Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45611.t1 | XP_013457509.1 | 98.9 | 473 | 5 | 0 | 1 | 473 | 1 | 473 | 2.90E-272 | 947.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45611.t1 | Q00257 | 75.7 | 481 | 103 | 4 | 1 | 473 | 1 | 475 | 1.0e-212 | 740.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45611.t1 | A0A072V097 | 98.9 | 473 | 5 | 0 | 1 | 473 | 1 | 473 | 2.1e-272 | 947.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene55883 | MS.gene45611 | PPI |
| MS.gene049022 | MS.gene45611 | PPI |
| MS.gene55882 | MS.gene45611 | PPI |
| MS.gene20160 | MS.gene45611 | PPI |
| MS.gene45611 | MS.gene006415 | PPI |
| MS.gene006416 | MS.gene45611 | PPI |
| MS.gene06177 | MS.gene45611 | PPI |
| MS.gene20161 | MS.gene45611 | PPI |
| MS.gene75059 | MS.gene45611 | PPI |
| MS.gene064035 | MS.gene45611 | PPI |
| MS.gene66342 | MS.gene45611 | PPI |
| MS.gene06176 | MS.gene45611 | PPI |
| MS.gene030294 | MS.gene45611 | PPI |
| MS.gene66343 | MS.gene45611 | PPI |
| MS.gene049021 | MS.gene45611 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45611.t1 | MTR_4g097540 | 98.943 | 473 | 5 | 0 | 1 | 473 | 1 | 473 | 0.0 | 980 |
| MS.gene45611.t1 | MTR_5g015020 | 83.195 | 482 | 68 | 5 | 1 | 471 | 1 | 480 | 0.0 | 831 |
| MS.gene45611.t1 | MTR_3g103550 | 70.139 | 432 | 122 | 3 | 3 | 433 | 1 | 426 | 0.0 | 659 |
| MS.gene45611.t1 | MTR_6g091760 | 60.557 | 431 | 160 | 4 | 4 | 434 | 14 | 434 | 0.0 | 553 |
| MS.gene45611.t1 | MTR_8g098930 | 55.876 | 451 | 187 | 4 | 2 | 450 | 10 | 450 | 0.0 | 550 |
| MS.gene45611.t1 | MTR_8g101750 | 58.124 | 437 | 165 | 5 | 4 | 439 | 12 | 431 | 0.0 | 533 |
| MS.gene45611.t1 | MTR_8g028600 | 54.233 | 437 | 190 | 2 | 2 | 438 | 9 | 435 | 0.0 | 518 |
| MS.gene45611.t1 | MTR_7g079080 | 52.644 | 435 | 193 | 3 | 2 | 434 | 9 | 432 | 3.92e-176 | 503 |
| MS.gene45611.t1 | MTR_8g101820 | 54.233 | 437 | 169 | 6 | 4 | 439 | 12 | 418 | 2.02e-169 | 483 |
| MS.gene45611.t1 | MTR_6g463260 | 45.747 | 435 | 224 | 5 | 4 | 437 | 104 | 527 | 6.39e-146 | 428 |
| MS.gene45611.t1 | MTR_7g079080 | 52.367 | 338 | 148 | 3 | 99 | 434 | 1 | 327 | 4.59e-133 | 389 |
| MS.gene45611.t1 | MTR_5g011400 | 41.687 | 415 | 232 | 3 | 16 | 430 | 84 | 488 | 6.59e-125 | 373 |
| MS.gene45611.t1 | MTR_2g090730 | 81.720 | 93 | 13 | 1 | 57 | 149 | 12 | 100 | 4.03e-49 | 167 |
| MS.gene45611.t1 | MTR_8g023140 | 23.099 | 342 | 234 | 13 | 112 | 433 | 182 | 514 | 3.08e-14 | 75.5 |
| MS.gene45611.t1 | MTR_5g033230 | 25.000 | 244 | 163 | 9 | 24 | 253 | 35 | 272 | 4.87e-14 | 74.3 |
| MS.gene45611.t1 | MTR_5g033230 | 26.404 | 178 | 123 | 6 | 79 | 253 | 100 | 272 | 6.00e-14 | 74.3 |
| MS.gene45611.t1 | MTR_4g011820 | 23.315 | 356 | 220 | 14 | 87 | 431 | 69 | 382 | 1.56e-12 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45611.t1 | AT4G37770 | 71.488 | 477 | 124 | 4 | 1 | 473 | 1 | 469 | 0.0 | 711 |
| MS.gene45611.t1 | AT3G49700 | 73.941 | 472 | 110 | 4 | 1 | 466 | 1 | 465 | 0.0 | 708 |
| MS.gene45611.t1 | AT5G65800 | 73.305 | 472 | 113 | 5 | 1 | 466 | 1 | 465 | 0.0 | 700 |
| MS.gene45611.t1 | AT2G22810 | 69.023 | 481 | 134 | 3 | 1 | 473 | 1 | 474 | 0.0 | 688 |
| MS.gene45611.t1 | AT4G08040 | 66.450 | 462 | 145 | 3 | 3 | 463 | 1 | 453 | 0.0 | 651 |
| MS.gene45611.t1 | AT4G26200 | 58.565 | 432 | 170 | 3 | 4 | 434 | 18 | 441 | 0.0 | 533 |
| MS.gene45611.t1 | AT3G61510 | 53.687 | 434 | 189 | 3 | 2 | 435 | 9 | 430 | 0.0 | 515 |
| MS.gene45611.t1 | AT1G01480 | 51.592 | 471 | 212 | 4 | 3 | 464 | 11 | 474 | 5.96e-179 | 511 |
| MS.gene45611.t1 | AT4G11280 | 53.118 | 433 | 194 | 2 | 1 | 433 | 12 | 435 | 5.61e-177 | 506 |
| MS.gene45611.t1 | AT1G01480 | 51.733 | 375 | 165 | 4 | 99 | 464 | 1 | 368 | 1.07e-139 | 407 |
| MS.gene45611.t1 | AT5G51690 | 43.823 | 429 | 230 | 4 | 4 | 431 | 69 | 487 | 1.31e-138 | 408 |
| MS.gene45611.t1 | AT1G62960 | 42.459 | 431 | 230 | 8 | 4 | 431 | 132 | 547 | 2.41e-125 | 376 |
| MS.gene45611.t1 | AT5G51690 | 43.194 | 382 | 199 | 4 | 50 | 431 | 1 | 364 | 3.82e-120 | 356 |
| MS.gene45611.t1 | AT1G23310 | 23.868 | 243 | 167 | 8 | 24 | 253 | 35 | 272 | 1.33e-14 | 76.3 |
| MS.gene45611.t1 | AT1G23310 | 23.868 | 243 | 167 | 8 | 24 | 253 | 35 | 272 | 2.18e-14 | 75.9 |
| MS.gene45611.t1 | AT1G70580 | 23.457 | 243 | 168 | 8 | 24 | 253 | 35 | 272 | 5.80e-14 | 74.3 |
| MS.gene45611.t1 | AT1G70580 | 23.457 | 243 | 168 | 8 | 24 | 253 | 35 | 272 | 5.80e-14 | 74.3 |
| MS.gene45611.t1 | AT1G70580 | 23.457 | 243 | 168 | 8 | 24 | 253 | 35 | 272 | 5.80e-14 | 74.3 |
| MS.gene45611.t1 | AT1G70580 | 23.457 | 243 | 168 | 8 | 24 | 253 | 35 | 272 | 5.80e-14 | 74.3 |
| MS.gene45611.t1 | AT1G77670 | 24.000 | 375 | 238 | 16 | 71 | 431 | 92 | 433 | 2.73e-12 | 68.9 |
| MS.gene45611.t1 | AT2G24850 | 23.423 | 333 | 212 | 12 | 114 | 433 | 117 | 419 | 5.93e-11 | 64.7 |
Find 89 sgRNAs with CRISPR-Local
Find 110 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATTACTCCTTTGACTTTA+AGG | 0.007055 | 8.4:+25063865 | None:intergenic |
| ACAAATATTATCAGCGTCTT+TGG | 0.227556 | 8.4:+25063653 | None:intergenic |
| CGTCAGAACAAACTTGTTTC+GGG | 0.234675 | 8.4:-25063408 | MS.gene45611:CDS |
| CAAGACTCTTCATACTTCTT+AGG | 0.254225 | 8.4:-25064614 | MS.gene45611:CDS |
| GAGAGCAAGTTCACGGAATA+TGG | 0.287004 | 8.4:+25064325 | None:intergenic |
| GTTACTTACCCTGGATAATA+AGG | 0.296953 | 8.4:+25064119 | None:intergenic |
| ACCTGGCAAACCCAAGTCTT+TGG | 0.309354 | 8.4:+25063602 | None:intergenic |
| ACGTCAGAACAAACTTGTTT+CGG | 0.329027 | 8.4:-25063409 | MS.gene45611:CDS |
| TCCATGACGCTGATAAAGTT+TGG | 0.329249 | 8.4:+25063708 | None:intergenic |
| ACAAGCATTGGTAGATTTCA+TGG | 0.337094 | 8.4:-25064270 | MS.gene45611:CDS |
| GCTTTCCAAGCAGCTAATTC+CGG | 0.349870 | 8.4:+25063374 | None:intergenic |
| CCCATTTGAATAATTCCTTT+AGG | 0.350296 | 8.4:+25064548 | None:intergenic |
| TTCGGTTACTTGAAAGTTGT+TGG | 0.352316 | 8.4:+25063929 | None:intergenic |
| CTTCCTACTCCTTATTATCC+AGG | 0.362035 | 8.4:-25064128 | MS.gene45611:CDS |
| GAGTCCACTGGCAATGTTAA+TGG | 0.369447 | 8.4:-25063126 | MS.gene45611:CDS |
| GAGGAATGCTTCTCCTTTCT+CGG | 0.379843 | 8.4:+25064151 | None:intergenic |
| TCCTAAAGGAATTATTCAAA+TGG | 0.384178 | 8.4:-25064549 | MS.gene45611:CDS |
| TCCAAAGACTTGGGTTTGCC+AGG | 0.387995 | 8.4:-25063603 | MS.gene45611:CDS |
| CAACACATTTGAAGCTGAAA+AGG | 0.396231 | 8.4:-25063304 | MS.gene45611:CDS |
| TTGAAGCTGAAAAGGAACTA+TGG | 0.401706 | 8.4:-25063296 | MS.gene45611:CDS |
| TTGGAGCTTGTGCAATGTAT+TGG | 0.402052 | 8.4:+25063948 | None:intergenic |
| GTGGTGCCTAGCGGGTTTGA+TGG | 0.413274 | 8.4:+25063834 | None:intergenic |
| GCCGAAGCTTGACATCTTTG+TGG | 0.431268 | 8.4:+25063530 | None:intergenic |
| CTACAGTCTTTCCAAAGACT+TGG | 0.433037 | 8.4:-25063613 | MS.gene45611:CDS |
| GATTTCATGGCTGAAATTAG+AGG | 0.438990 | 8.4:-25064257 | MS.gene45611:CDS |
| TACCTTCTTTCCTCCATGCT+TGG | 0.440838 | 8.4:-25063486 | MS.gene45611:CDS |
| AGAGATCTTAAGTGGAGAAC+TGG | 0.441917 | 8.4:-25063984 | MS.gene45611:CDS |
| TGCTTGTTGCAATGCTTGTT+CGG | 0.447826 | 8.4:+25063911 | None:intergenic |
| GCTAAGAATCCAGATGCATC+TGG | 0.449521 | 8.4:-25064368 | MS.gene45611:CDS |
| TTGACATTGTGGTGCCTAGC+GGG | 0.450378 | 8.4:+25063826 | None:intergenic |
| GATTTGATAGAGATCTTAAG+TGG | 0.457172 | 8.4:-25063992 | MS.gene45611:CDS |
| AGCTGCTTGGAAAGCAATGC+AGG | 0.457790 | 8.4:-25063366 | MS.gene45611:CDS |
| ACCAATGCTTGTTTGAATGC+TGG | 0.468828 | 8.4:+25064281 | None:intergenic |
| GGATTGTGAACATTATCGTA+TGG | 0.469336 | 8.4:+25064569 | None:intergenic |
| ATGGCGCCAACGCGGAAACC+TGG | 0.479641 | 8.4:+25063585 | None:intergenic |
| CTTTGAAACTAGCAATGAAA+AGG | 0.480723 | 8.4:-25063167 | MS.gene45611:CDS |
| GAGAAATTTACTCACTAAGT+GGG | 0.491942 | 8.4:-25063082 | MS.gene45611:CDS |
| CCTAAAGGAATTATTCAAAT+GGG | 0.495148 | 8.4:-25064548 | MS.gene45611:CDS |
| CTAAGAAGTATGAAGAGTCT+TGG | 0.495354 | 8.4:+25064615 | None:intergenic |
| GCTTTCGTTGTTGAGTCCAC+TGG | 0.495466 | 8.4:-25063138 | MS.gene45611:CDS |
| ACTCTTCATACTTCTTAGGA+TGG | 0.496264 | 8.4:-25064610 | MS.gene45611:CDS |
| AGAGAAATTTACTCACTAAG+TGG | 0.501044 | 8.4:-25063083 | MS.gene45611:CDS |
| CCTTAAAGTCAAAGGAGTAA+TGG | 0.507013 | 8.4:-25063865 | MS.gene45611:CDS |
| GATAATGTTCACAATCCTAA+AGG | 0.507661 | 8.4:-25064563 | MS.gene45611:CDS |
| GATTGTGAACATTATCGTAT+GGG | 0.512439 | 8.4:+25064570 | None:intergenic |
| TACAGTCTTTCCAAAGACTT+GGG | 0.512758 | 8.4:-25063612 | MS.gene45611:CDS |
| CTGGCATGCCATGGTAGTCT+TGG | 0.514145 | 8.4:+25064300 | None:intergenic |
| TGGTGCCTAGCGGGTTTGAT+GGG | 0.518811 | 8.4:+25063835 | None:intergenic |
| TAATTCACTCCTTGACATTG+TGG | 0.520906 | 8.4:+25063815 | None:intergenic |
| GCATCTGGATTCAAAAGAGA+TGG | 0.523681 | 8.4:-25064353 | MS.gene45611:CDS |
| CTCTTCATACTTCTTAGGAT+GGG | 0.532693 | 8.4:-25064609 | MS.gene45611:CDS |
| CACCAAGCATGGAGGAAAGA+AGG | 0.533120 | 8.4:+25063484 | None:intergenic |
| TTCCTACTCCTTATTATCCA+GGG | 0.533548 | 8.4:-25064127 | MS.gene45611:intron |
| GCCAGCATTCAAACAAGCAT+TGG | 0.538139 | 8.4:-25064282 | MS.gene45611:CDS |
| GGTTTGCCAGGTTTCCGCGT+TGG | 0.538215 | 8.4:-25063591 | MS.gene45611:CDS |
| GCCACAAAGATGTCAAGCTT+CGG | 0.545209 | 8.4:-25063531 | MS.gene45611:CDS |
| CTTGGAAGAGAGCAAGTTCA+CGG | 0.552418 | 8.4:+25064318 | None:intergenic |
| GTTTGAATGCTGGCATGCCA+TGG | 0.557856 | 8.4:+25064291 | None:intergenic |
| TCTTGTCATTGTACAGAACC+AGG | 0.559141 | 8.4:-25063228 | MS.gene45611:CDS |
| AAAAGCCGGAATTAGCTGCT+TGG | 0.561044 | 8.4:-25063379 | MS.gene45611:CDS |
| GCGGTGAGAACTATGTGGTT+GGG | 0.564851 | 8.4:+25064215 | None:intergenic |
| GTGAAATGTTTAAACCAACT+TGG | 0.565975 | 8.4:+25063259 | None:intergenic |
| AAGAAAATAGTGTACCAAGT+TGG | 0.566563 | 8.4:-25063273 | MS.gene45611:CDS |
| TCCAAACTTTATCAGCGTCA+TGG | 0.567045 | 8.4:-25063709 | MS.gene45611:CDS |
| AAAGCAACTTGTAATAGTCA+TGG | 0.582182 | 8.4:-25064638 | MS.gene45611:CDS |
| ATAAGCGATGAGATTTACTC+CGG | 0.583054 | 8.4:-25063747 | MS.gene45611:CDS |
| AAACGCAACCTTAAAGTCAA+AGG | 0.585930 | 8.4:-25063873 | MS.gene45611:CDS |
| TGCGGTGAGAACTATGTGGT+TGG | 0.600293 | 8.4:+25064214 | None:intergenic |
| AAACACACACGAAACCAACC+TGG | 0.602737 | 8.4:+25063210 | None:intergenic |
| GTCATTGTACAGAACCAGGT+TGG | 0.607425 | 8.4:-25063224 | MS.gene45611:CDS |
| AACCACATAGTTCTCACCGC+AGG | 0.611056 | 8.4:-25064212 | MS.gene45611:CDS |
| CTGGATAATAAGGAGTAGGA+AGG | 0.613137 | 8.4:+25064129 | None:intergenic |
| GATAATAAGGAGTAGGAAGG+AGG | 0.616132 | 8.4:+25064132 | None:intergenic |
| TGATCAACGTGATCAACAAG+AGG | 0.629251 | 8.4:-25063040 | MS.gene45611:CDS |
| GTTGGTTTAAACATTTCACC+TGG | 0.630672 | 8.4:-25063255 | MS.gene45611:CDS |
| AACGTGATCAACAAGAGGAA+CGG | 0.630998 | 8.4:-25063035 | MS.gene45611:CDS |
| TACCCTGGATAATAAGGAGT+AGG | 0.632955 | 8.4:+25064125 | None:intergenic |
| GTCAGAACAAACTTGTTTCG+GGG | 0.633937 | 8.4:-25063407 | MS.gene45611:CDS |
| CGCTAGGCACCACAATGTCA+AGG | 0.634181 | 8.4:-25063824 | MS.gene45611:CDS |
| AACACCATTAACATTGCCAG+TGG | 0.635347 | 8.4:+25063122 | None:intergenic |
| CTTGACATTGTGGTGCCTAG+CGG | 0.638500 | 8.4:+25063825 | None:intergenic |
| CTTTGTGGCAGCAGCAACAA+CGG | 0.644282 | 8.4:+25063545 | None:intergenic |
| GACGCTGATAAAGTTTGGAG+AGG | 0.645499 | 8.4:+25063713 | None:intergenic |
| ACAAACCCATCAAACCCGCT+AGG | 0.648673 | 8.4:-25063840 | MS.gene45611:CDS |
| CGGAGTAGATGGCGCCAACG+CGG | 0.683650 | 8.4:+25063577 | None:intergenic |
| GCTCTCTTCCAAGACTACCA+TGG | 0.688190 | 8.4:-25064308 | MS.gene45611:CDS |
| ATTTGCTGAAGTAGAACCTG+CGG | 0.695572 | 8.4:+25064196 | None:intergenic |
| GTACAATGACAAGATGAACC+AGG | 0.699733 | 8.4:+25063237 | None:intergenic |
| AACCTGCGGTGAGAACTATG+TGG | 0.788440 | 8.4:+25064210 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAGTACAAATAAATTTTTA+AGG | + | chr8.4:25063239-25063258 | None:intergenic | 10.0% |
| !! | CAAAAGAAAAGAAAAAATAT+TGG | + | chr8.4:25063267-25063286 | None:intergenic | 15.0% |
| ! | CCTAAAGGAATTATTCAAAT+GGG | - | chr8.4:25063140-25063159 | MS.gene45611:CDS | 25.0% |
| ! | TCCTAAAGGAATTATTCAAA+TGG | - | chr8.4:25063139-25063158 | MS.gene45611:CDS | 25.0% |
| AAAGCAACTTGTAATAGTCA+TGG | - | chr8.4:25063050-25063069 | MS.gene45611:CDS | 30.0% | |
| AAGAAAATAGTGTACCAAGT+TGG | - | chr8.4:25064415-25064434 | MS.gene45611:intron | 30.0% | |
| ACAAATATTATCAGCGTCTT+TGG | + | chr8.4:25064038-25064057 | None:intergenic | 30.0% | |
| AGAGAAATTTACTCACTAAG+TGG | - | chr8.4:25064605-25064624 | MS.gene45611:CDS | 30.0% | |
| CCCATTTGAATAATTCCTTT+AGG | + | chr8.4:25063143-25063162 | None:intergenic | 30.0% | |
| GAGAAATTTACTCACTAAGT+GGG | - | chr8.4:25064606-25064625 | MS.gene45611:CDS | 30.0% | |
| GATAATGTTCACAATCCTAA+AGG | - | chr8.4:25063125-25063144 | MS.gene45611:CDS | 30.0% | |
| GATTGTGAACATTATCGTAT+GGG | + | chr8.4:25063121-25063140 | None:intergenic | 30.0% | |
| GATTTGATAGAGATCTTAAG+TGG | - | chr8.4:25063696-25063715 | MS.gene45611:CDS | 30.0% | |
| GTGAAATGTTTAAACCAACT+TGG | + | chr8.4:25064432-25064451 | None:intergenic | 30.0% | |
| ! | AAAAACAATGTTACTTACCC+TGG | + | chr8.4:25063581-25063600 | None:intergenic | 30.0% |
| !! | CAATGCAGGATTATTTTGTT+GGG | - | chr8.4:25064336-25064355 | MS.gene45611:CDS | 30.0% |
| !! | CTTTGAAACTAGCAATGAAA+AGG | - | chr8.4:25064521-25064540 | MS.gene45611:intron | 30.0% |
| !!! | TATTTTGTTGGGTTGATATG+AGG | - | chr8.4:25064347-25064366 | MS.gene45611:CDS | 30.0% |
| AAACGCAACCTTAAAGTCAA+AGG | - | chr8.4:25063815-25063834 | MS.gene45611:CDS | 35.0% | |
| ACTCTTCATACTTCTTAGGA+TGG | - | chr8.4:25063078-25063097 | MS.gene45611:CDS | 35.0% | |
| ATAAGCGATGAGATTTACTC+CGG | - | chr8.4:25063941-25063960 | MS.gene45611:CDS | 35.0% | |
| CAAGACTCTTCATACTTCTT+AGG | - | chr8.4:25063074-25063093 | MS.gene45611:CDS | 35.0% | |
| CCTTAAAGTCAAAGGAGTAA+TGG | - | chr8.4:25063823-25063842 | MS.gene45611:CDS | 35.0% | |
| CTCTTCATACTTCTTAGGAT+GGG | - | chr8.4:25063079-25063098 | MS.gene45611:CDS | 35.0% | |
| GATTTCATGGCTGAAATTAG+AGG | - | chr8.4:25063431-25063450 | MS.gene45611:CDS | 35.0% | |
| GGATTGTGAACATTATCGTA+TGG | + | chr8.4:25063122-25063141 | None:intergenic | 35.0% | |
| GTTACTTACCCTGGATAATA+AGG | + | chr8.4:25063572-25063591 | None:intergenic | 35.0% | |
| TAATTCACTCCTTGACATTG+TGG | + | chr8.4:25063876-25063895 | None:intergenic | 35.0% | |
| TACAGTCTTTCCAAAGACTT+GGG | - | chr8.4:25064076-25064095 | MS.gene45611:intron | 35.0% | |
| TTCCTACTCCTTATTATCCA+GGG | - | chr8.4:25063561-25063580 | MS.gene45611:CDS | 35.0% | |
| TTCGGTTACTTGAAAGTTGT+TGG | + | chr8.4:25063762-25063781 | None:intergenic | 35.0% | |
| TTGAAGCTGAAAAGGAACTA+TGG | - | chr8.4:25064392-25064411 | MS.gene45611:CDS | 35.0% | |
| ! | ACGTCAGAACAAACTTGTTT+CGG | - | chr8.4:25064279-25064298 | MS.gene45611:CDS | 35.0% |
| ! | AGCAACAACGGTATCATTTT+CGG | + | chr8.4:25064134-25064153 | None:intergenic | 35.0% |
| ! | CAACACATTTGAAGCTGAAA+AGG | - | chr8.4:25064384-25064403 | MS.gene45611:CDS | 35.0% |
| ! | CCATTACTCCTTTGACTTTA+AGG | + | chr8.4:25063826-25063845 | None:intergenic | 35.0% |
| ! | CTAAGAAGTATGAAGAGTCT+TGG | + | chr8.4:25063076-25063095 | None:intergenic | 35.0% |
| ! | CTTTTCAGCTTCAAATGTGT+TGG | + | chr8.4:25064386-25064405 | None:intergenic | 35.0% |
| ! | CTTTTGATCTCTTGGAATCA+TGG | - | chr8.4:25063294-25063313 | MS.gene45611:CDS | 35.0% |
| ! | GTTGGTTTAAACATTTCACC+TGG | - | chr8.4:25064433-25064452 | MS.gene45611:intron | 35.0% |
| ! | GTTTTCAGCTAGGTAGTTTT+TGG | + | chr8.4:25064242-25064261 | None:intergenic | 35.0% |
| !! | ACAAGCATTGGTAGATTTCA+TGG | - | chr8.4:25063418-25063437 | MS.gene45611:CDS | 35.0% |
| !! | GCAATGCAGGATTATTTTGT+TGG | - | chr8.4:25064335-25064354 | MS.gene45611:CDS | 35.0% |
| !! | GTCTCTTTAAGTTTTCAGCT+AGG | + | chr8.4:25064252-25064271 | None:intergenic | 35.0% |
| !! | TACTCACTAAGTGGGTTTTT+CGG | - | chr8.4:25064614-25064633 | MS.gene45611:CDS | 35.0% |
| !!! | GAATTTTTTGTCACCAAGCA+TGG | + | chr8.4:25064218-25064237 | None:intergenic | 35.0% |
| AACACCATTAACATTGCCAG+TGG | + | chr8.4:25064569-25064588 | None:intergenic | 40.0% | |
| AACGTGATCAACAAGAGGAA+CGG | - | chr8.4:25064653-25064672 | MS.gene45611:CDS | 40.0% | |
| ACCAATGCTTGTTTGAATGC+TGG | + | chr8.4:25063410-25063429 | None:intergenic | 40.0% | |
| AGAGATCTTAAGTGGAGAAC+TGG | - | chr8.4:25063704-25063723 | MS.gene45611:CDS | 40.0% | |
| CTACAGTCTTTCCAAAGACT+TGG | - | chr8.4:25064075-25064094 | MS.gene45611:intron | 40.0% | |
| CTGGATAATAAGGAGTAGGA+AGG | + | chr8.4:25063562-25063581 | None:intergenic | 40.0% | |
| CTTCCTACTCCTTATTATCC+AGG | - | chr8.4:25063560-25063579 | MS.gene45611:CDS | 40.0% | |
| GATAATAAGGAGTAGGAAGG+AGG | + | chr8.4:25063559-25063578 | None:intergenic | 40.0% | |
| GCATCTGGATTCAAAAGAGA+TGG | - | chr8.4:25063335-25063354 | MS.gene45611:CDS | 40.0% | |
| GTACAATGACAAGATGAACC+AGG | + | chr8.4:25064454-25064473 | None:intergenic | 40.0% | |
| TACCCTGGATAATAAGGAGT+AGG | + | chr8.4:25063566-25063585 | None:intergenic | 40.0% | |
| TCCAAACTTTATCAGCGTCA+TGG | - | chr8.4:25063979-25063998 | MS.gene45611:CDS | 40.0% | |
| TCCATGACGCTGATAAAGTT+TGG | + | chr8.4:25063983-25064002 | None:intergenic | 40.0% | |
| TCTTGTCATTGTACAGAACC+AGG | - | chr8.4:25064460-25064479 | MS.gene45611:intron | 40.0% | |
| TGATCAACGTGATCAACAAG+AGG | - | chr8.4:25064648-25064667 | MS.gene45611:CDS | 40.0% | |
| TTGGAGCTTGTGCAATGTAT+TGG | + | chr8.4:25063743-25063762 | None:intergenic | 40.0% | |
| ! | ATGTTTTGTCTTGCCGAGAA+AGG | - | chr8.4:25063524-25063543 | MS.gene45611:CDS | 40.0% |
| ! | ATTTGCTGAAGTAGAACCTG+CGG | + | chr8.4:25063495-25063514 | None:intergenic | 40.0% |
| ! | CGTCAGAACAAACTTGTTTC+GGG | - | chr8.4:25064280-25064299 | MS.gene45611:CDS | 40.0% |
| ! | CTTTTGAATCCAGATGCATC+TGG | + | chr8.4:25063332-25063351 | None:intergenic | 40.0% |
| ! | GGTATCATTTTCGGAGTAGA+TGG | + | chr8.4:25064125-25064144 | None:intergenic | 40.0% |
| ! | GTCAGAACAAACTTGTTTCG+GGG | - | chr8.4:25064281-25064300 | MS.gene45611:CDS | 40.0% |
| ! | TGCTTGTTGCAATGCTTGTT+CGG | + | chr8.4:25063780-25063799 | None:intergenic | 40.0% |
| !!! | TTTTTTGTCACCAAGCATGG+AGG | + | chr8.4:25064215-25064234 | None:intergenic | 40.0% |
| AAAAGCCGGAATTAGCTGCT+TGG | - | chr8.4:25064309-25064328 | MS.gene45611:CDS | 45.0% | |
| AAACACACACGAAACCAACC+TGG | + | chr8.4:25064481-25064500 | None:intergenic | 45.0% | |
| CTTGGAAGAGAGCAAGTTCA+CGG | + | chr8.4:25063373-25063392 | None:intergenic | 45.0% | |
| GACGCTGATAAAGTTTGGAG+AGG | + | chr8.4:25063978-25063997 | None:intergenic | 45.0% | |
| GAGAGCAAGTTCACGGAATA+TGG | + | chr8.4:25063366-25063385 | None:intergenic | 45.0% | |
| GAGGAATGCTTCTCCTTTCT+CGG | + | chr8.4:25063540-25063559 | None:intergenic | 45.0% | |
| GAGTCCACTGGCAATGTTAA+TGG | - | chr8.4:25064562-25064581 | MS.gene45611:CDS | 45.0% | |
| GCCACAAAGATGTCAAGCTT+CGG | - | chr8.4:25064157-25064176 | MS.gene45611:CDS | 45.0% | |
| GCCAGCATTCAAACAAGCAT+TGG | - | chr8.4:25063406-25063425 | MS.gene45611:CDS | 45.0% | |
| GCTAAGAATCCAGATGCATC+TGG | - | chr8.4:25063320-25063339 | MS.gene45611:CDS | 45.0% | |
| GCTTTCCAAGCAGCTAATTC+CGG | + | chr8.4:25064317-25064336 | None:intergenic | 45.0% | |
| GTCATTGTACAGAACCAGGT+TGG | - | chr8.4:25064464-25064483 | MS.gene45611:intron | 45.0% | |
| GTTTCGGGGTTACAAAAAGC+CGG | - | chr8.4:25064295-25064314 | MS.gene45611:CDS | 45.0% | |
| TACCTTCTTTCCTCCATGCT+TGG | - | chr8.4:25064202-25064221 | MS.gene45611:CDS | 45.0% | |
| TGGAGAGGAAAAAACAGTGC+CGG | + | chr8.4:25063963-25063982 | None:intergenic | 45.0% | |
| ! | GCAGCTCTCTTTTGATCTCT+TGG | - | chr8.4:25063286-25063305 | MS.gene45611:CDS | 45.0% |
| ! | GGTTGCGTTTTTGTGCATCT+TGG | + | chr8.4:25063805-25063824 | None:intergenic | 45.0% |
| AACCACATAGTTCTCACCGC+AGG | - | chr8.4:25063476-25063495 | MS.gene45611:CDS | 50.0% | |
| AACCTGCGGTGAGAACTATG+TGG | + | chr8.4:25063481-25063500 | None:intergenic | 50.0% | |
| ACAAACCCATCAAACCCGCT+AGG | - | chr8.4:25063848-25063867 | MS.gene45611:CDS | 50.0% | |
| ACCTGGCAAACCCAAGTCTT+TGG | + | chr8.4:25064089-25064108 | None:intergenic | 50.0% | |
| AGCTGCTTGGAAAGCAATGC+AGG | - | chr8.4:25064322-25064341 | MS.gene45611:CDS | 50.0% | |
| CACCAAGCATGGAGGAAAGA+AGG | + | chr8.4:25064207-25064226 | None:intergenic | 50.0% | |
| CTTGACATTGTGGTGCCTAG+CGG | + | chr8.4:25063866-25063885 | None:intergenic | 50.0% | |
| CTTTGTGGCAGCAGCAACAA+CGG | + | chr8.4:25064146-25064165 | None:intergenic | 50.0% | |
| GCCGAAGCTTGACATCTTTG+TGG | + | chr8.4:25064161-25064180 | None:intergenic | 50.0% | |
| GCGGTGAGAACTATGTGGTT+GGG | + | chr8.4:25063476-25063495 | None:intergenic | 50.0% | |
| GCTCTCTTCCAAGACTACCA+TGG | - | chr8.4:25063380-25063399 | MS.gene45611:CDS | 50.0% | |
| GCTTTCGTTGTTGAGTCCAC+TGG | - | chr8.4:25064550-25064569 | MS.gene45611:CDS | 50.0% | |
| GTTTGAATGCTGGCATGCCA+TGG | + | chr8.4:25063400-25063419 | None:intergenic | 50.0% | |
| TCCAAAGACTTGGGTTTGCC+AGG | - | chr8.4:25064085-25064104 | MS.gene45611:intron | 50.0% | |
| TGCGGTGAGAACTATGTGGT+TGG | + | chr8.4:25063477-25063496 | None:intergenic | 50.0% | |
| TTGACATTGTGGTGCCTAGC+GGG | + | chr8.4:25063865-25063884 | None:intergenic | 50.0% | |
| CGCTAGGCACCACAATGTCA+AGG | - | chr8.4:25063864-25063883 | MS.gene45611:CDS | 55.0% | |
| CTGGCATGCCATGGTAGTCT+TGG | + | chr8.4:25063391-25063410 | None:intergenic | 55.0% | |
| !! | TGGTGCCTAGCGGGTTTGAT+GGG | + | chr8.4:25063856-25063875 | None:intergenic | 55.0% |
| GGTTTGCCAGGTTTCCGCGT+TGG | - | chr8.4:25064097-25064116 | MS.gene45611:intron | 60.0% | |
| !! | GTGGTGCCTAGCGGGTTTGA+TGG | + | chr8.4:25063857-25063876 | None:intergenic | 60.0% |
| ATGGCGCCAACGCGGAAACC+TGG | + | chr8.4:25064106-25064125 | None:intergenic | 65.0% | |
| CGGAGTAGATGGCGCCAACG+CGG | + | chr8.4:25064114-25064133 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 25063032 | 25064678 | 25063032 | ID=MS.gene45611 |
| chr8.4 | mRNA | 25063032 | 25064678 | 25063032 | ID=MS.gene45611.t1;Parent=MS.gene45611 |
| chr8.4 | exon | 25064532 | 25064678 | 25064532 | ID=MS.gene45611.t1.exon1;Parent=MS.gene45611.t1 |
| chr8.4 | CDS | 25064532 | 25064678 | 25064532 | ID=cds.MS.gene45611.t1;Parent=MS.gene45611.t1 |
| chr8.4 | exon | 25064128 | 25064420 | 25064128 | ID=MS.gene45611.t1.exon2;Parent=MS.gene45611.t1 |
| chr8.4 | CDS | 25064128 | 25064420 | 25064128 | ID=cds.MS.gene45611.t1;Parent=MS.gene45611.t1 |
| chr8.4 | exon | 25063032 | 25064013 | 25063032 | ID=MS.gene45611.t1.exon3;Parent=MS.gene45611.t1 |
| chr8.4 | CDS | 25063032 | 25064013 | 25063032 | ID=cds.MS.gene45611.t1;Parent=MS.gene45611.t1 |
| Gene Sequence |
| Protein sequence |
