Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44811.t1 | XP_003615482.1 | 100 | 146 | 0 | 0 | 1 | 146 | 8 | 153 | 6.00E-75 | 290 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44811.t1 | Q6AWV1 | 59.9 | 147 | 54 | 2 | 1 | 146 | 9 | 151 | 5.2e-43 | 175.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44811.t1 | G7K656 | 100.0 | 146 | 0 | 0 | 1 | 146 | 8 | 153 | 4.3e-75 | 290.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049368 | MS.gene44811 | 0.816411 | 5.61E-52 | -1.69E-46 |
| MS.gene049821 | MS.gene44811 | 0.836114 | 1.13E-56 | -1.69E-46 |
| MS.gene049850 | MS.gene44811 | 0.804024 | 2.63E-49 | -1.69E-46 |
| MS.gene050237 | MS.gene44811 | 0.826249 | 3.01E-54 | -1.69E-46 |
| MS.gene05134 | MS.gene44811 | 0.803384 | 3.58E-49 | -1.69E-46 |
| MS.gene051719 | MS.gene44811 | 0.80042 | 1.45E-48 | -1.69E-46 |
| MS.gene052239 | MS.gene44811 | -0.80279 | 4.75E-49 | -1.69E-46 |
| MS.gene052519 | MS.gene44811 | 0.800947 | 1.13E-48 | -1.69E-46 |
| MS.gene053079 | MS.gene44811 | 0.805992 | 1.02E-49 | -1.69E-46 |
| MS.gene05364 | MS.gene44811 | 0.827096 | 1.89E-54 | -1.69E-46 |
| MS.gene05415 | MS.gene44811 | 0.830027 | 3.70E-55 | -1.69E-46 |
| MS.gene055818 | MS.gene44811 | 0.800586 | 1.34E-48 | -1.69E-46 |
| MS.gene055841 | MS.gene44811 | 0.806176 | 9.34E-50 | -1.69E-46 |
| MS.gene056776 | MS.gene44811 | 0.805022 | 1.63E-49 | -1.69E-46 |
| MS.gene057060 | MS.gene44811 | 0.833484 | 5.19E-56 | -1.69E-46 |
| MS.gene057208 | MS.gene44811 | 0.803729 | 3.03E-49 | -1.69E-46 |
| MS.gene057598 | MS.gene44811 | 0.808026 | 3.79E-50 | -1.69E-46 |
| MS.gene057693 | MS.gene44811 | 0.80305 | 4.19E-49 | -1.69E-46 |
| MS.gene058636 | MS.gene44811 | 0.809593 | 1.75E-50 | -1.69E-46 |
| MS.gene058979 | MS.gene44811 | 0.816037 | 6.80E-52 | -1.69E-46 |
| MS.gene060572 | MS.gene44811 | 0.808789 | 2.61E-50 | -1.69E-46 |
| MS.gene060587 | MS.gene44811 | 0.805713 | 1.17E-49 | -1.69E-46 |
| MS.gene060634 | MS.gene44811 | -0.816476 | 5.42E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44811.t1 | MTR_5g068650 | 100.000 | 146 | 0 | 0 | 1 | 146 | 8 | 153 | 7.84e-108 | 303 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44811.t1 | AT1G04635 | 59.864 | 147 | 54 | 2 | 1 | 146 | 9 | 151 | 4.14e-61 | 185 |
Find 26 sgRNAs with CRISPR-Local
Find 187 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATAGCATCTTGGTGAATTT+TGG | 0.109041 | 5.4:-53621929 | MS.gene44811:CDS |
| TGCATCACTGGGATCATTTC+AGG | 0.134096 | 5.4:-53621891 | MS.gene44811:CDS |
| GTGTGGTTTGGCTGCATCAC+TGG | 0.252366 | 5.4:-53621903 | MS.gene44811:CDS |
| TTTAATTTGCTTGATTTATC+TGG | 0.270551 | 5.4:-53621626 | MS.gene44811:intron |
| CTTTGGTTCAGGAAATTTAC+AGG | 0.272476 | 5.4:-53619620 | MS.gene44811:intron |
| ATTTGAGCAGTTCAAACTTA+TGG | 0.275431 | 5.4:-53619560 | MS.gene44811:CDS |
| TCTTGCTAAGATCGAAGTTT+TGG | 0.279590 | 5.4:-53619491 | MS.gene44811:CDS |
| TCACTAATGTGTGTATCATT+AGG | 0.279879 | 5.4:-53621724 | MS.gene44811:CDS |
| CCTGCCGCTTGGTCCTTGTT+AGG | 0.320650 | 5.4:+53621998 | None:intergenic |
| TCAAGCAAATTAAACACAAC+TGG | 0.340230 | 5.4:+53621635 | None:intergenic |
| CACTAATGTGTGTATCATTA+GGG | 0.353776 | 5.4:-53621723 | MS.gene44811:CDS |
| ATGATACACACATTAGTGAT+TGG | 0.422141 | 5.4:+53621728 | None:intergenic |
| ATCACAATGGTCAGAAGTAT+TGG | 0.427749 | 5.4:-53621665 | MS.gene44811:CDS |
| TGTGGTTTGGCTGCATCACT+GGG | 0.515656 | 5.4:-53621902 | MS.gene44811:CDS |
| TGCTATAAAAGATAGCATCT+TGG | 0.524489 | 5.4:-53621939 | MS.gene44811:CDS |
| CCTAACAAGGACCAAGCGGC+AGG | 0.534913 | 5.4:-53621998 | MS.gene44811:CDS |
| GAGCAGTTCAAACTTATGGT+TGG | 0.536131 | 5.4:-53619556 | MS.gene44811:CDS |
| GCATCACTGGGATCATTTCA+GGG | 0.547289 | 5.4:-53621890 | MS.gene44811:intron |
| AATACTTCTGACCATTGTGA+TGG | 0.548904 | 5.4:+53621667 | None:intergenic |
| TAATAGAATCACCTGCCGCT+TGG | 0.561708 | 5.4:+53621987 | None:intergenic |
| GACTGCTGCATTAAAGTGTG+AGG | 0.576828 | 5.4:-53619590 | MS.gene44811:CDS |
| AAATAGATACATGGTGATGG+AGG | 0.605272 | 5.4:-53622032 | None:intergenic |
| CAAGCAAATTAAACACAACT+GGG | 0.605699 | 5.4:+53621636 | None:intergenic |
| TGGTGATCGATTATCAGCTG+AGG | 0.675265 | 5.4:-53619536 | MS.gene44811:CDS |
| GAATCCTAACAAGGACCAAG+CGG | 0.677581 | 5.4:-53622002 | MS.gene44811:CDS |
| AGTATGGGCTTCCATCACAA+TGG | 0.688002 | 5.4:-53621678 | MS.gene44811:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTGTATAATGTTTATT+TGG | + | chr5.4:53620255-53620274 | None:intergenic | 10.0% |
| !! | AAAAGTCTATATGTATAAAT+AGG | + | chr5.4:53620802-53620821 | None:intergenic | 15.0% |
| !! | TATTAATTGAAAAGTAAGAA+AGG | + | chr5.4:53621654-53621673 | None:intergenic | 15.0% |
| !! | TTATACAAAATATGAAATGA+AGG | - | chr5.4:53620263-53620282 | MS.gene44811:intron | 15.0% |
| !!! | GAAATAATTTAAAATCAGAT+AGG | + | chr5.4:53621204-53621223 | None:intergenic | 15.0% |
| !!! | TTGATAATTTTTTCACTTTT+GGG | - | chr5.4:53619727-53619746 | MS.gene44811:intron | 15.0% |
| !!! | TTTCTTACTTTTCAATTAAT+AGG | - | chr5.4:53621653-53621672 | MS.gene44811:CDS | 15.0% |
| !!! | TTTGATAATTTTTTCACTTT+TGG | - | chr5.4:53619726-53619745 | MS.gene44811:intron | 15.0% |
| !! | AAAAGAAAATTGAGAAATTC+TGG | - | chr5.4:53620019-53620038 | MS.gene44811:intron | 20.0% |
| !! | AAAATTAAAAATTCTCCTCA+TGG | - | chr5.4:53620955-53620974 | MS.gene44811:intron | 20.0% |
| !! | AAATTGATAAAACAGAGAAA+AGG | + | chr5.4:53621775-53621794 | None:intergenic | 20.0% |
| !! | ATATTGGAATAACAGAAAAA+AGG | - | chr5.4:53619971-53619990 | MS.gene44811:intron | 20.0% |
| !! | TATTGGAATAACAGAAAAAA+GGG | - | chr5.4:53619972-53619991 | MS.gene44811:intron | 20.0% |
| !! | TATTTCTTATACCAAAAGAA+AGG | + | chr5.4:53620601-53620620 | None:intergenic | 20.0% |
| !! | TTATTCCAATATTGTCATAA+AGG | + | chr5.4:53619963-53619982 | None:intergenic | 20.0% |
| !!! | CCAAAAATAATCTTGTTTTT+GGG | + | chr5.4:53621259-53621278 | None:intergenic | 20.0% |
| !!! | TTTAATTTGCTTGATTTATC+TGG | - | chr5.4:53619879-53619898 | MS.gene44811:intron | 20.0% |
| ! | AAAAAAGTCCTGTTATATAG+AGG | - | chr5.4:53620438-53620457 | MS.gene44811:intron | 25.0% |
| ! | AGTAATATGCAAAACATGAT+AGG | + | chr5.4:53621705-53621724 | None:intergenic | 25.0% |
| ! | ATTAAAGAAAAGTCTATCTC+AGG | + | chr5.4:53620337-53620356 | None:intergenic | 25.0% |
| ! | ATTGGAATAACAGAAAAAAG+GGG | - | chr5.4:53619973-53619992 | MS.gene44811:intron | 25.0% |
| ! | GTAATATGCAAAACATGATA+GGG | + | chr5.4:53621704-53621723 | None:intergenic | 25.0% |
| ! | TAAGAAATAATTCCCAAAAC+CGG | - | chr5.4:53620612-53620631 | MS.gene44811:intron | 25.0% |
| ! | TATTTCTCTATAGTCTATCT+CGG | + | chr5.4:53620365-53620384 | None:intergenic | 25.0% |
| ! | TCATCTTGGATTATCATTAA+CGG | - | chr5.4:53620217-53620236 | MS.gene44811:intron | 25.0% |
| ! | TGAGAAAATTACTAAACAGA+AGG | + | chr5.4:53619685-53619704 | None:intergenic | 25.0% |
| ! | TGAGAAATGATAAAGAGAAT+AGG | - | chr5.4:53620675-53620694 | MS.gene44811:intron | 25.0% |
| ! | TTAAAGAAAAGTCTATCTCA+GGG | + | chr5.4:53620336-53620355 | None:intergenic | 25.0% |
| ! | TTAATGATAATCCAAGATGA+GGG | + | chr5.4:53620217-53620236 | None:intergenic | 25.0% |
| ! | TTCTATTACCTCTATATAAC+AGG | + | chr5.4:53620449-53620468 | None:intergenic | 25.0% |
| !! | AAGTTGGTTGAGATAAAATT+TGG | + | chr5.4:53621006-53621025 | None:intergenic | 25.0% |
| !! | AGAAGAGTATGAAAAAGTAT+GGG | - | chr5.4:53619812-53619831 | MS.gene44811:intron | 25.0% |
| !! | ATACTGGTTATGAAATATGA+AGG | + | chr5.4:53620188-53620207 | None:intergenic | 25.0% |
| !! | ATATTGGTTATGAAATACGA+AGG | + | chr5.4:53620545-53620564 | None:intergenic | 25.0% |
| !! | ATGATCAACACTATGTTTTT+AGG | - | chr5.4:53621451-53621470 | MS.gene44811:intron | 25.0% |
| !! | CCCAAAAACAAGATTATTTT+TGG | - | chr5.4:53621256-53621275 | MS.gene44811:intron | 25.0% |
| !! | TGAGATAGACTTTTCTTTAA+TGG | - | chr5.4:53620336-53620355 | MS.gene44811:intron | 25.0% |
| !! | TGTGTTAGATACTATTTTCA+TGG | - | chr5.4:53619996-53620015 | MS.gene44811:intron | 25.0% |
| !!! | GCCAAAAATAATCTTGTTTT+TGG | + | chr5.4:53621260-53621279 | None:intergenic | 25.0% |
| !!! | TAATTTTTTCACTTTTGGGT+CGG | - | chr5.4:53619731-53619750 | MS.gene44811:intron | 25.0% |
| !!! | TGAAATTTTTGGCAGAAAAT+TGG | - | chr5.4:53621562-53621581 | MS.gene44811:intron | 25.0% |
| !!! | TTTTGAGAAATCTATATACC+AGG | + | chr5.4:53620421-53620440 | None:intergenic | 25.0% |
| !!! | TTTTTAGGTTACAACAATTC+AGG | - | chr5.4:53621466-53621485 | MS.gene44811:intron | 25.0% |
| AAAAGATGGTATCATGCATA+TGG | + | chr5.4:53621812-53621831 | None:intergenic | 30.0% | |
| AAGAAATAATTCCCAAAACC+GGG | - | chr5.4:53620613-53620632 | MS.gene44811:intron | 30.0% | |
| AGTAATAGATTTCAACCTTG+AGG | + | chr5.4:53620903-53620922 | None:intergenic | 30.0% | |
| ATAGATGACATGACTTTGTT+TGG | - | chr5.4:53621513-53621532 | MS.gene44811:intron | 30.0% | |
| ATAGCGTGAGTAATAGTAAA+TGG | - | chr5.4:53620305-53620324 | MS.gene44811:intron | 30.0% | |
| ATGATACACACATTAGTGAT+TGG | + | chr5.4:53619780-53619799 | None:intergenic | 30.0% | |
| ATTTCTCTATAGTCTATCTC+GGG | + | chr5.4:53620364-53620383 | None:intergenic | 30.0% | |
| ATTTGAGCAGTTCAAACTTA+TGG | - | chr5.4:53621945-53621964 | MS.gene44811:CDS | 30.0% | |
| CAAAAAAGGAAGGAGAAAAA+AGG | + | chr5.4:53619931-53619950 | None:intergenic | 30.0% | |
| CAAGCAAATTAAACACAACT+GGG | + | chr5.4:53619872-53619891 | None:intergenic | 30.0% | |
| CACTAATGTGTGTATCATTA+GGG | - | chr5.4:53619782-53619801 | MS.gene44811:intron | 30.0% | |
| CATAGTAGTTTGATATGGTT+TGG | - | chr5.4:53621587-53621606 | MS.gene44811:intron | 30.0% | |
| CTAAACAGAAGGAAAACAAT+AGG | + | chr5.4:53619674-53619693 | None:intergenic | 30.0% | |
| CTGATATGAAATTGTACCTT+TGG | - | chr5.4:53621868-53621887 | MS.gene44811:intron | 30.0% | |
| GAACTCCTTTATGACAATAT+TGG | - | chr5.4:53619955-53619974 | MS.gene44811:intron | 30.0% | |
| GTTAATGATAATCCAAGATG+AGG | + | chr5.4:53620218-53620237 | None:intergenic | 30.0% | |
| TAACTAGAGTAGTTAAGAGT+TGG | + | chr5.4:53620843-53620862 | None:intergenic | 30.0% | |
| TAATGATAATCCAAGATGAG+GGG | + | chr5.4:53620216-53620235 | None:intergenic | 30.0% | |
| TAGCGTGAGTAATAGTAAAT+GGG | - | chr5.4:53620306-53620325 | MS.gene44811:intron | 30.0% | |
| TATCAATTTGATCTTGCCAT+TGG | - | chr5.4:53621786-53621805 | MS.gene44811:intron | 30.0% | |
| TCAAGCAAATTAAACACAAC+TGG | + | chr5.4:53619873-53619892 | None:intergenic | 30.0% | |
| TCACTAATGTGTGTATCATT+AGG | - | chr5.4:53619781-53619800 | MS.gene44811:intron | 30.0% | |
| TCGTTTCTCTGTAATAATGA+TGG | - | chr5.4:53621409-53621428 | MS.gene44811:intron | 30.0% | |
| TGCTATAAAAGATAGCATCT+TGG | - | chr5.4:53619566-53619585 | MS.gene44811:CDS | 30.0% | |
| TGGTTCATAGTAGTTTGATA+TGG | - | chr5.4:53621582-53621601 | MS.gene44811:intron | 30.0% | |
| TTCTGTATCTTCTACATAAC+AGG | + | chr5.4:53620086-53620105 | None:intergenic | 30.0% | |
| TTTACTATTACTCACGCTAT+CGG | + | chr5.4:53620305-53620324 | None:intergenic | 30.0% | |
| ! | ATAGCATCTTGGTGAATTTT+GGG | - | chr5.4:53619577-53619596 | MS.gene44811:CDS | 30.0% |
| ! | CAAAGGTACAATTTCATATC+AGG | + | chr5.4:53621870-53621889 | None:intergenic | 30.0% |
| ! | GAGAAGAGTATGAAAAAGTA+TGG | - | chr5.4:53619811-53619830 | MS.gene44811:intron | 30.0% |
| ! | GATGCTATCTTTTATAGCAT+TGG | + | chr5.4:53619565-53619584 | None:intergenic | 30.0% |
| ! | GGTTTTTATGAATCCTAACA+AGG | - | chr5.4:53619494-53619513 | MS.gene44811:CDS | 30.0% |
| !! | TAGTTTGATATGGTTTGGTA+GGG | - | chr5.4:53621592-53621611 | MS.gene44811:intron | 30.0% |
| !! | TTGATCATTCTTTTTAGCGA+TGG | + | chr5.4:53621439-53621458 | None:intergenic | 30.0% |
| !!! | AATAATCTTGTTTTTGGGCA+AGG | + | chr5.4:53621254-53621273 | None:intergenic | 30.0% |
| AAAGGAGTTCACAGCAAAAA+AGG | + | chr5.4:53619945-53619964 | None:intergenic | 35.0% | |
| AATACTTCTGACCATTGTGA+TGG | + | chr5.4:53619841-53619860 | None:intergenic | 35.0% | |
| AATTTCATCCCTCTCTTCAT+AGG | + | chr5.4:53621549-53621568 | None:intergenic | 35.0% | |
| AGATTTCAACCTTGAGGATA+AGG | + | chr5.4:53620897-53620916 | None:intergenic | 35.0% | |
| AGTAGTGACTCTATTGTGAA+GGG | + | chr5.4:53620726-53620745 | None:intergenic | 35.0% | |
| CTGTAAATTTCCTGAACCAA+AGG | + | chr5.4:53621887-53621906 | None:intergenic | 35.0% | |
| GAATGATAGATTCAAGTGAC+AGG | + | chr5.4:53620505-53620524 | None:intergenic | 35.0% | |
| GCAAACAATGCTGAAAAACA+AGG | + | chr5.4:53621176-53621195 | None:intergenic | 35.0% | |
| GGCAAAGAGAACATTTATGA+AGG | + | chr5.4:53621288-53621307 | None:intergenic | 35.0% | |
| GTTCATGAACGAATCTTTGA+GGG | + | chr5.4:53621839-53621858 | None:intergenic | 35.0% | |
| TAAGAGCAAATACTGCATGT+TGG | - | chr5.4:53619902-53619921 | MS.gene44811:intron | 35.0% | |
| TACTGTCTTCTTGTTCCATT+GGG | - | chr5.4:53620919-53620938 | MS.gene44811:intron | 35.0% | |
| TAGATCAGGATAACAAGCAT+CGG | + | chr5.4:53620132-53620151 | None:intergenic | 35.0% | |
| TCAAAACAACCTTATCCTCA+AGG | - | chr5.4:53620885-53620904 | MS.gene44811:intron | 35.0% | |
| TCAGAGTTTCATTCAGATGA+TGG | + | chr5.4:53621752-53621771 | None:intergenic | 35.0% | |
| TCATTCTATTCAATTCTGCC+CGG | + | chr5.4:53620634-53620653 | None:intergenic | 35.0% | |
| TCTCTGTAATCATAAAGTCC+TGG | - | chr5.4:53620400-53620419 | MS.gene44811:intron | 35.0% | |
| TGAGGAATACTGCTATTGAA+AGG | - | chr5.4:53620651-53620670 | MS.gene44811:intron | 35.0% | |
| TGTTCATGAACGAATCTTTG+AGG | + | chr5.4:53621840-53621859 | None:intergenic | 35.0% | |
| TTACTGTCTTCTTGTTCCAT+TGG | - | chr5.4:53620918-53620937 | MS.gene44811:intron | 35.0% | |
| TTGCAAATGAGTGATAGATC+AGG | + | chr5.4:53620146-53620165 | None:intergenic | 35.0% | |
| TTTCTCTATAGTCTATCTCG+GGG | + | chr5.4:53620363-53620382 | None:intergenic | 35.0% | |
| ! | ATCACAATGGTCAGAAGTAT+TGG | - | chr5.4:53619840-53619859 | MS.gene44811:intron | 35.0% |
| ! | CTTTGGTTCAGGAAATTTAC+AGG | - | chr5.4:53621885-53621904 | MS.gene44811:intron | 35.0% |
| ! | GAAGAGAGGGATGAAATTTT+TGG | - | chr5.4:53621551-53621570 | MS.gene44811:intron | 35.0% |
| ! | GATAGCATCTTGGTGAATTT+TGG | - | chr5.4:53619576-53619595 | MS.gene44811:CDS | 35.0% |
| ! | TAGCATCTTGGTGAATTTTG+GGG | - | chr5.4:53619578-53619597 | MS.gene44811:CDS | 35.0% |
| ! | TCTTGCTAAGATCGAAGTTT+TGG | - | chr5.4:53622014-53622033 | MS.gene44811:CDS | 35.0% |
| ! | TCTTTGAGGGAAAGAAAAGA+TGG | + | chr5.4:53621826-53621845 | None:intergenic | 35.0% |
| ! | TGAAATTGTACCTTTGGTTC+AGG | - | chr5.4:53621874-53621893 | MS.gene44811:intron | 35.0% |
| !! | GTAGTTTGATATGGTTTGGT+AGG | - | chr5.4:53621591-53621610 | MS.gene44811:intron | 35.0% |
| !! | TAAGAGTTGGTAGTTAGTTG+AGG | + | chr5.4:53620830-53620849 | None:intergenic | 35.0% |
| !! | TTGAGGATAAGGTTGTTTTG+AGG | + | chr5.4:53620886-53620905 | None:intergenic | 35.0% |
| !!! | TTTTTTTTCTCTGCACCCAA+TGG | + | chr5.4:53620937-53620956 | None:intergenic | 35.0% |
| ACAAAGCTTCCTATGAAGAG+AGG | - | chr5.4:53621537-53621556 | MS.gene44811:intron | 40.0% | |
| ACAACCTTCTCCAAAGATCT+TGG | + | chr5.4:53621317-53621336 | None:intergenic | 40.0% | |
| ACCTTGTTGGAACTGCAAAA+TGG | + | chr5.4:53621352-53621371 | None:intergenic | 40.0% | |
| ACTGCAAAATGGCAAGTTAG+AGG | + | chr5.4:53621341-53621360 | None:intergenic | 40.0% | |
| AGTGACAGGATGATAAGCAT+TGG | + | chr5.4:53620491-53620510 | None:intergenic | 40.0% | |
| CAAAGCTTCCTATGAAGAGA+GGG | - | chr5.4:53621538-53621557 | MS.gene44811:intron | 40.0% | |
| CAATATTTGTTCCCTCGTTG+TGG | - | chr5.4:53620559-53620578 | MS.gene44811:intron | 40.0% | |
| CACAACGAGGGAACAAATAT+TGG | + | chr5.4:53620561-53620580 | None:intergenic | 40.0% | |
| CAGTGCATAATTGCAGAAGT+TGG | + | chr5.4:53621141-53621160 | None:intergenic | 40.0% | |
| CCAACAATAATCCACAACGA+GGG | + | chr5.4:53620573-53620592 | None:intergenic | 40.0% | |
| GAAATGAAGGTCAACACATC+AGG | - | chr5.4:53620276-53620295 | MS.gene44811:intron | 40.0% | |
| GAGCAGTTCAAACTTATGGT+TGG | - | chr5.4:53621949-53621968 | MS.gene44811:CDS | 40.0% | |
| GAGTAGTGACTCTATTGTGA+AGG | + | chr5.4:53620727-53620746 | None:intergenic | 40.0% | |
| GAGTTCACAGCAAAAAAGGA+AGG | + | chr5.4:53619941-53619960 | None:intergenic | 40.0% | |
| GGGCAGAATTGAATAGAATG+AGG | - | chr5.4:53620633-53620652 | MS.gene44811:intron | 40.0% | |
| GTAGTGACTCTATTGTGAAG+GGG | + | chr5.4:53620725-53620744 | None:intergenic | 40.0% | |
| TACGAAGGCTTTCAATTGTG+TGG | + | chr5.4:53620530-53620549 | None:intergenic | 40.0% | |
| ! | ATTCAATTCTGCCCGGTTTT+GGG | + | chr5.4:53620627-53620646 | None:intergenic | 40.0% |
| ! | CCTCGTTGTGGATTATTGTT+GGG | - | chr5.4:53620571-53620590 | MS.gene44811:intron | 40.0% |
| ! | TATTCAATTCTGCCCGGTTT+TGG | + | chr5.4:53620628-53620647 | None:intergenic | 40.0% |
| ! | TGTTGGGAACACCTTTCTTT+TGG | - | chr5.4:53620587-53620606 | MS.gene44811:intron | 40.0% |
| !! | AGGTGATGGGTCTAATTCAA+TGG | + | chr5.4:53621226-53621245 | None:intergenic | 40.0% |
| !!! | TGTTTTTGGGCAAGGAAGTT+AGG | + | chr5.4:53621246-53621265 | None:intergenic | 40.0% |
| AAGATGAGGGGACAACATAC+TGG | + | chr5.4:53620204-53620223 | None:intergenic | 45.0% | |
| AGGAGATAATCTCTCCTCCA+AGG | - | chr5.4:53620695-53620714 | MS.gene44811:intron | 45.0% | |
| AGTATGGGCTTCCATCACAA+TGG | - | chr5.4:53619827-53619846 | MS.gene44811:intron | 45.0% | |
| AGTATGTTGTCCCCTCATCT+TGG | - | chr5.4:53620203-53620222 | MS.gene44811:intron | 45.0% | |
| CATGATAGGGTGATGCATCA+AGG | + | chr5.4:53621691-53621710 | None:intergenic | 45.0% | |
| CCCAACAATAATCCACAACG+AGG | + | chr5.4:53620574-53620593 | None:intergenic | 45.0% | |
| CCTTCATTAGCAACAGCTGT+GGG | + | chr5.4:53621069-53621088 | None:intergenic | 45.0% | |
| GAATCCTAACAAGGACCAAG+CGG | - | chr5.4:53619503-53619522 | MS.gene44811:CDS | 45.0% | |
| GACTGCTGCATTAAAGTGTG+AGG | - | chr5.4:53621915-53621934 | MS.gene44811:CDS | 45.0% | |
| GCATCACTGGGATCATTTCA+GGG | - | chr5.4:53619615-53619634 | MS.gene44811:intron | 45.0% | |
| GGAGATAATCTCTCCTCCAA+GGG | - | chr5.4:53620696-53620715 | MS.gene44811:intron | 45.0% | |
| GGTATCATGCATATGGCCAA+TGG | + | chr5.4:53621805-53621824 | None:intergenic | 45.0% | |
| TAATAGAATCACCTGCCGCT+TGG | + | chr5.4:53619521-53619540 | None:intergenic | 45.0% | |
| TATTGTGAAGGGGAAACCCT+TGG | + | chr5.4:53620715-53620734 | None:intergenic | 45.0% | |
| TCCTTCATTAGCAACAGCTG+TGG | + | chr5.4:53621070-53621089 | None:intergenic | 45.0% | |
| TCTTGATCTGCTCCATGTCA+GGG | - | chr5.4:53621371-53621390 | MS.gene44811:intron | 45.0% | |
| TGCATCACTGGGATCATTTC+AGG | - | chr5.4:53619614-53619633 | MS.gene44811:intron | 45.0% | |
| TGGTGATCGATTATCAGCTG+AGG | - | chr5.4:53621969-53621988 | MS.gene44811:CDS | 45.0% | |
| ! | CCCTCGTTGTGGATTATTGT+TGG | - | chr5.4:53620570-53620589 | MS.gene44811:intron | 45.0% |
| ! | TGTGCCAAGATCTTTGGAGA+AGG | - | chr5.4:53621310-53621329 | MS.gene44811:intron | 45.0% |
| !! | GAATTTTGGGGAGTGTGGTT+TGG | - | chr5.4:53619590-53619609 | MS.gene44811:CDS | 45.0% |
| !! | GCCATTTTGCAGTTCCAACA+AGG | - | chr5.4:53621348-53621367 | MS.gene44811:intron | 45.0% |
| !! | TTGGTGAATTTTGGGGAGTG+TGG | - | chr5.4:53619585-53619604 | MS.gene44811:CDS | 45.0% |
| !!! | GTTGTTTTGAGGACGAGTGA+CGG | + | chr5.4:53620875-53620894 | None:intergenic | 45.0% |
| AACTTTCCCATGTGGCGCTT+GGG | + | chr5.4:53621101-53621120 | None:intergenic | 50.0% | |
| AATCATTCCCAAGCGCCACA+TGG | - | chr5.4:53621091-53621110 | MS.gene44811:intron | 50.0% | |
| AGGACGAGTGACGGTGTAAT+GGG | + | chr5.4:53620866-53620885 | None:intergenic | 50.0% | |
| ATCATTCCCAAGCGCCACAT+GGG | - | chr5.4:53621092-53621111 | MS.gene44811:intron | 50.0% | |
| CCCACAGCTGTTGCTAATGA+AGG | - | chr5.4:53621066-53621085 | MS.gene44811:intron | 50.0% | |
| CTCCAAAGATCTTGGCACAG+CGG | + | chr5.4:53621309-53621328 | None:intergenic | 50.0% | |
| GGAGCAGATCAAGACCTTGT+TGG | + | chr5.4:53621365-53621384 | None:intergenic | 50.0% | |
| GGGCAAGGAAGTTAGGTGAT+GGG | + | chr5.4:53621239-53621258 | None:intergenic | 50.0% | |
| GTCTTGATCTGCTCCATGTC+AGG | - | chr5.4:53621370-53621389 | MS.gene44811:intron | 50.0% | |
| TCCAGCTGAACTTTCCCATG+TGG | + | chr5.4:53621109-53621128 | None:intergenic | 50.0% | |
| TGGGCAAGGAAGTTAGGTGA+TGG | + | chr5.4:53621240-53621259 | None:intergenic | 50.0% | |
| TTCGTCAAGCTCTCAGCAGT+AGG | + | chr5.4:53620983-53621002 | None:intergenic | 50.0% | |
| ! | TGTGGTTTGGCTGCATCACT+GGG | - | chr5.4:53619603-53619622 | MS.gene44811:CDS | 50.0% |
| GAACTTTCCCATGTGGCGCT+TGG | + | chr5.4:53621102-53621121 | None:intergenic | 55.0% | |
| GAGGACGAGTGACGGTGTAA+TGG | + | chr5.4:53620867-53620886 | None:intergenic | 55.0% | |
| GCAGCAAACTGTGGACGACT+GGG | + | chr5.4:53621034-53621053 | None:intergenic | 55.0% | |
| GCCACATGGGAAAGTTCAGC+TGG | - | chr5.4:53621105-53621124 | MS.gene44811:intron | 55.0% | |
| TCTCAGCAGTAGGCTCCATG+AGG | + | chr5.4:53620973-53620992 | None:intergenic | 55.0% | |
| TGCAGCAAACTGTGGACGAC+TGG | + | chr5.4:53621035-53621054 | None:intergenic | 55.0% | |
| TGCCGCTGTGCCAAGATCTT+TGG | - | chr5.4:53621304-53621323 | MS.gene44811:intron | 55.0% | |
| TGTGAAGGGGAAACCCTTGG+AGG | + | chr5.4:53620712-53620731 | None:intergenic | 55.0% | |
| ! | GCAAGTGCTGCAGCAAACTG+TGG | + | chr5.4:53621043-53621062 | None:intergenic | 55.0% |
| ! | GGACGACTGGGATCTGAAGT+TGG | + | chr5.4:53621022-53621041 | None:intergenic | 55.0% |
| ! | GTGTGGTTTGGCTGCATCAC+TGG | - | chr5.4:53619602-53619621 | MS.gene44811:CDS | 55.0% |
| CCATGTCAGGGACTCTGCTG+AGG | - | chr5.4:53621383-53621402 | MS.gene44811:intron | 60.0% | |
| CCTAACAAGGACCAAGCGGC+AGG | - | chr5.4:53619507-53619526 | MS.gene44811:CDS | 60.0% | |
| CCTCAGCAGAGTCCCTGACA+TGG | + | chr5.4:53621386-53621405 | None:intergenic | 60.0% | |
| ! | CCTGCCGCTTGGTCCTTGTT+AGG | + | chr5.4:53619510-53619529 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 53619483 | 53622044 | 53619483 | ID=MS.gene44811 |
| chr5.4 | mRNA | 53619483 | 53622044 | 53619483 | ID=MS.gene44811.t1;Parent=MS.gene44811 |
| chr5.4 | exon | 53621891 | 53622044 | 53621891 | ID=MS.gene44811.t1.exon1;Parent=MS.gene44811.t1 |
| chr5.4 | CDS | 53621891 | 53622044 | 53621891 | ID=cds.MS.gene44811.t1;Parent=MS.gene44811.t1 |
| chr5.4 | exon | 53621627 | 53621764 | 53621627 | ID=MS.gene44811.t1.exon2;Parent=MS.gene44811.t1 |
| chr5.4 | CDS | 53621627 | 53621764 | 53621627 | ID=cds.MS.gene44811.t1;Parent=MS.gene44811.t1 |
| chr5.4 | exon | 53619483 | 53619631 | 53619483 | ID=MS.gene44811.t1.exon3;Parent=MS.gene44811.t1 |
| chr5.4 | CDS | 53619483 | 53619631 | 53619483 | ID=cds.MS.gene44811.t1;Parent=MS.gene44811.t1 |
| Gene Sequence |
| Protein sequence |
