AlfalfaGEDB | MS.gene44238

M. sativa cultivar XinJiangDaYe / MS.gene44238

KEGG: -
GO: -
PFAM: PF00314.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene44238.t1	XP_004509365.1	86.6	246	32	1	1	246	1	245	5.90E-115	423.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene44238.t1	A0A1P8B554	60.0	255	88	6	7	248	7	260	2.6e-79	296.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene44238.t1	A0A1S2YSV9	86.6	246	32	1	1	246	1	245	4.3e-115	423.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049171	MS.gene44238	-0.812054	5.14E-51	-1.69E-46
MS.gene049217	MS.gene44238	-0.810094	1.37E-50	-1.69E-46
MS.gene049222	MS.gene44238	-0.80948	1.85E-50	-1.69E-46
MS.gene049285	MS.gene44238	-0.803585	3.25E-49	-1.69E-46
MS.gene050333	MS.gene44238	-0.823281	1.51E-53	-1.69E-46
MS.gene050504	MS.gene44238	-0.80171	7.92E-49	-1.69E-46
MS.gene050612	MS.gene44238	-0.808008	3.83E-50	-1.69E-46
MS.gene050747	MS.gene44238	-0.813077	3.07E-51	-1.69E-46
MS.gene050772	MS.gene44238	-0.807705	4.44E-50	-1.69E-46
MS.gene05080	MS.gene44238	-0.818255	2.16E-52	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene44238.t1	MTR_8g075510	98.785	247	3	0	1	247	1	247	0.0	502
MS.gene44238.t1	MTR_8g075510	98.394	249	4	0	1	249	1	249	0.0	498
MS.gene44238.t1	MTR_5g022350	71.545	246	69	1	1	246	1	245	2.11e-132	376
MS.gene44238.t1	MTR_4g073720	68.644	236	70	2	11	243	5	239	6.38e-116	335
MS.gene44238.t1	MTR_1g025420	61.694	248	83	6	14	249	6	253	1.38e-99	293
MS.gene44238.t1	MTR_1g025420	62.195	246	83	5	14	249	6	251	1.42e-99	291
MS.gene44238.t1	MTR_3g114030	60.606	231	81	5	28	248	4	234	9.14e-92	270
MS.gene44238.t1	MTR_8g037890	56.800	250	97	6	10	249	4	252	1.16e-91	273
MS.gene44238.t1	MTR_5g022310	55.686	255	97	7	10	249	3	256	2.64e-88	262
MS.gene44238.t1	MTR_8g075550	57.872	235	84	5	28	248	25	258	1.93e-87	262

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene44238.t1	AT4G38660	64.659	249	82	3	1	246	2	247	5.06e-111	323
MS.gene44238.t1	AT4G38660	69.369	222	64	2	31	249	8	228	3.48e-109	318
MS.gene44238.t1	AT4G24180	62.069	261	85	6	1	248	1	260	1.96e-107	311
MS.gene44238.t1	AT4G24180	62.548	259	82	7	1	248	1	255	1.15e-106	309
MS.gene44238.t1	AT4G24180	62.403	258	83	6	1	245	1	257	1.69e-106	310
MS.gene44238.t1	AT4G24180	62.891	256	80	7	1	245	1	252	9.49e-106	308
MS.gene44238.t1	AT4G24180	60.166	241	83	5	1	228	1	241	1.82e-96	285
MS.gene44238.t1	AT4G24180	60.669	239	80	6	1	228	1	236	1.05e-95	283
MS.gene44238.t1	AT1G20030	60.870	230	78	4	28	245	17	246	1.43e-90	270
MS.gene44238.t1	AT1G20030	61.947	226	74	4	32	245	4	229	2.21e-90	269

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Find 75 sgRNAs with CRISPR-Local

Find 84 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCAGACCTCGGAACAAC+CGG	0.464546	8.1:+31655731	MS.gene44238:CDS
AAACCGGTTGTTCCGAGGTC+TGG	0.386392	8.1:-31655734	None:intergenic
AAATTCGACGATTCTGGCCA+CGG	0.552629	8.1:+31655836	MS.gene44238:CDS
AACATTTCCGAATAAACCGA+AGG	0.568030	8.1:-31656193	None:intergenic
AACCGGAGACTGTGGTTCCG+GGG	0.604183	8.1:+31655868	MS.gene44238:CDS
AAGATCCTCTCCACATCCAG+TGG	0.606360	8.1:-31656047	None:intergenic
AATAGCGCGTGTGGTGCCTT+TGG	0.406914	8.1:+31656118	MS.gene44238:CDS
AATCTACCTGACCAACCGGC+TGG	0.593577	8.1:-31655794	None:intergenic
AATTCTGCTAATGTTGCCGG+TGG	0.701173	8.1:-31655920	None:intergenic
ACAAATGTGATCACACAATA+TGG	0.373841	8.1:+31655693	MS.gene44238:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACAAATGTGATCACACAATA+TGG	+	chr8.1:31655693-31655712	MS.gene44238:CDS	30.0%
AACATTTCCGAATAAACCGA+AGG	-	chr8.1:31656196-31656215	None:intergenic	35.0%
AATTGTTACTCCTGCATGTA+TGG	-	chr8.1:31655648-31655667	None:intergenic	35.0%
ACAATTATTCCCATACATGC+AGG	+	chr8.1:31655635-31655654	MS.gene44238:intron	35.0%
ACATTAGCAGAATTCACTCT+AGG	+	chr8.1:31655929-31655948	MS.gene44238:CDS	35.0%
AGACTAACATCGTAGTAATC+TGG	-	chr8.1:31655965-31655984	None:intergenic	35.0%
ATTGTTACTCCTGCATGTAT+GGG	-	chr8.1:31655647-31655666	None:intergenic	35.0%
GAAATTAACTGCAACGGAAA+CGG	+	chr8.1:31655890-31655909	MS.gene44238:CDS	35.0%
ACAATATGGCCAGGAATTCT+AGG	+	chr8.1:31655707-31655726	MS.gene44238:CDS	40.0%
AGAATCGTCGAATTTGCAAC+CGG	-	chr8.1:31655831-31655850	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.1	gene	31655398	31656333	31655398	ID=MS.gene44238
chr8.1	mRNA	31655398	31656333	31655398	ID=MS.gene44238.t1;Parent=MS.gene44238
chr8.1	exon	31655398	31655470	31655398	ID=MS.gene44238.t1.exon1;Parent=MS.gene44238.t1
chr8.1	CDS	31655398	31655470	31655398	ID=cds.MS.gene44238.t1;Parent=MS.gene44238.t1
chr8.1	exon	31655657	31656333	31655657	ID=MS.gene44238.t1.exon2;Parent=MS.gene44238.t1
chr8.1	CDS	31655657	31656333	31655657	ID=cds.MS.gene44238.t1;Parent=MS.gene44238.t1

Gene Sequence

>MS.gene44238

ATGTCTATGTTCTCATATCACAAACATTCTTCTAACCGTTTCTTCATTTTCCTACTTATCCTAGCTTTCAAAGGTATGTATACAATACATATATTTATTTGAGAAGAATTTTCATGCATTGTCAATATTTTTTTTTTTACACTGTCAACCAATCAAAAATCGTCGTTATATTAGAAAATTATTACACCATCAATACATATATGAATTAAATCTTATTTATTTTCAAACTCAATTTTTACAATTATTCCCATACATGCAGGAGTAACAATTTCAGCAACAACATTCACGTTCGTGAACAAATGTGATCACACAATATGGCCAGGAATTCTAGGAAAACCAGACCTCGGAACAACCGGTTTTGAACTCAAAAAAGGAAACACACAAACCTTCCAAGCACCAGCCGGTTGGTCAGGTAGATTCTGGGCAAGAACCGGTTGCAAATTCGACGATTCTGGCCACGGAACCTGCTCAACCGGAGACTGTGGTTCCGGGGAAATTAACTGCAACGGAAACGGCGCAACACCACCGGCAACATTAGCAGAATTCACTCTAGGAAATAGTTCGCCAGATTACTACGATGTTAGTCTTGTAGACGGTTACAATCTTCCGGTGATGGTTGAAACTAGTGGCGGTTCAGGTTCATGTCAGCCCACTGGATGTGGAGAGGATCTTAACCGGAGGTGTCCATCGGAGCTGAGAGTGGACGGTGGTGACGCGTGTAATAGCGCGTGTGGTGCCTTTGGGACACCGGAGTATTGTTGTAGTGGCGCGTTTGGTTCGCCATCGAGTTGTTCGCCTTCGGTTTATTCGGAAATGTTTAAATCCGCTTGTCCAAAATCTTATAGCTATGCGTATGATGATGCTACGAGTACTTTTACTTGTACTGCTGCGGATGATTATACTATCACATTTTGTCCTTCTTCTTCTCGAAGGTAA

Protein sequence

>MS.gene44238.t1

MSMFSYHKHSSNRFFIFLLILAFKGVTISATTFTFVNKCDHTIWPGILGKPDLGTTGFELKKGNTQTFQAPAGWSGRFWARTGCKFDDSGHGTCSTGDCGSGEINCNGNGATPPATLAEFTLGNSSPDYYDVSLVDGYNLPVMVETSGGSGSCQPTGCGEDLNRRCPSELRVDGGDACNSACGAFGTPEYCCSGAFGSPSSCSPSVYSEMFKSACPKSYSYAYDDATSTFTCTAADDYTITFCPSSSRR