Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46609.t1 | XP_003599439.1 | 90.2 | 316 | 26 | 1 | 1 | 316 | 1 | 311 | 4.80E-144 | 520.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46609.t1 | Q9ZSL6 | 53.1 | 211 | 97 | 1 | 108 | 316 | 114 | 324 | 6.1e-55 | 216.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46609.t1 | G7J0X0 | 90.2 | 316 | 26 | 1 | 1 | 316 | 1 | 311 | 3.5e-144 | 520.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049993 | MS.gene46609 | 0.811774 | 5.92E-51 | -1.69E-46 |
| MS.gene050464 | MS.gene46609 | 0.802785 | 4.76E-49 | -1.69E-46 |
| MS.gene050529 | MS.gene46609 | 0.809224 | 2.10E-50 | -1.69E-46 |
| MS.gene050670 | MS.gene46609 | 0.818086 | 2.35E-52 | -1.69E-46 |
| MS.gene051525 | MS.gene46609 | 0.840396 | 8.92E-58 | -1.69E-46 |
| MS.gene051582 | MS.gene46609 | 0.827598 | 1.43E-54 | -1.69E-46 |
| MS.gene052011 | MS.gene46609 | -0.820811 | 5.63E-53 | -1.69E-46 |
| MS.gene052077 | MS.gene46609 | 0.818568 | 1.83E-52 | -1.69E-46 |
| MS.gene052134 | MS.gene46609 | 0.802248 | 6.14E-49 | -1.69E-46 |
| MS.gene052135 | MS.gene46609 | 0.802503 | 5.44E-49 | -1.69E-46 |
| MS.gene053330 | MS.gene46609 | 0.818095 | 2.34E-52 | -1.69E-46 |
| MS.gene053836 | MS.gene46609 | 0.800252 | 1.57E-48 | -1.69E-46 |
| MS.gene053928 | MS.gene46609 | 0.805548 | 1.27E-49 | -1.69E-46 |
| MS.gene053971 | MS.gene46609 | 0.800117 | 1.68E-48 | -1.69E-46 |
| MS.gene054110 | MS.gene46609 | 0.808846 | 2.53E-50 | -1.69E-46 |
| MS.gene054349 | MS.gene46609 | 0.806163 | 9.40E-50 | -1.69E-46 |
| MS.gene054719 | MS.gene46609 | 0.829578 | 4.76E-55 | -1.69E-46 |
| MS.gene055116 | MS.gene46609 | 0.816188 | 6.29E-52 | -1.69E-46 |
| MS.gene055369 | MS.gene46609 | 0.81299 | 3.21E-51 | -1.69E-46 |
| MS.gene05553 | MS.gene46609 | 0.849795 | 2.57E-60 | -1.69E-46 |
| MS.gene056407 | MS.gene46609 | 0.802016 | 6.85E-49 | -1.69E-46 |
| MS.gene058002 | MS.gene46609 | 0.80315 | 4.00E-49 | -1.69E-46 |
| MS.gene058142 | MS.gene46609 | 0.831082 | 2.04E-55 | -1.69E-46 |
| MS.gene058276 | MS.gene46609 | 0.805247 | 1.46E-49 | -1.69E-46 |
| MS.gene05907 | MS.gene46609 | 0.801689 | 8.00E-49 | -1.69E-46 |
| MS.gene059420 | MS.gene46609 | 0.814923 | 1.20E-51 | -1.69E-46 |
| MS.gene061049 | MS.gene46609 | 0.810123 | 1.35E-50 | -1.69E-46 |
| MS.gene061154 | MS.gene46609 | 0.82634 | 2.86E-54 | -1.69E-46 |
| MS.gene061159 | MS.gene46609 | 0.80403 | 2.63E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene032180 | MS.gene46609 | PPI |
| MS.gene46609 | MS.gene052009 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46609.t1 | MTR_3g033420 | 91.772 | 316 | 21 | 1 | 1 | 316 | 1 | 311 | 0.0 | 525 |
| MS.gene46609.t1 | MTR_7g101840 | 27.937 | 315 | 178 | 5 | 47 | 312 | 144 | 458 | 7.24e-33 | 128 |
| MS.gene46609.t1 | MTR_0172s0030 | 32.530 | 249 | 151 | 4 | 71 | 305 | 149 | 394 | 1.79e-27 | 112 |
| MS.gene46609.t1 | MTR_1g063850 | 31.193 | 218 | 140 | 3 | 100 | 312 | 250 | 462 | 1.41e-26 | 110 |
| MS.gene46609.t1 | MTR_3g033150 | 95.161 | 62 | 3 | 0 | 255 | 316 | 1 | 62 | 2.64e-26 | 102 |
| MS.gene46609.t1 | MTR_3g118290 | 39.706 | 136 | 82 | 0 | 172 | 307 | 335 | 470 | 4.31e-26 | 108 |
| MS.gene46609.t1 | MTR_1g007370 | 33.824 | 136 | 90 | 0 | 172 | 307 | 317 | 452 | 1.16e-19 | 90.1 |
| MS.gene46609.t1 | MTR_1g007370 | 40.449 | 89 | 53 | 0 | 161 | 249 | 306 | 394 | 1.87e-16 | 80.1 |
| MS.gene46609.t1 | MTR_3g090900 | 29.448 | 163 | 110 | 3 | 156 | 314 | 261 | 422 | 5.86e-11 | 63.5 |
| MS.gene46609.t1 | MTR_3g090900 | 29.448 | 163 | 110 | 3 | 156 | 314 | 261 | 422 | 7.76e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46609.t1 | AT5G13730 | 53.081 | 211 | 97 | 1 | 108 | 316 | 114 | 324 | 1.12e-68 | 221 |
| MS.gene46609.t1 | AT1G08540 | 31.502 | 273 | 175 | 4 | 48 | 313 | 207 | 474 | 1.38e-30 | 122 |
| MS.gene46609.t1 | AT2G36990 | 32.850 | 207 | 133 | 3 | 110 | 310 | 241 | 447 | 5.07e-30 | 120 |
| MS.gene46609.t1 | AT1G64860 | 31.967 | 244 | 152 | 4 | 71 | 305 | 154 | 392 | 1.19e-27 | 113 |
| MS.gene46609.t1 | AT1G64860 | 31.967 | 244 | 152 | 4 | 71 | 305 | 154 | 392 | 2.46e-27 | 112 |
| MS.gene46609.t1 | AT3G53920 | 29.442 | 197 | 133 | 3 | 119 | 309 | 275 | 471 | 9.13e-17 | 81.6 |
| MS.gene46609.t1 | AT3G53920 | 33.824 | 136 | 85 | 2 | 119 | 249 | 275 | 410 | 5.74e-16 | 78.6 |
Find 54 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCAAAGTTTGGTACAAATT+TGG | 0.082820 | 3.3:-24285665 | MS.gene46609:CDS |
| AGCTTCATCCACAGCATTAT+TGG | 0.167481 | 3.3:+24285591 | None:intergenic |
| GACAGTTTACATCCTCTATT+TGG | 0.181620 | 3.3:+24284389 | None:intergenic |
| GAATAAGAATGTGTAGTTAT+TGG | 0.274058 | 3.3:+24283376 | None:intergenic |
| TCAAAGTTTGGTACAAATTT+GGG | 0.281698 | 3.3:-24285664 | MS.gene46609:CDS |
| ATTGCTTTGTCCAATGAAAT+TGG | 0.312986 | 3.3:+24283454 | None:intergenic |
| TTTGGTACAAATTTGGGTTA+TGG | 0.319268 | 3.3:-24285658 | MS.gene46609:CDS |
| TATTTATAGGGAGAAAAGTA+TGG | 0.343959 | 3.3:-24283613 | MS.gene46609:intron |
| ACTATTACACCCTCAAAGTT+TGG | 0.347291 | 3.3:-24285676 | MS.gene46609:CDS |
| AATGCTGCAGCAGCTGGAAT+TGG | 0.367985 | 3.3:-24285565 | MS.gene46609:CDS |
| AACTGTCTACATATGTTTAC+TGG | 0.372719 | 3.3:-24284373 | MS.gene46609:CDS |
| GGAACCATTGGACTTCTTCA+TGG | 0.384588 | 3.3:-24284428 | MS.gene46609:CDS |
| GAGCAGACAACCAATTTCAT+TGG | 0.388067 | 3.3:-24283464 | MS.gene46609:CDS |
| GTCTTTAGAGATGGAAAAGT+TGG | 0.408480 | 3.3:+24285727 | None:intergenic |
| GCTAGAAATGCTGCAGCAGC+TGG | 0.420165 | 3.3:-24285571 | MS.gene46609:CDS |
| CAAATTTGTACCAAACTTTG+AGG | 0.431037 | 3.3:+24285666 | None:intergenic |
| CACCGGTAATCTGACTAATC+TGG | 0.431896 | 3.3:+24284310 | None:intergenic |
| AAGGGAATTATGCTATTTCA+AGG | 0.439184 | 3.3:-24284675 | MS.gene46609:CDS |
| ATGACATGAGGAGGAAGAGA+AGG | 0.448523 | 3.3:-24285522 | MS.gene46609:CDS |
| GTCCAGATTAGTCAGATTAC+CGG | 0.449365 | 3.3:-24284312 | MS.gene46609:intron |
| CAGTTTCTTGAGGCAGAAAG+AGG | 0.451248 | 3.3:-24285446 | MS.gene46609:CDS |
| TTGAGGCAGAAAGAGGTTGT+AGG | 0.456214 | 3.3:-24285439 | MS.gene46609:CDS |
| GAGAAATTTGATCCAAATAG+AGG | 0.478360 | 3.3:-24284401 | MS.gene46609:CDS |
| TTTAACCAGGAAGGAACCAT+TGG | 0.503437 | 3.3:-24284440 | MS.gene46609:intron |
| TGAGCTTTGTTTATGTCTCA+AGG | 0.505679 | 3.3:-24285377 | MS.gene46609:intron |
| AAATTTGTACCAAACTTTGA+GGG | 0.511674 | 3.3:+24285667 | None:intergenic |
| TGAGGCAGAAAGAGGTTGTA+GGG | 0.522827 | 3.3:-24285438 | MS.gene46609:CDS |
| TCAATCGCAGCACGTTATCA+AGG | 0.523165 | 3.3:-24284559 | MS.gene46609:CDS |
| AACTTTGAGGGTGTAATAGT+AGG | 0.530053 | 3.3:+24285679 | None:intergenic |
| TCAGCAATTTCATTATATGT+CGG | 0.554776 | 3.3:+24283532 | None:intergenic |
| GAATGGTGTGTCTTTAGAGA+TGG | 0.559338 | 3.3:+24285718 | None:intergenic |
| CAGCACGTTATCAAGGCAAA+GGG | 0.567899 | 3.3:-24284552 | MS.gene46609:CDS |
| GCAGCACGTTATCAAGGCAA+AGG | 0.568734 | 3.3:-24284553 | MS.gene46609:CDS |
| ATAGGGAGAAAAGTATGGAA+TGG | 0.569556 | 3.3:-24283608 | MS.gene46609:intron |
| CAAAGAATGACAGAACATGA+AGG | 0.577006 | 3.3:-24284694 | MS.gene46609:CDS |
| TGCTCCATGAAGAAGTCCAA+TGG | 0.596543 | 3.3:+24284424 | None:intergenic |
| AAAGAATGACAGAACATGAA+GGG | 0.599007 | 3.3:-24284693 | MS.gene46609:CDS |
| ACAAGGCATGATTAAAGCTG+TGG | 0.600992 | 3.3:-24284342 | MS.gene46609:CDS |
| TTGTAGGGTCTGTGACATCA+CGG | 0.602646 | 3.3:-24285423 | MS.gene46609:CDS |
| TGTCTACATATGTTTACTGG+TGG | 0.602941 | 3.3:-24284370 | MS.gene46609:CDS |
| TGGAAGTGATGTAAGAGACA+TGG | 0.620101 | 3.3:+24285747 | None:intergenic |
| TCAGAGCAACTTAATACTGA+AGG | 0.620679 | 3.3:-24283425 | MS.gene46609:CDS |
| GGAATTGGAAAAGAGTGCAT+AGG | 0.624120 | 3.3:-24285550 | MS.gene46609:CDS |
| GTTTACTGGTGGATCAAACA+AGG | 0.624324 | 3.3:-24284359 | MS.gene46609:CDS |
| GCATAGGAATTGATGACATG+AGG | 0.625461 | 3.3:-24285534 | MS.gene46609:CDS |
| ATATTCAGAACAGTTTCTTG+AGG | 0.629816 | 3.3:-24285456 | MS.gene46609:CDS |
| TGGTGATGCATTAGTCATTG+TGG | 0.630440 | 3.3:-24285638 | MS.gene46609:CDS |
| TAGGAATTGATGACATGAGG+AGG | 0.633436 | 3.3:-24285531 | MS.gene46609:CDS |
| AAGCATTCAAGATCTCATCC+AGG | 0.635236 | 3.3:-24284527 | MS.gene46609:intron |
| GACATATAATGAAATTGCTG+AGG | 0.644481 | 3.3:-24283530 | MS.gene46609:CDS |
| TGCATTAGCCAATAATGCTG+TGG | 0.663604 | 3.3:-24285599 | MS.gene46609:CDS |
| TCTTAAGACGAAGACTGAGG+CGG | 0.681542 | 3.3:-24283558 | MS.gene46609:CDS |
| AGATTAGCTCGTGATTATCG+CGG | 0.718368 | 3.3:-24284592 | MS.gene46609:CDS |
| ATGTCTTAAGACGAAGACTG+AGG | 0.725315 | 3.3:-24283561 | MS.gene46609:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTATATTATATTATAA+AGG | - | chr3.3:24283779-24283798 | MS.gene46609:intron | 0.0% |
| !!! | CTTTTTTATATTTTTCTTTG+TGG | - | chr3.3:24284823-24284842 | MS.gene46609:intron | 15.0% |
| !!! | TATAACAATGTTTAAAATTG+TGG | - | chr3.3:24284045-24284064 | MS.gene46609:intron | 15.0% |
| !!! | TTCTTTTTAATTGCAATAAA+GGG | + | chr3.3:24285208-24285227 | None:intergenic | 15.0% |
| !!! | TTTCTTTTTAATTGCAATAA+AGG | + | chr3.3:24285209-24285228 | None:intergenic | 15.0% |
| !! | AAAATTTGCATTATACAACA+TGG | + | chr3.3:24284247-24284266 | None:intergenic | 20.0% |
| !! | AATAAATCTTATGCTATGTT+TGG | - | chr3.3:24285167-24285186 | MS.gene46609:intron | 20.0% |
| !! | AATGGTTAATGAATATAACA+CGG | + | chr3.3:24284108-24284127 | None:intergenic | 20.0% |
| !! | AGAAAAAGAAGGAAAAATTT+GGG | - | chr3.3:24283606-24283625 | MS.gene46609:CDS | 20.0% |
| !! | CATAATTTATTTATCATCCA+CGG | + | chr3.3:24284082-24284101 | None:intergenic | 20.0% |
| !! | TATTATGCAATACTTCTATA+TGG | - | chr3.3:24285411-24285430 | MS.gene46609:CDS | 20.0% |
| !! | TTGAACATAATTGACATATA+TGG | - | chr3.3:24284130-24284149 | MS.gene46609:intron | 20.0% |
| !!! | ATTTGTTAAAGTTTCTCATT+AGG | - | chr3.3:24284630-24284649 | MS.gene46609:CDS | 20.0% |
| !!! | TGGTTAGTTTGTTATTTATA+GGG | - | chr3.3:24285480-24285499 | MS.gene46609:CDS | 20.0% |
| !!! | TTGGTTAGTTTGTTATTTAT+AGG | - | chr3.3:24285479-24285498 | MS.gene46609:CDS | 20.0% |
| ! | AAATTTGTACCAAACTTTGA+GGG | + | chr3.3:24283441-24283460 | None:intergenic | 25.0% |
| ! | AACTTCGAAATCAATTTGAA+TGG | + | chr3.3:24284167-24284186 | None:intergenic | 25.0% |
| ! | CTCCTTTAAATTACTATTCT+AGG | + | chr3.3:24283988-24284007 | None:intergenic | 25.0% |
| ! | GAATAAGAATGTGTAGTTAT+TGG | + | chr3.3:24285732-24285751 | None:intergenic | 25.0% |
| ! | GACTGTTTATTATGAATGTT+TGG | - | chr3.3:24285460-24285479 | MS.gene46609:CDS | 25.0% |
| ! | GAGAAAAAGAAGGAAAAATT+TGG | - | chr3.3:24283605-24283624 | MS.gene46609:CDS | 25.0% |
| ! | GTCCTAGAATAGTAATTTAA+AGG | - | chr3.3:24283983-24284002 | MS.gene46609:intron | 25.0% |
| ! | TATTTATAGGGAGAAAAGTA+TGG | - | chr3.3:24285492-24285511 | MS.gene46609:CDS | 25.0% |
| ! | TCAAAGTTTGGTACAAATTT+GGG | - | chr3.3:24283441-24283460 | MS.gene46609:CDS | 25.0% |
| ! | TCAGCAATTTCATTATATGT+CGG | + | chr3.3:24285576-24285595 | None:intergenic | 25.0% |
| ! | TGGAATGTGAATTTAAATCA+TGG | + | chr3.3:24284278-24284297 | None:intergenic | 25.0% |
| ! | TGTCAATTATGTTCAAAGAA+TGG | + | chr3.3:24284126-24284145 | None:intergenic | 25.0% |
| ! | TTTAATTCATTTAACCAGGA+AGG | - | chr3.3:24284656-24284675 | MS.gene46609:CDS | 25.0% |
| !! | AATTAGTATCTGAAATTGTC+CGG | + | chr3.3:24283880-24283899 | None:intergenic | 25.0% |
| !! | TTATATTTTTCTTTGTGGCA+GGG | - | chr3.3:24284828-24284847 | MS.gene46609:intron | 25.0% |
| !! | TTTATATTTTTCTTTGTGGC+AGG | - | chr3.3:24284827-24284846 | MS.gene46609:intron | 25.0% |
| !!! | AATATAAAAAAGTGTCTCAC+CGG | + | chr3.3:24284815-24284834 | None:intergenic | 25.0% |
| !!! | GCATTTTAATTCATTTAACC+AGG | - | chr3.3:24284652-24284671 | MS.gene46609:CDS | 25.0% |
| !!! | TACAATTTTAGGGACTAAAA+TGG | + | chr3.3:24283849-24283868 | None:intergenic | 25.0% |
| AAAGAATGACAGAACATGAA+GGG | - | chr3.3:24284412-24284431 | MS.gene46609:CDS | 30.0% | |
| AACTGTCTACATATGTTTAC+TGG | - | chr3.3:24284732-24284751 | MS.gene46609:intron | 30.0% | |
| ATATTCAGAACAGTTTCTTG+AGG | - | chr3.3:24283649-24283668 | MS.gene46609:intron | 30.0% | |
| ATGCATAATCCTGTTAGTAA+TGG | + | chr3.3:24284344-24284363 | None:intergenic | 30.0% | |
| ATTCACATTCCATTACTAAC+AGG | - | chr3.3:24284286-24284305 | MS.gene46609:intron | 30.0% | |
| ATTGCTTTGTCCAATGAAAT+TGG | + | chr3.3:24285654-24285673 | None:intergenic | 30.0% | |
| ATTGTGTGTTGAATAACAAC+AGG | - | chr3.3:24284362-24284381 | MS.gene46609:CDS | 30.0% | |
| CAAATTTGTACCAAACTTTG+AGG | + | chr3.3:24283442-24283461 | None:intergenic | 30.0% | |
| CTAAAATTGTAGACATCAAC+CGG | - | chr3.3:24283858-24283877 | MS.gene46609:intron | 30.0% | |
| CTCAAAGTTTGGTACAAATT+TGG | - | chr3.3:24283440-24283459 | MS.gene46609:CDS | 30.0% | |
| GACATATAATGAAATTGCTG+AGG | - | chr3.3:24285575-24285594 | MS.gene46609:CDS | 30.0% | |
| GAGAAATTTGATCCAAATAG+AGG | - | chr3.3:24284704-24284723 | MS.gene46609:CDS | 30.0% | |
| ! | AAGGAAAAATTTGGGATGTA+TGG | - | chr3.3:24283614-24283633 | MS.gene46609:intron | 30.0% |
| ! | CTCTATTTTCATACTCTCTT+TGG | - | chr3.3:24285348-24285367 | MS.gene46609:intron | 30.0% |
| ! | GTGAATTTTGTTGAAGTGAA+TGG | + | chr3.3:24283407-24283426 | None:intergenic | 30.0% |
| ! | TATATTTTTCTTTGTGGCAG+GGG | - | chr3.3:24284829-24284848 | MS.gene46609:intron | 30.0% |
| ! | TTTGGTACAAATTTGGGTTA+TGG | - | chr3.3:24283447-24283466 | MS.gene46609:CDS | 30.0% |
| !! | AAGGGAATTATGCTATTTCA+AGG | - | chr3.3:24284430-24284449 | MS.gene46609:CDS | 30.0% |
| !! | AATTTTAGGGACTAAAATGG+TGG | + | chr3.3:24283846-24283865 | None:intergenic | 30.0% |
| !! | ATTTTACAGCTATTCTGAGA+AGG | - | chr3.3:24284874-24284893 | MS.gene46609:intron | 30.0% |
| !! | GGTTGATGTCTACAATTTTA+GGG | + | chr3.3:24283859-24283878 | None:intergenic | 30.0% |
| !!! | GTTTTTAAGTTCAACTGAAG+AGG | - | chr3.3:24283704-24283723 | MS.gene46609:intron | 30.0% |
| ACTATTACACCCTCAAAGTT+TGG | - | chr3.3:24283429-24283448 | MS.gene46609:CDS | 35.0% | |
| CAAAGAATGACAGAACATGA+AGG | - | chr3.3:24284411-24284430 | MS.gene46609:CDS | 35.0% | |
| CTAAATTAGCCCACTCAAAT+TGG | + | chr3.3:24285135-24285154 | None:intergenic | 35.0% | |
| GACAGTTTACATCCTCTATT+TGG | + | chr3.3:24284719-24284738 | None:intergenic | 35.0% | |
| GCAAGAAATCCTGTTAGTAA+TGG | + | chr3.3:24284298-24284317 | None:intergenic | 35.0% | |
| GTGTTGAATAACAACAGGAA+GGG | - | chr3.3:24284367-24284386 | MS.gene46609:CDS | 35.0% | |
| TAAATGTGTTAGTATGCACC+TGG | + | chr3.3:24284599-24284618 | None:intergenic | 35.0% | |
| TCAGAGCAACTTAATACTGA+AGG | - | chr3.3:24285680-24285699 | MS.gene46609:CDS | 35.0% | |
| TGTCTACATATGTTTACTGG+TGG | - | chr3.3:24284735-24284754 | MS.gene46609:intron | 35.0% | |
| TGTGTTGAATAACAACAGGA+AGG | - | chr3.3:24284366-24284385 | MS.gene46609:CDS | 35.0% | |
| TGTTGAATAACAACAGGAAG+GGG | - | chr3.3:24284368-24284387 | MS.gene46609:CDS | 35.0% | |
| TTGTGGTTAATTATGTTCCG+TGG | - | chr3.3:24284062-24284081 | MS.gene46609:intron | 35.0% | |
| ! | AAAAACAACCATGTCGCTTA+AGG | + | chr3.3:24284995-24285014 | None:intergenic | 35.0% |
| ! | AACTTTGAGGGTGTAATAGT+AGG | + | chr3.3:24283429-24283448 | None:intergenic | 35.0% |
| ! | ATAGGGAGAAAAGTATGGAA+TGG | - | chr3.3:24285497-24285516 | MS.gene46609:CDS | 35.0% |
| ! | ATATTTTTCTTTGTGGCAGG+GGG | - | chr3.3:24284830-24284849 | MS.gene46609:intron | 35.0% |
| ! | GAAAAATTTGGGATGTATGG+TGG | - | chr3.3:24283617-24283636 | MS.gene46609:intron | 35.0% |
| ! | GTCTTTAGAGATGGAAAAGT+TGG | + | chr3.3:24283381-24283400 | None:intergenic | 35.0% |
| !! | CGGTTGATGTCTACAATTTT+AGG | + | chr3.3:24283860-24283879 | None:intergenic | 35.0% |
| !! | GATTTTAACCTTAAGCGACA+TGG | - | chr3.3:24284984-24285003 | MS.gene46609:intron | 35.0% |
| !! | TGAGCTTTGTTTATGTCTCA+AGG | - | chr3.3:24283728-24283747 | MS.gene46609:intron | 35.0% |
| AAGCATTCAAGATCTCATCC+AGG | - | chr3.3:24284578-24284597 | MS.gene46609:CDS | 40.0% | |
| AATAGAACTTGAAGACCCTG+AGG | + | chr3.3:24285103-24285122 | None:intergenic | 40.0% | |
| AATGGTTGCAAAAATCGCAG+AGG | - | chr3.3:24285515-24285534 | MS.gene46609:CDS | 40.0% | |
| ACAAGGCATGATTAAAGCTG+TGG | - | chr3.3:24284763-24284782 | MS.gene46609:intron | 40.0% | |
| AGCTTCATCCACAGCATTAT+TGG | + | chr3.3:24283517-24283536 | None:intergenic | 40.0% | |
| ATATGCTAAGCTAACCCACT+TGG | - | chr3.3:24285034-24285053 | MS.gene46609:intron | 40.0% | |
| ATGTCTTAAGACGAAGACTG+AGG | - | chr3.3:24285544-24285563 | MS.gene46609:CDS | 40.0% | |
| GAGCAGACAACCAATTTCAT+TGG | - | chr3.3:24285641-24285660 | MS.gene46609:CDS | 40.0% | |
| GGAAGAGAAGGAGAAAAAGA+AGG | - | chr3.3:24283595-24283614 | MS.gene46609:CDS | 40.0% | |
| TATGCTAAGCTAACCCACTT+GGG | - | chr3.3:24285035-24285054 | MS.gene46609:intron | 40.0% | |
| TGCATTAGCCAATAATGCTG+TGG | - | chr3.3:24283506-24283525 | MS.gene46609:CDS | 40.0% | |
| TTCCAACCAACCACATACAA+AGG | - | chr3.3:24285248-24285267 | MS.gene46609:intron | 40.0% | |
| TTTAACCAGGAAGGAACCAT+TGG | - | chr3.3:24284665-24284684 | MS.gene46609:CDS | 40.0% | |
| ! | AGATTAGCTCGTGATTATCG+CGG | - | chr3.3:24284513-24284532 | MS.gene46609:intron | 40.0% |
| ! | GAATGGTGTGTCTTTAGAGA+TGG | + | chr3.3:24283390-24283409 | None:intergenic | 40.0% |
| ! | GCATAGGAATTGATGACATG+AGG | - | chr3.3:24283571-24283590 | MS.gene46609:CDS | 40.0% |
| ! | GGAATTGGAAAAGAGTGCAT+AGG | - | chr3.3:24283555-24283574 | MS.gene46609:CDS | 40.0% |
| ! | GTCCAGATTAGTCAGATTAC+CGG | - | chr3.3:24284793-24284812 | MS.gene46609:intron | 40.0% |
| ! | GTTTACTGGTGGATCAAACA+AGG | - | chr3.3:24284746-24284765 | MS.gene46609:intron | 40.0% |
| ! | TAGGAATTGATGACATGAGG+AGG | - | chr3.3:24283574-24283593 | MS.gene46609:CDS | 40.0% |
| ! | TGGTGATGCATTAGTCATTG+TGG | - | chr3.3:24283467-24283486 | MS.gene46609:CDS | 40.0% |
| ! | TGGTTGGTTGGAATGACATT+TGG | + | chr3.3:24285241-24285260 | None:intergenic | 40.0% |
| ACAGAGCCTTTGTATGTGGT+TGG | + | chr3.3:24285257-24285276 | None:intergenic | 45.0% | |
| AGCCTTTGTATGTGGTTGGT+TGG | + | chr3.3:24285253-24285272 | None:intergenic | 45.0% | |
| ATGACATGAGGAGGAAGAGA+AGG | - | chr3.3:24283583-24283602 | MS.gene46609:CDS | 45.0% | |
| CACCGGTAATCTGACTAATC+TGG | + | chr3.3:24284798-24284817 | None:intergenic | 45.0% | |
| CAGCACGTTATCAAGGCAAA+GGG | - | chr3.3:24284553-24284572 | MS.gene46609:CDS | 45.0% | |
| CAGTTTCTTGAGGCAGAAAG+AGG | - | chr3.3:24283659-24283678 | MS.gene46609:intron | 45.0% | |
| CCAAACAGAGCCTTTGTATG+TGG | + | chr3.3:24285261-24285280 | None:intergenic | 45.0% | |
| CCACATACAAAGGCTCTGTT+TGG | - | chr3.3:24285258-24285277 | MS.gene46609:intron | 45.0% | |
| GGAACCATTGGACTTCTTCA+TGG | - | chr3.3:24284677-24284696 | MS.gene46609:CDS | 45.0% | |
| TCAATCGCAGCACGTTATCA+AGG | - | chr3.3:24284546-24284565 | MS.gene46609:CDS | 45.0% | |
| TCTTAAGACGAAGACTGAGG+CGG | - | chr3.3:24285547-24285566 | MS.gene46609:CDS | 45.0% | |
| TGAGGCAGAAAGAGGTTGTA+GGG | - | chr3.3:24283667-24283686 | MS.gene46609:intron | 45.0% | |
| TGCTCCATGAAGAAGTCCAA+TGG | + | chr3.3:24284684-24284703 | None:intergenic | 45.0% | |
| TGTTTGAACCACGTCTCTTG+AGG | - | chr3.3:24284898-24284917 | MS.gene46609:intron | 45.0% | |
| TTAGCCCACTCAAATTGGCA+CGG | + | chr3.3:24285130-24285149 | None:intergenic | 45.0% | |
| TTGAGGCAGAAAGAGGTTGT+AGG | - | chr3.3:24283666-24283685 | MS.gene46609:intron | 45.0% | |
| TTGTAGGGTCTGTGACATCA+CGG | - | chr3.3:24283682-24283701 | MS.gene46609:intron | 45.0% | |
| AATGCTGCAGCAGCTGGAAT+TGG | - | chr3.3:24283540-24283559 | MS.gene46609:CDS | 50.0% | |
| AGAACTTGAAGACCCTGAGG+AGG | + | chr3.3:24285100-24285119 | None:intergenic | 50.0% | |
| CCACGTCTCTTGAGGTTACA+AGG | - | chr3.3:24284906-24284925 | MS.gene46609:intron | 50.0% | |
| CCTTGTAACCTCAAGAGACG+TGG | + | chr3.3:24284909-24284928 | None:intergenic | 50.0% | |
| CTAAGCTAACCCACTTGGGT+TGG | - | chr3.3:24285039-24285058 | MS.gene46609:intron | 50.0% | |
| GAAGTCCAATGGTTCCTTCC+TGG | + | chr3.3:24284673-24284692 | None:intergenic | 50.0% | |
| GCAGCACGTTATCAAGGCAA+AGG | - | chr3.3:24284552-24284571 | MS.gene46609:CDS | 50.0% | |
| TAGCCCACTCAAATTGGCAC+GGG | + | chr3.3:24285129-24285148 | None:intergenic | 50.0% | |
| ! | GTGGTGTTGGATTGGGATCT+GGG | - | chr3.3:24285066-24285085 | MS.gene46609:intron | 50.0% |
| AGCCCACTCAAATTGGCACG+GGG | + | chr3.3:24285128-24285147 | None:intergenic | 55.0% | |
| CTCCCCGTGCCAATTTGAGT+GGG | - | chr3.3:24285123-24285142 | MS.gene46609:intron | 55.0% | |
| GATCCCAATCCAACACCACC+CGG | + | chr3.3:24285065-24285084 | None:intergenic | 55.0% | |
| GCTAGAAATGCTGCAGCAGC+TGG | - | chr3.3:24283534-24283553 | MS.gene46609:CDS | 55.0% | |
| TCTCCCCGTGCCAATTTGAG+TGG | - | chr3.3:24285122-24285141 | MS.gene46609:intron | 55.0% | |
| ! | GGTGGTGTTGGATTGGGATC+TGG | - | chr3.3:24285065-24285084 | MS.gene46609:intron | 55.0% |
| ! | TGGCCGGGTGGTGTTGGATT+GGG | - | chr3.3:24285059-24285078 | MS.gene46609:intron | 60.0% |
| ! | TGGGAGTGTGCTCCTCCTCA+GGG | - | chr3.3:24285085-24285104 | MS.gene46609:intron | 60.0% |
| ! | TTGGCCGGGTGGTGTTGGAT+TGG | - | chr3.3:24285058-24285077 | MS.gene46609:intron | 60.0% |
| !! | CTAACCCACTTGGGTTGGCC+GGG | - | chr3.3:24285044-24285063 | MS.gene46609:intron | 60.0% |
| !! | GCTAACCCACTTGGGTTGGC+CGG | - | chr3.3:24285043-24285062 | MS.gene46609:intron | 60.0% |
| ACCACCCGGCCAACCCAAGT+GGG | + | chr3.3:24285051-24285070 | None:intergenic | 65.0% | |
| ! | CTGGGAGTGTGCTCCTCCTC+AGG | - | chr3.3:24285084-24285103 | MS.gene46609:intron | 65.0% |
| !! | TTGGGTTGGCCGGGTGGTGT+TGG | - | chr3.3:24285053-24285072 | MS.gene46609:intron | 65.0% |
| CACCACCCGGCCAACCCAAG+TGG | + | chr3.3:24285052-24285071 | None:intergenic | 70.0% | |
| !! | ACCCACTTGGGTTGGCCGGG+TGG | - | chr3.3:24285047-24285066 | MS.gene46609:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 24283360 | 24285767 | 24283360 | ID=MS.gene46609 |
| chr3.3 | mRNA | 24283360 | 24285767 | 24283360 | ID=MS.gene46609.t1;Parent=MS.gene46609 |
| chr3.3 | exon | 24285378 | 24285767 | 24285378 | ID=MS.gene46609.t1.exon1;Parent=MS.gene46609.t1 |
| chr3.3 | CDS | 24285378 | 24285767 | 24285378 | ID=cds.MS.gene46609.t1;Parent=MS.gene46609.t1 |
| chr3.3 | exon | 24284528 | 24284743 | 24284528 | ID=MS.gene46609.t1.exon2;Parent=MS.gene46609.t1 |
| chr3.3 | CDS | 24284528 | 24284743 | 24284528 | ID=cds.MS.gene46609.t1;Parent=MS.gene46609.t1 |
| chr3.3 | exon | 24284313 | 24284453 | 24284313 | ID=MS.gene46609.t1.exon3;Parent=MS.gene46609.t1 |
| chr3.3 | CDS | 24284313 | 24284453 | 24284313 | ID=cds.MS.gene46609.t1;Parent=MS.gene46609.t1 |
| chr3.3 | exon | 24283360 | 24283626 | 24283360 | ID=MS.gene46609.t1.exon4;Parent=MS.gene46609.t1 |
| chr3.3 | CDS | 24283360 | 24283626 | 24283360 | ID=cds.MS.gene46609.t1;Parent=MS.gene46609.t1 |
| Gene Sequence |
| Protein sequence |
