Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45697.t1 | PNX84074.1 | 77.9 | 240 | 53 | 0 | 377 | 616 | 226 | 465 | 1.30E-105 | 394 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45697.t1 | O65009 | 42.8 | 222 | 119 | 3 | 401 | 615 | 60 | 280 | 5.1e-47 | 190.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45697.t1 | A0A2K3LZV7 | 77.9 | 240 | 53 | 0 | 377 | 616 | 226 | 465 | 9.0e-106 | 394.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04932 | MS.gene45697 | 0.875328 | 3.36E-68 | -1.69E-46 |
| MS.gene050338 | MS.gene45697 | 0.807215 | 5.64E-50 | -1.69E-46 |
| MS.gene050710 | MS.gene45697 | 0.814331 | 1.63E-51 | -1.69E-46 |
| MS.gene050809 | MS.gene45697 | 0.819739 | 9.91E-53 | -1.69E-46 |
| MS.gene05104 | MS.gene45697 | 0.808738 | 2.67E-50 | -1.69E-46 |
| MS.gene05240 | MS.gene45697 | 0.817414 | 3.34E-52 | -1.69E-46 |
| MS.gene05244 | MS.gene45697 | 0.816678 | 4.89E-52 | -1.69E-46 |
| MS.gene052702 | MS.gene45697 | 0.827377 | 1.62E-54 | -1.69E-46 |
| MS.gene053479 | MS.gene45697 | -0.814186 | 1.75E-51 | -1.69E-46 |
| MS.gene053776 | MS.gene45697 | 0.80767 | 4.51E-50 | -1.69E-46 |
| MS.gene053920 | MS.gene45697 | 0.806949 | 6.42E-50 | -1.69E-46 |
| MS.gene054706 | MS.gene45697 | 0.801964 | 7.02E-49 | -1.69E-46 |
| MS.gene054742 | MS.gene45697 | 0.80338 | 3.58E-49 | -1.69E-46 |
| MS.gene054884 | MS.gene45697 | 0.805195 | 1.50E-49 | -1.69E-46 |
| MS.gene056387 | MS.gene45697 | -0.823412 | 1.40E-53 | -1.69E-46 |
| MS.gene056590 | MS.gene45697 | 0.825173 | 5.41E-54 | -1.69E-46 |
| MS.gene056591 | MS.gene45697 | 0.825876 | 3.69E-54 | -1.69E-46 |
| MS.gene056688 | MS.gene45697 | 0.97946 | 5.12E-148 | -1.69E-46 |
| MS.gene056694 | MS.gene45697 | 0.828332 | 9.53E-55 | -1.69E-46 |
| MS.gene056697 | MS.gene45697 | 0.87399 | 9.58E-68 | -1.69E-46 |
| MS.gene056856 | MS.gene45697 | 0.831025 | 2.11E-55 | -1.69E-46 |
| MS.gene057261 | MS.gene45697 | 0.804905 | 1.73E-49 | -1.69E-46 |
| MS.gene057544 | MS.gene45697 | 0.804195 | 2.43E-49 | -1.69E-46 |
| MS.gene057717 | MS.gene45697 | 0.824459 | 7.98E-54 | -1.69E-46 |
| MS.gene058067 | MS.gene45697 | 0.8057 | 1.18E-49 | -1.69E-46 |
| MS.gene058158 | MS.gene45697 | 0.806651 | 7.42E-50 | -1.69E-46 |
| MS.gene058382 | MS.gene45697 | 0.813689 | 2.25E-51 | -1.69E-46 |
| MS.gene058838 | MS.gene45697 | -0.808731 | 2.68E-50 | -1.69E-46 |
| MS.gene05926 | MS.gene45697 | 0.862476 | 4.93E-64 | -1.69E-46 |
| MS.gene060087 | MS.gene45697 | 0.80722 | 5.62E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45697.t1 | MTR_4g069520 | 44.537 | 723 | 295 | 10 | 1 | 624 | 1 | 716 | 0.0 | 555 |
| MS.gene45697.t1 | MTR_4g069520 | 43.691 | 737 | 295 | 11 | 1 | 624 | 1 | 730 | 0.0 | 545 |
| MS.gene45697.t1 | MTR_4g069570 | 61.254 | 351 | 108 | 5 | 277 | 616 | 2 | 335 | 8.56e-148 | 431 |
| MS.gene45697.t1 | MTR_4g069550 | 52.092 | 478 | 163 | 11 | 180 | 624 | 26 | 470 | 7.47e-140 | 416 |
| MS.gene45697.t1 | MTR_4g069040 | 74.569 | 232 | 58 | 1 | 393 | 623 | 286 | 517 | 2.52e-127 | 385 |
| MS.gene45697.t1 | MTR_6g086530 | 69.231 | 208 | 63 | 1 | 413 | 619 | 1 | 208 | 1.67e-95 | 292 |
| MS.gene45697.t1 | MTR_3g116270 | 48.387 | 341 | 145 | 12 | 304 | 621 | 178 | 510 | 1.93e-95 | 302 |
| MS.gene45697.t1 | MTR_3g116320 | 51.736 | 288 | 132 | 4 | 336 | 621 | 410 | 692 | 2.47e-91 | 297 |
| MS.gene45697.t1 | MTR_3g107830 | 48.636 | 220 | 108 | 3 | 401 | 617 | 39 | 256 | 1.57e-69 | 226 |
| MS.gene45697.t1 | MTR_3g116410 | 47.511 | 221 | 111 | 3 | 401 | 618 | 59 | 277 | 3.49e-68 | 224 |
| MS.gene45697.t1 | MTR_3g116380 | 45.614 | 228 | 118 | 4 | 392 | 616 | 78 | 302 | 9.60e-64 | 213 |
| MS.gene45697.t1 | MTR_4g069680 | 46.364 | 220 | 113 | 3 | 401 | 617 | 70 | 287 | 2.22e-63 | 211 |
| MS.gene45697.t1 | MTR_4g068420 | 67.626 | 139 | 26 | 1 | 478 | 616 | 1 | 120 | 4.09e-60 | 196 |
| MS.gene45697.t1 | MTR_1g008500 | 35.747 | 221 | 132 | 7 | 401 | 617 | 171 | 385 | 4.48e-37 | 142 |
| MS.gene45697.t1 | MTR_3g109490 | 39.367 | 221 | 125 | 7 | 401 | 617 | 107 | 322 | 1.42e-36 | 139 |
| MS.gene45697.t1 | MTR_1g008470 | 35.185 | 216 | 131 | 5 | 401 | 614 | 89 | 297 | 1.79e-33 | 130 |
| MS.gene45697.t1 | MTR_0312s0030 | 33.486 | 218 | 135 | 6 | 401 | 615 | 113 | 323 | 2.37e-33 | 130 |
| MS.gene45697.t1 | MTR_1g007520 | 33.486 | 218 | 135 | 6 | 401 | 615 | 113 | 323 | 2.37e-33 | 130 |
| MS.gene45697.t1 | MTR_1g008510 | 33.796 | 216 | 136 | 5 | 401 | 615 | 115 | 324 | 1.24e-32 | 128 |
| MS.gene45697.t1 | MTR_1g008590 | 33.486 | 218 | 135 | 6 | 401 | 615 | 113 | 323 | 1.29e-32 | 128 |
| MS.gene45697.t1 | MTR_1g008530 | 32.877 | 219 | 132 | 7 | 406 | 617 | 14 | 224 | 3.18e-31 | 121 |
| MS.gene45697.t1 | MTR_1g008460 | 34.112 | 214 | 133 | 5 | 401 | 614 | 89 | 294 | 4.28e-31 | 123 |
| MS.gene45697.t1 | MTR_1g008560 | 32.727 | 220 | 137 | 6 | 401 | 615 | 115 | 328 | 6.74e-31 | 124 |
| MS.gene45697.t1 | MTR_4g069540 | 64.773 | 88 | 28 | 1 | 377 | 464 | 13 | 97 | 1.61e-30 | 115 |
| MS.gene45697.t1 | MTR_1g008450 | 34.632 | 231 | 134 | 8 | 392 | 614 | 89 | 310 | 6.73e-30 | 120 |
| MS.gene45697.t1 | MTR_5g034320 | 29.054 | 296 | 181 | 10 | 340 | 614 | 339 | 626 | 2.04e-26 | 114 |
| MS.gene45697.t1 | MTR_1g008580 | 32.386 | 176 | 112 | 5 | 441 | 615 | 1 | 170 | 3.68e-25 | 102 |
| MS.gene45697.t1 | MTR_8g064560 | 34.595 | 185 | 109 | 7 | 434 | 614 | 447 | 623 | 1.19e-23 | 106 |
| MS.gene45697.t1 | MTR_3g078090 | 28.111 | 217 | 148 | 5 | 401 | 614 | 413 | 624 | 1.75e-21 | 99.4 |
| MS.gene45697.t1 | MTR_8g064530 | 29.588 | 267 | 167 | 11 | 361 | 614 | 382 | 640 | 3.58e-21 | 98.6 |
| MS.gene45697.t1 | MTR_8g064500 | 30.415 | 217 | 143 | 7 | 401 | 614 | 159 | 370 | 1.10e-20 | 94.7 |
| MS.gene45697.t1 | MTR_4g133840 | 30.811 | 185 | 120 | 6 | 432 | 614 | 8 | 186 | 7.31e-19 | 85.5 |
| MS.gene45697.t1 | MTR_5g033350 | 30.682 | 176 | 113 | 5 | 446 | 619 | 35 | 203 | 7.62e-18 | 82.8 |
| MS.gene45697.t1 | MTR_5g033340 | 29.004 | 231 | 142 | 8 | 398 | 618 | 163 | 381 | 4.30e-16 | 80.9 |
| MS.gene45697.t1 | MTR_5g033340 | 31.788 | 151 | 95 | 4 | 446 | 594 | 6 | 150 | 1.25e-14 | 76.6 |
| MS.gene45697.t1 | MTR_5g033330 | 29.952 | 207 | 124 | 7 | 398 | 594 | 194 | 389 | 3.17e-15 | 79.3 |
| MS.gene45697.t1 | MTR_5g033330 | 31.788 | 151 | 95 | 4 | 446 | 594 | 37 | 181 | 3.33e-14 | 76.3 |
| MS.gene45697.t1 | MTR_5g033330 | 28.194 | 227 | 141 | 8 | 398 | 614 | 402 | 616 | 3.93e-13 | 72.8 |
| MS.gene45697.t1 | MTR_2g081770 | 31.050 | 219 | 121 | 10 | 401 | 616 | 79 | 270 | 1.40e-13 | 72.0 |
| MS.gene45697.t1 | MTR_8g445170 | 34.161 | 161 | 92 | 8 | 457 | 616 | 236 | 383 | 4.13e-12 | 68.9 |
| MS.gene45697.t1 | MTR_8g045880 | 34.437 | 151 | 85 | 8 | 467 | 616 | 177 | 314 | 1.69e-11 | 66.2 |
| MS.gene45697.t1 | MTR_8g045880 | 34.437 | 151 | 85 | 8 | 467 | 616 | 214 | 351 | 2.15e-11 | 66.2 |
| MS.gene45697.t1 | MTR_8g045880 | 34.437 | 151 | 85 | 8 | 467 | 616 | 212 | 349 | 2.17e-11 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45697.t1 | AT1G49320 | 34.926 | 272 | 153 | 6 | 360 | 615 | 15 | 278 | 9.44e-52 | 180 |
| MS.gene45697.t1 | AT5G25610 | 34.703 | 219 | 133 | 6 | 401 | 614 | 176 | 389 | 1.51e-35 | 138 |
| MS.gene45697.t1 | AT1G70370 | 29.545 | 220 | 141 | 7 | 401 | 614 | 411 | 622 | 5.68e-22 | 100 |
| MS.gene45697.t1 | AT1G70370 | 29.545 | 220 | 141 | 7 | 401 | 614 | 411 | 622 | 5.68e-22 | 100 |
| MS.gene45697.t1 | AT1G60390 | 28.182 | 220 | 144 | 7 | 401 | 614 | 409 | 620 | 7.62e-21 | 97.4 |
| MS.gene45697.t1 | AT1G23760 | 27.835 | 194 | 128 | 6 | 426 | 615 | 434 | 619 | 5.61e-18 | 88.2 |
Find 179 sgRNAs with CRISPR-Local
Find 251 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCCAAAATGGTGTAATTT+TGG | 0.083271 | 4.4:-38129290 | None:intergenic |
| TCTCCAAAATTACACCATTT+TGG | 0.170910 | 4.4:+38129287 | MS.gene45697:CDS |
| ATTCAAGCAGCTTGGAATTA+AGG | 0.228838 | 4.4:+38129512 | MS.gene45697:CDS |
| GGAAGTTGTGTAAGATCTTT+TGG | 0.228867 | 4.4:-38128050 | None:intergenic |
| GAATTCGTTGACAAAGTAAT+TGG | 0.254765 | 4.4:+38129207 | MS.gene45697:CDS |
| TAAGGAGTTAGCACATATTT+TGG | 0.279806 | 4.4:-38129172 | None:intergenic |
| AAACCTCTTGAATGCGAAAT+TGG | 0.291131 | 4.4:-38128990 | None:intergenic |
| GGAAGCCATGTTTGATCCTT+TGG | 0.307097 | 4.4:-38128266 | None:intergenic |
| CAAAACTCATGCTCATGATT+TGG | 0.334812 | 4.4:+38127976 | MS.gene45697:CDS |
| TTGGCTCGAGGAGAATCTTC+AGG | 0.344901 | 4.4:-38129096 | None:intergenic |
| AGCTCTTGGCATTTGCCATT+TGG | 0.347964 | 4.4:+38129458 | MS.gene45697:CDS |
| ACCCACAAAAGATTTCTTAC+AGG | 0.349441 | 4.4:-38129567 | None:intergenic |
| GTCCATTGGATTCATGGGTA+TGG | 0.353337 | 4.4:-38128792 | None:intergenic |
| TGTTTGATCCTTTGGAATCA+TGG | 0.360003 | 4.4:-38128258 | None:intergenic |
| TGTATGGTCCATTGGATTCA+TGG | 0.363988 | 4.4:-38128798 | None:intergenic |
| TATGACCCGTACTCATGATT+TGG | 0.365784 | 4.4:+38128300 | MS.gene45697:CDS |
| TGATGAGAATGGAGATAAAA+TGG | 0.371870 | 4.4:+38129434 | MS.gene45697:CDS |
| GAATTCAAGCATGGACTCTA+AGG | 0.373206 | 4.4:-38129190 | None:intergenic |
| AGCTGAGGGTGATGGGTTGT+TGG | 0.373536 | 4.4:-38129259 | None:intergenic |
| TAAGGCTCGTACTCATGATT+TGG | 0.375651 | 4.4:+38128192 | MS.gene45697:CDS |
| GGAAGTTGTGTAAGATCCTT+TGG | 0.376639 | 4.4:-38128374 | None:intergenic |
| TAGTAAATCGCATATGGATA+TGG | 0.382186 | 4.4:-38129360 | None:intergenic |
| TGTATGGTCCTTCGGAATCA+TGG | 0.394695 | 4.4:-38127934 | None:intergenic |
| TTGTAGAATGGCCAAGGAAT+TGG | 0.397261 | 4.4:+38127794 | MS.gene45697:intron |
| GTGTTCAAGGTTTCACTTGT+TGG | 0.397973 | 4.4:+38129411 | MS.gene45697:CDS |
| GGAAGTCGTGTAAGATCCTT+TGG | 0.408259 | 4.4:-38128482 | None:intergenic |
| ATGAGTACGAGCCTTATCTT+TGG | 0.408288 | 4.4:-38128185 | None:intergenic |
| GCCATTTGGACACATCTGAT+TGG | 0.410666 | 4.4:+38129472 | MS.gene45697:CDS |
| ATGAGCCTTATCTCCATTGT+AGG | 0.411017 | 4.4:-38128611 | None:intergenic |
| CCATTGTAGGCAGCATTGTA+AGG | 0.412683 | 4.4:-38128544 | None:intergenic |
| AAGTGTGTGTCTCATGGATT+TGG | 0.414528 | 4.4:-38129115 | None:intergenic |
| GTCATGTGATACTTCCAAAA+TGG | 0.414847 | 4.4:-38129301 | None:intergenic |
| TAAGGTGCCTCCTCATGATT+TGG | 0.416358 | 4.4:+38128084 | MS.gene45697:CDS |
| TGCTTGAATAGAATTAGATC+TGG | 0.419399 | 4.4:-38129498 | None:intergenic |
| ATGATTCAAGTTGGAAGATC+GGG | 0.423161 | 4.4:-38128902 | None:intergenic |
| ACTTTAGATGATCTTAATGT+TGG | 0.423544 | 4.4:+38128952 | MS.gene45697:CDS |
| ACGGGCCTTATCTGTATTGT+AGG | 0.438236 | 4.4:-38128395 | None:intergenic |
| TGTAAGGTCCTTCAGAATCA+TGG | 0.438353 | 4.4:-38128582 | None:intergenic |
| AGAGGGATAGCTGAGGGTGA+TGG | 0.442457 | 4.4:-38129267 | None:intergenic |
| ATGACATTAATGCTCCCAAA+TGG | 0.447741 | 4.4:+38129319 | MS.gene45697:CDS |
| TACAGGGACTAAAGTGTTCA+AGG | 0.447864 | 4.4:+38129398 | MS.gene45697:CDS |
| ACAGGGAAGAAGTGGCAAAC+TGG | 0.449165 | 4.4:-38129549 | None:intergenic |
| GAGGGATAGCTGAGGGTGAT+GGG | 0.455640 | 4.4:-38129266 | None:intergenic |
| TAAGGCTCGCACTCATAACT+TGG | 0.457652 | 4.4:+38128516 | MS.gene45697:CDS |
| GATAACATTGTATGGTCCTT+CGG | 0.457777 | 4.4:-38127942 | None:intergenic |
| ATGAGTGATATACCCATTGT+AGG | 0.457972 | 4.4:-38128341 | None:intergenic |
| CCATTGTAGGCAGCATTGTA+AGG | 0.460264 | 4.4:-38128112 | None:intergenic |
| CCATTGTAGGCAGCATTGTA+AGG | 0.460264 | 4.4:-38128436 | None:intergenic |
| CCGTTGTATGCAGCATTGTA+TGG | 0.460544 | 4.4:-38128220 | None:intergenic |
| TGGAGTTGTGACATTGAGAA+AGG | 0.461803 | 4.4:-38129048 | None:intergenic |
| CCATTGTAGGCAACATTGTA+AGG | 0.462042 | 4.4:-38128760 | None:intergenic |
| GGTAGTGAGAATATTATGTT+TGG | 0.463056 | 4.4:-38129238 | None:intergenic |
| TGTATGGTCCGTCTAAATCA+TGG | 0.465052 | 4.4:-38127880 | None:intergenic |
| CCATTGTAAGCAACATTGTA+TGG | 0.466134 | 4.4:-38128814 | None:intergenic |
| GGGATGGCAAGATACCCATT+TGG | 0.466562 | 4.4:-38129334 | None:intergenic |
| GTACAAGGCCCACACACAAC+TGG | 0.470575 | 4.4:+38127833 | MS.gene45697:CDS |
| CCATTGTATGCAGCATTGTA+AGG | 0.470701 | 4.4:-38128652 | None:intergenic |
| TATTGCCACTACATAGCTAC+AGG | 0.470996 | 4.4:+38129381 | MS.gene45697:CDS |
| TGGCAATAGTAAATCGCATA+TGG | 0.471720 | 4.4:-38129366 | None:intergenic |
| GGATGGCAAGATACCCATTT+GGG | 0.471798 | 4.4:-38129333 | None:intergenic |
| AGCAACATTGTATGGTCCAT+TGG | 0.471927 | 4.4:-38128806 | None:intergenic |
| CCTTACAATGCTGCCTACAA+TGG | 0.472378 | 4.4:+38128436 | MS.gene45697:CDS |
| AGAAAAGTTGAAGAACACTT+TGG | 0.472819 | 4.4:-38129068 | None:intergenic |
| GCCCATTCAAATCATGAGTA+CGG | 0.474912 | 4.4:-38128414 | None:intergenic |
| TGTAAGATCCTTTGGAATCA+TGG | 0.475100 | 4.4:-38128474 | None:intergenic |
| AGTCTCTAGCACCAATTCCT+TGG | 0.476779 | 4.4:-38127805 | None:intergenic |
| CATACAATGCTGCATACAAC+GGG | 0.477104 | 4.4:+38128221 | MS.gene45697:CDS |
| CATACAGAGGCTCACAAGAA+TGG | 0.477268 | 4.4:+38128922 | MS.gene45697:CDS |
| GCCCGTACTCATGATTTGAA+TGG | 0.483308 | 4.4:+38128412 | MS.gene45697:CDS |
| GTGCCTCCTCATGATTTGGA+TGG | 0.483776 | 4.4:+38128088 | MS.gene45697:CDS |
| CATACAATGTTGCTTACAAT+GGG | 0.483873 | 4.4:+38128815 | MS.gene45697:CDS |
| CCCGTACTCATGATTTGAAT+GGG | 0.486996 | 4.4:+38128413 | MS.gene45697:CDS |
| TCTTACAATGCTGCCTACAA+TGG | 0.487073 | 4.4:+38128004 | MS.gene45697:CDS |
| TCTTACAATGCTGCCTACAA+TGG | 0.487073 | 4.4:+38128328 | MS.gene45697:CDS |
| ACTCATACTCACGATTCAAA+TGG | 0.490442 | 4.4:+38128844 | MS.gene45697:CDS |
| TCACTTGTTGGTGATGAGAA+TGG | 0.493675 | 4.4:+38129423 | MS.gene45697:CDS |
| CCTTACAATGCTGCCTACAA+TGG | 0.493691 | 4.4:+38128544 | MS.gene45697:CDS |
| ATGAGTGGTATAACCATTGT+AGG | 0.495907 | 4.4:-38128125 | None:intergenic |
| TGGCTCGAGGAGAATCTTCA+GGG | 0.497335 | 4.4:-38129095 | None:intergenic |
| CCATACAATGTTGCTTACAA+TGG | 0.498882 | 4.4:+38128814 | MS.gene45697:CDS |
| CCATTGTAAGCAGCATTGTA+TGG | 0.499097 | 4.4:-38127896 | None:intergenic |
| AAGCAGCTTGGAATTAAGGC+TGG | 0.500386 | 4.4:+38129516 | MS.gene45697:CDS |
| ACCCGTCCAAATCATGAGTA+CGG | 0.502387 | 4.4:-38128306 | None:intergenic |
| TCCAATCAGATGTGTCCAAA+TGG | 0.503560 | 4.4:-38129473 | None:intergenic |
| ATGGGTGATATATCCATTGT+AGG | 0.503598 | 4.4:-38128773 | None:intergenic |
| CCATTGTAGGTAGTTGTGTA+AGG | 0.504619 | 4.4:-38128598 | None:intergenic |
| CTAATTCTATTCAAGCAGCT+TGG | 0.506296 | 4.4:+38129504 | MS.gene45697:CDS |
| GTCCTTCAGAATCATGGGTA+CGG | 0.506356 | 4.4:-38128576 | None:intergenic |
| CCATACAATGCTGCTTACAA+TGG | 0.507582 | 4.4:+38127896 | MS.gene45697:CDS |
| ATGAGTGGTATACCCATTGT+AGG | 0.507949 | 4.4:-38128449 | None:intergenic |
| TGCCTCCTCATGATTTGGAT+GGG | 0.509133 | 4.4:+38128089 | MS.gene45697:CDS |
| GGAGATAAAATGGAAGCTCT+TGG | 0.509573 | 4.4:+38129444 | MS.gene45697:CDS |
| ATGAGCAGTATACCCATTGT+AGG | 0.510388 | 4.4:-38128017 | None:intergenic |
| CATACAATGCTGCTTACAAT+GGG | 0.510573 | 4.4:+38127897 | MS.gene45697:CDS |
| CCCACAAAAGATTTCTTACA+GGG | 0.510673 | 4.4:-38129566 | None:intergenic |
| CCTCACACAGGTGGCTACAA+TGG | 0.512404 | 4.4:+38128706 | MS.gene45697:CDS |
| GTATGGTCCATTGGATTCAT+GGG | 0.513132 | 4.4:-38128797 | None:intergenic |
| TAGTTCAAGTGTGTGTCTCA+TGG | 0.514802 | 4.4:-38129121 | None:intergenic |
| ACGGGTGGTATATCCATTGT+AGG | 0.515852 | 4.4:-38128557 | None:intergenic |
| ACGAGCCTTATCTTTGGTGT+TGG | 0.519256 | 4.4:-38128179 | None:intergenic |
| AACTACCTACAATGGAGATA+AGG | 0.525612 | 4.4:+38128606 | MS.gene45697:CDS |
| CTTACAATGCTGCCTACAAT+GGG | 0.526874 | 4.4:+38128005 | MS.gene45697:CDS |
| CTTACAATGCTGCCTACAAT+GGG | 0.526874 | 4.4:+38128329 | MS.gene45697:CDS |
| CTTACAATGCTGCCTACAAT+GGG | 0.526874 | 4.4:+38128437 | MS.gene45697:CDS |
| ACTCATAGCCATGATTCAAA+AGG | 0.528864 | 4.4:+38128142 | MS.gene45697:CDS |
| AACTTCCTACAGTAATGATA+AGG | 0.530108 | 4.4:+38128066 | MS.gene45697:CDS |
| TCCTTCAGAATCATGGGTAC+GGG | 0.530443 | 4.4:-38128575 | None:intergenic |
| TATGATTCAAGTTGGAAGAT+CGG | 0.531065 | 4.4:-38128903 | None:intergenic |
| CCCATTCAAATCATGAGTAC+GGG | 0.534701 | 4.4:-38128413 | None:intergenic |
| CTCATGCTCATGATTTGGAC+GGG | 0.535553 | 4.4:+38127981 | MS.gene45697:CDS |
| TGACATTAATGCTCCCAAAT+GGG | 0.536817 | 4.4:+38129320 | MS.gene45697:CDS |
| CCTTACAATGTTGCCTACAA+TGG | 0.538533 | 4.4:+38128760 | MS.gene45697:CDS |
| CCTTACAATGCTGCATACAA+TGG | 0.538723 | 4.4:+38128652 | MS.gene45697:CDS |
| CTCATACTTATGACGTGGAT+GGG | 0.538997 | 4.4:+38128629 | MS.gene45697:CDS |
| CTCGTACTCATGATTTGGAC+GGG | 0.541778 | 4.4:+38128197 | MS.gene45697:CDS |
| AACTTCCAACACCAAAGATA+AGG | 0.547519 | 4.4:+38128174 | MS.gene45697:CDS |
| TCCATTGGATTCATGGGTAT+GGG | 0.548081 | 4.4:-38128791 | None:intergenic |
| GTATGGTCCTTCGGAATCAT+GGG | 0.549177 | 4.4:-38127933 | None:intergenic |
| CCTTACAATGCTGCCTACAA+TGG | 0.549903 | 4.4:+38128112 | MS.gene45697:CDS |
| GCTCATACTTATGACGTGGA+TGG | 0.553154 | 4.4:+38128628 | MS.gene45697:CDS |
| AGAAGCTGAAATGCTAGTGT+AGG | 0.554357 | 4.4:-38126559 | None:intergenic |
| GTGTTGTAGATAACATTGTA+TGG | 0.556017 | 4.4:-38127950 | None:intergenic |
| CCCGTACTCATGATTTGGAC+GGG | 0.556910 | 4.4:+38128305 | MS.gene45697:CDS |
| ATCGCATATGGATATGGAAG+GGG | 0.557114 | 4.4:-38129354 | None:intergenic |
| CCCGTCCAAATCATGAGTAC+GGG | 0.561164 | 4.4:-38128305 | None:intergenic |
| TTTGGATTCATGGGTATGTG+TGG | 0.562685 | 4.4:-38128680 | None:intergenic |
| ACCCGTACTCATGATTTGGA+CGG | 0.566108 | 4.4:+38128304 | MS.gene45697:CDS |
| GATTTCTTACAGGGAAGAAG+TGG | 0.566923 | 4.4:-38129557 | None:intergenic |
| GTAAGGTCCTTCAGAATCAT+GGG | 0.570618 | 4.4:-38128581 | None:intergenic |
| ACTCCAATTTCGCATTCAAG+AGG | 0.571581 | 4.4:+38128987 | MS.gene45697:CDS |
| TTGTGACATTGAGAAAGGAA+TGG | 0.575099 | 4.4:-38129043 | None:intergenic |
| CATTGTAGGCAGCATTGTAA+GGG | 0.579256 | 4.4:-38128543 | None:intergenic |
| GTATGGTCCGTCTAAATCAT+GGG | 0.579468 | 4.4:-38127879 | None:intergenic |
| GCATTATTGTAGAATGGCCA+AGG | 0.579532 | 4.4:+38127788 | MS.gene45697:intron |
| AAATCGCATATGGATATGGA+AGG | 0.580949 | 4.4:-38129356 | None:intergenic |
| TGTGATGATAAACCCATCAC+AGG | 0.582158 | 4.4:+38129144 | MS.gene45697:CDS |
| AACTTCCTACAATACAGATA+AGG | 0.582500 | 4.4:+38128390 | MS.gene45697:CDS |
| GCTAGAGACTTGAAAGTACA+AGG | 0.582735 | 4.4:+38127818 | MS.gene45697:CDS |
| CCATTGTAGCCACCTGTGTG+AGG | 0.586581 | 4.4:-38128706 | None:intergenic |
| TCATTGTAGCCAGTTGTGTG+TGG | 0.586868 | 4.4:-38127842 | None:intergenic |
| GCTTGAATAGAATTAGATCT+GGG | 0.588143 | 4.4:-38129497 | None:intergenic |
| TTTGTCAACGAATTCAAGCA+TGG | 0.589905 | 4.4:-38129199 | None:intergenic |
| CCATACAATGCTGCATACAA+CGG | 0.590290 | 4.4:+38128220 | MS.gene45697:CDS |
| CCTTACACAACTACCTACAA+TGG | 0.591066 | 4.4:+38128598 | MS.gene45697:CDS |
| ACTCATGCTCATGATTTGGA+CGG | 0.597559 | 4.4:+38127980 | MS.gene45697:CDS |
| AGGCACCTTATCATTACTGT+AGG | 0.600374 | 4.4:-38128071 | None:intergenic |
| ACCCATACCCATGAATCCAA+TGG | 0.602681 | 4.4:+38128790 | MS.gene45697:CDS |
| CATTGTAGCCAGTTGTGTGT+GGG | 0.603267 | 4.4:-38127841 | None:intergenic |
| GCTCGTACTCATGATTTGGA+CGG | 0.605381 | 4.4:+38128196 | MS.gene45697:CDS |
| ACTCATAATCATGATTCCAA+AGG | 0.608221 | 4.4:+38128358 | MS.gene45697:CDS |
| ATTTGAATCGTGAGTATGAG+TGG | 0.608503 | 4.4:-38128842 | None:intergenic |
| AGCCTCTGTATGATTCAAGT+TGG | 0.609127 | 4.4:-38128911 | None:intergenic |
| ACGGGTCATATCTTTAGTGT+CGG | 0.613379 | 4.4:-38128287 | None:intergenic |
| ACTCAAACTCGTGATTTAGA+CGG | 0.620513 | 4.4:+38128736 | MS.gene45697:CDS |
| ACCCGTACCCATGATTCTGA+AGG | 0.621860 | 4.4:+38128574 | MS.gene45697:CDS |
| TTCGGAATCATGGGTACGAG+TGG | 0.630046 | 4.4:-38127924 | None:intergenic |
| TTCAGAATCATGGGTACGGG+TGG | 0.630046 | 4.4:-38128572 | None:intergenic |
| ACTCGTACCCATGATTTAGA+CGG | 0.630479 | 4.4:+38127872 | MS.gene45697:CDS |
| TGTCTCATGGATTTGGCTCG+AGG | 0.632036 | 4.4:-38129108 | None:intergenic |
| TAGTCCCTGTAGCTATGTAG+TGG | 0.632642 | 4.4:-38129386 | None:intergenic |
| TGATTCAAGTTGGAAGATCG+GGG | 0.635303 | 4.4:-38128901 | None:intergenic |
| AATCGCATATGGATATGGAA+GGG | 0.645332 | 4.4:-38129355 | None:intergenic |
| ACTCATAGCCATGATTCCAA+AGG | 0.646157 | 4.4:+38128250 | MS.gene45697:CDS |
| ACTCATAGCCATGATTCCAA+AGG | 0.646157 | 4.4:+38128466 | MS.gene45697:CDS |
| TTTGGAATCATGGCTATGAG+TGG | 0.649158 | 4.4:-38128248 | None:intergenic |
| TTTGGAATCATGGCTATGAG+TGG | 0.649158 | 4.4:-38128464 | None:intergenic |
| GGCCCATCCAAATCATGAGG+AGG | 0.652386 | 4.4:-38128091 | None:intergenic |
| GTGATGATAAACCCATCACA+GGG | 0.653846 | 4.4:+38129145 | MS.gene45697:CDS |
| TGATTCCAAAGGATCAAACA+TGG | 0.661194 | 4.4:+38128261 | MS.gene45697:CDS |
| TAAGGCCCATCCAAATCATG+AGG | 0.664395 | 4.4:-38128094 | None:intergenic |
| ACTCGTACCCATGATTCCGA+AGG | 0.667324 | 4.4:+38127926 | MS.gene45697:CDS |
| GAATCATAGTACTCTTCACA+TGG | 0.673977 | 4.4:-38129613 | None:intergenic |
| CATATGGATATGGAAGGGGA+TGG | 0.675097 | 4.4:-38129350 | None:intergenic |
| TAAGGCTCATACTTATGACG+TGG | 0.679385 | 4.4:+38128624 | MS.gene45697:CDS |
| TTCCAACTTGAATCATACAG+AGG | 0.685413 | 4.4:+38128909 | MS.gene45697:CDS |
| GATTCAAGTTGGAAGATCGG+GGG | 0.695599 | 4.4:-38128900 | None:intergenic |
| ATTGCCACTACATAGCTACA+GGG | 0.697067 | 4.4:+38129382 | MS.gene45697:CDS |
| GCGATAGCATCAGAAGCCTG+AGG | 0.710136 | 4.4:-38129591 | None:intergenic |
| TGATGATAAACCCATCACAG+GGG | 0.795789 | 4.4:+38129146 | MS.gene45697:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATAAACTTTCAATTCAA+CGG | + | chr4.4:38127625-38127644 | MS.gene45697:intron | 15.0% |
| !! | AATTATAAGATATGTTATTG+AGG | + | chr4.4:38127510-38127529 | MS.gene45697:intron | 15.0% |
| !!! | AAAATTATTTTATTGTGTCA+AGG | - | chr4.4:38127570-38127589 | None:intergenic | 15.0% |
| !!! | TAAATATTTTACAAAACAGA+CGG | - | chr4.4:38127238-38127257 | None:intergenic | 15.0% |
| !!! | TTTGTAAAATTTTACAGAAA+TGG | + | chr4.4:38127595-38127614 | MS.gene45697:intron | 15.0% |
| !!! | TTTTTCTGAAAAATTTAATC+AGG | + | chr4.4:38126777-38126796 | MS.gene45697:intron | 15.0% |
| !! | CAGAAAAATAAAAATAGTCA+CGG | - | chr4.4:38126765-38126784 | None:intergenic | 20.0% |
| !!! | CACTTTGTATCTTTTTTTTT+TGG | + | chr4.4:38127026-38127045 | MS.gene45697:intron | 20.0% |
| !!! | CTTTTTTAAAGTGAATAAGT+GGG | + | chr4.4:38127076-38127095 | MS.gene45697:intron | 20.0% |
| !!! | TTTAGTTATTTTCTGCATTA+CGG | + | chr4.4:38126585-38126604 | MS.gene45697:CDS | 20.0% |
| !!! | TTTTTTAAAGTGAATAAGTG+GGG | + | chr4.4:38127077-38127096 | MS.gene45697:intron | 20.0% |
| ! | AATGCCATAACAATAATTAG+TGG | - | chr4.4:38127773-38127792 | None:intergenic | 25.0% |
| ! | ACTTTAGATGATCTTAATGT+TGG | + | chr4.4:38128952-38128971 | MS.gene45697:CDS | 25.0% |
| ! | CTATTAAGAAGTCTATTTGA+TGG | + | chr4.4:38126800-38126819 | MS.gene45697:intron | 25.0% |
| ! | GAAGAAAATTCAGTTTGAAA+GGG | + | chr4.4:38126944-38126963 | MS.gene45697:intron | 25.0% |
| ! | GACGCTTAATAACATATTAT+AGG | - | chr4.4:38127003-38127022 | None:intergenic | 25.0% |
| ! | GACTTCCTACAATAAAAATA+AGG | + | chr4.4:38128498-38128517 | MS.gene45697:CDS | 25.0% |
| ! | TGAAGAAAATTCAGTTTGAA+AGG | + | chr4.4:38126943-38126962 | MS.gene45697:intron | 25.0% |
| !! | CCACTTATTCACTTTAAAAA+AGG | - | chr4.4:38127078-38127097 | None:intergenic | 25.0% |
| !!! | CCTTTTTTAAAGTGAATAAG+TGG | + | chr4.4:38127075-38127094 | MS.gene45697:intron | 25.0% |
| !!! | TACATATTGATTTCGTTAGT+TGG | + | chr4.4:38127747-38127766 | MS.gene45697:intron | 25.0% |
| AAAAGTGGAAACATGACTAT+AGG | - | chr4.4:38126709-38126728 | None:intergenic | 30.0% | |
| AACTTCCTACAATACAGATA+AGG | + | chr4.4:38128390-38128409 | MS.gene45697:CDS | 30.0% | |
| AACTTCCTACAGTAATGATA+AGG | + | chr4.4:38128066-38128085 | MS.gene45697:CDS | 30.0% | |
| ACTCATAATCATGATTCCAA+AGG | + | chr4.4:38128358-38128377 | MS.gene45697:CDS | 30.0% | |
| AGAAAAGTTGAAGAACACTT+TGG | - | chr4.4:38129071-38129090 | None:intergenic | 30.0% | |
| CAGAAAAAGAAAAACTAGTC+AGG | - | chr4.4:38126734-38126753 | None:intergenic | 30.0% | |
| GAATTCGTTGACAAAGTAAT+TGG | + | chr4.4:38129207-38129226 | MS.gene45697:CDS | 30.0% | |
| GCATCATCAATGTAACAATT+GGG | - | chr4.4:38127706-38127725 | None:intergenic | 30.0% | |
| GCTTGAATAGAATTAGATCT+GGG | - | chr4.4:38129500-38129519 | None:intergenic | 30.0% | |
| GGTAGTGAGAATATTATGTT+TGG | - | chr4.4:38129241-38129260 | None:intergenic | 30.0% | |
| GGTATATCATGCAACATTTA+GGG | + | chr4.4:38126637-38126656 | MS.gene45697:intron | 30.0% | |
| GTGTTGTAGATAACATTGTA+TGG | - | chr4.4:38127953-38127972 | None:intergenic | 30.0% | |
| GTTATGGCATTATTGTAGAA+TGG | + | chr4.4:38127782-38127801 | MS.gene45697:intron | 30.0% | |
| TAGTAAATCGCATATGGATA+TGG | - | chr4.4:38129363-38129382 | None:intergenic | 30.0% | |
| TGATGAGAATGGAGATAAAA+TGG | + | chr4.4:38129434-38129453 | MS.gene45697:CDS | 30.0% | |
| TGCATCATCAATGTAACAAT+TGG | - | chr4.4:38127707-38127726 | None:intergenic | 30.0% | |
| TGCTTGAATAGAATTAGATC+TGG | - | chr4.4:38129501-38129520 | None:intergenic | 30.0% | |
| TGGTATATCATGCAACATTT+AGG | + | chr4.4:38126636-38126655 | MS.gene45697:intron | 30.0% | |
| TTGGCCACTAATTATTGTTA+TGG | + | chr4.4:38127766-38127785 | MS.gene45697:intron | 30.0% | |
| ! | AACACTTAACGACGTTTTAA+AGG | + | chr4.4:38127359-38127378 | MS.gene45697:intron | 30.0% |
| ! | ATCGTCAGTTTGTTCAAATT+TGG | - | chr4.4:38127431-38127450 | None:intergenic | 30.0% |
| ! | CATACAATGTTGCTTACAAT+GGG | + | chr4.4:38128815-38128834 | MS.gene45697:CDS | 30.0% |
| ! | CTTCCAAAATGGTGTAATTT+TGG | - | chr4.4:38129293-38129312 | None:intergenic | 30.0% |
| ! | GACTTTTGAATCTTTTGCAT+TGG | - | chr4.4:38128881-38128900 | None:intergenic | 30.0% |
| ! | TAAGGAGTTAGCACATATTT+TGG | - | chr4.4:38129175-38129194 | None:intergenic | 30.0% |
| ! | TATTTTACAAAACAGACGGT+CGG | - | chr4.4:38127234-38127253 | None:intergenic | 30.0% |
| ! | TCTCCAAAATTACACCATTT+TGG | + | chr4.4:38129287-38129306 | MS.gene45697:CDS | 30.0% |
| ! | TGTAAGATCCTTTTGAATCA+TGG | - | chr4.4:38128153-38128172 | None:intergenic | 30.0% |
| !! | AAAATGGTGTAATTTTGGAG+AGG | - | chr4.4:38129288-38129307 | None:intergenic | 30.0% |
| !! | AAATGGTGTAATTTTGGAGA+GGG | - | chr4.4:38129287-38129306 | None:intergenic | 30.0% |
| !! | CAGTTACATCAATGTTTTTG+AGG | - | chr4.4:38127269-38127288 | None:intergenic | 30.0% |
| !! | TATGATTCAAGTTGGAAGAT+CGG | - | chr4.4:38128906-38128925 | None:intergenic | 30.0% |
| !!! | CTGACTAGTTTTTCTTTTTC+TGG | + | chr4.4:38126732-38126751 | MS.gene45697:intron | 30.0% |
| !!! | TGTAAGATCTTTTGGAATCA+TGG | - | chr4.4:38128045-38128064 | None:intergenic | 30.0% |
| AAAACTAGTCAGGCTAAAAG+TGG | - | chr4.4:38126724-38126743 | None:intergenic | 35.0% | |
| AAACCTCTTGAATGCGAAAT+TGG | - | chr4.4:38128993-38129012 | None:intergenic | 35.0% | |
| AAATCGCATATGGATATGGA+AGG | - | chr4.4:38129359-38129378 | None:intergenic | 35.0% | |
| AACTACCTACAATGGAGATA+AGG | + | chr4.4:38128606-38128625 | MS.gene45697:CDS | 35.0% | |
| AACTTCCAACACCAAAGATA+AGG | + | chr4.4:38128174-38128193 | MS.gene45697:CDS | 35.0% | |
| AATCGCATATGGATATGGAA+GGG | - | chr4.4:38129358-38129377 | None:intergenic | 35.0% | |
| ACACAGACATAAAAGAGAGA+AGG | - | chr4.4:38127297-38127316 | None:intergenic | 35.0% | |
| ACATGCATTGTTATATGCAG+GGG | - | chr4.4:38127125-38127144 | None:intergenic | 35.0% | |
| ACCCACAAAAGATTTCTTAC+AGG | - | chr4.4:38129570-38129589 | None:intergenic | 35.0% | |
| ACGTCACCTTTCAAAAAAAG+AGG | + | chr4.4:38129014-38129033 | MS.gene45697:CDS | 35.0% | |
| ACTCAAACTCGTGATTTAGA+CGG | + | chr4.4:38128736-38128755 | MS.gene45697:CDS | 35.0% | |
| ACTCATACTCACGATTCAAA+TGG | + | chr4.4:38128844-38128863 | MS.gene45697:CDS | 35.0% | |
| ACTCATAGCCATGATTCAAA+AGG | + | chr4.4:38128142-38128161 | MS.gene45697:CDS | 35.0% | |
| AGAACTGATCACCTTATGTA+TGG | + | chr4.4:38126967-38126986 | MS.gene45697:intron | 35.0% | |
| ATGACATTAATGCTCCCAAA+TGG | + | chr4.4:38129319-38129338 | MS.gene45697:CDS | 35.0% | |
| ATGAGTGATATACCCATTGT+AGG | - | chr4.4:38128344-38128363 | None:intergenic | 35.0% | |
| ATGAGTGGTATAACCATTGT+AGG | - | chr4.4:38128128-38128147 | None:intergenic | 35.0% | |
| ATGGGTGATATATCCATTGT+AGG | - | chr4.4:38128776-38128795 | None:intergenic | 35.0% | |
| ATTCAAGCAGCTTGGAATTA+AGG | + | chr4.4:38129512-38129531 | MS.gene45697:CDS | 35.0% | |
| ATTTGAATCGTGAGTATGAG+TGG | - | chr4.4:38128845-38128864 | None:intergenic | 35.0% | |
| CAAAACTCATGCTCATGATT+TGG | + | chr4.4:38127976-38127995 | MS.gene45697:CDS | 35.0% | |
| CCATTGTAAGCAACATTGTA+TGG | - | chr4.4:38128817-38128836 | None:intergenic | 35.0% | |
| CCCACAAAAGATTTCTTACA+GGG | - | chr4.4:38129569-38129588 | None:intergenic | 35.0% | |
| CTAATTCTATTCAAGCAGCT+TGG | + | chr4.4:38129504-38129523 | MS.gene45697:CDS | 35.0% | |
| GACATGCATTGTTATATGCA+GGG | - | chr4.4:38127126-38127145 | None:intergenic | 35.0% | |
| GATAACATTGTATGGTCCTT+CGG | - | chr4.4:38127945-38127964 | None:intergenic | 35.0% | |
| GTACGAAGTTTCCATACATA+AGG | - | chr4.4:38126981-38127000 | None:intergenic | 35.0% | |
| GTCATGTGATACTTCCAAAA+TGG | - | chr4.4:38129304-38129323 | None:intergenic | 35.0% | |
| TGACATTAATGCTCCCAAAT+GGG | + | chr4.4:38129320-38129339 | MS.gene45697:CDS | 35.0% | |
| TGATTCCAAAGGATCAAACA+TGG | + | chr4.4:38128261-38128280 | MS.gene45697:CDS | 35.0% | |
| TGGCAATAGTAAATCGCATA+TGG | - | chr4.4:38129369-38129388 | None:intergenic | 35.0% | |
| TTATACACGCTCGTATTATC+TGG | + | chr4.4:38126616-38126635 | MS.gene45697:intron | 35.0% | |
| TTCCAACTTGAATCATACAG+AGG | + | chr4.4:38128909-38128928 | MS.gene45697:CDS | 35.0% | |
| TTGTGACATTGAGAAAGGAA+TGG | - | chr4.4:38129046-38129065 | None:intergenic | 35.0% | |
| TTTGTCAACGAATTCAAGCA+TGG | - | chr4.4:38129202-38129221 | None:intergenic | 35.0% | |
| ! | CATACAATGCTGCTTACAAT+GGG | + | chr4.4:38127897-38127916 | MS.gene45697:CDS | 35.0% |
| ! | CCATACAATGTTGCTTACAA+TGG | + | chr4.4:38128814-38128833 | MS.gene45697:CDS | 35.0% |
| ! | CCCTGTAAGAAATCTTTTGT+GGG | + | chr4.4:38129566-38129585 | MS.gene45697:CDS | 35.0% |
| ! | GGAAGTTGTGTAAGATCTTT+TGG | - | chr4.4:38128053-38128072 | None:intergenic | 35.0% |
| ! | GTTTTGTACCAACAATGAGT+TGG | + | chr4.4:38126882-38126901 | MS.gene45697:intron | 35.0% |
| ! | TCCCTGTAAGAAATCTTTTG+TGG | + | chr4.4:38129565-38129584 | MS.gene45697:CDS | 35.0% |
| ! | TTTTGAATCATGGCTATGAG+TGG | - | chr4.4:38128143-38128162 | None:intergenic | 35.0% |
| !! | ATGATTCAAGTTGGAAGATC+GGG | - | chr4.4:38128905-38128924 | None:intergenic | 35.0% |
| !! | TGTAAGATCCTTTGGAATCA+TGG | - | chr4.4:38128369-38128388 | None:intergenic | 35.0% |
| !! | TGTTTGATCCTTTGGAATCA+TGG | - | chr4.4:38128261-38128280 | None:intergenic | 35.0% |
| !! | TTTTTGGTCAAGTAGTCTAG+TGG | + | chr4.4:38127042-38127061 | MS.gene45697:intron | 35.0% |
| !!! | AGTCAGCCTCTTTTTTTGAA+AGG | - | chr4.4:38129023-38129042 | None:intergenic | 35.0% |
| !!! | GCGAGCCTTATTTTTATTGT+AGG | - | chr4.4:38128506-38128525 | None:intergenic | 35.0% |
| !!! | GTGAGGTTTTTTGGATTCAT+GGG | - | chr4.4:38128692-38128711 | None:intergenic | 35.0% |
| !!! | TGTGAGGTTTTTTGGATTCA+TGG | - | chr4.4:38128693-38128712 | None:intergenic | 35.0% |
| AAGTGTGTGTCTCATGGATT+TGG | - | chr4.4:38129118-38129137 | None:intergenic | 40.0% | |
| ACGGGTCATATCTTTAGTGT+CGG | - | chr4.4:38128290-38128309 | None:intergenic | 40.0% | |
| ACTCATAGCCATGATTCCAA+AGG | + | chr4.4:38128250-38128269 | MS.gene45697:CDS | 40.0% | |
| ACTCCAATTTCGCATTCAAG+AGG | + | chr4.4:38128987-38129006 | MS.gene45697:CDS | 40.0% | |
| ACTCGTACCCATGATTTAGA+CGG | + | chr4.4:38127872-38127891 | MS.gene45697:CDS | 40.0% | |
| AGAAGCTGAAATGCTAGTGT+AGG | - | chr4.4:38126562-38126581 | None:intergenic | 40.0% | |
| AGCAACATTGTATGGTCCAT+TGG | - | chr4.4:38128809-38128828 | None:intergenic | 40.0% | |
| AGCCTCTGTATGATTCAAGT+TGG | - | chr4.4:38128914-38128933 | None:intergenic | 40.0% | |
| AGGCACCTTATCATTACTGT+AGG | - | chr4.4:38128074-38128093 | None:intergenic | 40.0% | |
| ATCGCATATGGATATGGAAG+GGG | - | chr4.4:38129357-38129376 | None:intergenic | 40.0% | |
| ATGAGCAGTATACCCATTGT+AGG | - | chr4.4:38128020-38128039 | None:intergenic | 40.0% | |
| ATGAGTGGTATACCCATTGT+AGG | - | chr4.4:38128452-38128471 | None:intergenic | 40.0% | |
| ATTGCCACTACATAGCTACA+GGG | + | chr4.4:38129382-38129401 | MS.gene45697:CDS | 40.0% | |
| CACTTGTACCAACTCATTGT+TGG | - | chr4.4:38126893-38126912 | None:intergenic | 40.0% | |
| CAGACATAAAAGAGAGAAGG+AGG | - | chr4.4:38127294-38127313 | None:intergenic | 40.0% | |
| CATACAATGCTGCATACAAC+GGG | + | chr4.4:38128221-38128240 | MS.gene45697:CDS | 40.0% | |
| CATTGTAGGCAGCATTGTAA+GGG | - | chr4.4:38128006-38128025 | None:intergenic | 40.0% | |
| CCATACAATGCTGCATACAA+CGG | + | chr4.4:38128220-38128239 | MS.gene45697:CDS | 40.0% | |
| CCATTGTAAGCAGCATTGTA+TGG | - | chr4.4:38127899-38127918 | None:intergenic | 40.0% | |
| CCATTGTAGGCAACATTGTA+AGG | - | chr4.4:38128763-38128782 | None:intergenic | 40.0% | |
| CCATTGTAGGTAGTTGTGTA+AGG | - | chr4.4:38128601-38128620 | None:intergenic | 40.0% | |
| CCATTGTATGCAGCATTGTA+AGG | - | chr4.4:38128655-38128674 | None:intergenic | 40.0% | |
| CCCATTCAAATCATGAGTAC+GGG | - | chr4.4:38128416-38128435 | None:intergenic | 40.0% | |
| CCCGTACTCATGATTTGAAT+GGG | + | chr4.4:38128413-38128432 | MS.gene45697:CDS | 40.0% | |
| CCTTACAATGCTGCATACAA+TGG | + | chr4.4:38128652-38128671 | MS.gene45697:CDS | 40.0% | |
| CCTTACAATGTTGCCTACAA+TGG | + | chr4.4:38128760-38128779 | MS.gene45697:CDS | 40.0% | |
| CCTTACACAACTACCTACAA+TGG | + | chr4.4:38128598-38128617 | MS.gene45697:CDS | 40.0% | |
| CTCATACTTATGACGTGGAT+GGG | + | chr4.4:38128629-38128648 | MS.gene45697:CDS | 40.0% | |
| CTTACAATGCTGCCTACAAT+GGG | + | chr4.4:38128005-38128024 | MS.gene45697:CDS | 40.0% | |
| GAATCCAAAAAACCTCACAC+AGG | + | chr4.4:38128694-38128713 | MS.gene45697:CDS | 40.0% | |
| GAATTCAAGCATGGACTCTA+AGG | - | chr4.4:38129193-38129212 | None:intergenic | 40.0% | |
| GAATTTGGACTCTCGAATTC+AGG | + | chr4.4:38126918-38126937 | MS.gene45697:intron | 40.0% | |
| GATTTCTTACAGGGAAGAAG+TGG | - | chr4.4:38129560-38129579 | None:intergenic | 40.0% | |
| GCATTATTGTAGAATGGCCA+AGG | + | chr4.4:38127788-38127807 | MS.gene45697:intron | 40.0% | |
| GCCCATTCAAATCATGAGTA+CGG | - | chr4.4:38128417-38128436 | None:intergenic | 40.0% | |
| GGAAGTTGTGTAAGATCCTT+TGG | - | chr4.4:38128161-38128180 | None:intergenic | 40.0% | |
| GGACATGCATTGTTATATGC+AGG | - | chr4.4:38127127-38127146 | None:intergenic | 40.0% | |
| GGAGATAAAATGGAAGCTCT+TGG | + | chr4.4:38129444-38129463 | MS.gene45697:CDS | 40.0% | |
| GGTACAAGTGGCAAAGAATT+TGG | + | chr4.4:38126903-38126922 | MS.gene45697:intron | 40.0% | |
| GTAAGGTCCTTCAGAATCAT+GGG | - | chr4.4:38128584-38128603 | None:intergenic | 40.0% | |
| GTATGGTCCATTGGATTCAT+GGG | - | chr4.4:38128800-38128819 | None:intergenic | 40.0% | |
| GTATGGTCCGTCTAAATCAT+GGG | - | chr4.4:38127882-38127901 | None:intergenic | 40.0% | |
| GTCTTCTGCATTTATGCATC+TGG | + | chr4.4:38126672-38126691 | MS.gene45697:intron | 40.0% | |
| GTGATGATAAACCCATCACA+GGG | + | chr4.4:38129145-38129164 | MS.gene45697:CDS | 40.0% | |
| GTGTTCAAGGTTTCACTTGT+TGG | + | chr4.4:38129411-38129430 | MS.gene45697:CDS | 40.0% | |
| TAAGGCTCATACTTATGACG+TGG | + | chr4.4:38128624-38128643 | MS.gene45697:CDS | 40.0% | |
| TAAGGCTCGTACTCATGATT+TGG | + | chr4.4:38128192-38128211 | MS.gene45697:CDS | 40.0% | |
| TAGTTCAAGTGTGTGTCTCA+TGG | - | chr4.4:38129124-38129143 | None:intergenic | 40.0% | |
| TATGACCCGTACTCATGATT+TGG | + | chr4.4:38128300-38128319 | MS.gene45697:CDS | 40.0% | |
| TATTGCCACTACATAGCTAC+AGG | + | chr4.4:38129381-38129400 | MS.gene45697:CDS | 40.0% | |
| TCCAATCAGATGTGTCCAAA+TGG | - | chr4.4:38129476-38129495 | None:intergenic | 40.0% | |
| TCCATTGGATTCATGGGTAT+GGG | - | chr4.4:38128794-38128813 | None:intergenic | 40.0% | |
| TCTTACAATGCTGCCTACAA+TGG | + | chr4.4:38128004-38128023 | MS.gene45697:CDS | 40.0% | |
| TGATGATAAACCCATCACAG+GGG | + | chr4.4:38129146-38129165 | MS.gene45697:CDS | 40.0% | |
| TGGAGTTGTGACATTGAGAA+AGG | - | chr4.4:38129051-38129070 | None:intergenic | 40.0% | |
| TGTAAGGTCCTTCAGAATCA+TGG | - | chr4.4:38128585-38128604 | None:intergenic | 40.0% | |
| TGTATGGTCCATTGGATTCA+TGG | - | chr4.4:38128801-38128820 | None:intergenic | 40.0% | |
| TGTATGGTCCGTCTAAATCA+TGG | - | chr4.4:38127883-38127902 | None:intergenic | 40.0% | |
| TGTGATGATAAACCCATCAC+AGG | + | chr4.4:38129144-38129163 | MS.gene45697:CDS | 40.0% | |
| TTGTAGAATGGCCAAGGAAT+TGG | + | chr4.4:38127794-38127813 | MS.gene45697:intron | 40.0% | |
| TTTGGATTCATGGGTATGTG+TGG | - | chr4.4:38128683-38128702 | None:intergenic | 40.0% | |
| ! | AAATCTTTTGTGGGTTCCTC+AGG | + | chr4.4:38129575-38129594 | MS.gene45697:CDS | 40.0% |
| ! | ACTCATGCTCATGATTTGGA+CGG | + | chr4.4:38127980-38127999 | MS.gene45697:CDS | 40.0% |
| ! | ATGAGCCTTATCTCCATTGT+AGG | - | chr4.4:38128614-38128633 | None:intergenic | 40.0% |
| ! | ATGAGTACGAGCCTTATCTT+TGG | - | chr4.4:38128188-38128207 | None:intergenic | 40.0% |
| ! | CCATACAATGCTGCTTACAA+TGG | + | chr4.4:38127896-38127915 | MS.gene45697:CDS | 40.0% |
| ! | GCTAGAGACTTGAAAGTACA+AGG | + | chr4.4:38127818-38127837 | MS.gene45697:CDS | 40.0% |
| ! | TACAGGGACTAAAGTGTTCA+AGG | + | chr4.4:38129398-38129417 | MS.gene45697:CDS | 40.0% |
| ! | TTTGGAATCATGGCTATGAG+TGG | - | chr4.4:38128251-38128270 | None:intergenic | 40.0% |
| !! | CAACAATGAGTTGGTACAAG+TGG | + | chr4.4:38126891-38126910 | MS.gene45697:intron | 40.0% |
| !! | TCACTTGTTGGTGATGAGAA+TGG | + | chr4.4:38129423-38129442 | MS.gene45697:CDS | 40.0% |
| !! | TGATTCAAGTTGGAAGATCG+GGG | - | chr4.4:38128904-38128923 | None:intergenic | 40.0% |
| AAGCAGCTTGGAATTAAGGC+TGG | + | chr4.4:38129516-38129535 | MS.gene45697:CDS | 45.0% | |
| ACCCATACCCATGAATCCAA+TGG | + | chr4.4:38128790-38128809 | MS.gene45697:CDS | 45.0% | |
| ACCCGTCCAAATCATGAGTA+CGG | - | chr4.4:38128309-38128328 | None:intergenic | 45.0% | |
| ACGGGTGGTATATCCATTGT+AGG | - | chr4.4:38128560-38128579 | None:intergenic | 45.0% | |
| AGCTCTTGGCATTTGCCATT+TGG | + | chr4.4:38129458-38129477 | MS.gene45697:CDS | 45.0% | |
| AGTCTCTAGCACCAATTCCT+TGG | - | chr4.4:38127808-38127827 | None:intergenic | 45.0% | |
| CATACAGAGGCTCACAAGAA+TGG | + | chr4.4:38128922-38128941 | MS.gene45697:CDS | 45.0% | |
| CATATGGATATGGAAGGGGA+TGG | - | chr4.4:38129353-38129372 | None:intergenic | 45.0% | |
| CATTGTAGCCAGTTGTGTGT+GGG | - | chr4.4:38127844-38127863 | None:intergenic | 45.0% | |
| CATTGTTATATGCAGGGGTC+GGG | - | chr4.4:38127120-38127139 | None:intergenic | 45.0% | |
| CCATTGTAGGCAGCATTGTA+AGG | - | chr4.4:38128007-38128026 | None:intergenic | 45.0% | |
| CCGTTGTATGCAGCATTGTA+TGG | - | chr4.4:38128223-38128242 | None:intergenic | 45.0% | |
| CCTTACAATGCTGCCTACAA+TGG | + | chr4.4:38128112-38128131 | MS.gene45697:CDS | 45.0% | |
| GCATTGTTATATGCAGGGGT+CGG | - | chr4.4:38127121-38127140 | None:intergenic | 45.0% | |
| GCCATTTGGACACATCTGAT+TGG | + | chr4.4:38129472-38129491 | MS.gene45697:CDS | 45.0% | |
| GCCCGTACTCATGATTTGAA+TGG | + | chr4.4:38128412-38128431 | MS.gene45697:CDS | 45.0% | |
| GCTCATACTTATGACGTGGA+TGG | + | chr4.4:38128628-38128647 | MS.gene45697:CDS | 45.0% | |
| GGAAGCCATGTTTGATCCTT+TGG | - | chr4.4:38128269-38128288 | None:intergenic | 45.0% | |
| GGAAGTCGTGTAAGATCCTT+TGG | - | chr4.4:38128485-38128504 | None:intergenic | 45.0% | |
| GGATGGCAAGATACCCATTT+GGG | - | chr4.4:38129336-38129355 | None:intergenic | 45.0% | |
| GTATGGTCCTTCGGAATCAT+GGG | - | chr4.4:38127936-38127955 | None:intergenic | 45.0% | |
| GTCCATTGGATTCATGGGTA+TGG | - | chr4.4:38128795-38128814 | None:intergenic | 45.0% | |
| GTCCTTCAGAATCATGGGTA+CGG | - | chr4.4:38128579-38128598 | None:intergenic | 45.0% | |
| TAAGGCCCATCCAAATCATG+AGG | - | chr4.4:38128097-38128116 | None:intergenic | 45.0% | |
| TAAGGCTCGCACTCATAACT+TGG | + | chr4.4:38128516-38128535 | MS.gene45697:CDS | 45.0% | |
| TAGTCCCTGTAGCTATGTAG+TGG | - | chr4.4:38129389-38129408 | None:intergenic | 45.0% | |
| TCATTGTAGCCAGTTGTGTG+TGG | - | chr4.4:38127845-38127864 | None:intergenic | 45.0% | |
| TCCAAAAAACCTCACACAGG+TGG | + | chr4.4:38128697-38128716 | MS.gene45697:CDS | 45.0% | |
| TCCTTCAGAATCATGGGTAC+GGG | - | chr4.4:38128578-38128597 | None:intergenic | 45.0% | |
| TGTATGGTCCTTCGGAATCA+TGG | - | chr4.4:38127937-38127956 | None:intergenic | 45.0% | |
| ! | ACCCGTACTCATGATTTGGA+CGG | + | chr4.4:38128304-38128323 | MS.gene45697:CDS | 45.0% |
| ! | ACGAGCCTTATCTTTGGTGT+TGG | - | chr4.4:38128182-38128201 | None:intergenic | 45.0% |
| ! | ACGGGCCTTATCTGTATTGT+AGG | - | chr4.4:38128398-38128417 | None:intergenic | 45.0% |
| ! | CTCATGCTCATGATTTGGAC+GGG | + | chr4.4:38127981-38128000 | MS.gene45697:CDS | 45.0% |
| ! | CTCGTACTCATGATTTGGAC+GGG | + | chr4.4:38128197-38128216 | MS.gene45697:CDS | 45.0% |
| ! | GCTCGTACTCATGATTTGGA+CGG | + | chr4.4:38128196-38128215 | MS.gene45697:CDS | 45.0% |
| ! | TAAGGTGCCTCCTCATGATT+TGG | + | chr4.4:38128084-38128103 | MS.gene45697:CDS | 45.0% |
| ! | TGCCTCCTCATGATTTGGAT+GGG | + | chr4.4:38128089-38128108 | MS.gene45697:CDS | 45.0% |
| !! | ATTTTGGAGAGGGATAGCTG+AGG | - | chr4.4:38129277-38129296 | None:intergenic | 45.0% |
| !! | ATTTTGGTCTCCCCTGTGAT+GGG | - | chr4.4:38129159-38129178 | None:intergenic | 45.0% |
| !! | GATTCAAGTTGGAAGATCGG+GGG | - | chr4.4:38128903-38128922 | None:intergenic | 45.0% |
| !! | TTTTGGAGAGGGATAGCTGA+GGG | - | chr4.4:38129276-38129295 | None:intergenic | 45.0% |
| !!! | TATTTTGGTCTCCCCTGTGA+TGG | - | chr4.4:38129160-38129179 | None:intergenic | 45.0% |
| !!! | TTAAATATATTAGTTTTTTT+AGG | + | chr4.4:38126824-38126843 | MS.gene45697:intron | 5.0% |
| ACAGGGAAGAAGTGGCAAAC+TGG | - | chr4.4:38129552-38129571 | None:intergenic | 50.0% | |
| ACCCGTACCCATGATTCTGA+AGG | + | chr4.4:38128574-38128593 | MS.gene45697:CDS | 50.0% | |
| ACTCGTACCCATGATTCCGA+AGG | + | chr4.4:38127926-38127945 | MS.gene45697:CDS | 50.0% | |
| CCCGTCCAAATCATGAGTAC+GGG | - | chr4.4:38128200-38128219 | None:intergenic | 50.0% | |
| GGGATGGCAAGATACCCATT+TGG | - | chr4.4:38129337-38129356 | None:intergenic | 50.0% | |
| TCAACCGAGCTATGCTCACA+GGG | + | chr4.4:38127150-38127169 | MS.gene45697:intron | 50.0% | |
| TGAGCATAGCTCGGTTGACA+GGG | - | chr4.4:38127148-38127167 | None:intergenic | 50.0% | |
| TGGCTCGAGGAGAATCTTCA+GGG | - | chr4.4:38129098-38129117 | None:intergenic | 50.0% | |
| TTCAGAATCATGGGTACGGG+TGG | - | chr4.4:38128575-38128594 | None:intergenic | 50.0% | |
| TTCGGAATCATGGGTACGAG+TGG | - | chr4.4:38127927-38127946 | None:intergenic | 50.0% | |
| ! | AAGTGAATAAGTGGGGCGTC+CGG | + | chr4.4:38127084-38127103 | MS.gene45697:intron | 50.0% |
| ! | CCCGTACTCATGATTTGGAC+GGG | + | chr4.4:38128305-38128324 | MS.gene45697:CDS | 50.0% |
| ! | GTGCCTCCTCATGATTTGGA+TGG | + | chr4.4:38128088-38128107 | MS.gene45697:CDS | 50.0% |
| ! | TGTCTCATGGATTTGGCTCG+AGG | - | chr4.4:38129111-38129130 | None:intergenic | 50.0% |
| ! | TTGGCTCGAGGAGAATCTTC+AGG | - | chr4.4:38129099-38129118 | None:intergenic | 50.0% |
| !!! | GCCACCTGTGTGAGGTTTTT+TGG | - | chr4.4:38128701-38128720 | None:intergenic | 50.0% |
| AGAGGGATAGCTGAGGGTGA+TGG | - | chr4.4:38129270-38129289 | None:intergenic | 55.0% | |
| CCATTGTAGCCACCTGTGTG+AGG | - | chr4.4:38128709-38128728 | None:intergenic | 55.0% | |
| CCTCACACAGGTGGCTACAA+TGG | + | chr4.4:38128706-38128725 | MS.gene45697:CDS | 55.0% | |
| GAGGGATAGCTGAGGGTGAT+GGG | - | chr4.4:38129269-38129288 | None:intergenic | 55.0% | |
| GCGATAGCATCAGAAGCCTG+AGG | - | chr4.4:38129594-38129613 | None:intergenic | 55.0% | |
| GGCCCATCCAAATCATGAGG+AGG | - | chr4.4:38128094-38128113 | None:intergenic | 55.0% | |
| GTACAAGGCCCACACACAAC+TGG | + | chr4.4:38127833-38127852 | MS.gene45697:CDS | 55.0% | |
| GTCAACCGAGCTATGCTCAC+AGG | + | chr4.4:38127149-38127168 | MS.gene45697:intron | 55.0% | |
| GTGAGCATAGCTCGGTTGAC+AGG | - | chr4.4:38127149-38127168 | None:intergenic | 55.0% | |
| GTGTCCCTGTGAGCATAGCT+CGG | - | chr4.4:38127157-38127176 | None:intergenic | 55.0% | |
| ! | AGTGAATAAGTGGGGCGTCC+GGG | + | chr4.4:38127085-38127104 | MS.gene45697:intron | 55.0% |
| !! | AGCTGAGGGTGATGGGTTGT+TGG | - | chr4.4:38129262-38129281 | None:intergenic | 55.0% |
| ! | GTGAATAAGTGGGGCGTCCG+GGG | + | chr4.4:38127086-38127105 | MS.gene45697:intron | 60.0% |
| GGGGTCGGGAATTCGAACCC+CGG | - | chr4.4:38127106-38127125 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 38126553 | 38129620 | 38126553 | ID=MS.gene45697 |
| chr4.4 | mRNA | 38126553 | 38129620 | 38126553 | ID=MS.gene45697.t1;Parent=MS.gene45697 |
| chr4.4 | exon | 38126553 | 38126606 | 38126553 | ID=MS.gene45697.t1.exon1;Parent=MS.gene45697.t1 |
| chr4.4 | CDS | 38126553 | 38126606 | 38126553 | ID=cds.MS.gene45697.t1;Parent=MS.gene45697.t1 |
| chr4.4 | exon | 38127800 | 38129620 | 38127800 | ID=MS.gene45697.t1.exon2;Parent=MS.gene45697.t1 |
| chr4.4 | CDS | 38127800 | 38129620 | 38127800 | ID=cds.MS.gene45697.t1;Parent=MS.gene45697.t1 |
| Gene Sequence |
| Protein sequence |
