | 61.111 | 594 | 211 | 9 | 3 | 593 | 5 | 581 | 0.0 | 729 |
| MS.gene43825.t1 | AT5G58690 | 57.903 | 601 | 218 | 6 | 1 | 593 | 5 | 578 | 0.0 | 709 |
| MS.gene43825.t1 | AT5G58690 | 57.903 | 601 | 218 | 6 | 1 | 593 | 5 | 578 | 0.0 | 709 |
| MS.gene43825.t1 | AT5G58690 | 58.834 | 583 | 205 | 6 | 19 | 593 | 4 | 559 | 0.0 | 696 |
| MS.gene43825.t1 | AT3G55940 | 58.794 | 597 | 223 | 8 | 3 | 593 | 5 | 584 | 0.0 | 696 |
| MS.gene43825.t1 | AT5G58700 | 66.327 | 490 | 157 | 4 | 108 | 593 | 4 | 489 | 0.0 | 671 |
| MS.gene43825.t1 | AT3G08510 | 58.081 | 594 | 200 | 10 | 3 | 593 | 5 | 552 | 0.0 | 667 |
| MS.gene43825.t1 | AT3G08510 | 58.081 | 594 | 200 | 10 | 3 | 593 | 5 | 552 | 0.0 | 667 |
| MS.gene43825.t1 | AT5G58670 | 50.000 | 590 | 256 | 6 | 3 | 590 | 4 | 556 | 0.0 | 580 |
| MS.gene43825.t1 | AT4G38530 | 48.731 | 591 | 261 | 10 | 3 | 590 | 4 | 555 | 0.0 | 556 |
| MS.gene43825.t1 | AT3G47290 | 40.823 | 583 | 286 | 9 | 12 | 592 | 5 | 530 | 3.63e-145 | 430 |
| MS.gene43825.t1 | AT3G47290 | 41.021 | 568 | 276 | 9 | 12 | 577 | 5 | 515 | 7.84e-141 | 421 |
| MS.gene43825.t1 | AT3G47220 | 41.414 | 594 | 274 | 16 | 8 | 592 | 2 | 530 | 2.38e-136 | 408 |
Find 140 sgRNAs with CRISPR-Local
Find 310 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGATTGAATACCTCATTATT+TGG | 0.164810 | 5.2:-59802925 | None:intergenic |
| AACATCATCTTTGGTGGAAT+TGG | 0.217676 | 5.2:-59800533 | None:intergenic |
| ATAGAGTCTGCGTGTGTTTC+CGG | 0.231285 | 5.2:+59799061 | MS.gene43825:CDS |
| TCTATTCAATGCCTTTATAA+TGG | 0.238678 | 5.2:-59800479 | None:intergenic |
| AGAATTCTCCCTCACACTTT+TGG | 0.243178 | 5.2:-59801860 | None:intergenic |
| GAGGTTTCTCGTGGAGGTTC+AGG | 0.256553 | 5.2:+59799185 | MS.gene43825:CDS |
| TTGATTCATCATCATCATTC+TGG | 0.265512 | 5.2:-59802230 | None:intergenic |
| AGCGAATGCATGTTCCTTAA+TGG | 0.270928 | 5.2:-59801368 | None:intergenic |
| GCAAGTTCAGGGATAGTTAA+AGG | 0.272027 | 5.2:-59803974 | None:intergenic |
| CAAATGTTTGAAATCCATTA+AGG | 0.273167 | 5.2:+59801354 | MS.gene43825:CDS |
| GACCAGTATATATGAAATAA+TGG | 0.273183 | 5.2:-59800405 | None:intergenic |
| TTCACTTCCAACTTATCTTT+AGG | 0.274248 | 5.2:-59802946 | None:intergenic |
| TTGGAATTTAAGTACTCTTT+TGG | 0.290635 | 5.2:-59801841 | None:intergenic |
| CTATTCAATGCCTTTATAAT+GGG | 0.310008 | 5.2:-59800478 | None:intergenic |
| ATCCTATACTTCAGTTCTTC+AGG | 0.310159 | 5.2:-59801799 | None:intergenic |
| CAAAGACAATAGAGGATAAC+TGG | 0.310479 | 5.2:+59803921 | MS.gene43825:CDS |
| TCCCATTATTTCATATATAC+TGG | 0.316971 | 5.2:+59800403 | MS.gene43825:CDS |
| CAGTGGCACCTCAGGAAGTC+AGG | 0.328687 | 5.2:+59799106 | MS.gene43825:CDS |
| CGCTCGGAACTGATCTTATT+AGG | 0.333680 | 5.2:+59802415 | MS.gene43825:CDS |
| GAGCTTGTTCACTTAAACTA+AGG | 0.337156 | 5.2:-59802374 | None:intergenic |
| TAGATGATTACTCAAACATT+TGG | 0.350901 | 5.2:+59801727 | MS.gene43825:intron |
| CAATCCTCCTATTAGATCTA+AGG | 0.351697 | 5.2:+59799350 | MS.gene43825:CDS |
| TTCTTCATTGTTACATCAGC+TGG | 0.355429 | 5.2:-59803896 | None:intergenic |
| TAGTGATGTTCCCATTATAA+AGG | 0.361639 | 5.2:+59800468 | MS.gene43825:CDS |
| AGGGATATGGTAGAAATCTT+TGG | 0.373538 | 5.2:+59802827 | MS.gene43825:CDS |
| GTGTGGCAGGTTGGCATAGC+TGG | 0.382656 | 5.2:+59803869 | MS.gene43825:intron |
| TAAAACAAGAACATCATCTT+TGG | 0.382673 | 5.2:-59800542 | None:intergenic |
| ACATCATCTTTGGTGGAATT+GGG | 0.394799 | 5.2:-59800532 | None:intergenic |
| TGTGGGAGATGGATGGAGTA+TGG | 0.405885 | 5.2:+59803073 | MS.gene43825:CDS |
| TGTTCTAATTCAGGTTCATC+AGG | 0.406713 | 5.2:+59800363 | MS.gene43825:intron |
| GCATTCAATATGCAGGGATA+TGG | 0.411345 | 5.2:+59802814 | MS.gene43825:CDS |
| CCTACATTCATAAGAAAGTC+TGG | 0.411811 | 5.2:-59802901 | None:intergenic |
| GAGTTGATTTCCAGTGAGAT+AGG | 0.412212 | 5.2:-59800434 | None:intergenic |
| GGATTCTGATGAAGATGAAT+GGG | 0.415064 | 5.2:+59801909 | MS.gene43825:CDS |
| CGGGGAGGCAGTGGCACCTC+AGG | 0.416768 | 5.2:+59799098 | MS.gene43825:CDS |
| CTGAGGTGCCACTGCCTCCC+CGG | 0.428477 | 5.2:-59799097 | None:intergenic |
| GAGTTGTTGAGCTTGATATT+TGG | 0.429323 | 5.2:+59800509 | MS.gene43825:CDS |
| TACATTACCTTAGATCTAAT+AGG | 0.436253 | 5.2:-59799357 | None:intergenic |
| CCACGAGAAACCTCCGGAAC+TGG | 0.441468 | 5.2:-59799176 | None:intergenic |
| ACTACAAGCCACTGGTTGGC+TGG | 0.443070 | 5.2:+59802770 | MS.gene43825:CDS |
| ACATGACTCCGGACCAGTTC+CGG | 0.445043 | 5.2:+59799163 | MS.gene43825:CDS |
| GTTTAAGTCCGGGGAGGCAG+TGG | 0.445954 | 5.2:+59799089 | MS.gene43825:CDS |
| AAAAGTGTGAGGGAGAATTC+TGG | 0.446709 | 5.2:+59801862 | MS.gene43825:CDS |
| ACCAGTATATATGAAATAAT+GGG | 0.446982 | 5.2:-59800404 | None:intergenic |
| ATTCAATCCTAAAGATAAGT+TGG | 0.447209 | 5.2:+59802939 | MS.gene43825:CDS |
| CTGGATGCATGGTGCTCAAA+TGG | 0.447345 | 5.2:+59802789 | MS.gene43825:CDS |
| TCTGCGTGTGTTTCCGGCGG+AGG | 0.447743 | 5.2:+59799067 | MS.gene43825:CDS |
| GCTTCCTTCAAACTACCCTT+AGG | 0.448231 | 5.2:-59802321 | None:intergenic |
| TTCCACTTTACGATCGAAAA+GGG | 0.453469 | 5.2:+59804101 | MS.gene43825:CDS |
| CCAGACTTTCTTATGAATGT+AGG | 0.454137 | 5.2:+59802901 | MS.gene43825:CDS |
| TGCACAAAATGAAGATGATA+AGG | 0.454955 | 5.2:+59801957 | MS.gene43825:CDS |
| CCTTCAAGCAAAAGCTGCTC+AGG | 0.456718 | 5.2:+59801441 | MS.gene43825:CDS |
| CAAGTTCAGGGATAGTTAAA+GGG | 0.458544 | 5.2:-59803973 | None:intergenic |
| AGGTTTCTCGTGGAGGTTCA+GGG | 0.463842 | 5.2:+59799186 | MS.gene43825:CDS |
| AGGATTCTGATGAAGATGAA+TGG | 0.465159 | 5.2:+59801908 | MS.gene43825:CDS |
| ACTCTGAGCAAAGCAAGTTC+AGG | 0.467611 | 5.2:-59803986 | None:intergenic |
| AAGAGTTATTACGACTGGAT+AGG | 0.471846 | 5.2:-59801398 | None:intergenic |
| AGAGTTATTACGACTGGATA+GGG | 0.472361 | 5.2:-59801397 | None:intergenic |
| AGGATAACTGGATACCTACT+TGG | 0.472804 | 5.2:+59803933 | MS.gene43825:CDS |
| TCTCGTGGAGGTTCAGGGTG+AGG | 0.473228 | 5.2:+59799191 | MS.gene43825:CDS |
| AATGGTTGCATTCAATATGC+AGG | 0.473650 | 5.2:+59802807 | MS.gene43825:CDS |
| TCCGGCGGAGGTTTAAGTCC+GGG | 0.476031 | 5.2:+59799079 | MS.gene43825:CDS |
| CTTGAAGGTCTGAGGTAAGA+TGG | 0.476823 | 5.2:-59801426 | None:intergenic |
| GGGAGAAGTACAACTCAGTT+AGG | 0.485603 | 5.2:+59804122 | MS.gene43825:CDS |
| GGAAGTGAAGAAGACTCTTA+AGG | 0.485765 | 5.2:+59802960 | MS.gene43825:CDS |
| AAACATTTGATCAAATCGAC+AGG | 0.486654 | 5.2:-59801340 | None:intergenic |
| GTTCCACTTTACGATCGAAA+AGG | 0.487602 | 5.2:+59804100 | MS.gene43825:CDS |
| CGTCTAATCGCTATTCATGC+TGG | 0.488281 | 5.2:+59802294 | MS.gene43825:CDS |
| TTCCGGCGGAGGTTTAAGTC+CGG | 0.492663 | 5.2:+59799078 | MS.gene43825:CDS |
| AAGTGAACAAGCTCTTGAAA+AGG | 0.493412 | 5.2:+59802383 | MS.gene43825:CDS |
| CCACTGGTTGGCTGGATGCA+TGG | 0.495539 | 5.2:+59802778 | MS.gene43825:CDS |
| AGAAACCTCCGGAACTGGTC+CGG | 0.496532 | 5.2:-59799171 | None:intergenic |
| AAAACCTAAGGGTAGTTTGA+AGG | 0.497454 | 5.2:+59802317 | MS.gene43825:CDS |
| ATTATAAAGGCATTGAATAG+AGG | 0.500119 | 5.2:+59800481 | MS.gene43825:CDS |
| GAGGTGACACGTGTACCTTT+CGG | 0.500944 | 5.2:-59802742 | None:intergenic |
| TGAATAGGTTAAAATATATG+TGG | 0.505166 | 5.2:+59803055 | MS.gene43825:intron |
| CTCTGAGCAAAGCAAGTTCA+GGG | 0.507709 | 5.2:-59803985 | None:intergenic |
| TATTCATGCTGGAAAACCTA+AGG | 0.508266 | 5.2:+59802305 | MS.gene43825:CDS |
| GACGCTTATACTCACTCTCC+TGG | 0.509354 | 5.2:-59802275 | None:intergenic |
| ATGGAATGTTTAGATCCAAT+GGG | 0.511525 | 5.2:+59802857 | MS.gene43825:CDS |
| CATGGAATGTTTAGATCCAA+TGG | 0.512922 | 5.2:+59802856 | MS.gene43825:CDS |
| CACCTGAAGAACTGAAGTAT+AGG | 0.517294 | 5.2:+59801797 | MS.gene43825:CDS |
| GAAGAAAACAAAGACAATAG+AGG | 0.517311 | 5.2:+59803913 | MS.gene43825:CDS |
| AACAAGAACATCATCTTTGG+TGG | 0.520787 | 5.2:-59800539 | None:intergenic |
| TCTTCAAGAGTTATTACGAC+TGG | 0.522758 | 5.2:-59801403 | None:intergenic |
| GGTCATAACTCCTATCTCAC+TGG | 0.522887 | 5.2:+59800424 | MS.gene43825:CDS |
| GTTGTTGAAATCAAAATCAA+AGG | 0.527912 | 5.2:+59801888 | MS.gene43825:CDS |
| TACTTCAGTTCTTCAGGTGA+CGG | 0.528094 | 5.2:-59801793 | None:intergenic |
| GAAAAGGCTGCTGAGTCGCT+CGG | 0.537888 | 5.2:+59802399 | MS.gene43825:CDS |
| CCGATCACTGAACTAAAACA+AGG | 0.539878 | 5.2:+59804067 | MS.gene43825:CDS |
| GTTAAAATATATGTGGGAGA+TGG | 0.540418 | 5.2:+59803062 | MS.gene43825:CDS |
| GGAACTGGTCCGGAGTCATG+TGG | 0.546732 | 5.2:-59799161 | None:intergenic |
| CCCCGGACTTAAACCTCCGC+CGG | 0.550701 | 5.2:-59799080 | None:intergenic |
| GTGAACTCTTCTTCCCAAGT+AGG | 0.552488 | 5.2:-59803947 | None:intergenic |
| AAATATATGTGGGAGATGGA+TGG | 0.558373 | 5.2:+59803066 | MS.gene43825:CDS |
| GAACCTCCACGAGAAACCTC+CGG | 0.559546 | 5.2:-59799182 | None:intergenic |
| CCGGCGGAGGTTTAAGTCCG+GGG | 0.562848 | 5.2:+59799080 | MS.gene43825:CDS |
| AGTGGCACCTCAGGAAGTCA+GGG | 0.565531 | 5.2:+59799107 | MS.gene43825:CDS |
| TTCAACAAGTATGCTGAAGG+TGG | 0.567334 | 5.2:+59799135 | MS.gene43825:CDS |
| GTTCCGGAGGTTTCTCGTGG+AGG | 0.568490 | 5.2:+59799179 | MS.gene43825:CDS |
| TCAACAAGTATGCTGAAGGT+GGG | 0.570611 | 5.2:+59799136 | MS.gene43825:CDS |
| TGGAGGAAGTGTTGCAGAAG+CGG | 0.572705 | 5.2:+59799253 | MS.gene43825:CDS |
| CTTAAATTCCAAAAGTGTGA+GGG | 0.577857 | 5.2:+59801852 | MS.gene43825:CDS |
| TGAACTTGCTTTGCTCAGAG+TGG | 0.580019 | 5.2:+59803988 | MS.gene43825:CDS |
| TGATGAAGATGAATGGGGAA+AGG | 0.584071 | 5.2:+59801915 | MS.gene43825:CDS |
| CCAGTTCCGGAGGTTTCTCG+TGG | 0.584288 | 5.2:+59799176 | MS.gene43825:CDS |
| GAATGTAGGTCCAAATAATG+AGG | 0.588015 | 5.2:+59802915 | MS.gene43825:CDS |
| CTCGTCGAACTACAAGCCAC+TGG | 0.588860 | 5.2:+59802762 | MS.gene43825:CDS |
| TCCACTTTACGATCGAAAAG+GGG | 0.589163 | 5.2:+59804102 | MS.gene43825:CDS |
| GAGGTTGATGATGAGAAGGA+TGG | 0.591801 | 5.2:+59799210 | MS.gene43825:CDS |
| AGAAATCTTTGGTTGATGCA+TGG | 0.592449 | 5.2:+59802838 | MS.gene43825:CDS |
| ATCTTCAACAAGTATGCTGA+AGG | 0.593115 | 5.2:+59799132 | MS.gene43825:CDS |
| AAGATCTCCCTGACTTCCTG+AGG | 0.594500 | 5.2:-59799114 | None:intergenic |
| ATTACCTTAGATCTAATAGG+AGG | 0.596374 | 5.2:-59799354 | None:intergenic |
| TGATACACAGAAGGTGGTGG+AGG | 0.598642 | 5.2:+59799236 | MS.gene43825:CDS |
| GGGTGAGGTTGATGATGAGA+AGG | 0.600028 | 5.2:+59799206 | MS.gene43825:CDS |
| CAACAAGTATGCTGAAGGTG+GGG | 0.607568 | 5.2:+59799137 | MS.gene43825:CDS |
| CGATCACTGAACTAAAACAA+GGG | 0.607895 | 5.2:+59804068 | MS.gene43825:CDS |
| CCATGCATCCAGCCAACCAG+TGG | 0.609115 | 5.2:-59802778 | None:intergenic |
| ATGGTTGCATTCAATATGCA+GGG | 0.610409 | 5.2:+59802808 | MS.gene43825:CDS |
| AGGTGGGGCCCACATGACTC+CGG | 0.610977 | 5.2:+59799152 | MS.gene43825:CDS |
| TATATGAAATAATGGGACAA+TGG | 0.614028 | 5.2:-59800397 | None:intergenic |
| GAATAGGTTAAAATATATGT+GGG | 0.614296 | 5.2:+59803056 | MS.gene43825:intron |
| GAACTGGTCCGGAGTCATGT+GGG | 0.619210 | 5.2:-59799160 | None:intergenic |
| GATTCTGATGAAGATGAATG+GGG | 0.619806 | 5.2:+59801910 | MS.gene43825:CDS |
| ACTTAAATTCCAAAAGTGTG+AGG | 0.622150 | 5.2:+59801851 | MS.gene43825:CDS |
| GGATAACTGGATACCTACTT+GGG | 0.627164 | 5.2:+59803934 | MS.gene43825:CDS |
| ATTCATGCTGGAAAACCTAA+GGG | 0.629230 | 5.2:+59802306 | MS.gene43825:CDS |
| TCGAACTACAAGCCACTGGT+TGG | 0.635611 | 5.2:+59802766 | MS.gene43825:CDS |
| ACTTGATACACAGAAGGTGG+TGG | 0.636561 | 5.2:+59799233 | MS.gene43825:CDS |
| TGACTCCGGACCAGTTCCGG+AGG | 0.644641 | 5.2:+59799166 | MS.gene43825:CDS |
| GGATGGACTTGATACACAGA+AGG | 0.656436 | 5.2:+59799227 | MS.gene43825:CDS |
| TGATGACGATGAAACAAACC+AGG | 0.670092 | 5.2:+59802257 | MS.gene43825:CDS |
| TGGACTTGATACACAGAAGG+TGG | 0.670412 | 5.2:+59799230 | MS.gene43825:CDS |
| CAGTGGCTTGTAGTTCGACG+AGG | 0.682847 | 5.2:-59802761 | None:intergenic |
| GAGTCTGCGTGTGTTTCCGG+CGG | 0.690751 | 5.2:+59799064 | MS.gene43825:CDS |
| TGGAATGTTTAGATCCAATG+GGG | 0.693138 | 5.2:+59802858 | MS.gene43825:CDS |
| GATCGTAAAGTGGAACGGCG+CGG | 0.702580 | 5.2:-59804093 | None:intergenic |
| GCGGAGGTTTAAGTCCGGGG+AGG | 0.705578 | 5.2:+59799083 | MS.gene43825:CDS |
| GGAATGTTTAGATCCAATGG+GGG | 0.738406 | 5.2:+59802859 | MS.gene43825:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TACAATTTGATTTTTTATAA+AGG | - | chr5.2:59800888-59800907 | None:intergenic | 10.0% |
| !!! | ATAAAACGTGTAAATTTTAT+AGG | + | chr5.2:59801605-59801624 | MS.gene43825:intron | 15.0% |
| !!! | TAAAACGTGTAAATTTTATA+GGG | + | chr5.2:59801606-59801625 | MS.gene43825:intron | 15.0% |
| !!! | TACTTTCTATTTTTTTTACA+GGG | + | chr5.2:59802189-59802208 | MS.gene43825:intron | 15.0% |
| !!! | TTACTTTCTATTTTTTTTAC+AGG | + | chr5.2:59802188-59802207 | MS.gene43825:intron | 15.0% |
| !!! | TTGTTTAAATTTTCATCATT+TGG | - | chr5.2:59801769-59801788 | None:intergenic | 15.0% |
| !! | ACCAGTATATATGAAATAAT+GGG | - | chr5.2:59800407-59800426 | None:intergenic | 20.0% |
| !! | ATTAACTTAACATCACTAAT+AGG | - | chr5.2:59800340-59800359 | None:intergenic | 20.0% |
| !! | ATTATTGAATAACTTATCTC+TGG | - | chr5.2:59799543-59799562 | None:intergenic | 20.0% |
| !! | CAAACATATGCATTAAATTA+AGG | - | chr5.2:59800252-59800271 | None:intergenic | 20.0% |
| !! | CAGTCTATTACATATAAAAA+CGG | - | chr5.2:59802051-59802070 | None:intergenic | 20.0% |
| !! | GAATAGGTTAAAATATATGT+GGG | + | chr5.2:59803056-59803075 | MS.gene43825:intron | 20.0% |
| !! | TGAATAGGTTAAAATATATG+TGG | + | chr5.2:59803055-59803074 | MS.gene43825:intron | 20.0% |
| !! | TTAATTTATTCTCACTGAAT+AGG | + | chr5.2:59803040-59803059 | MS.gene43825:intron | 20.0% |
| !! | TTGAAGCTTAAATAACTTTA+AGG | + | chr5.2:59803252-59803271 | MS.gene43825:intron | 20.0% |
| !! | TTGTGAATTGTTTCATAATT+TGG | + | chr5.2:59801132-59801151 | MS.gene43825:intron | 20.0% |
| !!! | AAAACGTGTAAATTTTATAG+GGG | + | chr5.2:59801607-59801626 | MS.gene43825:intron | 20.0% |
| !!! | AAGCATCTTATAAAATTTTC+AGG | - | chr5.2:59802088-59802107 | None:intergenic | 20.0% |
| !!! | AGGAAATTATTTCTCTTTAA+TGG | + | chr5.2:59803272-59803291 | MS.gene43825:intron | 20.0% |
| !!! | AGTTTTGAAGTTAATATGAA+TGG | + | chr5.2:59800100-59800119 | MS.gene43825:intron | 20.0% |
| !!! | ATTGGTAATTTTACTAGTAT+TGG | + | chr5.2:59800193-59800212 | MS.gene43825:intron | 20.0% |
| !!! | GTAATGTTGTTTTAATTCAA+CGG | + | chr5.2:59799394-59799413 | MS.gene43825:intron | 20.0% |
| !!! | TTTATCTTCTTCAACTTTTA+AGG | - | chr5.2:59802346-59802365 | None:intergenic | 20.0% |
| ! | AAAAAGATTACTAGCACAAT+AGG | - | chr5.2:59801223-59801242 | None:intergenic | 25.0% |
| ! | AAACAAAGTGTGTTCAAATA+AGG | + | chr5.2:59799954-59799973 | MS.gene43825:intron | 25.0% |
| ! | AAAGTTATTTAAGCTTCAAG+TGG | - | chr5.2:59803251-59803270 | None:intergenic | 25.0% |
| ! | ATAAAACTCGAGATATTTAC+AGG | - | chr5.2:59801500-59801519 | None:intergenic | 25.0% |
| ! | ATTCAATCCTAAAGATAAGT+TGG | + | chr5.2:59802939-59802958 | MS.gene43825:CDS | 25.0% |
| ! | ATTCATTCAAATGAATCACT+AGG | - | chr5.2:59803449-59803468 | None:intergenic | 25.0% |
| ! | CTATTCAATGCCTTTATAAT+GGG | - | chr5.2:59800481-59800500 | None:intergenic | 25.0% |
| ! | GACATTATCTTGTAAAATAG+AGG | - | chr5.2:59802015-59802034 | None:intergenic | 25.0% |
| ! | GACCAGTATATATGAAATAA+TGG | - | chr5.2:59800408-59800427 | None:intergenic | 25.0% |
| ! | GCAGTTATATTGTAAATCAA+AGG | - | chr5.2:59803181-59803200 | None:intergenic | 25.0% |
| ! | GTTAATTTCTGTTCTAATTC+AGG | + | chr5.2:59800354-59800373 | MS.gene43825:intron | 25.0% |
| ! | GTTGTTGAAATCAAAATCAA+AGG | + | chr5.2:59801888-59801907 | MS.gene43825:CDS | 25.0% |
| ! | TAAAAAAAGACCGTTTGAAT+TGG | - | chr5.2:59802171-59802190 | None:intergenic | 25.0% |
| ! | TAAAACAAGAACATCATCTT+TGG | - | chr5.2:59800545-59800564 | None:intergenic | 25.0% |
| ! | TAAATAGAAAAAACTTACCC+TGG | - | chr5.2:59803147-59803166 | None:intergenic | 25.0% |
| ! | TACATTACCTTAGATCTAAT+AGG | - | chr5.2:59799360-59799379 | None:intergenic | 25.0% |
| ! | TAGATGATTACTCAAACATT+TGG | + | chr5.2:59801727-59801746 | MS.gene43825:intron | 25.0% |
| ! | TATATTTCAATAAACCTCGA+AGG | + | chr5.2:59803687-59803706 | MS.gene43825:intron | 25.0% |
| ! | TATATTTCTTTCTCAAGTGT+TGG | + | chr5.2:59799443-59799462 | MS.gene43825:intron | 25.0% |
| ! | TATTGTGTATCACAAAACAA+TGG | - | chr5.2:59799921-59799940 | None:intergenic | 25.0% |
| ! | TCATGCAAATTAAGTAAACT+TGG | - | chr5.2:59800283-59800302 | None:intergenic | 25.0% |
| ! | TCCCATTATTTCATATATAC+TGG | + | chr5.2:59800403-59800422 | MS.gene43825:CDS | 25.0% |
| ! | TCTATTCAATGCCTTTATAA+TGG | - | chr5.2:59800482-59800501 | None:intergenic | 25.0% |
| ! | TTAGAATGTAGAAGAGTTTA+AGG | - | chr5.2:59802663-59802682 | None:intergenic | 25.0% |
| ! | TTCAAATAAGCCAATTCAAA+CGG | + | chr5.2:59802158-59802177 | MS.gene43825:intron | 25.0% |
| ! | TTGAAGTTAATATGAATGGA+AGG | + | chr5.2:59800104-59800123 | MS.gene43825:intron | 25.0% |
| !! | ACTAGGTAAACTTAAGTTTT+CGG | - | chr5.2:59803432-59803451 | None:intergenic | 25.0% |
| !! | ATATCCTCAAAAAGTTTTTC+TGG | - | chr5.2:59802720-59802739 | None:intergenic | 25.0% |
| !! | CAAATGTTTGAAATCCATTA+AGG | + | chr5.2:59801354-59801373 | MS.gene43825:CDS | 25.0% |
| !! | TATATGAAATAATGGGACAA+TGG | - | chr5.2:59800400-59800419 | None:intergenic | 25.0% |
| !! | TATCCTCAAAAAGTTTTTCT+GGG | - | chr5.2:59802719-59802738 | None:intergenic | 25.0% |
| !! | TGCTTTCTATTTTGTATGAT+AGG | + | chr5.2:59802689-59802708 | MS.gene43825:intron | 25.0% |
| !! | TTGGAATTTAAGTACTCTTT+TGG | - | chr5.2:59801844-59801863 | None:intergenic | 25.0% |
| !! | TTTACTAGTATTGGATGAAA+AGG | + | chr5.2:59800202-59800221 | MS.gene43825:intron | 25.0% |
| !! | TTTTGCTTATATTCTACTTG+TGG | + | chr5.2:59801288-59801307 | MS.gene43825:intron | 25.0% |
| !!! | AATCGTTTGTTATATCTGAA+AGG | + | chr5.2:59801644-59801663 | MS.gene43825:intron | 25.0% |
| !!! | ATTATAAAGGCATTGAATAG+AGG | + | chr5.2:59800481-59800500 | MS.gene43825:CDS | 25.0% |
| !!! | CACTTTTAAGAAGTACATTA+GGG | - | chr5.2:59799808-59799827 | None:intergenic | 25.0% |
| !!! | CTTCTAAACTGCTTTAAAAA+CGG | - | chr5.2:59800628-59800647 | None:intergenic | 25.0% |
| !!! | CTTTGATTTTACATTTTTGC+TGG | + | chr5.2:59801243-59801262 | MS.gene43825:intron | 25.0% |
| !!! | CTTTTAGAGTACATTTCTTA+AGG | + | chr5.2:59803322-59803341 | MS.gene43825:intron | 25.0% |
| !!! | GTTTACTTAATTTGCATGAA+TGG | + | chr5.2:59800284-59800303 | MS.gene43825:intron | 25.0% |
| !!! | TCTTTTGCTTTTTCTTTGAT+TGG | + | chr5.2:59800175-59800194 | MS.gene43825:intron | 25.0% |
| !!! | TGAAAAGGACAAGTTTTTTT+AGG | + | chr5.2:59800217-59800236 | MS.gene43825:intron | 25.0% |
| !!! | TGTTTCATAATTTGGTTCTT+TGG | + | chr5.2:59801140-59801159 | MS.gene43825:intron | 25.0% |
| !!! | TTGTTTTGTGATACACAATA+CGG | + | chr5.2:59799921-59799940 | MS.gene43825:intron | 25.0% |
| AAACATTTGATCAAATCGAC+AGG | - | chr5.2:59801343-59801362 | None:intergenic | 30.0% | |
| AAACTGAACTGAACAATGAA+TGG | + | chr5.2:59800792-59800811 | MS.gene43825:intron | 30.0% | |
| AACTTGTAGAGACATAAAAG+TGG | + | chr5.2:59801567-59801586 | MS.gene43825:intron | 30.0% | |
| AAGTTAATATGAATGGAAGG+TGG | + | chr5.2:59800107-59800126 | MS.gene43825:intron | 30.0% | |
| AGACTCATATCAATTGAGTT+AGG | + | chr5.2:59803553-59803572 | MS.gene43825:intron | 30.0% | |
| AGATTGTTTGAAAGAGCTTT+CGG | - | chr5.2:59802111-59802130 | None:intergenic | 30.0% | |
| AGTTAATATGAATGGAAGGT+GGG | + | chr5.2:59800108-59800127 | MS.gene43825:intron | 30.0% | |
| ATGGAATGTTTAGATCCAAT+GGG | + | chr5.2:59802857-59802876 | MS.gene43825:CDS | 30.0% | |
| ATTACCTTAGATCTAATAGG+AGG | - | chr5.2:59799357-59799376 | None:intergenic | 30.0% | |
| ATTATAGTAGTGTAACGTAG+CGG | + | chr5.2:59799987-59800006 | MS.gene43825:intron | 30.0% | |
| CCTAATGTACTTCTTAAAAG+TGG | + | chr5.2:59799806-59799825 | MS.gene43825:intron | 30.0% | |
| GAAGAAAACAAAGACAATAG+AGG | + | chr5.2:59803913-59803932 | MS.gene43825:CDS | 30.0% | |
| GGACAGTTGTAAAATACTAT+TGG | - | chr5.2:59802499-59802518 | None:intergenic | 30.0% | |
| GGATTGAATACCTCATTATT+TGG | - | chr5.2:59802928-59802947 | None:intergenic | 30.0% | |
| GTAGATCACGTGTATATTTA+AGG | - | chr5.2:59802622-59802641 | None:intergenic | 30.0% | |
| GTGATTCATTTGAATGAATC+AGG | + | chr5.2:59803450-59803469 | MS.gene43825:intron | 30.0% | |
| GTTAAAATATATGTGGGAGA+TGG | + | chr5.2:59803062-59803081 | MS.gene43825:CDS | 30.0% | |
| GTTCAATTTAGTCCATGAAT+TGG | - | chr5.2:59801088-59801107 | None:intergenic | 30.0% | |
| TACAGTTCCATTCAGTTTAA+CGG | + | chr5.2:59801165-59801184 | MS.gene43825:intron | 30.0% | |
| TAGAAGAGTTTAAGGAAAAG+TGG | - | chr5.2:59802655-59802674 | None:intergenic | 30.0% | |
| TAGTGATGTTCCCATTATAA+AGG | + | chr5.2:59800468-59800487 | MS.gene43825:CDS | 30.0% | |
| TGCACAAAATGAAGATGATA+AGG | + | chr5.2:59801957-59801976 | MS.gene43825:CDS | 30.0% | |
| TTCACAAAGGAAAAACAGTT+TGG | - | chr5.2:59800940-59800959 | None:intergenic | 30.0% | |
| TTCACTTCCAACTTATCTTT+AGG | - | chr5.2:59802949-59802968 | None:intergenic | 30.0% | |
| TTCATAAGCTCTTGCAAAAA+TGG | - | chr5.2:59803629-59803648 | None:intergenic | 30.0% | |
| TTGATTCATCATCATCATTC+TGG | - | chr5.2:59802233-59802252 | None:intergenic | 30.0% | |
| TTGGATTATGTTTGTCTCAA+GGG | + | chr5.2:59799487-59799506 | MS.gene43825:intron | 30.0% | |
| ! | ACTTAAATTCCAAAAGTGTG+AGG | + | chr5.2:59801851-59801870 | MS.gene43825:CDS | 30.0% |
| ! | CTTAAATTCCAAAAGTGTGA+GGG | + | chr5.2:59801852-59801871 | MS.gene43825:CDS | 30.0% |
| ! | GAATTTAAGTACTCTTTTGG+AGG | - | chr5.2:59801841-59801860 | None:intergenic | 30.0% |
| !! | CCACTTTTAAGAAGTACATT+AGG | - | chr5.2:59799809-59799828 | None:intergenic | 30.0% |
| !! | GTTTTACTGAACTGTTTTAG+TGG | - | chr5.2:59800776-59800795 | None:intergenic | 30.0% |
| !! | TAATTCAACGGTTTGACTTT+TGG | + | chr5.2:59799406-59799425 | MS.gene43825:intron | 30.0% |
| !! | TATTGCGCAATAACTGATTT+TGG | + | chr5.2:59800999-59801018 | MS.gene43825:intron | 30.0% |
| !! | TTTTTGAGGATATATCCGAA+AGG | + | chr5.2:59802727-59802746 | MS.gene43825:CDS | 30.0% |
| !!! | ACTCAGGTTCACAAATTTTT+TGG | + | chr5.2:59801675-59801694 | MS.gene43825:intron | 30.0% |
| !!! | ATGTTCTTGTTTTACATGGA+AGG | + | chr5.2:59800551-59800570 | MS.gene43825:CDS | 30.0% |
| !!! | CAATTTGGTTTTGTTCAGTT+CGG | - | chr5.2:59801060-59801079 | None:intergenic | 30.0% |
| !!! | GACAAGTTTTTTTAGGCAAA+GGG | + | chr5.2:59800224-59800243 | MS.gene43825:intron | 30.0% |
| !!! | GATGATGTTCTTGTTTTACA+TGG | + | chr5.2:59800547-59800566 | MS.gene43825:CDS | 30.0% |
| !!! | TCTTTGTTTTCAAACAGAAC+TGG | + | chr5.2:59800857-59800876 | MS.gene43825:intron | 30.0% |
| AAAACCTAAGGGTAGTTTGA+AGG | + | chr5.2:59802317-59802336 | MS.gene43825:CDS | 35.0% | |
| AAATATATGTGGGAGATGGA+TGG | + | chr5.2:59803066-59803085 | MS.gene43825:CDS | 35.0% | |
| AACAAAGTTCTCTTCTGCTT+TGG | + | chr5.2:59800700-59800719 | MS.gene43825:intron | 35.0% | |
| AACAAGAACATCATCTTTGG+TGG | - | chr5.2:59800542-59800561 | None:intergenic | 35.0% | |
| AACAGAACCGTTAAACTGAA+TGG | - | chr5.2:59801175-59801194 | None:intergenic | 35.0% | |
| AACATCATCTTTGGTGGAAT+TGG | - | chr5.2:59800536-59800555 | None:intergenic | 35.0% | |
| AAGAGTTATTACGACTGGAT+AGG | - | chr5.2:59801401-59801420 | None:intergenic | 35.0% | |
| AAGTGAACAAGCTCTTGAAA+AGG | + | chr5.2:59802383-59802402 | MS.gene43825:CDS | 35.0% | |
| AAGTTTCTGTATCCTCTTTG+AGG | + | chr5.2:59801523-59801542 | MS.gene43825:intron | 35.0% | |
| AATGGTTGCATTCAATATGC+AGG | + | chr5.2:59802807-59802826 | MS.gene43825:CDS | 35.0% | |
| ACATCATCTTTGGTGGAATT+GGG | - | chr5.2:59800535-59800554 | None:intergenic | 35.0% | |
| ACTACCATGAACTTCTACTT+AGG | - | chr5.2:59799613-59799632 | None:intergenic | 35.0% | |
| AGAGTTATTACGACTGGATA+GGG | - | chr5.2:59801400-59801419 | None:intergenic | 35.0% | |
| AGCTTACATGTGAATTTGTG+TGG | + | chr5.2:59803852-59803871 | MS.gene43825:intron | 35.0% | |
| AGGATTCATCATAACGAATC+GGG | + | chr5.2:59803490-59803509 | MS.gene43825:intron | 35.0% | |
| AGGATTCTGATGAAGATGAA+TGG | + | chr5.2:59801908-59801927 | MS.gene43825:CDS | 35.0% | |
| AGGGATATGGTAGAAATCTT+TGG | + | chr5.2:59802827-59802846 | MS.gene43825:CDS | 35.0% | |
| ATACATACGTGTGTAAAGTG+AGG | + | chr5.2:59803379-59803398 | MS.gene43825:intron | 35.0% | |
| ATCCTATACTTCAGTTCTTC+AGG | - | chr5.2:59801802-59801821 | None:intergenic | 35.0% | |
| ATCTTCAACAAGTATGCTGA+AGG | + | chr5.2:59799132-59799151 | MS.gene43825:CDS | 35.0% | |
| ATGCAATCGTTGAAAGAACA+TGG | - | chr5.2:59803758-59803777 | None:intergenic | 35.0% | |
| ATGGTTGCATTCAATATGCA+GGG | + | chr5.2:59802808-59802827 | MS.gene43825:CDS | 35.0% | |
| ATTATGTTTGTCTCAAGGGT+TGG | + | chr5.2:59799491-59799510 | MS.gene43825:intron | 35.0% | |
| ATTCATGCTGGAAAACCTAA+GGG | + | chr5.2:59802306-59802325 | MS.gene43825:CDS | 35.0% | |
| CAAAGACAATAGAGGATAAC+TGG | + | chr5.2:59803921-59803940 | MS.gene43825:CDS | 35.0% | |
| CAAGTTCAGGGATAGTTAAA+GGG | - | chr5.2:59803976-59803995 | None:intergenic | 35.0% | |
| CAATCCTCCTATTAGATCTA+AGG | + | chr5.2:59799350-59799369 | MS.gene43825:CDS | 35.0% | |
| CACTTCACTATAGCTACTAT+TGG | - | chr5.2:59799889-59799908 | None:intergenic | 35.0% | |
| CAGGATTCATCATAACGAAT+CGG | + | chr5.2:59803489-59803508 | MS.gene43825:intron | 35.0% | |
| CATGGAATGTTTAGATCCAA+TGG | + | chr5.2:59802856-59802875 | MS.gene43825:CDS | 35.0% | |
| CCAGACTTTCTTATGAATGT+AGG | + | chr5.2:59802901-59802920 | MS.gene43825:CDS | 35.0% | |
| CCTACATTCATAAGAAAGTC+TGG | - | chr5.2:59802904-59802923 | None:intergenic | 35.0% | |
| CCTATCAACACATTGCAAAA+TGG | + | chr5.2:59800588-59800607 | MS.gene43825:intron | 35.0% | |
| CGATCACTGAACTAAAACAA+GGG | + | chr5.2:59804068-59804087 | MS.gene43825:CDS | 35.0% | |
| CTATAGCTACTATTGGTCAA+TGG | - | chr5.2:59799882-59799901 | None:intergenic | 35.0% | |
| CTGCTCAGGTAATTTCTTAT+AGG | + | chr5.2:59801455-59801474 | MS.gene43825:intron | 35.0% | |
| GAATGTAGGTCCAAATAATG+AGG | + | chr5.2:59802915-59802934 | MS.gene43825:CDS | 35.0% | |
| GAGTTGTTGAGCTTGATATT+TGG | + | chr5.2:59800509-59800528 | MS.gene43825:CDS | 35.0% | |
| GATTCTGATGAAGATGAATG+GGG | + | chr5.2:59801910-59801929 | MS.gene43825:CDS | 35.0% | |
| GGATTCTGATGAAGATGAAT+GGG | + | chr5.2:59801909-59801928 | MS.gene43825:CDS | 35.0% | |
| GTTGGATTATGTTTGTCTCA+AGG | + | chr5.2:59799486-59799505 | MS.gene43825:intron | 35.0% | |
| TAATATTCGATACGTCCATC+AGG | - | chr5.2:59802585-59802604 | None:intergenic | 35.0% | |
| TATTCATGCTGGAAAACCTA+AGG | + | chr5.2:59802305-59802324 | MS.gene43825:CDS | 35.0% | |
| TCTTCAAAACTATCTTCACC+TGG | - | chr5.2:59800147-59800166 | None:intergenic | 35.0% | |
| TCTTCAAGAGTTATTACGAC+TGG | - | chr5.2:59801406-59801425 | None:intergenic | 35.0% | |
| TCTTCCTAAGTAGAAGTTCA+TGG | + | chr5.2:59799606-59799625 | MS.gene43825:intron | 35.0% | |
| TGAACAATGAATGGTAAGTC+CGG | + | chr5.2:59800801-59800820 | MS.gene43825:intron | 35.0% | |
| TGGAATGTTTAGATCCAATG+GGG | + | chr5.2:59802858-59802877 | MS.gene43825:CDS | 35.0% | |
| TGGTACACAAAGATACAGTT+CGG | - | chr5.2:59800920-59800939 | None:intergenic | 35.0% | |
| TTCATGTAAGTTATCCTTCG+AGG | - | chr5.2:59803704-59803723 | None:intergenic | 35.0% | |
| TTCCACTTTACGATCGAAAA+GGG | + | chr5.2:59804101-59804120 | MS.gene43825:CDS | 35.0% | |
| TTCTTCATTGTTACATCAGC+TGG | - | chr5.2:59803899-59803918 | None:intergenic | 35.0% | |
| ! | AAAAGGTGCAAGATTCACAA+AGG | - | chr5.2:59800953-59800972 | None:intergenic | 35.0% |
| ! | AGAAATCTTTGGTTGATGCA+TGG | + | chr5.2:59802838-59802857 | MS.gene43825:CDS | 35.0% |
| ! | ATGTCATTGTCCTTGCTATA+AGG | + | chr5.2:59799772-59799791 | MS.gene43825:intron | 35.0% |
| ! | ATTTTACAACTGTCCTCAAG+AGG | + | chr5.2:59802504-59802523 | MS.gene43825:intron | 35.0% |
| ! | GAGCTTGTTCACTTAAACTA+AGG | - | chr5.2:59802377-59802396 | None:intergenic | 35.0% |
| ! | TATGTTTCTGTCTCAAGTGT+TGG | + | chr5.2:59799468-59799487 | MS.gene43825:intron | 35.0% |
| ! | TCACCCAGAAAAACTTTTTG+AGG | + | chr5.2:59802713-59802732 | MS.gene43825:CDS | 35.0% |
| ! | TGTTCTAATTCAGGTTCATC+AGG | + | chr5.2:59800363-59800382 | MS.gene43825:intron | 35.0% |
| ! | TTTTCGATCGTAAAGTGGAA+CGG | - | chr5.2:59804101-59804120 | None:intergenic | 35.0% |
| !! | CCATTTTGCAATGTGTTGAT+AGG | - | chr5.2:59800591-59800610 | None:intergenic | 35.0% |
| !!! | CCTTGTTTTAGTTCAGTGAT+CGG | - | chr5.2:59804070-59804089 | None:intergenic | 35.0% |
| !!! | GGACAAGTTTTTTTAGGCAA+AGG | + | chr5.2:59800223-59800242 | MS.gene43825:intron | 35.0% |
| AATGAATGGTAAGTCCGGAA+TGG | + | chr5.2:59800806-59800825 | MS.gene43825:intron | 40.0% | |
| AGCGAATGCATGTTCCTTAA+TGG | - | chr5.2:59801371-59801390 | None:intergenic | 40.0% | |
| AGGATAACTGGATACCTACT+TGG | + | chr5.2:59803933-59803952 | MS.gene43825:CDS | 40.0% | |
| AGTTCGACTTTGCAATCTCA+AGG | - | chr5.2:59802544-59802563 | None:intergenic | 40.0% | |
| CAAAACAGTGTTCTCAATCG+CGG | - | chr5.2:59800042-59800061 | None:intergenic | 40.0% | |
| CAAATTGTGACGCCAATTCA+TGG | + | chr5.2:59801073-59801092 | MS.gene43825:intron | 40.0% | |
| CACCTGAAGAACTGAAGTAT+AGG | + | chr5.2:59801797-59801816 | MS.gene43825:CDS | 40.0% | |
| CATGAATTGGCGTCACAATT+TGG | - | chr5.2:59801075-59801094 | None:intergenic | 40.0% | |
| CCGATCACTGAACTAAAACA+AGG | + | chr5.2:59804067-59804086 | MS.gene43825:CDS | 40.0% | |
| CGTTTACCTAAACAAACCCT+TGG | + | chr5.2:59803816-59803835 | MS.gene43825:intron | 40.0% | |
| CTGAAAGGAGTAAATCACTC+AGG | + | chr5.2:59801659-59801678 | MS.gene43825:intron | 40.0% | |
| CTTACCCTGGCATAAAAATC+TGG | - | chr5.2:59803134-59803153 | None:intergenic | 40.0% | |
| GAACTTCTACTTAGGAAGAG+TGG | - | chr5.2:59799605-59799624 | None:intergenic | 40.0% | |
| GCAAGTTCAGGGATAGTTAA+AGG | - | chr5.2:59803977-59803996 | None:intergenic | 40.0% | |
| GCACGTGTGACATTTCAAAA+AGG | + | chr5.2:59800075-59800094 | MS.gene43825:intron | 40.0% | |
| GCATTCAATATGCAGGGATA+TGG | + | chr5.2:59802814-59802833 | MS.gene43825:CDS | 40.0% | |
| GGAAGTGAAGAAGACTCTTA+AGG | + | chr5.2:59802960-59802979 | MS.gene43825:CDS | 40.0% | |
| GGAATGTTTAGATCCAATGG+GGG | + | chr5.2:59802859-59802878 | MS.gene43825:CDS | 40.0% | |
| GGATAACTGGATACCTACTT+GGG | + | chr5.2:59803934-59803953 | MS.gene43825:CDS | 40.0% | |
| GTCTCAAGGGTTGGATTAAT+TGG | + | chr5.2:59799500-59799519 | MS.gene43825:intron | 40.0% | |
| GTTCCACTTTACGATCGAAA+AGG | + | chr5.2:59804100-59804119 | MS.gene43825:CDS | 40.0% | |
| GTTCGACTTTGCAATCTCAA+GGG | - | chr5.2:59802543-59802562 | None:intergenic | 40.0% | |
| TACATGTGAATTTGTGTGGC+AGG | + | chr5.2:59803856-59803875 | MS.gene43825:intron | 40.0% | |
| TACTTCAGTTCTTCAGGTGA+CGG | - | chr5.2:59801796-59801815 | None:intergenic | 40.0% | |
| TCAACAAGTATGCTGAAGGT+GGG | + | chr5.2:59799136-59799155 | MS.gene43825:CDS | 40.0% | |
| TCCACTTTACGATCGAAAAG+GGG | + | chr5.2:59804102-59804121 | MS.gene43825:CDS | 40.0% | |
| TGAACTTGTCCAGTTCGAAA+AGG | - | chr5.2:59800970-59800989 | None:intergenic | 40.0% | |
| TGAAGAAGACTCTTAAGGTG+AGG | + | chr5.2:59802965-59802984 | MS.gene43825:intron | 40.0% | |
| TGATGAAGATGAATGGGGAA+AGG | + | chr5.2:59801915-59801934 | MS.gene43825:CDS | 40.0% | |
| TGTCAATGTCCTACATTCAC+AGG | - | chr5.2:59801317-59801336 | None:intergenic | 40.0% | |
| TTCAACAAGTATGCTGAAGG+TGG | + | chr5.2:59799135-59799154 | MS.gene43825:CDS | 40.0% | |
| TTCGTAAACCGAACCATGAA+CGG | - | chr5.2:59800727-59800746 | None:intergenic | 40.0% | |
| TTTCGAACTGGACAAGTTCA+AGG | + | chr5.2:59800970-59800989 | MS.gene43825:intron | 40.0% | |
| ! | AAAAGTGTGAGGGAGAATTC+TGG | + | chr5.2:59801862-59801881 | MS.gene43825:CDS | 40.0% |
| ! | AATCTTGCACCTTTTCGAAC+TGG | + | chr5.2:59800958-59800977 | MS.gene43825:intron | 40.0% |
| ! | AGAATTCTCCCTCACACTTT+TGG | - | chr5.2:59801863-59801882 | None:intergenic | 40.0% |
| ! | GAAGTACCAAGGGTTTGTTT+AGG | - | chr5.2:59803825-59803844 | None:intergenic | 40.0% |
| ! | GAGTTGATTTCCAGTGAGAT+AGG | - | chr5.2:59800437-59800456 | None:intergenic | 40.0% |
| ! | GTATCCTCTTTGAGGACTAA+AGG | + | chr5.2:59801531-59801550 | MS.gene43825:intron | 40.0% |
| ! | TCCACCAGATTTTTATGCCA+GGG | + | chr5.2:59803127-59803146 | MS.gene43825:CDS | 40.0% |
| ! | TGATGACGATGAAACAAACC+AGG | + | chr5.2:59802257-59802276 | MS.gene43825:CDS | 40.0% |
| !! | GTCTGAGACAGATGATTTTG+CGG | + | chr5.2:59804030-59804049 | MS.gene43825:CDS | 40.0% |
| !! | TCTGAGACAGATGATTTTGC+GGG | + | chr5.2:59804031-59804050 | MS.gene43825:CDS | 40.0% |
| ACCCTGGCATAAAAATCTGG+TGG | - | chr5.2:59803131-59803150 | None:intergenic | 45.0% | |
| ACGGAATTCAGATCCTCTTG+AGG | - | chr5.2:59802520-59802539 | None:intergenic | 45.0% | |
| ACTCTGAGCAAAGCAAGTTC+AGG | - | chr5.2:59803989-59804008 | None:intergenic | 45.0% | |
| ACTTGATACACAGAAGGTGG+TGG | + | chr5.2:59799233-59799252 | MS.gene43825:CDS | 45.0% | |
| AGGATTCATCACTGTGAGTC+AGG | + | chr5.2:59803470-59803489 | MS.gene43825:intron | 45.0% | |
| ATAGAGTCTGCGTGTGTTTC+CGG | + | chr5.2:59799061-59799080 | MS.gene43825:CDS | 45.0% | |
| CAACAAGTATGCTGAAGGTG+GGG | + | chr5.2:59799137-59799156 | MS.gene43825:CDS | 45.0% | |
| CATGCCTTTAGTCCTCAAAG+AGG | - | chr5.2:59801538-59801557 | None:intergenic | 45.0% | |
| CCCATATACCAGTTCCATTC+CGG | - | chr5.2:59800823-59800842 | None:intergenic | 45.0% | |
| CCGGAATGGAACTGGTATAT+GGG | + | chr5.2:59800820-59800839 | MS.gene43825:intron | 45.0% | |
| CGCTCGGAACTGATCTTATT+AGG | + | chr5.2:59802415-59802434 | MS.gene43825:CDS | 45.0% | |
| CGTCTAATCGCTATTCATGC+TGG | + | chr5.2:59802294-59802313 | MS.gene43825:CDS | 45.0% | |
| CTCTGAGCAAAGCAAGTTCA+GGG | - | chr5.2:59803988-59804007 | None:intergenic | 45.0% | |
| GACTTTGCAATCTCAAGGGA+CGG | - | chr5.2:59802539-59802558 | None:intergenic | 45.0% | |
| GCTTCCTTCAAACTACCCTT+AGG | - | chr5.2:59802324-59802343 | None:intergenic | 45.0% | |
| GGTATATGGGTTTCGTGCAT+TGG | + | chr5.2:59800833-59800852 | MS.gene43825:intron | 45.0% | |
| GGTCATAACTCCTATCTCAC+TGG | + | chr5.2:59800424-59800443 | MS.gene43825:CDS | 45.0% | |
| GTGAACTCTTCTTCCCAAGT+AGG | - | chr5.2:59803950-59803969 | None:intergenic | 45.0% | |
| GTTGACCCAATCAACTGAGT+CGG | + | chr5.2:59799654-59799673 | MS.gene43825:intron | 45.0% | |
| TCCGGAATGGAACTGGTATA+TGG | + | chr5.2:59800819-59800838 | MS.gene43825:intron | 45.0% | |
| TGGACTTGATACACAGAAGG+TGG | + | chr5.2:59799230-59799249 | MS.gene43825:CDS | 45.0% | |
| TGTGAATTTGTGTGGCAGGT+TGG | + | chr5.2:59803860-59803879 | MS.gene43825:intron | 45.0% | |
| TTGTGGTGACCTGTGAATGT+AGG | + | chr5.2:59801305-59801324 | MS.gene43825:intron | 45.0% | |
| TTTAGATCCAATGGGGGATG+TGG | + | chr5.2:59802865-59802884 | MS.gene43825:CDS | 45.0% | |
| ! | AGCTTTTGCTTGAAGGTCTG+AGG | - | chr5.2:59801437-59801456 | None:intergenic | 45.0% |
| ! | CTCCACCAGATTTTTATGCC+AGG | + | chr5.2:59803126-59803145 | MS.gene43825:CDS | 45.0% |
| ! | CTTGAAGGTCTGAGGTAAGA+TGG | - | chr5.2:59801429-59801448 | None:intergenic | 45.0% |
| ! | GGATGGACTTGATACACAGA+AGG | + | chr5.2:59799227-59799246 | MS.gene43825:CDS | 45.0% |
| ! | GGGAGAAGTACAACTCAGTT+AGG | + | chr5.2:59804122-59804141 | MS.gene43825:CDS | 45.0% |
| ! | TCCCCTTTTCGATCGTAAAG+TGG | - | chr5.2:59804106-59804125 | None:intergenic | 45.0% |
| ! | TGAACTTGCTTTGCTCAGAG+TGG | + | chr5.2:59803988-59804007 | MS.gene43825:CDS | 45.0% |
| !! | AGCTCATGCAAGAAGTACCA+AGG | - | chr5.2:59803836-59803855 | None:intergenic | 45.0% |
| !! | GAGGTTGATGATGAGAAGGA+TGG | + | chr5.2:59799210-59799229 | MS.gene43825:CDS | 45.0% |
| !! | GCTCATGCAAGAAGTACCAA+GGG | - | chr5.2:59803835-59803854 | None:intergenic | 45.0% |
| !! | GTTCATGGTTCGGTTTACGA+AGG | + | chr5.2:59800726-59800745 | MS.gene43825:intron | 45.0% |
| !! | AATACTATTATTAATTAAAT+TGG | + | chr5.2:59802471-59802490 | MS.gene43825:intron | 5.0% |
| AAGATCTCCCTGACTTCCTG+AGG | - | chr5.2:59799117-59799136 | None:intergenic | 50.0% | |
| AGGTTTCTCGTGGAGGTTCA+GGG | + | chr5.2:59799186-59799205 | MS.gene43825:CDS | 50.0% | |
| CACATAACCACATCCCCCAT+TGG | - | chr5.2:59802875-59802894 | None:intergenic | 50.0% | |
| CCCAATCAACTGAGTCGGTT+CGG | + | chr5.2:59799659-59799678 | MS.gene43825:intron | 50.0% | |
| CCTTCAAGCAAAAGCTGCTC+AGG | + | chr5.2:59801441-59801460 | MS.gene43825:CDS | 50.0% | |
| CTGGATGCATGGTGCTCAAA+TGG | + | chr5.2:59802789-59802808 | MS.gene43825:CDS | 50.0% | |
| GACGCTTATACTCACTCTCC+TGG | - | chr5.2:59802278-59802297 | None:intergenic | 50.0% | |
| GAGGTGACACGTGTACCTTT+CGG | - | chr5.2:59802745-59802764 | None:intergenic | 50.0% | |
| GTGGGATTGAACAATGCACC+AGG | + | chr5.2:59800126-59800145 | MS.gene43825:intron | 50.0% | |
| TCCTCGACGTCCTTATAGCA+AGG | - | chr5.2:59799785-59799804 | None:intergenic | 50.0% | |
| TCGAACTACAAGCCACTGGT+TGG | + | chr5.2:59802766-59802785 | MS.gene43825:CDS | 50.0% | |
| TGGTAAGTCCGGAATGGAAC+TGG | + | chr5.2:59800812-59800831 | MS.gene43825:intron | 50.0% | |
| TGTGGGAGATGGATGGAGTA+TGG | + | chr5.2:59803073-59803092 | MS.gene43825:CDS | 50.0% | |
| ! | CCGAACCGACTCAGTTGATT+GGG | - | chr5.2:59799662-59799681 | None:intergenic | 50.0% |
| ! | CCTGAGCAGCTTTTGCTTGA+AGG | - | chr5.2:59801444-59801463 | None:intergenic | 50.0% |
| ! | CTTCTGCTTTGGACCGTTCA+TGG | + | chr5.2:59800711-59800730 | MS.gene43825:intron | 50.0% |
| ! | GCTTTGGACCGTTCATGGTT+CGG | + | chr5.2:59800716-59800735 | MS.gene43825:intron | 50.0% |
| ! | GTGTTCTCAATCGCGGATTG+TGG | - | chr5.2:59800035-59800054 | None:intergenic | 50.0% |
| ! | TCCTTGCTATAAGGACGTCG+AGG | + | chr5.2:59799781-59799800 | MS.gene43825:intron | 50.0% |
| ! | TGATACACAGAAGGTGGTGG+AGG | + | chr5.2:59799236-59799255 | MS.gene43825:CDS | 50.0% |
| !! | GGGTGAGGTTGATGATGAGA+AGG | + | chr5.2:59799206-59799225 | MS.gene43825:CDS | 50.0% |
| !! | TGGAGGAAGTGTTGCAGAAG+CGG | + | chr5.2:59799253-59799272 | MS.gene43825:CDS | 50.0% |
| ACATGACTCCGGACCAGTTC+CGG | + | chr5.2:59799163-59799182 | MS.gene43825:CDS | 55.0% | |
| AGAAACCTCCGGAACTGGTC+CGG | - | chr5.2:59799174-59799193 | None:intergenic | 55.0% | |
| AGTGGCACCTCAGGAAGTCA+GGG | + | chr5.2:59799107-59799126 | MS.gene43825:CDS | 55.0% | |
| CTCGTCGAACTACAAGCCAC+TGG | + | chr5.2:59802762-59802781 | MS.gene43825:CDS | 55.0% | |
| GAAAAGGCTGCTGAGTCGCT+CGG | + | chr5.2:59802399-59802418 | MS.gene43825:CDS | 55.0% | |
| GAACCTCCACGAGAAACCTC+CGG | - | chr5.2:59799185-59799204 | None:intergenic | 55.0% | |
| GAACTGGTCCGGAGTCATGT+GGG | - | chr5.2:59799163-59799182 | None:intergenic | 55.0% | |
| GAGGTTTCTCGTGGAGGTTC+AGG | + | chr5.2:59799185-59799204 | MS.gene43825:CDS | 55.0% | |
| GATCGTAAAGTGGAACGGCG+CGG | - | chr5.2:59804096-59804115 | None:intergenic | 55.0% | |
| GCTACTGAGCTGACACCTGA+TGG | + | chr5.2:59802567-59802586 | MS.gene43825:intron | 55.0% | |
| TCAGGTGTCAGCTCAGTAGC+AGG | - | chr5.2:59802567-59802586 | None:intergenic | 55.0% | |
| TTCCGGCGGAGGTTTAAGTC+CGG | + | chr5.2:59799078-59799097 | MS.gene43825:CDS | 55.0% | |
| ! | ACTACAAGCCACTGGTTGGC+TGG | + | chr5.2:59802770-59802789 | MS.gene43825:CDS | 55.0% |
| ! | CAGTGGCTTGTAGTTCGACG+AGG | - | chr5.2:59802764-59802783 | None:intergenic | 55.0% |
| ! | GCCGAACCGACTCAGTTGAT+TGG | - | chr5.2:59799663-59799682 | None:intergenic | 55.0% |
| CAGTGGCACCTCAGGAAGTC+AGG | + | chr5.2:59799106-59799125 | MS.gene43825:CDS | 60.0% | |
| CCACGAGAAACCTCCGGAAC+TGG | - | chr5.2:59799179-59799198 | None:intergenic | 60.0% | |
| CCAGTTCCGGAGGTTTCTCG+TGG | + | chr5.2:59799176-59799195 | MS.gene43825:CDS | 60.0% | |
| CCATGCATCCAGCCAACCAG+TGG | - | chr5.2:59802781-59802800 | None:intergenic | 60.0% | |
| GAGTCTGCGTGTGTTTCCGG+CGG | + | chr5.2:59799064-59799083 | MS.gene43825:CDS | 60.0% | |
| GGAACTGGTCCGGAGTCATG+TGG | - | chr5.2:59799164-59799183 | None:intergenic | 60.0% | |
| GTTCCGGAGGTTTCTCGTGG+AGG | + | chr5.2:59799179-59799198 | MS.gene43825:CDS | 60.0% | |
| GTTTAAGTCCGGGGAGGCAG+TGG | + | chr5.2:59799089-59799108 | MS.gene43825:CDS | 60.0% | |
| TCCGGCGGAGGTTTAAGTCC+GGG | + | chr5.2:59799079-59799098 | MS.gene43825:CDS | 60.0% | |
| TCTCGTGGAGGTTCAGGGTG+AGG | + | chr5.2:59799191-59799210 | MS.gene43825:CDS | 60.0% | |
| ! | CCACTGGTTGGCTGGATGCA+TGG | + | chr5.2:59802778-59802797 | MS.gene43825:CDS | 60.0% |
| ! | GTGTGGCAGGTTGGCATAGC+TGG | + | chr5.2:59803869-59803888 | MS.gene43825:intron | 60.0% |
| AGGTGGGGCCCACATGACTC+CGG | + | chr5.2:59799152-59799171 | MS.gene43825:CDS | 65.0% | |
| CCCCGGACTTAAACCTCCGC+CGG | - | chr5.2:59799083-59799102 | None:intergenic | 65.0% | |
| CCGGCGGAGGTTTAAGTCCG+GGG | + | chr5.2:59799080-59799099 | MS.gene43825:CDS | 65.0% | |
| GCGGAGGTTTAAGTCCGGGG+AGG | + | chr5.2:59799083-59799102 | MS.gene43825:CDS | 65.0% | |
| TCTGCGTGTGTTTCCGGCGG+AGG | + | chr5.2:59799067-59799086 | MS.gene43825:CDS | 65.0% | |
| TGACTCCGGACCAGTTCCGG+AGG | + | chr5.2:59799166-59799185 | MS.gene43825:CDS | 65.0% | |
| !! | CTGAGGTGCCACTGCCTCCC+CGG | - | chr5.2:59799100-59799119 | None:intergenic | 70.0% |
| CGGGGAGGCAGTGGCACCTC+AGG | + | chr5.2:59799098-59799117 | MS.gene43825:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 59799051 | 59804171 | 59799051 | ID=MS.gene43825 |
| chr5.2 | mRNA | 59799051 | 59804171 | 59799051 | ID=MS.gene43825.t1;Parent=MS.gene43825 |
| chr5.2 | exon | 59799051 | 59799371 | 59799051 | ID=MS.gene43825.t1.exon1;Parent=MS.gene43825.t1 |
| chr5.2 | CDS | 59799051 | 59799371 | 59799051 | ID=cds.MS.gene43825.t1;Parent=MS.gene43825.t1 |
| chr5.2 | exon | 59800376 | 59800572 | 59800376 | ID=MS.gene43825.t1.exon2;Parent=MS.gene43825.t1 |
| chr5.2 | CDS | 59800376 | 59800572 | 59800376 | ID=cds.MS.gene43825.t1;Parent=MS.gene43825.t1 |
| chr5.2 | exon | 59801327 | 59801462 | 59801327 | ID=MS.gene43825.t1.exon3;Parent=MS.gene43825.t1 |
| chr5.2 | CDS | 59801327 | 59801462 | 59801327 | ID=cds.MS.gene43825.t1;Parent=MS.gene43825.t1 |
| chr5.2 | exon | 59801730 | 59801978 | 59801730 | ID=MS.gene43825.t1.exon4;Parent=MS.gene43825.t1 |
| chr5.2 | CDS | 59801730 | 59801978 | 59801730 | ID=cds.MS.gene43825.t1;Parent=MS.gene43825.t1 |
| chr5.2 | exon | 59802210 | 59802436 | 59802210 | ID=MS.gene43825.t1.exon5;Parent=MS.gene43825.t1 |
| chr5.2 | CDS | 59802210 | 59802436 | 59802210 | ID=cds.MS.gene43825.t1;Parent=MS.gene43825.t1 |
| chr5.2 | exon | 59802711 | 59802981 | 59802711 | ID=MS.gene43825.t1.exon6;Parent=MS.gene43825.t1 |
| chr5.2 | CDS | 59802711 | 59802981 | 59802711 | ID=cds.MS.gene43825.t1;Parent=MS.gene43825.t1 |
| chr5.2 | exon | 59803062 | 59803148 | 59803062 | ID=MS.gene43825.t1.exon7;Parent=MS.gene43825.t1 |
| chr5.2 | CDS | 59803062 | 59803148 | 59803062 | ID=cds.MS.gene43825.t1;Parent=MS.gene43825.t1 |
| chr5.2 | exon | 59803878 | 59804171 | 59803878 | ID=MS.gene43825.t1.exon8;Parent=MS.gene43825.t1 |
| chr5.2 | CDS | 59803878 | 59804171 | 59803878 | ID=cds.MS.gene43825.t1;Parent=MS.gene43825.t1 |
| Gene Sequence |
| Protein sequence |
