Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44435.t1 | XP_013457509.1 | 98.1 | 473 | 9 | 0 | 1 | 473 | 1 | 473 | 2.00E-268 | 934.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44435.t1 | Q00257 | 75.5 | 481 | 104 | 4 | 1 | 473 | 1 | 475 | 2.2e-212 | 739.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44435.t1 | A0A072V097 | 98.1 | 473 | 9 | 0 | 1 | 473 | 1 | 473 | 1.4e-268 | 934.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene44435 | MS.gene006415 | PPI |
| MS.gene44435 | MS.gene20160 | PPI |
| MS.gene44435 | MS.gene006416 | PPI |
| MS.gene44435 | MS.gene55882 | PPI |
| MS.gene44435 | MS.gene20161 | PPI |
| MS.gene44435 | MS.gene049022 | PPI |
| MS.gene44435 | MS.gene55883 | PPI |
| MS.gene44435 | MS.gene06177 | PPI |
| MS.gene44435 | MS.gene75059 | PPI |
| MS.gene44435 | MS.gene06176 | PPI |
| MS.gene064035 | MS.gene44435 | PPI |
| MS.gene66342 | MS.gene44435 | PPI |
| MS.gene44435 | MS.gene049021 | PPI |
| MS.gene030294 | MS.gene44435 | PPI |
| MS.gene44435 | MS.gene66343 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44435.t1 | MTR_4g097540 | 99.366 | 473 | 3 | 0 | 1 | 473 | 1 | 473 | 0.0 | 983 |
| MS.gene44435.t1 | MTR_5g015020 | 83.402 | 482 | 67 | 5 | 1 | 471 | 1 | 480 | 0.0 | 835 |
| MS.gene44435.t1 | MTR_3g103550 | 69.907 | 432 | 123 | 3 | 3 | 433 | 1 | 426 | 0.0 | 657 |
| MS.gene44435.t1 | MTR_8g098930 | 55.876 | 451 | 187 | 4 | 2 | 450 | 10 | 450 | 0.0 | 553 |
| MS.gene44435.t1 | MTR_6g091760 | 59.861 | 431 | 163 | 4 | 4 | 434 | 14 | 434 | 0.0 | 552 |
| MS.gene44435.t1 | MTR_8g101750 | 57.895 | 437 | 166 | 5 | 4 | 439 | 12 | 431 | 0.0 | 534 |
| MS.gene44435.t1 | MTR_8g028600 | 53.759 | 439 | 189 | 3 | 2 | 438 | 9 | 435 | 0.0 | 520 |
| MS.gene44435.t1 | MTR_7g079080 | 53.103 | 435 | 191 | 3 | 2 | 434 | 9 | 432 | 6.78e-178 | 507 |
| MS.gene44435.t1 | MTR_8g101820 | 53.776 | 437 | 171 | 6 | 4 | 439 | 12 | 418 | 1.83e-169 | 484 |
| MS.gene44435.t1 | MTR_6g463260 | 45.517 | 435 | 225 | 5 | 4 | 437 | 104 | 527 | 2.54e-146 | 429 |
| MS.gene44435.t1 | MTR_7g079080 | 52.959 | 338 | 146 | 3 | 99 | 434 | 1 | 327 | 1.04e-134 | 394 |
| MS.gene44435.t1 | MTR_5g011400 | 41.687 | 415 | 232 | 3 | 16 | 430 | 84 | 488 | 2.14e-125 | 374 |
| MS.gene44435.t1 | MTR_2g090730 | 81.720 | 93 | 13 | 1 | 57 | 149 | 12 | 100 | 4.29e-49 | 167 |
| MS.gene44435.t1 | MTR_5g033230 | 25.410 | 244 | 162 | 9 | 24 | 253 | 35 | 272 | 1.90e-14 | 75.9 |
| MS.gene44435.t1 | MTR_5g033230 | 26.966 | 178 | 122 | 6 | 79 | 253 | 100 | 272 | 2.60e-14 | 75.5 |
| MS.gene44435.t1 | MTR_8g023140 | 22.449 | 343 | 235 | 13 | 112 | 433 | 182 | 514 | 4.08e-13 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44435.t1 | AT4G37770 | 71.698 | 477 | 123 | 4 | 1 | 473 | 1 | 469 | 0.0 | 715 |
| MS.gene44435.t1 | AT3G49700 | 74.153 | 472 | 109 | 4 | 1 | 466 | 1 | 465 | 0.0 | 711 |
| MS.gene44435.t1 | AT5G65800 | 73.517 | 472 | 112 | 5 | 1 | 466 | 1 | 465 | 0.0 | 703 |
| MS.gene44435.t1 | AT2G22810 | 69.023 | 481 | 134 | 3 | 1 | 473 | 1 | 474 | 0.0 | 691 |
| MS.gene44435.t1 | AT4G08040 | 66.234 | 462 | 146 | 3 | 3 | 463 | 1 | 453 | 0.0 | 650 |
| MS.gene44435.t1 | AT4G26200 | 58.333 | 432 | 171 | 3 | 4 | 434 | 18 | 441 | 0.0 | 533 |
| MS.gene44435.t1 | AT3G61510 | 54.147 | 434 | 187 | 3 | 2 | 435 | 9 | 430 | 0.0 | 519 |
| MS.gene44435.t1 | AT1G01480 | 51.592 | 471 | 212 | 5 | 3 | 464 | 11 | 474 | 9.13e-180 | 513 |
| MS.gene44435.t1 | AT4G11280 | 53.118 | 433 | 194 | 2 | 1 | 433 | 12 | 435 | 8.68e-177 | 505 |
| MS.gene44435.t1 | AT1G01480 | 51.733 | 375 | 165 | 5 | 99 | 464 | 1 | 368 | 1.35e-140 | 409 |
| MS.gene44435.t1 | AT5G51690 | 43.590 | 429 | 231 | 4 | 4 | 431 | 69 | 487 | 3.41e-139 | 409 |
| MS.gene44435.t1 | AT1G62960 | 42.227 | 431 | 231 | 8 | 4 | 431 | 132 | 547 | 6.11e-126 | 377 |
| MS.gene44435.t1 | AT5G51690 | 42.932 | 382 | 200 | 4 | 50 | 431 | 1 | 364 | 8.92e-121 | 358 |
| MS.gene44435.t1 | AT1G23310 | 23.868 | 243 | 167 | 8 | 24 | 253 | 35 | 272 | 7.03e-15 | 77.0 |
| MS.gene44435.t1 | AT1G23310 | 23.868 | 243 | 167 | 8 | 24 | 253 | 35 | 272 | 1.28e-14 | 76.3 |
| MS.gene44435.t1 | AT1G70580 | 23.457 | 243 | 168 | 8 | 24 | 253 | 35 | 272 | 3.55e-14 | 75.1 |
| MS.gene44435.t1 | AT1G70580 | 23.457 | 243 | 168 | 8 | 24 | 253 | 35 | 272 | 3.55e-14 | 75.1 |
| MS.gene44435.t1 | AT1G70580 | 23.457 | 243 | 168 | 8 | 24 | 253 | 35 | 272 | 3.55e-14 | 75.1 |
| MS.gene44435.t1 | AT1G70580 | 23.457 | 243 | 168 | 8 | 24 | 253 | 35 | 272 | 3.55e-14 | 75.1 |
| MS.gene44435.t1 | AT2G22250 | 22.222 | 270 | 182 | 7 | 105 | 369 | 106 | 352 | 5.04e-13 | 71.2 |
| MS.gene44435.t1 | AT1G77670 | 24.267 | 375 | 237 | 16 | 71 | 431 | 92 | 433 | 1.06e-12 | 70.1 |
| MS.gene44435.t1 | AT2G24850 | 23.724 | 333 | 211 | 12 | 114 | 433 | 117 | 419 | 1.13e-11 | 67.0 |
| MS.gene44435.t1 | AT2G20610 | 22.778 | 360 | 229 | 13 | 88 | 433 | 111 | 435 | 3.33e-11 | 65.9 |
| MS.gene44435.t1 | AT4G23600 | 23.118 | 372 | 244 | 13 | 87 | 444 | 78 | 421 | 4.17e-11 | 65.1 |
Find 91 sgRNAs with CRISPR-Local
Find 110 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATTACTCCTTTGACTTTA+AGG | 0.007055 | 8.1:+24985992 | None:intergenic |
| CGTCAGAACAAGCTTGTTTC+GGG | 0.214801 | 8.1:-24985535 | MS.gene44435:CDS |
| CAAGACTCTTCATACTTCTT+AGG | 0.254225 | 8.1:-24986739 | MS.gene44435:CDS |
| GAGAGCAAGTTCACGGAATA+TGG | 0.287004 | 8.1:+24986451 | None:intergenic |
| TCCATGACGCTGATGAAGTT+TGG | 0.292320 | 8.1:+24985835 | None:intergenic |
| GTTACTTACCCTGGATAATA+AGG | 0.296953 | 8.1:+24986245 | None:intergenic |
| ACCTGGCAAACCCAAGTCTT+TGG | 0.309354 | 8.1:+24985729 | None:intergenic |
| CAACACATTTGAAGCTGAAA+TGG | 0.312708 | 8.1:-24985431 | MS.gene44435:CDS |
| ACGTCAGAACAAGCTTGTTT+CGG | 0.332943 | 8.1:-24985536 | MS.gene44435:CDS |
| ACAAGCATTGGTAGATTTCA+TGG | 0.337094 | 8.1:-24986396 | MS.gene44435:CDS |
| GCTTTCCAAGCAGCTAATTC+CGG | 0.349870 | 8.1:+24985501 | None:intergenic |
| CCCATTTGAATAATTCCTTT+AGG | 0.350296 | 8.1:+24986673 | None:intergenic |
| TTCGGTTACTTGAAAGTTGT+TGG | 0.352316 | 8.1:+24986056 | None:intergenic |
| CTTCCTACTCCTTATTATCC+AGG | 0.362035 | 8.1:-24986254 | MS.gene44435:CDS |
| GAGTCCACTGGCAATGTTAA+TGG | 0.369447 | 8.1:-24985253 | MS.gene44435:CDS |
| ACAAATATTATCAGCGTCAT+TGG | 0.372388 | 8.1:+24985780 | None:intergenic |
| GAGGAATGCTTCTCCTTTCT+CGG | 0.379843 | 8.1:+24986277 | None:intergenic |
| TCCTAAAGGAATTATTCAAA+TGG | 0.384178 | 8.1:-24986674 | MS.gene44435:CDS |
| TCCAAAGACTTGGGTTTGCC+AGG | 0.387995 | 8.1:-24985730 | MS.gene44435:CDS |
| TTGGAGCTTGTGCAATGTAT+TGG | 0.402052 | 8.1:+24986075 | None:intergenic |
| GTGGTGCCTAGCGGGTTTGA+TGG | 0.413274 | 8.1:+24985961 | None:intergenic |
| TTGAAGCTGAAATGGAACTA+TGG | 0.421415 | 8.1:-24985423 | MS.gene44435:CDS |
| CATTTCAGCTTCAAATGTGT+TGG | 0.425676 | 8.1:+24985432 | None:intergenic |
| GATTTCATGGCTGAAATTAG+AGG | 0.438990 | 8.1:-24986383 | MS.gene44435:CDS |
| CTATAGTCTTTCCAAAGACT+TGG | 0.439881 | 8.1:-24985740 | MS.gene44435:CDS |
| AGAGATCTTAAGTGGAGAAC+TGG | 0.441917 | 8.1:-24986111 | MS.gene44435:CDS |
| TGCTTGTTGCAATGCTTGTT+CGG | 0.447826 | 8.1:+24986038 | None:intergenic |
| GCTAAGAATCCAGATGCATC+TGG | 0.449521 | 8.1:-24986494 | MS.gene44435:CDS |
| TTGACATTGTGGTGCCTAGC+GGG | 0.450378 | 8.1:+24985953 | None:intergenic |
| GATTTGATAGAGATCTTAAG+TGG | 0.457172 | 8.1:-24986119 | MS.gene44435:CDS |
| AGCTGCTTGGAAAGCAATGC+AGG | 0.457790 | 8.1:-24985493 | MS.gene44435:CDS |
| TACCTTCTTTCCGCCATGCT+TGG | 0.457804 | 8.1:-24985613 | MS.gene44435:CDS |
| ACCAATGCTTGTTTGAATGC+TGG | 0.468828 | 8.1:+24986407 | None:intergenic |
| GGATTGTGAACATTATCGTA+TGG | 0.469336 | 8.1:+24986694 | None:intergenic |
| CAGCTTCAAATGTGTTGGAA+TGG | 0.474679 | 8.1:+24985437 | None:intergenic |
| CTTTGAAACTAGCAATGAAA+AGG | 0.480723 | 8.1:-24985294 | MS.gene44435:CDS |
| GCCGAAGCTTGACATCTTCG+TGG | 0.488316 | 8.1:+24985657 | None:intergenic |
| GAGAAATTTACTCACTAAGT+GGG | 0.491942 | 8.1:-24985209 | MS.gene44435:CDS |
| CCTAAAGGAATTATTCAAAT+GGG | 0.495148 | 8.1:-24986673 | MS.gene44435:CDS |
| CTAAGAAGTATGAAGAGTCT+TGG | 0.495354 | 8.1:+24986740 | None:intergenic |
| GCTTTCGTTGTTGAGTCCAC+TGG | 0.495466 | 8.1:-24985265 | MS.gene44435:CDS |
| ACTCTTCATACTTCTTAGGA+TGG | 0.496264 | 8.1:-24986735 | MS.gene44435:CDS |
| AGAGAAATTTACTCACTAAG+TGG | 0.501044 | 8.1:-24985210 | MS.gene44435:CDS |
| CACCAAGCATGGCGGAAAGA+AGG | 0.506326 | 8.1:+24985611 | None:intergenic |
| CCTTAAAGTCAAAGGAGTAA+TGG | 0.507013 | 8.1:-24985992 | MS.gene44435:CDS |
| GATAATGTTCACAATCCTAA+AGG | 0.507661 | 8.1:-24986688 | MS.gene44435:CDS |
| GATTGTGAACATTATCGTAT+GGG | 0.512439 | 8.1:+24986695 | None:intergenic |
| CTGGCATGCCATGGTAGTCT+TGG | 0.514145 | 8.1:+24986426 | None:intergenic |
| TGGTGCCTAGCGGGTTTGAT+GGG | 0.518811 | 8.1:+24985962 | None:intergenic |
| TAATTCACTCCTTGACATTG+TGG | 0.520906 | 8.1:+24985942 | None:intergenic |
| GCATCTGGATTCAAAAGAGA+TGG | 0.523681 | 8.1:-24986479 | MS.gene44435:CDS |
| TATAGTCTTTCCAAAGACTT+GGG | 0.530946 | 8.1:-24985739 | MS.gene44435:CDS |
| CTCTTCATACTTCTTAGGAT+GGG | 0.532693 | 8.1:-24986734 | MS.gene44435:CDS |
| TTCCTACTCCTTATTATCCA+GGG | 0.533548 | 8.1:-24986253 | MS.gene44435:intron |
| TCCAAACTTCATCAGCGTCA+TGG | 0.537282 | 8.1:-24985836 | MS.gene44435:CDS |
| GCCAGCATTCAAACAAGCAT+TGG | 0.538139 | 8.1:-24986408 | MS.gene44435:CDS |
| GGTTTGCCAGGTTTCCGTGT+TGG | 0.539924 | 8.1:-24985718 | MS.gene44435:CDS |
| GCCACGAAGATGTCAAGCTT+CGG | 0.543189 | 8.1:-24985658 | MS.gene44435:CDS |
| ATGGCACCAACACGGAAACC+TGG | 0.544960 | 8.1:+24985712 | None:intergenic |
| CTTGGAAGAGAGCAAGTTCA+CGG | 0.552418 | 8.1:+24986444 | None:intergenic |
| GTTTGAATGCTGGCATGCCA+TGG | 0.557856 | 8.1:+24986417 | None:intergenic |
| TCTTGTCATTGTACAGAACC+AGG | 0.559141 | 8.1:-24985355 | MS.gene44435:CDS |
| AAAAGCCGGAATTAGCTGCT+TGG | 0.561044 | 8.1:-24985506 | MS.gene44435:CDS |
| GCGGTGAGAACTATGTGGTT+GGG | 0.564851 | 8.1:+24986341 | None:intergenic |
| GTGAAATGTTTAAACCAACT+TGG | 0.565975 | 8.1:+24985386 | None:intergenic |
| AAGAAAATAGTGTACCAAGT+TGG | 0.566563 | 8.1:-24985400 | MS.gene44435:CDS |
| AAAGCAACTTGTAATAGTCA+TGG | 0.582182 | 8.1:-24986763 | MS.gene44435:CDS |
| AAACGCAACCTTAAAGTCAA+AGG | 0.585930 | 8.1:-24986000 | MS.gene44435:CDS |
| CATCTACTCCGAAAATGATA+CGG | 0.588804 | 8.1:-24985692 | MS.gene44435:CDS |
| TGCGGTGAGAACTATGTGGT+TGG | 0.600293 | 8.1:+24986340 | None:intergenic |
| AAACACACACGAAACCAACC+TGG | 0.602737 | 8.1:+24985337 | None:intergenic |
| GTCATTGTACAGAACCAGGT+TGG | 0.607425 | 8.1:-24985351 | MS.gene44435:CDS |
| AACCACATAGTTCTCACCGC+AGG | 0.611056 | 8.1:-24986338 | MS.gene44435:CDS |
| CTGGATAATAAGGAGTAGGA+AGG | 0.613137 | 8.1:+24986255 | None:intergenic |
| GATAATAAGGAGTAGGAAGG+AGG | 0.616132 | 8.1:+24986258 | None:intergenic |
| CGGAGTAGATGGCACCAACA+CGG | 0.622408 | 8.1:+24985704 | None:intergenic |
| ATAAGCGACGAGATTTACTC+CGG | 0.625337 | 8.1:-24985874 | MS.gene44435:CDS |
| TGATCAACGTGATCAACAAG+AGG | 0.629251 | 8.1:-24985167 | MS.gene44435:CDS |
| GTTGGTTTAAACATTTCACC+TGG | 0.630672 | 8.1:-24985382 | MS.gene44435:CDS |
| AACGTGATCAACAAGAGGAA+CGG | 0.630998 | 8.1:-24985162 | MS.gene44435:CDS |
| TACCCTGGATAATAAGGAGT+AGG | 0.632955 | 8.1:+24986251 | None:intergenic |
| CGCTAGGCACCACAATGTCA+AGG | 0.634181 | 8.1:-24985951 | MS.gene44435:CDS |
| AACACCATTAACATTGCCAG+TGG | 0.635347 | 8.1:+24985249 | None:intergenic |
| CTTGACATTGTGGTGCCTAG+CGG | 0.638500 | 8.1:+24985952 | None:intergenic |
| GACGCTGATGAAGTTTGGAG+AGG | 0.643971 | 8.1:+24985840 | None:intergenic |
| ACAAACCCATCAAACCCGCT+AGG | 0.648673 | 8.1:-24985967 | MS.gene44435:CDS |
| GCTCTCTTCCAAGACTACCA+TGG | 0.688190 | 8.1:-24986434 | MS.gene44435:CDS |
| ATTTGCTGAAGTAGAACCTG+CGG | 0.695572 | 8.1:+24986322 | None:intergenic |
| GTACAATGACAAGATGAACC+AGG | 0.699733 | 8.1:+24985364 | None:intergenic |
| ATTGCAACAAGCATACCAAG+AGG | 0.713636 | 8.1:-24986028 | MS.gene44435:CDS |
| AACCTGCGGTGAGAACTATG+TGG | 0.788440 | 8.1:+24986336 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAGTACAAATAAATTTTTA+AGG | + | chr8.1:24985366-24985385 | None:intergenic | 10.0% |
| !! | GCAAAAGAAAAAAAAAATAT+TGG | + | chr8.1:24985394-24985413 | None:intergenic | 15.0% |
| ! | CCTAAAGGAATTATTCAAAT+GGG | - | chr8.1:24985267-24985286 | MS.gene44435:CDS | 25.0% |
| ! | TCCTAAAGGAATTATTCAAA+TGG | - | chr8.1:24985266-24985285 | MS.gene44435:CDS | 25.0% |
| AAAGCAACTTGTAATAGTCA+TGG | - | chr8.1:24985177-24985196 | MS.gene44435:CDS | 30.0% | |
| AAGAAAATAGTGTACCAAGT+TGG | - | chr8.1:24986540-24986559 | MS.gene44435:intron | 30.0% | |
| ACAAATATTATCAGCGTCAT+TGG | + | chr8.1:24986163-24986182 | None:intergenic | 30.0% | |
| AGAGAAATTTACTCACTAAG+TGG | - | chr8.1:24986730-24986749 | MS.gene44435:CDS | 30.0% | |
| CCCATTTGAATAATTCCTTT+AGG | + | chr8.1:24985270-24985289 | None:intergenic | 30.0% | |
| GAGAAATTTACTCACTAAGT+GGG | - | chr8.1:24986731-24986750 | MS.gene44435:CDS | 30.0% | |
| GATAATGTTCACAATCCTAA+AGG | - | chr8.1:24985252-24985271 | MS.gene44435:CDS | 30.0% | |
| GATTGTGAACATTATCGTAT+GGG | + | chr8.1:24985248-24985267 | None:intergenic | 30.0% | |
| GATTTGATAGAGATCTTAAG+TGG | - | chr8.1:24985821-24985840 | MS.gene44435:CDS | 30.0% | |
| GTGAAATGTTTAAACCAACT+TGG | + | chr8.1:24986557-24986576 | None:intergenic | 30.0% | |
| TATAGTCTTTCCAAAGACTT+GGG | - | chr8.1:24986201-24986220 | MS.gene44435:intron | 30.0% | |
| ! | AAAAACAATGTTACTTACCC+TGG | + | chr8.1:24985707-24985726 | None:intergenic | 30.0% |
| ! | GTTTTCAGCTAAGTAGTTTT+TGG | + | chr8.1:24986367-24986386 | None:intergenic | 30.0% |
| !! | CAATGCAGGATTATTTTGTT+GGG | - | chr8.1:24986461-24986480 | MS.gene44435:CDS | 30.0% |
| !! | CTTTGAAACTAGCAATGAAA+AGG | - | chr8.1:24986646-24986665 | MS.gene44435:intron | 30.0% |
| !!! | TATTTTGTTGGGTTGATATG+AGG | - | chr8.1:24986472-24986491 | MS.gene44435:CDS | 30.0% |
| AAACGCAACCTTAAAGTCAA+AGG | - | chr8.1:24985940-24985959 | MS.gene44435:CDS | 35.0% | |
| ACTCTTCATACTTCTTAGGA+TGG | - | chr8.1:24985205-24985224 | MS.gene44435:CDS | 35.0% | |
| CAAGACTCTTCATACTTCTT+AGG | - | chr8.1:24985201-24985220 | MS.gene44435:CDS | 35.0% | |
| CATCTACTCCGAAAATGATA+CGG | - | chr8.1:24986248-24986267 | MS.gene44435:intron | 35.0% | |
| CATTTCAGCTTCAAATGTGT+TGG | + | chr8.1:24986511-24986530 | None:intergenic | 35.0% | |
| CCTTAAAGTCAAAGGAGTAA+TGG | - | chr8.1:24985948-24985967 | MS.gene44435:CDS | 35.0% | |
| CTATAGTCTTTCCAAAGACT+TGG | - | chr8.1:24986200-24986219 | MS.gene44435:intron | 35.0% | |
| CTCTTCATACTTCTTAGGAT+GGG | - | chr8.1:24985206-24985225 | MS.gene44435:CDS | 35.0% | |
| GATTTCATGGCTGAAATTAG+AGG | - | chr8.1:24985557-24985576 | MS.gene44435:CDS | 35.0% | |
| GGATTGTGAACATTATCGTA+TGG | + | chr8.1:24985249-24985268 | None:intergenic | 35.0% | |
| GTTACTTACCCTGGATAATA+AGG | + | chr8.1:24985698-24985717 | None:intergenic | 35.0% | |
| TAATTCACTCCTTGACATTG+TGG | + | chr8.1:24986001-24986020 | None:intergenic | 35.0% | |
| TTCCTACTCCTTATTATCCA+GGG | - | chr8.1:24985687-24985706 | MS.gene44435:CDS | 35.0% | |
| TTCGGTTACTTGAAAGTTGT+TGG | + | chr8.1:24985887-24985906 | None:intergenic | 35.0% | |
| TTGAAGCTGAAATGGAACTA+TGG | - | chr8.1:24986517-24986536 | MS.gene44435:CDS | 35.0% | |
| ! | AGCAACAACCGTATCATTTT+CGG | + | chr8.1:24986259-24986278 | None:intergenic | 35.0% |
| ! | CAACACATTTGAAGCTGAAA+TGG | - | chr8.1:24986509-24986528 | MS.gene44435:CDS | 35.0% |
| ! | CCATTACTCCTTTGACTTTA+AGG | + | chr8.1:24985951-24985970 | None:intergenic | 35.0% |
| ! | CTAAGAAGTATGAAGAGTCT+TGG | + | chr8.1:24985203-24985222 | None:intergenic | 35.0% |
| ! | CTTTTGATCTCTTGGAATCA+TGG | - | chr8.1:24985420-24985439 | MS.gene44435:CDS | 35.0% |
| ! | GTTGGTTTAAACATTTCACC+TGG | - | chr8.1:24986558-24986577 | MS.gene44435:intron | 35.0% |
| !! | ACAAGCATTGGTAGATTTCA+TGG | - | chr8.1:24985544-24985563 | MS.gene44435:CDS | 35.0% |
| !! | GCAATGCAGGATTATTTTGT+TGG | - | chr8.1:24986460-24986479 | MS.gene44435:CDS | 35.0% |
| !! | TACTCACTAAGTGGGTTTTT+CGG | - | chr8.1:24986739-24986758 | MS.gene44435:CDS | 35.0% |
| !!! | GAATTTTTTGTCACCAAGCA+TGG | + | chr8.1:24986343-24986362 | None:intergenic | 35.0% |
| AACACCATTAACATTGCCAG+TGG | + | chr8.1:24986694-24986713 | None:intergenic | 40.0% | |
| AACGTGATCAACAAGAGGAA+CGG | - | chr8.1:24986778-24986797 | MS.gene44435:CDS | 40.0% | |
| ACCAATGCTTGTTTGAATGC+TGG | + | chr8.1:24985536-24985555 | None:intergenic | 40.0% | |
| AGAGATCTTAAGTGGAGAAC+TGG | - | chr8.1:24985829-24985848 | MS.gene44435:CDS | 40.0% | |
| ATAAGCGACGAGATTTACTC+CGG | - | chr8.1:24986066-24986085 | MS.gene44435:CDS | 40.0% | |
| ATTGCAACAAGCATACCAAG+AGG | - | chr8.1:24985912-24985931 | MS.gene44435:CDS | 40.0% | |
| CAGCTTCAAATGTGTTGGAA+TGG | + | chr8.1:24986506-24986525 | None:intergenic | 40.0% | |
| CTGGATAATAAGGAGTAGGA+AGG | + | chr8.1:24985688-24985707 | None:intergenic | 40.0% | |
| CTTCCTACTCCTTATTATCC+AGG | - | chr8.1:24985686-24985705 | MS.gene44435:CDS | 40.0% | |
| GATAATAAGGAGTAGGAAGG+AGG | + | chr8.1:24985685-24985704 | None:intergenic | 40.0% | |
| GCATCTGGATTCAAAAGAGA+TGG | - | chr8.1:24985461-24985480 | MS.gene44435:CDS | 40.0% | |
| GTACAATGACAAGATGAACC+AGG | + | chr8.1:24986579-24986598 | None:intergenic | 40.0% | |
| TACCCTGGATAATAAGGAGT+AGG | + | chr8.1:24985692-24985711 | None:intergenic | 40.0% | |
| TCTTGTCATTGTACAGAACC+AGG | - | chr8.1:24986585-24986604 | MS.gene44435:intron | 40.0% | |
| TGATCAACGTGATCAACAAG+AGG | - | chr8.1:24986773-24986792 | MS.gene44435:CDS | 40.0% | |
| TTGGAGCTTGTGCAATGTAT+TGG | + | chr8.1:24985868-24985887 | None:intergenic | 40.0% | |
| ! | ACGTCAGAACAAGCTTGTTT+CGG | - | chr8.1:24986404-24986423 | MS.gene44435:CDS | 40.0% |
| ! | ATGTTTTGTCTTGCCGAGAA+AGG | - | chr8.1:24985650-24985669 | MS.gene44435:CDS | 40.0% |
| ! | ATTTGCTGAAGTAGAACCTG+CGG | + | chr8.1:24985621-24985640 | None:intergenic | 40.0% |
| ! | CGTATCATTTTCGGAGTAGA+TGG | + | chr8.1:24986250-24986269 | None:intergenic | 40.0% |
| ! | CTTTTGAATCCAGATGCATC+TGG | + | chr8.1:24985458-24985477 | None:intergenic | 40.0% |
| ! | TGCTTGTTGCAATGCTTGTT+CGG | + | chr8.1:24985905-24985924 | None:intergenic | 40.0% |
| !! | GTTTCGGGTTTACAAAAAGC+CGG | - | chr8.1:24986420-24986439 | MS.gene44435:CDS | 40.0% |
| !!! | TTTTTTGTCACCAAGCATGG+CGG | + | chr8.1:24986340-24986359 | None:intergenic | 40.0% |
| AAAAGCCGGAATTAGCTGCT+TGG | - | chr8.1:24986434-24986453 | MS.gene44435:CDS | 45.0% | |
| AAACACACACGAAACCAACC+TGG | + | chr8.1:24986606-24986625 | None:intergenic | 45.0% | |
| CTTGGAAGAGAGCAAGTTCA+CGG | + | chr8.1:24985499-24985518 | None:intergenic | 45.0% | |
| GAGAGCAAGTTCACGGAATA+TGG | + | chr8.1:24985492-24985511 | None:intergenic | 45.0% | |
| GAGGAATGCTTCTCCTTTCT+CGG | + | chr8.1:24985666-24985685 | None:intergenic | 45.0% | |
| GAGTCCACTGGCAATGTTAA+TGG | - | chr8.1:24986687-24986706 | MS.gene44435:CDS | 45.0% | |
| GCCAGCATTCAAACAAGCAT+TGG | - | chr8.1:24985532-24985551 | MS.gene44435:CDS | 45.0% | |
| GCTAAGAATCCAGATGCATC+TGG | - | chr8.1:24985446-24985465 | MS.gene44435:CDS | 45.0% | |
| GCTTTCCAAGCAGCTAATTC+CGG | + | chr8.1:24986442-24986461 | None:intergenic | 45.0% | |
| GTCATTGTACAGAACCAGGT+TGG | - | chr8.1:24986589-24986608 | MS.gene44435:intron | 45.0% | |
| TCCAAACTTCATCAGCGTCA+TGG | - | chr8.1:24986104-24986123 | MS.gene44435:CDS | 45.0% | |
| TCCATGACGCTGATGAAGTT+TGG | + | chr8.1:24986108-24986127 | None:intergenic | 45.0% | |
| TGGAGAGGAAAAAACAGTGC+CGG | + | chr8.1:24986088-24986107 | None:intergenic | 45.0% | |
| ! | CGTCAGAACAAGCTTGTTTC+GGG | - | chr8.1:24986405-24986424 | MS.gene44435:CDS | 45.0% |
| ! | GCAGCTCTCTTTTGATCTCT+TGG | - | chr8.1:24985412-24985431 | MS.gene44435:CDS | 45.0% |
| AACCACATAGTTCTCACCGC+AGG | - | chr8.1:24985602-24985621 | MS.gene44435:CDS | 50.0% | |
| AACCTGCGGTGAGAACTATG+TGG | + | chr8.1:24985607-24985626 | None:intergenic | 50.0% | |
| ACAAACCCATCAAACCCGCT+AGG | - | chr8.1:24985973-24985992 | MS.gene44435:CDS | 50.0% | |
| ACCTGGCAAACCCAAGTCTT+TGG | + | chr8.1:24986214-24986233 | None:intergenic | 50.0% | |
| AGCTGCTTGGAAAGCAATGC+AGG | - | chr8.1:24986447-24986466 | MS.gene44435:CDS | 50.0% | |
| CTTGACATTGTGGTGCCTAG+CGG | + | chr8.1:24985991-24986010 | None:intergenic | 50.0% | |
| GACGCTGATGAAGTTTGGAG+AGG | + | chr8.1:24986103-24986122 | None:intergenic | 50.0% | |
| GCCACGAAGATGTCAAGCTT+CGG | - | chr8.1:24986282-24986301 | MS.gene44435:CDS | 50.0% | |
| GCGGTGAGAACTATGTGGTT+GGG | + | chr8.1:24985602-24985621 | None:intergenic | 50.0% | |
| GCTCTCTTCCAAGACTACCA+TGG | - | chr8.1:24985506-24985525 | MS.gene44435:CDS | 50.0% | |
| GCTTTCGTTGTTGAGTCCAC+TGG | - | chr8.1:24986675-24986694 | MS.gene44435:CDS | 50.0% | |
| GTTTGAATGCTGGCATGCCA+TGG | + | chr8.1:24985526-24985545 | None:intergenic | 50.0% | |
| TACCTTCTTTCCGCCATGCT+TGG | - | chr8.1:24986327-24986346 | MS.gene44435:CDS | 50.0% | |
| TCCAAAGACTTGGGTTTGCC+AGG | - | chr8.1:24986210-24986229 | MS.gene44435:intron | 50.0% | |
| TGCGGTGAGAACTATGTGGT+TGG | + | chr8.1:24985603-24985622 | None:intergenic | 50.0% | |
| TTGACATTGTGGTGCCTAGC+GGG | + | chr8.1:24985990-24986009 | None:intergenic | 50.0% | |
| ! | GGTTGCGTTTTTGTGCCTCT+TGG | + | chr8.1:24985930-24985949 | None:intergenic | 50.0% |
| ATGGCACCAACACGGAAACC+TGG | + | chr8.1:24986231-24986250 | None:intergenic | 55.0% | |
| CGCTAGGCACCACAATGTCA+AGG | - | chr8.1:24985989-24986008 | MS.gene44435:CDS | 55.0% | |
| CGGAGTAGATGGCACCAACA+CGG | + | chr8.1:24986239-24986258 | None:intergenic | 55.0% | |
| CTGGCATGCCATGGTAGTCT+TGG | + | chr8.1:24985517-24985536 | None:intergenic | 55.0% | |
| GCCGAAGCTTGACATCTTCG+TGG | + | chr8.1:24986286-24986305 | None:intergenic | 55.0% | |
| GGTTTGCCAGGTTTCCGTGT+TGG | - | chr8.1:24986222-24986241 | MS.gene44435:intron | 55.0% | |
| ! | CACCAAGCATGGCGGAAAGA+AGG | + | chr8.1:24986332-24986351 | None:intergenic | 55.0% |
| !! | TGGTGCCTAGCGGGTTTGAT+GGG | + | chr8.1:24985981-24986000 | None:intergenic | 55.0% |
| !! | GTGGTGCCTAGCGGGTTTGA+TGG | + | chr8.1:24985982-24986001 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 24985159 | 24986803 | 24985159 | ID=MS.gene44435 |
| chr8.1 | mRNA | 24985159 | 24986803 | 24985159 | ID=MS.gene44435.t1;Parent=MS.gene44435 |
| chr8.1 | exon | 24986657 | 24986803 | 24986657 | ID=MS.gene44435.t1.exon1;Parent=MS.gene44435.t1 |
| chr8.1 | CDS | 24986657 | 24986803 | 24986657 | ID=cds.MS.gene44435.t1;Parent=MS.gene44435.t1 |
| chr8.1 | exon | 24986254 | 24986546 | 24986254 | ID=MS.gene44435.t1.exon2;Parent=MS.gene44435.t1 |
| chr8.1 | CDS | 24986254 | 24986546 | 24986254 | ID=cds.MS.gene44435.t1;Parent=MS.gene44435.t1 |
| chr8.1 | exon | 24985159 | 24986140 | 24985159 | ID=MS.gene44435.t1.exon3;Parent=MS.gene44435.t1 |
| chr8.1 | CDS | 24985159 | 24986140 | 24985159 | ID=cds.MS.gene44435.t1;Parent=MS.gene44435.t1 |
| Gene Sequence |
| Protein sequence |
