AlfalfaGEDB | MS.gene44811

M. sativa cultivar XinJiangDaYe / MS.gene44811

KEGG: K03537
GO: GO:0003674 GO:0003824 GO:0004518 GO:0004540 GO:0006139 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:1901360
PFAM: PF01900.22

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene44811.t1	XP_003615482.1	100	146	0	0	1	146	8	153	6.00E-75	290

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene44811.t1	Q6AWV1	59.9	147	54	2	1	146	9	151	5.2e-43	175.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene44811.t1	G7K656	100.0	146	0	0	1	146	8	153	4.3e-75	290.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049368	MS.gene44811	0.816411	5.61E-52	-1.69E-46
MS.gene049821	MS.gene44811	0.836114	1.13E-56	-1.69E-46
MS.gene049850	MS.gene44811	0.804024	2.63E-49	-1.69E-46
MS.gene050237	MS.gene44811	0.826249	3.01E-54	-1.69E-46
MS.gene05134	MS.gene44811	0.803384	3.58E-49	-1.69E-46
MS.gene051719	MS.gene44811	0.80042	1.45E-48	-1.69E-46
MS.gene052239	MS.gene44811	-0.80279	4.75E-49	-1.69E-46
MS.gene052519	MS.gene44811	0.800947	1.13E-48	-1.69E-46
MS.gene053079	MS.gene44811	0.805992	1.02E-49	-1.69E-46
MS.gene05364	MS.gene44811	0.827096	1.89E-54	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene44811.t1	MTR_5g068650	100.000	146	0	0	1	146	8	153	7.84e-108	303

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene44811.t1	AT1G04635	59.864	147	54	2	1	146	9	151	4.14e-61	185

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Find 26 sgRNAs with CRISPR-Local

Find 187 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATAGATACATGGTGATGG+AGG	0.605272	5.4:-53622032	None:intergenic
AATACTTCTGACCATTGTGA+TGG	0.548904	5.4:+53621667	None:intergenic
AGTATGGGCTTCCATCACAA+TGG	0.688002	5.4:-53621678	MS.gene44811:CDS
ATCACAATGGTCAGAAGTAT+TGG	0.427749	5.4:-53621665	MS.gene44811:CDS
ATGATACACACATTAGTGAT+TGG	0.422141	5.4:+53621728	None:intergenic
ATTTGAGCAGTTCAAACTTA+TGG	0.275431	5.4:-53619560	MS.gene44811:CDS
CAAGCAAATTAAACACAACT+GGG	0.605699	5.4:+53621636	None:intergenic
CACTAATGTGTGTATCATTA+GGG	0.353776	5.4:-53621723	MS.gene44811:CDS
CCTAACAAGGACCAAGCGGC+AGG	0.534913	5.4:-53621998	MS.gene44811:CDS
CCTGCCGCTTGGTCCTTGTT+AGG	0.320650	5.4:+53621998	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGATGGTATCATGCATA+TGG	+	chr5.4:53621812-53621831	None:intergenic	30.0%
AAGAAATAATTCCCAAAACC+GGG	-	chr5.4:53620613-53620632	MS.gene44811:intron	30.0%
AGTAATAGATTTCAACCTTG+AGG	+	chr5.4:53620903-53620922	None:intergenic	30.0%
ATAGATGACATGACTTTGTT+TGG	-	chr5.4:53621513-53621532	MS.gene44811:intron	30.0%
ATAGCGTGAGTAATAGTAAA+TGG	-	chr5.4:53620305-53620324	MS.gene44811:intron	30.0%
ATGATACACACATTAGTGAT+TGG	+	chr5.4:53619780-53619799	None:intergenic	30.0%
ATTTCTCTATAGTCTATCTC+GGG	+	chr5.4:53620364-53620383	None:intergenic	30.0%
ATTTGAGCAGTTCAAACTTA+TGG	-	chr5.4:53621945-53621964	MS.gene44811:CDS	30.0%
CAAAAAAGGAAGGAGAAAAA+AGG	+	chr5.4:53619931-53619950	None:intergenic	30.0%
CAAGCAAATTAAACACAACT+GGG	+	chr5.4:53619872-53619891	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.4	gene	53619483	53622044	53619483	ID=MS.gene44811
chr5.4	mRNA	53619483	53622044	53619483	ID=MS.gene44811.t1;Parent=MS.gene44811
chr5.4	exon	53621891	53622044	53621891	ID=MS.gene44811.t1.exon1;Parent=MS.gene44811.t1
chr5.4	CDS	53621891	53622044	53621891	ID=cds.MS.gene44811.t1;Parent=MS.gene44811.t1
chr5.4	exon	53621627	53621764	53621627	ID=MS.gene44811.t1.exon2;Parent=MS.gene44811.t1
chr5.4	CDS	53621627	53621764	53621627	ID=cds.MS.gene44811.t1;Parent=MS.gene44811.t1
chr5.4	exon	53619483	53619631	53619483	ID=MS.gene44811.t1.exon3;Parent=MS.gene44811.t1
chr5.4	CDS	53619483	53619631	53619483	ID=cds.MS.gene44811.t1;Parent=MS.gene44811.t1

Gene Sequence

>MS.gene44811

ATGGTGATGGAGGTTTTTATGAATCCTAACAAGGACCAAGCGGCAGGTGATTCTATTATAATTACACAGTTTAATGTCTCCAATGCTATAAAAGATAGCATCTTGGTGAATTTTGGGGAGTGTGGTTTGGCTGCATCACTGGGATCATTTCAGGGTGAGTAGTTACACAAATTGCTGATAACTCTTCTCCTATTGTTTTCCTTCTGTTTAGTAATTTTCTCATGTTAAATGCTATTTCTCATCTTTGATAATTTTTTCACTTTTGGGTCGGTGTGTGCAGTCAAGTATGTGAATCCAATCACTAATGTGTGTATCATTAGGGCTTCAAGAGAAGAGTATGAAAAAGTATGGGCTTCCATCACAATGGTCAGAAGTATTGGAAATTTCCCAGTTGTGTTTAATTTGCTTGATTTATCTGGTAAGAGCAAATACTGCATGTTGGCATCCTTTTTTCTCCTTCCTTTTTTGCTGTGAACTCCTTTATGACAATATTGGAATAACAGAAAAAAGGGGTGTGTTAGATACTATTTTCATGGAAAAGAAAATTGAGAAATTCTGGTAGTTTTGTATCATGTCATTTAGTTTGATATATTATCAAGTCCTGTTATGTAGAAGATACAGAACATTACTTACTTATGTCAGAAAACCGATGCTTGTTATCCTGATCTATCACTCATTTGCAAAACTATTGTTTATTGAATTCCTTCATATTTCATAACCAGTATGTTGTCCCCTCATCTTGGATTATCATTAACGGTGAAACATATCACCAAATAAACATTATACAAAATATGAAATGAAGGTCAACACATCAGGCGACCGATAGCGTGAGTAATAGTAAATGGGTGTACCCTGAGATAGACTTTTCTTTAATGGACCCCGAGATAGACTATAGAGAAATATTTGTGCTTTTAGTTTCTCTGTAATCATAAAGTCCTGGTATATAGATTTCTCAAAAAAAGTCCTGTTATATAGAGGTAATAGAAGAAACAGAACATTAGAAAACCAATGCTTATCATCCTGTCACTTGAATCTATCATTCAGCCACACAATTGAAAGCCTTCGTATTTCATAACCAATATTTGTTCCCTCGTTGTGGATTATTGTTGGGAACACCTTTCTTTTGGTATAAGAAATAATTCCCAAAACCGGGCAGAATTGAATAGAATGAGGAATACTGCTATTGAAAGGTTGAGAAATGATAAAGAGAATAGGAGATAATCTCTCCTCCAAGGGTTTCCCCTTCACAATAGAGTCACTACTCTATTCACTAAACTTTACAAATATTCAATAATTGATCTTTATCATTGTATTCTCCTATTTATACATATAGACTTTTAATAACCTCAACTAACTACCAACTCTTAACTACTCTAGTTACCCATTACACCGTCACTCGTCCTCAAAACAACCTTATCCTCAAGGTTGAAATCTATTACTGTCTTCTTGTTCCATTGGGTGCAGAGAAAAAAAAAATTAAAAATTCTCCTCATGGAGCCTACTGCTGAGAGCTTGACGAACCAAATTTTATCTCAACCAACTTCAGATCCCAGTCGTCCACAGTTTGCTGCAGCACTTGCACACCCACAGCTGTTGCTAATGAAGGAGAATCATTCCCAAGCGCCACATGGGAAAGTTCAGCTGGACAGTGAACTCCAACTTCTGCAATTATGCACTGATTTTGCTTCTTCCTTGTTTTTCAGCATTGTTTGCAATGACCTATCTGATTTTAAATTATTTCCATTGAATTAGACCCATCACCTAACTTCCTTGCCCAAAAACAAGATTATTTTTGGCTATCTCCTTCATAAATGTTCTCTTTGCCGCTGTGCCAAGATCTTTGGAGAAGGTTGTGCCTCTAACTTGCCATTTTGCAGTTCCAACAAGGTCTTGATCTGCTCCATGTCAGGGACTCTGCTGAGGCTTTCGTTTCTCTGTAATAATGATGGATAACCATCGCTAAAAAGAATGATCAACACTATGTTTTTAGGTTACAACAATTCAGGTAAAATACATGAACATCTAAACTAATAGATGACATGACTTTGTTTGGCACAAAGCTTCCTATGAAGAGAGGGATGAAATTTTTGGCAGAAAATTGGTTCATAGTAGTTTGATATGGTTTGGTAGGGACTGCATTTTGTAATATTTTGATATAGATTGCATCACCTTTCTTACTTTTCAATTAATAGGAACTCATTCTATCCTTGATGCATCACCCTATCATGTTTTGCATATTACTTTGATTTACAGTACAGTGTGTTCACCATCATCTGAATGAAACTCTGACCTTTTCTCTGTTTTATCAATTTGATCTTGCCATTGGCCATATGCATGATACCATCTTTTCTTTCCCTCAAAGATTCGTTCATGAACATATAAGTCCTGATATGAAATTGTACCTTTGGTTCAGGAAATTTACAGGCTACTAAGACTGCTGCATTAAAGTGTGAGGAAGCAAAATTTGAGCAGTTCAAACTTATGGTTGGTGATCGATTATCAGCTGAGGATACACATCGCATGAATAATCATCTTGCTAAGATCGAAGTTTTGGAGCATTGA

Protein sequence

>MS.gene44811.t1

MVMEVFMNPNKDQAAGDSIIITQFNVSNAIKDSILVNFGECGLAASLGSFQVKYVNPITNVCIIRASREEYEKVWASITMVRSIGNFPVVFNLLDLSGNLQATKTAALKCEEAKFEQFKLMVGDRLSAEDTHRMNNHLAKIEVLEH