Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46918.t1 | XP_003590329.1 | 94.9 | 293 | 13 | 1 | 1 | 293 | 1 | 291 | 9.50E-148 | 533.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46918.t1 | Q9ZSD4 | 71.1 | 291 | 81 | 1 | 1 | 291 | 1 | 288 | 6.7e-110 | 398.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46918.t1 | G7I8J4 | 94.9 | 293 | 13 | 1 | 1 | 293 | 1 | 291 | 6.8e-148 | 533.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04998 | MS.gene46918 | 0.864471 | 1.19E-64 | -1.69E-46 |
| MS.gene051184 | MS.gene46918 | 0.802996 | 4.30E-49 | -1.69E-46 |
| MS.gene051226 | MS.gene46918 | 0.858083 | 1.05E-62 | -1.69E-46 |
| MS.gene051819 | MS.gene46918 | 0.815309 | 9.87E-52 | -1.69E-46 |
| MS.gene051837 | MS.gene46918 | 0.846304 | 2.36E-59 | -1.69E-46 |
| MS.gene051959 | MS.gene46918 | 0.807008 | 6.23E-50 | -1.69E-46 |
| MS.gene054892 | MS.gene46918 | 0.831888 | 1.29E-55 | -1.69E-46 |
| MS.gene054893 | MS.gene46918 | 0.834686 | 2.60E-56 | -1.69E-46 |
| MS.gene057093 | MS.gene46918 | 0.867834 | 1.02E-65 | -1.69E-46 |
| MS.gene057167 | MS.gene46918 | 0.821355 | 4.22E-53 | -1.69E-46 |
| MS.gene057432 | MS.gene46918 | 0.813295 | 2.75E-51 | -1.69E-46 |
| MS.gene057622 | MS.gene46918 | 0.844113 | 9.24E-59 | -1.69E-46 |
| MS.gene06023 | MS.gene46918 | 0.808475 | 3.04E-50 | -1.69E-46 |
| MS.gene060446 | MS.gene46918 | 0.819687 | 1.02E-52 | -1.69E-46 |
| MS.gene060964 | MS.gene46918 | 0.857385 | 1.69E-62 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene53170 | MS.gene46918 | PPI |
| MS.gene46918 | MS.gene55383 | PPI |
| MS.gene46918 | MS.gene99692 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46918.t1 | MTR_1g056560 | 97.067 | 341 | 8 | 1 | 1 | 341 | 1 | 339 | 0.0 | 683 |
| MS.gene46918.t1 | MTR_1g056550 | 68.259 | 293 | 83 | 4 | 1 | 291 | 1 | 285 | 1.25e-144 | 410 |
| MS.gene46918.t1 | MTR_2g012270 | 56.536 | 306 | 119 | 2 | 1 | 306 | 1 | 292 | 2.10e-126 | 364 |
| MS.gene46918.t1 | MTR_4g090900 | 58.644 | 295 | 105 | 2 | 1 | 293 | 1 | 280 | 3.30e-124 | 359 |
| MS.gene46918.t1 | MTR_7g106420 | 56.314 | 293 | 109 | 2 | 1 | 293 | 1 | 274 | 1.22e-116 | 339 |
| MS.gene46918.t1 | MTR_5g012010 | 48.583 | 247 | 126 | 1 | 46 | 291 | 50 | 296 | 1.20e-83 | 256 |
| MS.gene46918.t1 | MTR_2g088700 | 42.173 | 313 | 173 | 3 | 1 | 313 | 1 | 305 | 2.40e-80 | 247 |
| MS.gene46918.t1 | MTR_6g028140 | 44.127 | 315 | 157 | 2 | 1 | 312 | 1 | 299 | 7.54e-79 | 243 |
| MS.gene46918.t1 | MTR_2g088700 | 43.770 | 313 | 168 | 3 | 1 | 313 | 1 | 305 | 3.38e-75 | 234 |
| MS.gene46918.t1 | MTR_5g020670 | 41.129 | 248 | 136 | 2 | 46 | 292 | 40 | 278 | 4.92e-60 | 195 |
| MS.gene46918.t1 | MTR_8g073900 | 34.109 | 129 | 63 | 1 | 46 | 174 | 40 | 146 | 1.24e-14 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46918.t1 | AT3G11820 | 69.836 | 305 | 83 | 2 | 39 | 335 | 5 | 308 | 9.18e-144 | 409 |
| MS.gene46918.t1 | AT3G11820 | 67.246 | 345 | 97 | 4 | 1 | 335 | 1 | 339 | 1.01e-143 | 410 |
| MS.gene46918.t1 | AT1G61290 | 57.516 | 306 | 116 | 3 | 1 | 306 | 1 | 292 | 2.76e-127 | 367 |
| MS.gene46918.t1 | AT1G61290 | 57.516 | 306 | 116 | 3 | 1 | 306 | 1 | 292 | 2.76e-127 | 367 |
| MS.gene46918.t1 | AT3G52400 | 62.222 | 315 | 115 | 2 | 1 | 315 | 1 | 311 | 1.12e-124 | 362 |
| MS.gene46918.t1 | AT1G11250 | 59.386 | 293 | 100 | 2 | 1 | 293 | 1 | 274 | 4.59e-124 | 358 |
| MS.gene46918.t1 | AT4G03330 | 57.388 | 291 | 113 | 2 | 1 | 291 | 1 | 280 | 3.25e-117 | 341 |
| MS.gene46918.t1 | AT3G03800 | 44.904 | 314 | 157 | 2 | 1 | 312 | 1 | 300 | 8.99e-81 | 248 |
| MS.gene46918.t1 | AT3G03800 | 44.904 | 314 | 157 | 2 | 1 | 312 | 1 | 300 | 8.99e-81 | 248 |
| MS.gene46918.t1 | AT1G08560 | 42.177 | 294 | 159 | 4 | 1 | 291 | 1 | 286 | 2.92e-76 | 237 |
| MS.gene46918.t1 | AT5G08080 | 45.223 | 314 | 159 | 2 | 1 | 314 | 1 | 301 | 3.16e-71 | 224 |
| MS.gene46918.t1 | AT5G08080 | 45.223 | 314 | 159 | 2 | 1 | 314 | 1 | 301 | 3.16e-71 | 224 |
| MS.gene46918.t1 | AT5G08080 | 43.692 | 325 | 159 | 4 | 1 | 314 | 1 | 312 | 4.81e-69 | 219 |
| MS.gene46918.t1 | AT2G18260 | 39.773 | 264 | 152 | 2 | 46 | 309 | 46 | 302 | 2.19e-60 | 196 |
| MS.gene46918.t1 | AT2G18260 | 39.773 | 264 | 152 | 2 | 46 | 309 | 46 | 302 | 2.19e-60 | 196 |
| MS.gene46918.t1 | AT5G08080 | 40.376 | 213 | 114 | 2 | 1 | 213 | 1 | 200 | 4.61e-34 | 125 |
| MS.gene46918.t1 | AT5G08080 | 40.376 | 213 | 114 | 2 | 1 | 213 | 1 | 200 | 4.61e-34 | 125 |
Find 106 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAATGCGGCGAACCGGAATT+TGG | 0.208941 | 1.1:-43927833 | MS.gene46918:CDS |
| TCCTGCTCCTGCTCCGGTTC+TGG | 0.238107 | 1.1:+43928083 | None:intergenic |
| CCCGTCACCTCCTCCTCCTT+CGG | 0.261959 | 1.1:-43926020 | MS.gene46918:CDS |
| CCTCTCTTGAATTTCATTGA+TGG | 0.265261 | 1.1:+43926366 | None:intergenic |
| ACAAGGCAGGGGAAGAATTC+TGG | 0.274465 | 1.1:-43926392 | MS.gene46918:CDS |
| GAAGAAGTTGAAGGATTCTA+TGG | 0.286048 | 1.1:-43927749 | MS.gene46918:CDS |
| TCCATTTCCTTGTGTTTCTC+TGG | 0.322362 | 1.1:+43926167 | None:intergenic |
| TTTAGCATCGTGAACCGTTT+TGG | 0.332874 | 1.1:+43927954 | None:intergenic |
| CCGTCACCTCCTCCTCCTTC+GGG | 0.338871 | 1.1:-43926019 | MS.gene46918:CDS |
| GTCCACATCCTTCCAAATTC+CGG | 0.344060 | 1.1:+43927821 | None:intergenic |
| TAGAAGTATAATACAATAAC+AGG | 0.363828 | 1.1:+43926144 | None:intergenic |
| TTGAATTGCTTTCTGAAGAA+AGG | 0.380131 | 1.1:+43926417 | None:intergenic |
| GCCAGAACCGGAGCAGGAGC+AGG | 0.387573 | 1.1:-43928084 | MS.gene46918:CDS |
| CCGAAGGAGGAGGAGGTGAC+GGG | 0.392162 | 1.1:+43926020 | None:intergenic |
| ACAGTTTCAAGGTGAGCAAT+TGG | 0.421621 | 1.1:-43926269 | MS.gene46918:CDS |
| GCCGGTGCCGGAGCCAGAAC+CGG | 0.424735 | 1.1:-43928096 | MS.gene46918:CDS |
| ACGAGGAGTTCGGTGGTGAA+TGG | 0.443962 | 1.1:-43927778 | MS.gene46918:CDS |
| CCTTGCAGTTTGTAACTGTT+CGG | 0.445129 | 1.1:+43926195 | None:intergenic |
| CCCGAAGGAGGAGGAGGTGA+CGG | 0.445219 | 1.1:+43926019 | None:intergenic |
| AAAGATCTAATGCGGCGAAC+CGG | 0.447098 | 1.1:-43927840 | MS.gene46918:CDS |
| TCCTGCTCCGGTTCTGGCTC+CGG | 0.449585 | 1.1:+43928089 | None:intergenic |
| CGAGGAGTTCGGTGGTGAAT+GGG | 0.450137 | 1.1:-43927777 | MS.gene46918:CDS |
| AATGATAGTGGAGGCGGTGG+GGG | 0.457534 | 1.1:-43926070 | MS.gene46918:CDS |
| ACCAGAGAAACACAAGGAAA+TGG | 0.460665 | 1.1:-43926168 | MS.gene46918:CDS |
| CGTTAGTCTTTGAAAGTCGT+TGG | 0.461595 | 1.1:+43927983 | None:intergenic |
| TCCGGTTCTGGCTCCGGCAC+CGG | 0.466567 | 1.1:+43928095 | None:intergenic |
| TCTGCCTCCTGCTCCTGCTC+CGG | 0.468907 | 1.1:+43928077 | None:intergenic |
| GTCGGACCGGACGAGGAGTT+CGG | 0.470451 | 1.1:-43927788 | MS.gene46918:CDS |
| CCATGGCAACATAATGATAG+TGG | 0.472933 | 1.1:-43926082 | MS.gene46918:CDS |
| CATAATGATAGTGGAGGCGG+TGG | 0.476400 | 1.1:-43926073 | MS.gene46918:CDS |
| CTTGATCTATTGATCTCTAC+TGG | 0.477120 | 1.1:-43927625 | MS.gene46918:intron |
| GCCGGAGCCAGAACCGGAGC+AGG | 0.479795 | 1.1:-43928090 | MS.gene46918:CDS |
| CCACTATCATTATGTTGCCA+TGG | 0.481591 | 1.1:+43926082 | None:intergenic |
| AGTTTCTGTGGCGTTGAAGA+AGG | 0.484796 | 1.1:-43927896 | MS.gene46918:CDS |
| AAGCAATTCAAGAACAAGGC+AGG | 0.485542 | 1.1:-43926405 | MS.gene46918:CDS |
| ACAGTTATGGTACAGTTTCA+AGG | 0.486936 | 1.1:-43926280 | MS.gene46918:CDS |
| CGAAGGAGGAGGAGGTGACG+GGG | 0.489563 | 1.1:+43926021 | None:intergenic |
| GACCGGGTTCGTCGTCGGAC+CGG | 0.493595 | 1.1:-43927801 | MS.gene46918:CDS |
| TCGTAATAACTTCCCGCAAA+CGG | 0.494632 | 1.1:+43927716 | None:intergenic |
| TCTATGACGTGGTGCCGGTC+CGG | 0.496348 | 1.1:+43928132 | None:intergenic |
| ATGACAGACGGTGCCGGTGC+CGG | 0.505969 | 1.1:-43928108 | MS.gene46918:CDS |
| TCATCTCTATGACGTGGTGC+CGG | 0.506175 | 1.1:+43928127 | None:intergenic |
| GTCCGGTCCGACGACGAACC+CGG | 0.508930 | 1.1:+43927799 | None:intergenic |
| AGATCAAGAGTCTTATCATC+AGG | 0.511696 | 1.1:+43927640 | None:intergenic |
| GAATTTGGAAGGATGTGGAC+CGG | 0.521500 | 1.1:-43927818 | MS.gene46918:CDS |
| TAGTCTTTGAAAGTCGTTGG+TGG | 0.523923 | 1.1:+43927986 | None:intergenic |
| CTTGATCGTGGTTCTTGCCA+CGG | 0.525394 | 1.1:-43926110 | MS.gene46918:CDS |
| GTTCCTCGACATGACAGTTA+TGG | 0.527074 | 1.1:-43926293 | MS.gene46918:CDS |
| CTGTCATGTCGAGGAACACT+TGG | 0.530452 | 1.1:+43926299 | None:intergenic |
| AGAACCGGAGCAGGAGCAGG+AGG | 0.533935 | 1.1:-43928081 | MS.gene46918:CDS |
| GTTCGTCGTCGGACCGGACG+AGG | 0.534035 | 1.1:-43927795 | MS.gene46918:CDS |
| TGGGTTGAAGAAGAAGTTGA+AGG | 0.539071 | 1.1:-43927758 | MS.gene46918:CDS |
| GAAGCTGAAGCTGGAGGCGT+TGG | 0.540329 | 1.1:-43927863 | MS.gene46918:CDS |
| TCACCACCGAACTCCTCGTC+CGG | 0.541854 | 1.1:+43927782 | None:intergenic |
| GACTAACGAACAAACCAAAA+CGG | 0.542337 | 1.1:-43927968 | MS.gene46918:CDS |
| GAAGGAGCTTCGTTCACGTA+TGG | 0.543242 | 1.1:-43927926 | MS.gene46918:CDS |
| GAAGATGGTGAAGCTGAAGC+TGG | 0.544305 | 1.1:-43927872 | MS.gene46918:CDS |
| GCATGACGCTGTCAAAGACT+TGG | 0.549313 | 1.1:-43926344 | MS.gene46918:CDS |
| AACCGGAATTTGGAAGGATG+TGG | 0.550139 | 1.1:-43927823 | MS.gene46918:CDS |
| TAATGATAGTGGAGGCGGTG+GGG | 0.551632 | 1.1:-43926071 | MS.gene46918:CDS |
| ACGAGCTCGCCCTCGCCACA+TGG | 0.555170 | 1.1:+43926233 | None:intergenic |
| GCGAAGAAGTTTCACCGGAC+CGG | 0.559293 | 1.1:-43928146 | MS.gene46918:CDS |
| TAAGTACCACCCGAAGGAGG+AGG | 0.565613 | 1.1:+43926010 | None:intergenic |
| AGACTTGGAGAAGAGTCTAC+TGG | 0.566833 | 1.1:-43926329 | MS.gene46918:CDS |
| GTACCACCCGAAGGAGGAGG+AGG | 0.568216 | 1.1:+43926013 | None:intergenic |
| ATTGATCATTGTCTTGATCG+TGG | 0.570829 | 1.1:-43926122 | MS.gene46918:CDS |
| AATTTGGAAGGATGTGGACC+GGG | 0.572538 | 1.1:-43927817 | MS.gene46918:CDS |
| AGCAATTCAAGAACAAGGCA+GGG | 0.573394 | 1.1:-43926404 | MS.gene46918:CDS |
| GGCGTTGAAGAAGGCGAAGA+TGG | 0.575371 | 1.1:-43927887 | MS.gene46918:CDS |
| CAGAAAGCAATTCAAGAACA+AGG | 0.578887 | 1.1:-43926409 | MS.gene46918:CDS |
| CAACATAATGATAGTGGAGG+CGG | 0.579137 | 1.1:-43926076 | MS.gene46918:CDS |
| ATGTGGACCGGGTTCGTCGT+CGG | 0.579640 | 1.1:-43927806 | MS.gene46918:CDS |
| AAAACGGTTCACGATGCTAA+AGG | 0.580222 | 1.1:-43927952 | MS.gene46918:CDS |
| AAATTCTTCGACGACGTCGA+AGG | 0.582409 | 1.1:-43928042 | MS.gene46918:CDS |
| ATAATGATAGTGGAGGCGGT+GGG | 0.590164 | 1.1:-43926072 | MS.gene46918:CDS |
| GCGGCGAACCGGAATTTGGA+AGG | 0.593533 | 1.1:-43927829 | MS.gene46918:CDS |
| CCGTAGCGAAGAAGTTTCAC+CGG | 0.599567 | 1.1:-43928151 | MS.gene46918:CDS |
| GCAATTCAAGAACAAGGCAG+GGG | 0.612361 | 1.1:-43926403 | MS.gene46918:CDS |
| TATCGAGAGCCATGTGGCGA+GGG | 0.613532 | 1.1:-43926242 | MS.gene46918:CDS |
| TCACGATGCTAAAGGAGTGA+AGG | 0.617381 | 1.1:-43927944 | MS.gene46918:CDS |
| GAAGGAGGAGGAGGTGACGG+GGG | 0.620690 | 1.1:+43926022 | None:intergenic |
| ATAGAGATGACAGACGGTGC+CGG | 0.620946 | 1.1:-43928114 | MS.gene46918:CDS |
| GCGAGCTCGTTTGTGCACAC+TGG | 0.621398 | 1.1:-43926220 | MS.gene46918:CDS |
| CGTCGTCGAAGAATTTGTCG+AGG | 0.622912 | 1.1:+43928049 | None:intergenic |
| ATATCGAGAGCCATGTGGCG+AGG | 0.623389 | 1.1:-43926243 | MS.gene46918:CDS |
| CCGGTGAAACTTCTTCGCTA+CGG | 0.624728 | 1.1:+43928151 | None:intergenic |
| TTCTTGCCACGGTGAAACCA+TGG | 0.631742 | 1.1:-43926099 | MS.gene46918:CDS |
| GATGGTGAAGCTGAAGCTGG+AGG | 0.632553 | 1.1:-43927869 | MS.gene46918:CDS |
| AAAATGAACAACTTATTCAG+CGG | 0.633088 | 1.1:-43928189 | MS.gene46918:CDS |
| TCACCTCCTCCTCCTTCGGG+TGG | 0.636070 | 1.1:-43926016 | MS.gene46918:CDS |
| CGTCTGTCATCTCTATGACG+TGG | 0.649563 | 1.1:+43928121 | None:intergenic |
| TATGGACGAAGAAGTTTCTG+TGG | 0.652355 | 1.1:-43927908 | MS.gene46918:CDS |
| CCGAACAGTTACAAACTGCA+AGG | 0.655391 | 1.1:-43926195 | MS.gene46918:CDS |
| GATTAAGTACCACCCGAAGG+AGG | 0.656702 | 1.1:+43926007 | None:intergenic |
| GGCGTTGGAAAGATCTAATG+CGG | 0.661113 | 1.1:-43927848 | MS.gene46918:CDS |
| GTACCATAACTGTCATGTCG+AGG | 0.662556 | 1.1:+43926290 | None:intergenic |
| CCATCAATGAAATTCAAGAG+AGG | 0.665676 | 1.1:-43926366 | MS.gene46918:CDS |
| TGGCAACATAATGATAGTGG+AGG | 0.674274 | 1.1:-43926079 | MS.gene46918:CDS |
| GGACCGGACGAGGAGTTCGG+TGG | 0.678230 | 1.1:-43927785 | MS.gene46918:CDS |
| CACGTCATAGAGATGACAGA+CGG | 0.686011 | 1.1:-43928120 | MS.gene46918:CDS |
| TAAGATTAAGTACCACCCGA+AGG | 0.686561 | 1.1:+43926004 | None:intergenic |
| GGAAGCACCAGAGAAACACA+AGG | 0.690964 | 1.1:-43926174 | MS.gene46918:CDS |
| TTTGCGGGAAGTTATTACGA+CGG | 0.707869 | 1.1:-43927713 | MS.gene46918:CDS |
| AGTATAGAGAGACTGTTCAA+CGG | 0.733726 | 1.1:-43927690 | MS.gene46918:CDS |
| GGATGATATCGAGAGCCATG+TGG | 0.741101 | 1.1:-43926248 | MS.gene46918:CDS |
| ATGTTGCCATGGTTTCACCG+TGG | 0.746888 | 1.1:+43926093 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAAAACTAATATAATAAC+TGG | - | chr1.1:43926808-43926827 | MS.gene46918:intron | 10.0% |
| !! | TTTGATAAAAATTTATTAGT+AGG | - | chr1.1:43926723-43926742 | MS.gene46918:intron | 10.0% |
| !! | AAATTTATTAGTAGGTTAAT+TGG | - | chr1.1:43926731-43926750 | MS.gene46918:intron | 15.0% |
| !! | AAAACTAATATAATAACTGG+TGG | - | chr1.1:43926811-43926830 | MS.gene46918:intron | 20.0% |
| !!! | GTATGAATGTTTTAAAATCT+AGG | - | chr1.1:43926665-43926684 | MS.gene46918:intron | 20.0% |
| !!! | TAGAAGTATAATACAATAAC+AGG | + | chr1.1:43928054-43928073 | None:intergenic | 20.0% |
| !!! | TTAAAGATAACTTGTTTGTT+GGG | - | chr1.1:43927647-43927666 | MS.gene46918:CDS | 20.0% |
| !!! | TTAATTGGTGTTTTAGATTA+TGG | - | chr1.1:43926746-43926765 | MS.gene46918:intron | 20.0% |
| !!! | TTTAAAGATAACTTGTTTGT+TGG | - | chr1.1:43927646-43927665 | MS.gene46918:CDS | 20.0% |
| !!! | TTTGTCTTTTAATTAAGTTC+AGG | - | chr1.1:43927694-43927713 | MS.gene46918:CDS | 20.0% |
| ! | ATGTTTACGATAATTTGATG+TGG | - | chr1.1:43926613-43926632 | MS.gene46918:intron | 25.0% |
| GAACAAAACTGAATGTAATC+CGG | + | chr1.1:43926991-43927010 | None:intergenic | 30.0% | |
| TATAATAACTGGTGGAGAAT+TGG | - | chr1.1:43926819-43926838 | MS.gene46918:intron | 30.0% | |
| TTGGTATAAAACTACAAGTG+AGG | - | chr1.1:43926846-43926865 | MS.gene46918:intron | 30.0% | |
| ! | TTGAATTGCTTTCTGAAGAA+AGG | + | chr1.1:43927781-43927800 | None:intergenic | 30.0% |
| !! | GGTGTTTTAGATTATGGATT+AGG | - | chr1.1:43926752-43926771 | MS.gene46918:intron | 30.0% |
| !!! | ACTGATTTTGAAATTTGAGC+CGG | + | chr1.1:43927279-43927298 | None:intergenic | 30.0% |
| ACAGTTATGGTACAGTTTCA+AGG | - | chr1.1:43927915-43927934 | MS.gene46918:CDS | 35.0% | |
| AGATAGTTCAGTTCAGACTT+TGG | + | chr1.1:43927333-43927352 | None:intergenic | 35.0% | |
| AGTATAGAGAGACTGTTCAA+CGG | - | chr1.1:43926505-43926524 | MS.gene46918:intron | 35.0% | |
| ATCCAAGGAATCTAACTACA+TGG | + | chr1.1:43927216-43927235 | None:intergenic | 35.0% | |
| ATGTTGCTGATATCACTTAG+TGG | - | chr1.1:43927066-43927085 | MS.gene46918:intron | 35.0% | |
| ATTGATCATTGTCTTGATCG+TGG | - | chr1.1:43928073-43928092 | MS.gene46918:CDS | 35.0% | |
| CAGAAAGCAATTCAAGAACA+AGG | - | chr1.1:43927786-43927805 | MS.gene46918:CDS | 35.0% | |
| CCATCAATGAAATTCAAGAG+AGG | - | chr1.1:43927829-43927848 | MS.gene46918:CDS | 35.0% | |
| CCTCTCTTGAATTTCATTGA+TGG | + | chr1.1:43927832-43927851 | None:intergenic | 35.0% | |
| CTTGATCTATTGATCTCTAC+TGG | - | chr1.1:43926570-43926589 | MS.gene46918:intron | 35.0% | |
| GAAGAAGTTGAAGGATTCTA+TGG | - | chr1.1:43926446-43926465 | MS.gene46918:intron | 35.0% | |
| GACTAACGAACAAACCAAAA+CGG | - | chr1.1:43926227-43926246 | MS.gene46918:CDS | 35.0% | |
| GATAGTTCAGTTCAGACTTT+GGG | + | chr1.1:43927332-43927351 | None:intergenic | 35.0% | |
| GTTAGTATTAATGTTGCGTC+TGG | - | chr1.1:43927117-43927136 | MS.gene46918:intron | 35.0% | |
| TGTCAACATGTCAGTATCTA+CGG | - | chr1.1:43927031-43927050 | MS.gene46918:intron | 35.0% | |
| TGTTGCTGATATCACTTAGT+GGG | - | chr1.1:43927067-43927086 | MS.gene46918:intron | 35.0% | |
| TTACTAGTAACCTCACACTA+AGG | + | chr1.1:43926891-43926910 | None:intergenic | 35.0% | |
| TTAGATTCCTTGGATTCACT+CGG | - | chr1.1:43927221-43927240 | MS.gene46918:intron | 35.0% | |
| TTCCATGTAGTTAGATTCCT+TGG | - | chr1.1:43927211-43927230 | MS.gene46918:intron | 35.0% | |
| ! | AAACAAATTCTCTAGAAGCC+AGG | + | chr1.1:43927398-43927417 | None:intergenic | 35.0% |
| ! | ACATGATTTTCCTTAGTGTG+AGG | - | chr1.1:43926878-43926897 | MS.gene46918:intron | 35.0% |
| ! | AGATCAAGAGTCTTATCATC+AGG | + | chr1.1:43926558-43926577 | None:intergenic | 35.0% |
| !! | AGATAACTTGTTTGTTGGGT+TGG | - | chr1.1:43927651-43927670 | MS.gene46918:CDS | 35.0% |
| AAAACGGTTCACGATGCTAA+AGG | - | chr1.1:43926243-43926262 | MS.gene46918:CDS | 40.0% | |
| AAGATTCTCCACCATCAATG+AGG | + | chr1.1:43927530-43927549 | None:intergenic | 40.0% | |
| AAGCAATTCAAGAACAAGGC+AGG | - | chr1.1:43927790-43927809 | MS.gene46918:CDS | 40.0% | |
| ACACTGTCTAATCTAAACGC+CGG | - | chr1.1:43927257-43927276 | MS.gene46918:intron | 40.0% | |
| ACAGTTTCAAGGTGAGCAAT+TGG | - | chr1.1:43927926-43927945 | MS.gene46918:CDS | 40.0% | |
| ACCAGAGAAACACAAGGAAA+TGG | - | chr1.1:43928027-43928046 | MS.gene46918:CDS | 40.0% | |
| AGCAATTCAAGAACAAGGCA+GGG | - | chr1.1:43927791-43927810 | MS.gene46918:CDS | 40.0% | |
| ATCTACATGTATCATGCCAC+CGG | + | chr1.1:43927578-43927597 | None:intergenic | 40.0% | |
| ATGAGGATTTCCTGCATTCA+CGG | + | chr1.1:43927513-43927532 | None:intergenic | 40.0% | |
| ATGCAGGAAATCCTCATTGA+TGG | - | chr1.1:43927516-43927535 | MS.gene46918:intron | 40.0% | |
| CCACTATCATTATGTTGCCA+TGG | + | chr1.1:43928116-43928135 | None:intergenic | 40.0% | |
| CCATGGCAACATAATGATAG+TGG | - | chr1.1:43928113-43928132 | MS.gene46918:CDS | 40.0% | |
| CCTTGCAGTTTGTAACTGTT+CGG | + | chr1.1:43928003-43928022 | None:intergenic | 40.0% | |
| GCATCAACACTTCTAATCCA+AGG | - | chr1.1:43926924-43926943 | MS.gene46918:intron | 40.0% | |
| TATGGACGAAGAAGTTTCTG+TGG | - | chr1.1:43926287-43926306 | MS.gene46918:CDS | 40.0% | |
| TCCATTTCCTTGTGTTTCTC+TGG | + | chr1.1:43928031-43928050 | None:intergenic | 40.0% | |
| TCGTAATAACTTCCCGCAAA+CGG | + | chr1.1:43926482-43926501 | None:intergenic | 40.0% | |
| TGTGAGTTTCACTTTGATGC+AGG | - | chr1.1:43927744-43927763 | MS.gene46918:CDS | 40.0% | |
| TTATTGACCGAGTGAATCCA+AGG | + | chr1.1:43927231-43927250 | None:intergenic | 40.0% | |
| TTTGCGGGAAGTTATTACGA+CGG | - | chr1.1:43926482-43926501 | MS.gene46918:intron | 40.0% | |
| ! | CTGGTGGAGAATTGGTTTAT+TGG | - | chr1.1:43926827-43926846 | MS.gene46918:intron | 40.0% |
| ! | TAGTCTTTGAAAGTCGTTGG+TGG | + | chr1.1:43926212-43926231 | None:intergenic | 40.0% |
| ! | TGGGTTGAAGAAGAAGTTGA+AGG | - | chr1.1:43926437-43926456 | MS.gene46918:intron | 40.0% |
| ! | TTTAGCATCGTGAACCGTTT+TGG | + | chr1.1:43926244-43926263 | None:intergenic | 40.0% |
| !! | CAACATAATGATAGTGGAGG+CGG | - | chr1.1:43928119-43928138 | MS.gene46918:CDS | 40.0% |
| !! | CGGCGTTATTTTACTGTTAC+TGG | - | chr1.1:43926525-43926544 | MS.gene46918:intron | 40.0% |
| !! | CGTTAGTCTTTGAAAGTCGT+TGG | + | chr1.1:43926215-43926234 | None:intergenic | 40.0% |
| !! | TGGAGAGTTTTAACCGTTTG+CGG | - | chr1.1:43926466-43926485 | MS.gene46918:intron | 40.0% |
| !! | TGGCAACATAATGATAGTGG+AGG | - | chr1.1:43928116-43928135 | MS.gene46918:CDS | 40.0% |
| AAAGATCTAATGCGGCGAAC+CGG | - | chr1.1:43926355-43926374 | MS.gene46918:CDS | 45.0% | |
| AAATTCTTCGACGACGTCGA+AGG | - | chr1.1:43926153-43926172 | MS.gene46918:CDS | 45.0% | |
| AACCGGAATTTGGAAGGATG+TGG | - | chr1.1:43926372-43926391 | MS.gene46918:CDS | 45.0% | |
| AATTTGGAAGGATGTGGACC+GGG | - | chr1.1:43926378-43926397 | MS.gene46918:CDS | 45.0% | |
| ACACCGACACAGACACATAT+CGG | + | chr1.1:43926962-43926981 | None:intergenic | 45.0% | |
| ACTACATGGAAGCCAAATCC+AGG | + | chr1.1:43927202-43927221 | None:intergenic | 45.0% | |
| AGACTTGGAGAAGAGTCTAC+TGG | - | chr1.1:43927866-43927885 | MS.gene46918:CDS | 45.0% | |
| AGAGATGTGCTACCTGGATT+TGG | - | chr1.1:43927187-43927206 | MS.gene46918:intron | 45.0% | |
| ATCCCCTGCATTCACACAAT+CGG | + | chr1.1:43927375-43927394 | None:intergenic | 45.0% | |
| CACGTCATAGAGATGACAGA+CGG | - | chr1.1:43926075-43926094 | MS.gene46918:CDS | 45.0% | |
| CAGGAAATCCTCATTGATGG+TGG | - | chr1.1:43927519-43927538 | MS.gene46918:intron | 45.0% | |
| CCGAACAGTTACAAACTGCA+AGG | - | chr1.1:43928000-43928019 | MS.gene46918:CDS | 45.0% | |
| GAATTTGGAAGGATGTGGAC+CGG | - | chr1.1:43926377-43926396 | MS.gene46918:CDS | 45.0% | |
| GCAATTCAAGAACAAGGCAG+GGG | - | chr1.1:43927792-43927811 | MS.gene46918:CDS | 45.0% | |
| GTACCATAACTGTCATGTCG+AGG | + | chr1.1:43927908-43927927 | None:intergenic | 45.0% | |
| GTCCACATCCTTCCAAATTC+CGG | + | chr1.1:43926377-43926396 | None:intergenic | 45.0% | |
| GTTCCTCGACATGACAGTTA+TGG | - | chr1.1:43927902-43927921 | MS.gene46918:CDS | 45.0% | |
| TCACGATGCTAAAGGAGTGA+AGG | - | chr1.1:43926251-43926270 | MS.gene46918:CDS | 45.0% | |
| ! | AGTTTCTGTGGCGTTGAAGA+AGG | - | chr1.1:43926299-43926318 | MS.gene46918:CDS | 45.0% |
| ! | ATATGTGTCTGTGTCGGTGT+CGG | - | chr1.1:43926962-43926981 | MS.gene46918:intron | 45.0% |
| ! | CTACCGATTGTGTGAATGCA+GGG | - | chr1.1:43927369-43927388 | MS.gene46918:intron | 45.0% |
| ! | GGCGTTGGAAAGATCTAATG+CGG | - | chr1.1:43926347-43926366 | MS.gene46918:CDS | 45.0% |
| ! | TACCGATTGTGTGAATGCAG+GGG | - | chr1.1:43927370-43927389 | MS.gene46918:intron | 45.0% |
| ! | TCTACCGATTGTGTGAATGC+AGG | - | chr1.1:43927368-43927387 | MS.gene46918:intron | 45.0% |
| !! | ATAATGATAGTGGAGGCGGT+GGG | - | chr1.1:43928123-43928142 | MS.gene46918:CDS | 45.0% |
| !! | GGAGAGTTTTAACCGTTTGC+GGG | - | chr1.1:43926467-43926486 | MS.gene46918:intron | 45.0% |
| ACAAGGCAGGGGAAGAATTC+TGG | - | chr1.1:43927803-43927822 | MS.gene46918:CDS | 50.0% | |
| ATAGAGATGACAGACGGTGC+CGG | - | chr1.1:43926081-43926100 | MS.gene46918:CDS | 50.0% | |
| ATCGGACGACAAACATGCCT+TGG | + | chr1.1:43926944-43926963 | None:intergenic | 50.0% | |
| ATGTTGCCATGGTTTCACCG+TGG | + | chr1.1:43928105-43928124 | None:intergenic | 50.0% | |
| CACATGTATCATGCCGTGAG+AGG | + | chr1.1:43927450-43927469 | None:intergenic | 50.0% | |
| CCGGTGAAACTTCTTCGCTA+CGG | + | chr1.1:43926047-43926066 | None:intergenic | 50.0% | |
| CCGTAGCGAAGAAGTTTCAC+CGG | - | chr1.1:43926044-43926063 | MS.gene46918:CDS | 50.0% | |
| CGTCCGATATGTGTCTGTGT+CGG | - | chr1.1:43926956-43926975 | MS.gene46918:intron | 50.0% | |
| CGTCGTCGAAGAATTTGTCG+AGG | + | chr1.1:43926149-43926168 | None:intergenic | 50.0% | |
| CGTCTGTCATCTCTATGACG+TGG | + | chr1.1:43926077-43926096 | None:intergenic | 50.0% | |
| CTGTCATGTCGAGGAACACT+TGG | + | chr1.1:43927899-43927918 | None:intergenic | 50.0% | |
| CTTGATCGTGGTTCTTGCCA+CGG | - | chr1.1:43928085-43928104 | MS.gene46918:CDS | 50.0% | |
| GAAGATGGTGAAGCTGAAGC+TGG | - | chr1.1:43926323-43926342 | MS.gene46918:CDS | 50.0% | |
| GAAGGAGCTTCGTTCACGTA+TGG | - | chr1.1:43926269-43926288 | MS.gene46918:CDS | 50.0% | |
| GCATGACGCTGTCAAAGACT+TGG | - | chr1.1:43927851-43927870 | MS.gene46918:CDS | 50.0% | |
| GGATGATATCGAGAGCCATG+TGG | - | chr1.1:43927947-43927966 | MS.gene46918:CDS | 50.0% | |
| TAATGCGGCGAACCGGAATT+TGG | - | chr1.1:43926362-43926381 | MS.gene46918:CDS | 50.0% | |
| TACATGTATCATGCCACCGG+AGG | + | chr1.1:43927575-43927594 | None:intergenic | 50.0% | |
| TCATCTCTATGACGTGGTGC+CGG | + | chr1.1:43926071-43926090 | None:intergenic | 50.0% | |
| TCCTACCCTTGATAAGCCTC+CGG | - | chr1.1:43927556-43927575 | MS.gene46918:intron | 50.0% | |
| TCTCGAAGAGATGTGCTACC+TGG | - | chr1.1:43927181-43927200 | MS.gene46918:intron | 50.0% | |
| TTCTTGCCACGGTGAAACCA+TGG | - | chr1.1:43928096-43928115 | MS.gene46918:CDS | 50.0% | |
| !! | CATAATGATAGTGGAGGCGG+TGG | - | chr1.1:43928122-43928141 | MS.gene46918:CDS | 50.0% |
| !! | GGAAGCACCAGAGAAACACA+AGG | - | chr1.1:43928021-43928040 | MS.gene46918:CDS | 50.0% |
| !! | TAATGATAGTGGAGGCGGTG+GGG | - | chr1.1:43928124-43928143 | MS.gene46918:CDS | 50.0% |
| ACCGGAGGCTTATCAAGGGT+AGG | + | chr1.1:43927560-43927579 | None:intergenic | 55.0% | |
| ACTACTGACGCCGTGAATGC+AGG | - | chr1.1:43927500-43927519 | MS.gene46918:intron | 55.0% | |
| AGGCTGTTCGAGGCTAATGG+AGG | + | chr1.1:43927430-43927449 | None:intergenic | 55.0% | |
| ATATCGAGAGCCATGTGGCG+AGG | - | chr1.1:43927952-43927971 | MS.gene46918:CDS | 55.0% | |
| ATGCCACCGGAGGCTTATCA+AGG | + | chr1.1:43927565-43927584 | None:intergenic | 55.0% | |
| GAGAGGCTGTTCGAGGCTAA+TGG | + | chr1.1:43927433-43927452 | None:intergenic | 55.0% | |
| GATGGTGAAGCTGAAGCTGG+AGG | - | chr1.1:43926326-43926345 | MS.gene46918:CDS | 55.0% | |
| GCGAAGAAGTTTCACCGGAC+CGG | - | chr1.1:43926049-43926068 | MS.gene46918:CDS | 55.0% | |
| GGCTGTTCGAGGCTAATGGA+GGG | + | chr1.1:43927429-43927448 | None:intergenic | 55.0% | |
| GTTCGAGGCTAATGGAGGGT+AGG | + | chr1.1:43927425-43927444 | None:intergenic | 55.0% | |
| TAAGTACCACCCGAAGGAGG+AGG | + | chr1.1:43928188-43928207 | None:intergenic | 55.0% | |
| TACCCTTGATAAGCCTCCGG+TGG | - | chr1.1:43927559-43927578 | MS.gene46918:intron | 55.0% | |
| TAGCCTCGAACAGCCTCTCA+CGG | - | chr1.1:43927434-43927453 | MS.gene46918:intron | 55.0% | |
| TATCGAGAGCCATGTGGCGA+GGG | - | chr1.1:43927953-43927972 | MS.gene46918:CDS | 55.0% | |
| TGCCACCGGAGGCTTATCAA+GGG | + | chr1.1:43927564-43927583 | None:intergenic | 55.0% | |
| TGTGTGAATGCAGGGGATCC+TGG | - | chr1.1:43927377-43927396 | MS.gene46918:intron | 55.0% | |
| ! | ACGAGGAGTTCGGTGGTGAA+TGG | - | chr1.1:43926417-43926436 | MS.gene46918:CDS | 55.0% |
| ! | CGAGGAGTTCGGTGGTGAAT+GGG | - | chr1.1:43926418-43926437 | MS.gene46918:CDS | 55.0% |
| ! | GGCGTTGAAGAAGGCGAAGA+TGG | - | chr1.1:43926308-43926327 | MS.gene46918:CDS | 55.0% |
| !! | AATGATAGTGGAGGCGGTGG+GGG | - | chr1.1:43928125-43928144 | MS.gene46918:CDS | 55.0% |
| !! | TCTGTGTCGGTGTCGGATAC+CGG | - | chr1.1:43926969-43926988 | MS.gene46918:intron | 55.0% |
| ATGCCGTGAGAGGCTGTTCG+AGG | + | chr1.1:43927440-43927459 | None:intergenic | 60.0% | |
| ATGTGGACCGGGTTCGTCGT+CGG | - | chr1.1:43926389-43926408 | MS.gene46918:CDS | 60.0% | |
| GCGAGCTCGTTTGTGCACAC+TGG | - | chr1.1:43927975-43927994 | MS.gene46918:CDS | 60.0% | |
| GCGGCGAACCGGAATTTGGA+AGG | - | chr1.1:43926366-43926385 | MS.gene46918:CDS | 60.0% | |
| TCACCACCGAACTCCTCGTC+CGG | + | chr1.1:43926416-43926435 | None:intergenic | 60.0% | |
| ! | GAAGCTGAAGCTGGAGGCGT+TGG | - | chr1.1:43926332-43926351 | MS.gene46918:CDS | 60.0% |
| !! | TCTATGACGTGGTGCCGGTC+CGG | + | chr1.1:43926066-43926085 | None:intergenic | 60.0% |
| AGAACCGGAGCAGGAGCAGG+AGG | - | chr1.1:43926114-43926133 | MS.gene46918:CDS | 65.0% | |
| CCCGAAGGAGGAGGAGGTGA+CGG | + | chr1.1:43928179-43928198 | None:intergenic | 65.0% | |
| CCCGTCACCTCCTCCTCCTT+CGG | - | chr1.1:43928175-43928194 | MS.gene46918:CDS | 65.0% | |
| CCGAAGGAGGAGGAGGTGAC+GGG | + | chr1.1:43928178-43928197 | None:intergenic | 65.0% | |
| CCGTCACCTCCTCCTCCTTC+GGG | - | chr1.1:43928176-43928195 | MS.gene46918:CDS | 65.0% | |
| CGAAGGAGGAGGAGGTGACG+GGG | + | chr1.1:43928177-43928196 | None:intergenic | 65.0% | |
| GTACCACCCGAAGGAGGAGG+AGG | + | chr1.1:43928185-43928204 | None:intergenic | 65.0% | |
| GTCGGACCGGACGAGGAGTT+CGG | - | chr1.1:43926407-43926426 | MS.gene46918:CDS | 65.0% | |
| TCACCTCCTCCTCCTTCGGG+TGG | - | chr1.1:43928179-43928198 | MS.gene46918:CDS | 65.0% | |
| TCCTGCTCCTGCTCCGGTTC+TGG | + | chr1.1:43926115-43926134 | None:intergenic | 65.0% | |
| TCTGCCTCCTGCTCCTGCTC+CGG | + | chr1.1:43926121-43926140 | None:intergenic | 65.0% | |
| ! | GAAGGAGGAGGAGGTGACGG+GGG | + | chr1.1:43928176-43928195 | None:intergenic | 65.0% |
| !! | ATGACAGACGGTGCCGGTGC+CGG | - | chr1.1:43926087-43926106 | MS.gene46918:CDS | 65.0% |
| !! | TCCTGCTCCGGTTCTGGCTC+CGG | + | chr1.1:43926109-43926128 | None:intergenic | 65.0% |
| ACGAGCTCGCCCTCGCCACA+TGG | + | chr1.1:43927965-43927984 | None:intergenic | 70.0% | |
| GACCGGGTTCGTCGTCGGAC+CGG | - | chr1.1:43926394-43926413 | MS.gene46918:CDS | 70.0% | |
| GCCAGAACCGGAGCAGGAGC+AGG | - | chr1.1:43926111-43926130 | MS.gene46918:CDS | 70.0% | |
| GGACCGGACGAGGAGTTCGG+TGG | - | chr1.1:43926410-43926429 | MS.gene46918:CDS | 70.0% | |
| GGGGGAGTCTGTGCTGGAGC+AGG | + | chr1.1:43928158-43928177 | None:intergenic | 70.0% | |
| GTCCGGTCCGACGACGAACC+CGG | + | chr1.1:43926399-43926418 | None:intergenic | 70.0% | |
| GTTCGTCGTCGGACCGGACG+AGG | - | chr1.1:43926400-43926419 | MS.gene46918:CDS | 70.0% | |
| !! | GGTGACGGGGGAGTCTGTGC+TGG | + | chr1.1:43928164-43928183 | None:intergenic | 70.0% |
| !! | TCCGGTTCTGGCTCCGGCAC+CGG | + | chr1.1:43926103-43926122 | None:intergenic | 70.0% |
| GCCGGAGCCAGAACCGGAGC+AGG | - | chr1.1:43926105-43926124 | MS.gene46918:CDS | 75.0% | |
| ! | GCCGGTGCCGGAGCCAGAAC+CGG | - | chr1.1:43926099-43926118 | MS.gene46918:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 43926009 | 43928208 | 43926009 | ID=MS.gene46918 |
| chr1.1 | mRNA | 43926009 | 43928208 | 43926009 | ID=MS.gene46918.t1;Parent=MS.gene46918 |
| chr1.1 | exon | 43927626 | 43928208 | 43927626 | ID=MS.gene46918.t1.exon1;Parent=MS.gene46918.t1 |
| chr1.1 | CDS | 43927626 | 43928208 | 43927626 | ID=cds.MS.gene46918.t1;Parent=MS.gene46918.t1 |
| chr1.1 | exon | 43926009 | 43926451 | 43926009 | ID=MS.gene46918.t1.exon2;Parent=MS.gene46918.t1 |
| chr1.1 | CDS | 43926009 | 43926451 | 43926009 | ID=cds.MS.gene46918.t1;Parent=MS.gene46918.t1 |
| Gene Sequence |
| Protein sequence |
