AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene47841


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene47841.t1 MTR_4g015460 89.950 398 39 1 1 397 109 506 0.0 746
MS.gene47841.t1 MTR_4g015420 81.472 394 69 3 1 391 132 524 0.0 659
MS.gene47841.t1 MTR_4g066330 68.193 393 114 6 1 391 109 492 0.0 540
MS.gene47841.t1 MTR_4g066280 65.903 393 123 7 1 391 109 492 0.0 526
MS.gene47841.t1 MTR_2g043200 64.286 392 134 3 1 391 132 518 8.65e-180 510
MS.gene47841.t1 MTR_2g098520 59.189 419 134 7 1 392 102 510 8.83e-173 492
MS.gene47841.t1 MTR_2g098540 57.995 419 139 6 1 392 55 463 1.47e-168 480
MS.gene47841.t1 MTR_2g098540 57.995 419 139 6 1 392 99 507 1.92e-168 481
MS.gene47841.t1 MTR_2g098790 57.416 418 141 6 1 391 106 513 2.99e-167 478
MS.gene47841.t1 MTR_4g066340 56.905 420 144 6 1 393 31 440 1.40e-166 474
MS.gene47841.t1 MTR_3g028720 57.895 418 139 7 1 391 106 513 5.71e-162 466
MS.gene47841.t1 MTR_4g066210 54.306 418 154 5 1 391 111 518 4.15e-161 463
MS.gene47841.t1 MTR_4g066580 56.938 418 143 7 1 391 107 514 4.13e-160 461
MS.gene47841.t1 MTR_4g066240 53.095 420 160 5 1 393 104 513 1.15e-158 456
MS.gene47841.t1 MTR_6g078450 54.028 422 157 4 1 395 104 515 2.88e-158 456
MS.gene47841.t1 MTR_6g078330 54.028 422 157 5 1 395 1 412 5.19e-158 451
MS.gene47841.t1 MTR_4g066240 52.969 421 160 6 1 393 104 514 7.09e-157 452
MS.gene47841.t1 MTR_6g078330 54.028 422 157 5 1 395 105 516 1.04e-156 452
MS.gene47841.t1 MTR_4g066640 55.263 418 152 8 1 393 107 514 1.23e-155 449
MS.gene47841.t1 MTR_4g066590 55.396 417 149 6 1 390 101 507 1.32e-154 446
MS.gene47841.t1 MTR_4g066630 54.916 417 151 6 1 390 107 513 9.33e-153 442
MS.gene47841.t1 MTR_6g078380 54.739 422 155 4 1 395 104 516 9.07e-150 434
MS.gene47841.t1 MTR_5g071520 53.132 431 150 6 1 392 107 524 7.09e-146 424
MS.gene47841.t1 MTR_6g078330 51.707 410 159 6 13 395 15 412 1.65e-144 417
MS.gene47841.t1 MTR_4g023000 49.640 417 169 7 1 391 92 493 1.49e-137 402
MS.gene47841.t1 MTR_3g026280 49.881 419 168 6 1 392 90 493 3.54e-136 399
MS.gene47841.t1 MTR_3g028720 56.868 364 120 7 1 337 106 459 2.65e-132 387
MS.gene47841.t1 MTR_3g026400 47.837 416 178 6 1 390 74 476 3.88e-132 388
MS.gene47841.t1 MTR_3g026400 47.837 416 178 6 1 390 105 507 7.08e-132 388
MS.gene47841.t1 MTR_6g078450 53.022 364 134 4 1 337 104 457 1.04e-127 375
MS.gene47841.t1 MTR_3g026620 47.596 416 179 6 1 390 106 508 3.10e-123 366
MS.gene47841.t1 MTR_4g066630 52.893 363 134 6 1 336 107 459 1.83e-122 362
MS.gene47841.t1 MTR_4g083000 43.571 420 196 5 1 391 1 408 1.47e-119 353
MS.gene47841.t1 MTR_4g083000 43.571 420 196 5 1 391 95 502 1.66e-118 354
MS.gene47841.t1 MTR_5g044000 44.575 424 185 8 1 390 113 520 9.16e-117 350
MS.gene47841.t1 MTR_3g028720 55.455 330 110 7 1 303 106 425 8.54e-113 337
MS.gene47841.t1 MTR_4g066580 54.545 330 113 7 1 303 107 426 5.07e-111 332
MS.gene47841.t1 MTR_4g081530 42.654 422 198 7 1 391 91 499 5.65e-111 335
MS.gene47841.t1 MTR_4g066240 48.193 332 135 5 1 305 104 425 2.02e-106 320
MS.gene47841.t1 MTR_4g066630 51.829 328 121 6 1 301 107 424 3.08e-104 315
MS.gene47841.t1 MTR_2g022760 40.952 420 212 7 1 394 1 410 1.74e-103 312
MS.gene47841.t1 MTR_3g033810 41.176 408 211 7 1 391 88 483 1.99e-103 315
MS.gene47841.t1 MTR_3g033790 41.667 408 208 7 1 391 86 480 3.26e-103 314
MS.gene47841.t1 MTR_0110s0040 42.654 422 197 9 1 394 110 514 8.11e-103 314
MS.gene47841.t1 MTR_2g022760 40.952 420 212 7 1 394 104 513 3.28e-102 312
MS.gene47841.t1 MTR_7g033860 39.467 413 216 7 1 393 116 514 1.26e-101 311
MS.gene47841.t1 MTR_4g131810 39.234 418 216 8 1 390 96 503 2.66e-100 308
MS.gene47841.t1 MTR_0110s0030 40.952 420 207 8 1 394 110 514 4.69e-100 307
MS.gene47841.t1 MTR_2g079580 41.007 417 207 9 1 390 99 503 1.01e-98 304
MS.gene47841.t1 MTR_2g079550 41.007 417 207 8 1 390 97 501 4.11e-98 302
MS.gene47841.t1 MTR_2g022710 38.208 424 225 8 1 397 1 414 9.49e-98 298
MS.gene47841.t1 MTR_2g022710 38.208 424 225 8 1 397 102 515 2.27e-96 297
MS.gene47841.t1 MTR_4g067040 50.633 316 119 6 1 289 102 407 3.94e-96 293
MS.gene47841.t1 MTR_3g028720 55.894 263 86 4 1 237 106 364 2.80e-94 288
MS.gene47841.t1 MTR_4g131800 40.000 420 216 7 1 394 583 992 8.20e-94 303
MS.gene47841.t1 MTR_7g051610 40.338 414 211 6 1 393 136 534 1.73e-92 288
MS.gene47841.t1 MTR_0108s0030 37.981 416 200 8 1 393 71 451 3.73e-92 285
MS.gene47841.t1 MTR_7g051650 39.806 412 211 9 1 390 132 528 4.19e-92 287
MS.gene47841.t1 MTR_7g051650 39.806 412 211 9 1 390 136 532 5.47e-92 286
MS.gene47841.t1 MTR_7g051510 40.338 414 211 6 1 393 136 534 3.67e-91 285
MS.gene47841.t1 MTR_4g067040 55.686 255 87 3 1 229 102 356 7.08e-91 279
MS.gene47841.t1 MTR_4g016920 38.425 419 210 7 1 392 1 398 1.07e-90 280
MS.gene47841.t1 MTR_7g068900 39.192 421 203 8 1 391 22 419 1.68e-90 281
MS.gene47841.t1 MTR_7g068910 38.425 419 210 7 1 392 98 495 5.74e-90 281
MS.gene47841.t1 MTR_7g068910 38.425 419 210 7 1 392 108 505 6.52e-90 281
MS.gene47841.t1 MTR_4g066640 56.275 247 84 4 1 223 107 353 8.57e-90 276
MS.gene47841.t1 MTR_4g016920 38.425 419 210 7 1 392 94 491 1.97e-89 280
MS.gene47841.t1 MTR_4g066630 54.118 255 91 3 1 229 107 361 2.43e-89 275
MS.gene47841.t1 MTR_5g068740 36.792 424 215 8 1 394 92 492 3.24e-88 276
MS.gene47841.t1 MTR_6g078330 51.779 253 96 2 1 227 105 357 1.05e-87 271
MS.gene47841.t1 MTR_1g088610 37.857 420 209 8 1 391 92 488 2.65e-87 277
MS.gene47841.t1 MTR_1g088610 39.167 120 66 2 276 394 503 616 2.48e-18 87.4
MS.gene47841.t1 MTR_7g056747 37.981 416 209 7 1 395 15 402 1.60e-86 268
MS.gene47841.t1 MTR_3g026400 51.004 249 95 3 1 224 105 351 1.40e-84 263
MS.gene47841.t1 MTR_1g088630 35.697 423 196 10 1 394 60 435 7.83e-78 248
MS.gene47841.t1 MTR_2g079580 39.939 328 159 8 1 301 99 415 1.82e-71 230
MS.gene47841.t1 MTR_2g022710 35.813 363 198 6 1 337 102 455 4.55e-71 231
MS.gene47841.t1 MTR_2g022710 35.813 363 198 6 1 337 102 455 9.58e-71 230
MS.gene47841.t1 MTR_4g016920 44.358 257 115 3 1 231 1 255 1.19e-67 217
MS.gene47841.t1 MTR_2g022710 37.003 327 171 6 1 301 102 419 6.78e-67 218
MS.gene47841.t1 MTR_0110s0040 40.753 292 143 5 1 264 110 399 1.80e-64 211
MS.gene47841.t1 MTR_2g022710 35.873 315 167 6 1 289 102 407 3.18e-61 203
MS.gene47841.t1 MTR_2g022710 38.095 252 130 3 1 227 102 352 1.05e-54 186
MS.gene47841.t1 MTR_1g088630 39.271 247 97 5 1 220 92 312 3.06e-51 176
MS.gene47841.t1 MTR_1g088630 40.500 200 90 3 1 173 92 289 1.50e-42 151
MS.gene47841.t1 MTR_0110s0020 40.000 160 70 2 1 136 110 267 3.67e-32 124
MS.gene47841.t1 MTR_4g122980 25.592 422 214 11 2 395 188 537 2.46e-28 117
MS.gene47841.t1 MTR_5g069350 41.259 143 44 5 259 391 76 188 2.31e-20 88.6
MS.gene47841.t1 MTR_8g038650 40.000 100 60 0 138 237 62 161 1.76e-17 79.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene47841.t1 AT2G44480 44.153 419 198 4 1 393 1 409 4.53e-126 370
MS.gene47841.t1 AT2G44480 44.153 419 198 4 1 393 103 511 7.25e-125 370
MS.gene47841.t1 AT2G44480 44.153 419 198 4 1 393 134 542 1.98e-124 370
MS.gene47841.t1 AT5G44640 46.506 415 179 7 8 394 106 505 1.89e-123 367
MS.gene47841.t1 AT2G44450 46.265 415 181 6 7 394 105 504 7.58e-123 365
MS.gene47841.t1 AT3G60130 45.024 422 183 8 1 391 46 449 2.54e-121 360
MS.gene47841.t1 AT5G42260 46.135 414 180 7 1 386 99 497 5.78e-121 360
MS.gene47841.t1 AT3G60130 45.024 422 183 8 1 391 98 501 3.23e-120 358
MS.gene47841.t1 AT5G24550 45.843 421 193 8 1 393 99 512 4.70e-120 359
MS.gene47841.t1 AT3G60120 43.675 419 201 5 1 392 81 491 1.13e-117 353
MS.gene47841.t1 AT5G54570 43.705 421 193 7 1 390 1 408 2.29e-117 348
MS.gene47841.t1 AT3G60140 44.893 421 192 8 1 391 93 503 3.14e-116 350
MS.gene47841.t1 AT5G54570 43.705 421 193 7 1 390 98 505 4.20e-116 348
MS.gene47841.t1 AT2G44490 41.608 423 210 6 1 394 82 496 6.18e-116 349
MS.gene47841.t1 AT3G60130 43.780 418 183 7 1 391 46 438 9.67e-116 345
MS.gene47841.t1 AT1G26560 44.762 420 190 8 1 390 99 506 2.56e-115 346
MS.gene47841.t1 AT5G24540 43.943 421 201 7 1 393 99 512 6.86e-113 340
MS.gene47841.t1 AT1G47600 43.099 413 199 6 1 390 110 509 2.16e-112 338
MS.gene47841.t1 AT1G47600 43.099 413 198 7 1 390 110 508 4.78e-111 335
MS.gene47841.t1 AT1G75940 42.755 421 203 6 1 390 104 517 6.39e-111 335
MS.gene47841.t1 AT1G51470 43.341 413 198 6 1 390 110 509 1.25e-110 334
MS.gene47841.t1 AT3G03640 42.518 421 203 6 1 391 102 513 1.11e-109 332
MS.gene47841.t1 AT2G25630 43.405 417 178 8 1 390 98 483 2.68e-109 330
MS.gene47841.t1 AT2G44460 44.630 419 195 6 1 391 96 505 8.72e-109 331
MS.gene47841.t1 AT5G36890 44.030 402 196 7 8 391 90 480 1.52e-108 328
MS.gene47841.t1 AT5G36890 44.030 402 196 7 8 391 90 480 1.85e-108 328
MS.gene47841.t1 AT5G25980 42.823 418 202 8 1 391 116 523 3.36e-107 326
MS.gene47841.t1 AT3G18080 43.365 422 193 9 1 393 106 510 1.12e-106 324
MS.gene47841.t1 AT5G26000 41.866 418 205 7 1 390 104 511 1.18e-105 322
MS.gene47841.t1 AT3G09260 41.330 421 208 6 1 392 102 512 3.74e-104 318
MS.gene47841.t1 AT2G44470 41.289 419 208 9 1 390 96 505 4.17e-104 320
MS.gene47841.t1 AT1G66280 42.823 418 201 7 1 390 103 510 1.73e-103 316
MS.gene47841.t1 AT1G66270 41.866 418 205 6 1 390 103 510 1.37e-102 313
MS.gene47841.t1 AT3G18070 42.080 423 197 10 1 394 97 500 5.51e-102 311
MS.gene47841.t1 AT5G28510 40.566 424 208 6 1 390 106 519 2.97e-101 310
MS.gene47841.t1 AT3G21370 41.232 422 208 8 1 391 100 512 4.64e-101 310
MS.gene47841.t1 AT3G18070 41.844 423 192 10 1 394 97 494 5.54e-101 308
MS.gene47841.t1 AT2G44450 44.022 368 164 6 54 394 1 353 5.74e-101 304
MS.gene47841.t1 AT1G61820 40.476 420 213 8 1 393 98 507 1.46e-100 308
MS.gene47841.t1 AT1G66270 41.627 418 204 7 1 390 103 508 2.74e-100 308
MS.gene47841.t1 AT1G52400 40.618 421 210 8 1 391 106 516 3.35e-100 308
MS.gene47841.t1 AT1G52400 40.618 421 210 8 1 391 106 516 3.35e-100 308
MS.gene47841.t1 AT2G32860 38.876 427 219 7 1 396 162 577 2.45e-98 305
MS.gene47841.t1 AT2G32860 38.642 427 219 8 1 396 162 576 1.01e-97 304
MS.gene47841.t1 AT4G21760 39.573 422 214 9 1 396 121 527 8.68e-97 299
MS.gene47841.t1 AT4G27830 38.849 417 207 8 1 390 1 396 9.31e-95 290
MS.gene47841.t1 AT1G02850 38.095 420 207 10 1 391 91 486 1.71e-93 289
MS.gene47841.t1 AT1G61810 39.762 420 216 8 1 393 1 410 2.13e-93 286
MS.gene47841.t1 AT4G27830 38.849 417 207 8 1 390 89 484 2.87e-93 289
MS.gene47841.t1 AT4G21760 38.717 421 209 9 1 396 121 517 1.91e-92 288
MS.gene47841.t1 AT1G61810 39.762 420 216 8 1 393 101 510 2.73e-92 287
MS.gene47841.t1 AT3G62750 38.480 408 213 8 1 390 1 388 8.63e-91 280
MS.gene47841.t1 AT3G62750 38.480 408 213 8 1 390 1 388 8.63e-91 280
MS.gene47841.t1 AT5G54570 40.599 367 175 6 1 337 98 451 3.31e-90 280
MS.gene47841.t1 AT1G02850 36.117 443 207 10 1 391 91 509 5.98e-90 281
MS.gene47841.t1 AT3G62750 38.235 408 214 8 1 390 86 473 1.46e-89 279
MS.gene47841.t1 AT3G62750 38.235 408 214 8 1 390 112 499 2.42e-89 280
MS.gene47841.t1 AT4G27820 37.410 417 214 8 1 390 1 397 2.70e-88 273
MS.gene47841.t1 AT4G27820 37.410 417 214 8 1 390 1 397 2.70e-88 273
MS.gene47841.t1 AT1G02850 36.036 444 207 11 1 391 91 510 3.11e-88 276
MS.gene47841.t1 AT5G25980 41.436 362 177 6 1 337 116 467 8.64e-88 274
MS.gene47841.t1 AT5G25980 41.436 362 177 6 1 337 116 467 8.64e-88 274
MS.gene47841.t1 AT4G27820 37.410 417 214 8 1 390 86 482 3.94e-87 273
MS.gene47841.t1 AT1G02850 36.993 419 186 10 1 391 91 459 1.92e-86 270
MS.gene47841.t1 AT1G61810 40.050 397 202 7 1 370 101 488 2.13e-86 272
MS.gene47841.t1 AT1G61820 39.572 374 190 7 47 393 4 368 8.57e-86 266
MS.gene47841.t1 AT2G44460 42.935 368 173 6 52 391 1 359 8.88e-86 268
MS.gene47841.t1 AT5G24540 41.047 363 180 6 1 336 99 454 1.67e-85 268
MS.gene47841.t1 AT5G26000 39.945 363 182 5 1 337 104 456 4.77e-85 266
MS.gene47841.t1 AT4G22100 37.709 419 217 7 1 393 85 485 1.38e-84 267
MS.gene47841.t1 AT3G62740 35.593 413 222 8 1 390 87 478 7.30e-84 265
MS.gene47841.t1 AT3G60140 43.939 330 146 7 1 301 93 412 6.03e-82 258
MS.gene47841.t1 AT2G44470 38.356 365 186 7 1 336 96 450 1.68e-80 254
MS.gene47841.t1 AT1G45191 36.277 419 213 10 1 391 92 484 8.64e-80 254
MS.gene47841.t1 AT5G48375 40.548 365 159 9 1 355 95 411 2.08e-78 249
MS.gene47841.t1 AT1G45191 35.646 418 228 8 1 391 92 495 1.13e-77 249
MS.gene47841.t1 AT1G60090 35.731 417 222 8 1 391 87 483 1.56e-77 248
MS.gene47841.t1 AT1G45191 35.646 418 228 8 1 391 104 507 1.66e-77 249
MS.gene47841.t1 AT1G45191 35.697 423 216 8 1 391 92 490 6.60e-77 247
MS.gene47841.t1 AT2G44480 42.160 287 154 3 109 393 29 305 1.22e-76 240
MS.gene47841.t1 AT1G60090 34.491 432 214 10 1 391 87 490 1.12e-74 241
MS.gene47841.t1 AT1G52400 38.630 365 185 7 1 336 106 460 1.24e-74 239
MS.gene47841.t1 AT3G18070 40.000 345 163 8 79 394 94 423 9.77e-74 236
MS.gene47841.t1 AT3G62750 37.079 356 187 7 1 339 112 447 5.15e-72 233
MS.gene47841.t1 AT3G18070 42.955 291 146 7 109 394 36 311 6.13e-70 223
MS.gene47841.t1 AT3G62740 36.047 344 181 7 1 320 87 415 3.81e-69 224
MS.gene47841.t1 AT2G44480 46.087 230 99 2 1 205 134 363 8.50e-69 223
MS.gene47841.t1 AT2G44470 43.083 253 117 4 1 226 96 348 2.11e-67 219
MS.gene47841.t1 AT1G02850 35.043 351 161 7 1 301 91 424 1.40e-65 215
MS.gene47841.t1 AT3G62750 42.510 247 123 4 1 230 86 330 3.01e-64 210
MS.gene47841.t1 AT3G62750 42.510 247 123 4 1 230 86 330 3.01e-64 210
MS.gene47841.t1 AT3G62750 42.510 247 123 4 1 230 112 356 2.70e-63 209
MS.gene47841.t1 AT1G61810 37.195 328 170 7 1 301 101 419 1.10e-60 202
MS.gene47841.t1 AT3G18070 41.434 251 118 4 1 226 97 343 3.86e-58 194
MS.gene47841.t1 AT1G60270 38.047 297 145 7 1 268 1 287 9.73e-57 188
MS.gene47841.t1 AT1G45191 39.841 251 124 3 1 226 92 340 4.46e-56 190
MS.gene47841.t1 AT1G45191 39.841 251 124 3 1 226 92 340 5.08e-56 190
MS.gene47841.t1 AT1G60270 38.047 297 145 7 1 268 88 374 1.52e-55 187
MS.gene47841.t1 AT1G51490 37.993 279 141 7 1 254 85 356 5.86e-53 182
MS.gene47841.t1 AT3G18070 36.220 254 121 6 79 303 94 335 2.92e-41 149
MS.gene47841.t1 AT5G16580 32.990 291 155 6 79 347 27 299 2.17e-39 142
MS.gene47841.t1 AT1G61810 38.308 201 98 3 1 176 101 300 8.23e-39 141
MS.gene47841.t1 AT3G18070 39.698 199 103 5 109 302 36 222 1.37e-37 136
MS.gene47841.t1 AT3G06510 25.231 432 237 12 2 395 165 548 2.34e-30 123
MS.gene47841.t1 AT3G06510 25.829 422 213 12 2 395 165 514 5.51e-30 122

Find 92 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGAACATAATAGAATTAT+TGG 0.142938 4.4:+85067251 MS.gene47841:CDS
GATATTTGCTTCCTGGAATT+TGG 0.177328 4.4:+85065714 MS.gene47841:CDS
GAGCAATCTAAGAGTCTTAT+TGG 0.216931 4.4:+85066162 MS.gene47841:CDS
ACCATTATCATAACAGAAAA+TGG 0.263997 4.4:+85066625 MS.gene47841:CDS
GGGGAAGATCCCAATGAAAA+AGG 0.264707 4.4:-85065138 None:intergenic
GCTTTGTCAGCGAGAATATT+AGG 0.282531 4.4:+85065185 MS.gene47841:CDS
ATACTTTGCATGGTCCCTTT+TGG 0.290939 4.4:+85067115 MS.gene47841:CDS
CAGGGTCAAAATGGTGTAAT+AGG 0.298560 4.4:+85065870 MS.gene47841:CDS
ACGAAATATCAGGGTCAAAA+TGG 0.301030 4.4:+85065861 MS.gene47841:CDS
CTTTGTGGATATTTGCTTCC+TGG 0.303992 4.4:+85065707 MS.gene47841:CDS
TGTTTGTCCAAAAGGGATTC+AGG 0.306903 4.4:+85066564 MS.gene47841:CDS
ATTGTTAATGTGGCTTTATC+AGG 0.308851 4.4:+85066303 MS.gene47841:CDS
GACGGATACACTGTGCGTTT+TGG 0.311280 4.4:+85067155 MS.gene47841:CDS
GACGCCCTTGATTTCATGTT+TGG 0.312958 4.4:+85065960 MS.gene47841:CDS
AGTAGGTCCTGAATCCCTTT+TGG 0.348435 4.4:-85066571 None:intergenic
CAAGCCTTACAAGATGATTA+TGG 0.348583 4.4:+85065160 MS.gene47841:CDS
TCTAATGGGTCAGTTGAGTA+TGG 0.348923 4.4:-85065921 None:intergenic
TGGCTATATGTTTGTCCAAA+AGG 0.350579 4.4:+85066556 MS.gene47841:CDS
AATGTATAAAACGAAATATC+AGG 0.351551 4.4:+85065851 MS.gene47841:CDS
ATAATCATCTTGTAAGGCTT+GGG 0.354884 4.4:-85065158 None:intergenic
ATCGATGAGCTACTTAATAA+TGG 0.365239 4.4:+85065007 MS.gene47841:CDS
AGCTCTCTGCCCGATGGTTT+AGG 0.372347 4.4:+85067222 MS.gene47841:CDS
TTGTAAAATCTAATTCCGTC+TGG 0.379933 4.4:-85064977 None:intergenic
CAATATCCTTGGCCAAGATA+TGG 0.382965 4.4:-85064833 None:intergenic
TCTGCAGCGGGCGGCGCCGA+CGG 0.383995 4.4:+85066261 MS.gene47841:CDS
AGGCAAGGTGTGAATGTAAA+AGG 0.387936 4.4:+85067092 MS.gene47841:intron
ACATAAGACACCATGCTTGC+TGG 0.388660 4.4:-85066111 None:intergenic
CTATTACTTGGCAATATCCT+TGG 0.390771 4.4:-85064844 None:intergenic
TTACTTTGTCTCCAAATTCC+AGG 0.398270 4.4:-85065725 None:intergenic
GCTGCAGAATGTAGAGGAAT+TGG 0.402462 4.4:-85066246 None:intergenic
TCCATTCAAAGTTGTCCAAA+AGG 0.405927 4.4:-85067130 None:intergenic
GTATCCATGAGCGCCTCTTC+GGG 0.415324 4.4:-85066901 None:intergenic
CATACAGATTCTCCATATCT+TGG 0.418726 4.4:+85064821 MS.gene47841:CDS
CATAATCATCTTGTAAGGCT+TGG 0.430388 4.4:-85065159 None:intergenic
AGTATCCATGAGCGCCTCTT+CGG 0.431108 4.4:-85066902 None:intergenic
GGCTATATGTTTGTCCAAAA+GGG 0.435266 4.4:+85066557 MS.gene47841:CDS
AACCATCGGGCAGAGAGCTT+AGG 0.440435 4.4:-85067218 None:intergenic
GATTGCTCTTGAGTGAACTT+TGG 0.449878 4.4:-85066147 None:intergenic
TTGGAGACAAAGTAAAGCAT+TGG 0.451185 4.4:+85065733 MS.gene47841:CDS
TGGAGACAAAGTAAAGCATT+GGG 0.453879 4.4:+85065734 MS.gene47841:CDS
ACCATCGGGCAGAGAGCTTA+GGG 0.457955 4.4:-85067217 None:intergenic
TTTATACAACCACTGACAAC+AGG 0.469475 4.4:+85066081 MS.gene47841:CDS
CAAAATGGTGTAATAGGCAT+TGG 0.471411 4.4:+85065876 MS.gene47841:CDS
ACCATCCAAACATGAAATCA+AGG 0.473106 4.4:-85065965 None:intergenic
AGCAAGCATGGTGTCTTATG+TGG 0.473776 4.4:+85066113 MS.gene47841:CDS
ATGACAGATGTGAATAAAGA+AGG 0.474887 4.4:+85066435 MS.gene47841:intron
AGCAATCTAAGAGTCTTATT+GGG 0.478362 4.4:+85066163 MS.gene47841:CDS
GCCTCCATAATCATCTTGTA+AGG 0.480473 4.4:-85065164 None:intergenic
ACATGAAATCAAGGGCGTCT+TGG 0.480862 4.4:-85065956 None:intergenic
ACACTTTGAGTACATCAGAT+TGG 0.486476 4.4:+85065781 MS.gene47841:CDS
GCATTGGATTAAACTCTCAC+TGG 0.490284 4.4:+85065892 MS.gene47841:CDS
CCATTCAAAGTTGTCCAAAA+GGG 0.499789 4.4:-85067129 None:intergenic
ATCACCCGAAGAGGCGCTCA+TGG 0.501395 4.4:+85066897 MS.gene47841:CDS
CCCTTGATTTCATGTTTGGA+TGG 0.504970 4.4:+85065964 MS.gene47841:CDS
TGTAAAATCTAATTCCGTCT+GGG 0.505528 4.4:-85064976 None:intergenic
AGGAATTGGTTTCGTTGCAT+TGG 0.510612 4.4:-85066232 None:intergenic
GTACTCAAAGTGTAAGAGAA+TGG 0.519200 4.4:-85065771 None:intergenic
GACAACTTTGAATGGAATGA+CGG 0.527539 4.4:+85067137 MS.gene47841:CDS
CATCTGCATGAGCAAGAAGT+TGG 0.530133 4.4:-85065821 None:intergenic
AATATGTGCAGGCTGCAACT+TGG 0.539391 4.4:+85066536 MS.gene47841:intron
AAGAAACTTCCTAAACCATC+GGG 0.539660 4.4:-85067231 None:intergenic
CAAGAAACTTCCTAAACCAT+CGG 0.543501 4.4:-85067232 None:intergenic
ATGCAGAAGGAAAACTAAGT+GGG 0.545587 4.4:+85064945 MS.gene47841:intron
GCCTCTTCGGGTGATAGTGT+TGG 0.552813 4.4:-85066889 None:intergenic
TTTCCTTTGTGTACAACAGT+AGG 0.554600 4.4:-85066588 None:intergenic
AATAAAGAAGGGATATACAT+TGG 0.556345 4.4:+85066447 MS.gene47841:CDS
GAAATCAAGGGCGTCTTGGA+CGG 0.557749 4.4:-85065952 None:intergenic
GAAGTTGGTTGTGTGTTGAC+TGG 0.560031 4.4:-85065806 None:intergenic
GATTCTCCATATCTTGGCCA+AGG 0.571513 4.4:+85064827 MS.gene47841:CDS
ATTCCTCTACATTCTGCAGC+GGG 0.574502 4.4:+85066249 MS.gene47841:CDS
TGACAGATGTGAATAAAGAA+GGG 0.575495 4.4:+85066436 MS.gene47841:intron
ATGTATAAAACGAAATATCA+GGG 0.576545 4.4:+85065852 MS.gene47841:CDS
AGGAGAGTATCCAGCAAGCA+TGG 0.588296 4.4:+85066101 MS.gene47841:CDS
TATGCAGAAGGAAAACTAAG+TGG 0.588404 4.4:+85064944 MS.gene47841:intron
AGGGATATACATTGGACCAT+GGG 0.596300 4.4:+85066455 MS.gene47841:CDS
GGATACTCTCCTGTTGTCAG+TGG 0.601924 4.4:-85066090 None:intergenic
GCAAGCATGGTGTCTTATGT+GGG 0.610839 4.4:+85066114 MS.gene47841:CDS
TGCAGAAGGAAAACTAAGTG+GGG 0.612476 4.4:+85064946 MS.gene47841:intron
TAATCATCTTGTAAGGCTTG+GGG 0.615173 4.4:-85065157 None:intergenic
ACCCTAAGCTCTCTGCCCGA+TGG 0.617320 4.4:+85067216 MS.gene47841:CDS
AAGGGATATACATTGGACCA+TGG 0.619344 4.4:+85066454 MS.gene47841:CDS
ATGTAAAAGGATACTTTGCA+TGG 0.622027 4.4:+85067105 MS.gene47841:CDS
CCGCCCGCTGCAGAATGTAG+AGG 0.622346 4.4:-85066252 None:intergenic
TCCAACACTATCACCCGAAG+AGG 0.623179 4.4:+85066888 MS.gene47841:CDS
CCTCTACATTCTGCAGCGGG+CGG 0.632639 4.4:+85066252 MS.gene47841:CDS
GCCTTACAAGATGATTATGG+AGG 0.632737 4.4:+85065163 MS.gene47841:CDS
AATTCCTCTACATTCTGCAG+CGG 0.640213 4.4:+85066248 MS.gene47841:CDS
CCATCCAAACATGAAATCAA+GGG 0.640294 4.4:-85065964 None:intergenic
GAAAACACTATTAACGCCGT+CGG 0.643210 4.4:-85066277 None:intergenic
TGCATTGGCAGCATACATGC+TGG 0.650774 4.4:-85066217 None:intergenic
GGACCTACTGTTGTACACAA+AGG 0.659998 4.4:+85066585 MS.gene47841:CDS
GCAGAAGGAAAACTAAGTGG+GGG 0.675074 4.4:+85064947 MS.gene47841:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCATAATAATATAAATTGA+TGG + chr4.4:85065082-85065101 MS.gene47841:intron 10.0%
!! TTCTAATAAATTTAAATCAT+AGG + chr4.4:85066847-85066866 MS.gene47841:intron 10.0%
!!! TTGACTATATTATTATTTTT+TGG + chr4.4:85067057-85067076 MS.gene47841:intron 10.0%
!! AAATAATTTATGTCAAACAA+GGG - chr4.4:85066403-85066422 None:intergenic 15.0%
!! ATTCAAGAAATAATAAATTG+AGG + chr4.4:85065610-85065629 MS.gene47841:intron 15.0%
!! GTAATAGAAAATGTTTAATT+TGG + chr4.4:85064860-85064879 MS.gene47841:intron 15.0%
!! TATGATATACTAATAAAGTA+TGG - chr4.4:85065047-85065066 None:intergenic 15.0%
!!! ATTAAACATTTTCTATTACT+TGG - chr4.4:85064859-85064878 None:intergenic 15.0%
!!! ATTTTGATTTAAGTAAATAG+AGG - chr4.4:85066988-85067007 None:intergenic 15.0%
!!! TTTTGATTTAAGTAAATAGA+GGG - chr4.4:85066987-85067006 None:intergenic 15.0%
!! AATGTATAAAACGAAATATC+AGG + chr4.4:85065851-85065870 MS.gene47841:CDS 20.0%
!! ATGTATAAAACGAAATATCA+GGG + chr4.4:85065852-85065871 MS.gene47841:CDS 20.0%
!! ATTCTAATGTTAGTTAGTTA+TGG - chr4.4:85065564-85065583 None:intergenic 20.0%
!! CTTGAACATAATAGAATTAT+TGG + chr4.4:85067251-85067270 MS.gene47841:CDS 20.0%
!! GAAATAATTTATGTCAAACA+AGG - chr4.4:85066404-85066423 None:intergenic 20.0%
!! TGTTTGACATAAATTATTTC+TGG + chr4.4:85066404-85066423 MS.gene47841:intron 20.0%
!!! AATTTTATTTATCTGTTTGC+AGG + chr4.4:85066058-85066077 MS.gene47841:intron 20.0%
!!! TATATGCAGAAAAGATTTTA+AGG + chr4.4:85065683-85065702 MS.gene47841:intron 20.0%
!!! TGTTTTCAAAATTGTTAATG+TGG + chr4.4:85066293-85066312 MS.gene47841:CDS 20.0%
! AATAAAGAAGGGATATACAT+TGG + chr4.4:85066447-85066466 MS.gene47841:CDS 25.0%
! AATAACTAAACAATATGTGC+AGG + chr4.4:85066525-85066544 MS.gene47841:intron 25.0%
! ACCATTATCATAACAGAAAA+TGG + chr4.4:85066625-85066644 MS.gene47841:CDS 25.0%
! ATAAATCCAACTATGTTTGT+TGG - chr4.4:85065541-85065560 None:intergenic 25.0%
! ATACATTGTGAGAGAATATT+AGG - chr4.4:85066783-85066802 None:intergenic 25.0%
! GTTTATAAGACACTGAAAAA+AGG - chr4.4:85066814-85066833 None:intergenic 25.0%
! TAACTAACTAGTTAGTTAGT+TGG - chr4.4:85065498-85065517 None:intergenic 25.0%
!! ACCATTTTCTGTTATGATAA+TGG - chr4.4:85066629-85066648 None:intergenic 25.0%
!! ATTATCTTTTATCTGCAATG+AGG + chr4.4:85066956-85066975 MS.gene47841:CDS 25.0%
!! ATTGGGTCATATGATTTTAT+TGG + chr4.4:85066180-85066199 MS.gene47841:CDS 25.0%
!!! AAAAGATTTTAAGGACTTTG+TGG + chr4.4:85065692-85065711 MS.gene47841:CDS 25.0%
!!! TTTTCTGTTATGATAATGGT+AGG - chr4.4:85066625-85066644 None:intergenic 25.0%
!!! TTTTTTGGTTTTTTGTGTGA+AGG + chr4.4:85067072-85067091 MS.gene47841:intron 25.0%
AACTCTAACAAATATGCAGA+AGG + chr4.4:85064932-85064951 MS.gene47841:intron 30.0%
ATAATCATCTTGTAAGGCTT+GGG - chr4.4:85065161-85065180 None:intergenic 30.0%
ATCGATGAGCTACTTAATAA+TGG + chr4.4:85065007-85065026 MS.gene47841:CDS 30.0%
ATGACAGATGTGAATAAAGA+AGG + chr4.4:85066435-85066454 MS.gene47841:intron 30.0%
ATGTAAAAGGATACTTTGCA+TGG + chr4.4:85067105-85067124 MS.gene47841:CDS 30.0%
ATTGATGGAATTATTGATCC+AGG + chr4.4:85065097-85065116 MS.gene47841:intron 30.0%
GTTAGAGTTGTTAATGCATA+TGG - chr4.4:85064921-85064940 None:intergenic 30.0%
TGACAGATGTGAATAAAGAA+GGG + chr4.4:85066436-85066455 MS.gene47841:intron 30.0%
TGATTTATGCCATCTTCATT+AGG - chr4.4:85066351-85066370 None:intergenic 30.0%
TGTAAAATCTAATTCCGTCT+GGG - chr4.4:85064979-85064998 None:intergenic 30.0%
TGTAGAGATCATTCTAATCT+CGG - chr4.4:85065318-85065337 None:intergenic 30.0%
TTGTAAAATCTAATTCCGTC+TGG - chr4.4:85064980-85064999 None:intergenic 30.0%
! CGAGAAAGATTAGAATGTTT+TGG + chr4.4:85065254-85065273 MS.gene47841:intron 30.0%
!! AGCAATCTAAGAGTCTTATT+GGG + chr4.4:85066163-85066182 MS.gene47841:CDS 30.0%
!! ATATGTGACCCTTTTTCATT+GGG + chr4.4:85065129-85065148 MS.gene47841:CDS 30.0%
!! ATTGTTAATGTGGCTTTATC+AGG + chr4.4:85066303-85066322 MS.gene47841:CDS 30.0%
AACCAACCAACAAACATAGT+TGG + chr4.4:85065532-85065551 MS.gene47841:intron 35.0%
AAGAAACTTCCTAAACCATC+GGG - chr4.4:85067234-85067253 None:intergenic 35.0%
ACACTTTGAGTACATCAGAT+TGG + chr4.4:85065781-85065800 MS.gene47841:CDS 35.0%
ACCATCCAAACATGAAATCA+AGG - chr4.4:85065968-85065987 None:intergenic 35.0%
ACGAAATATCAGGGTCAAAA+TGG + chr4.4:85065861-85065880 MS.gene47841:CDS 35.0%
ATCCATGGTTGTTGTAGAAA+CGG - chr4.4:85066009-85066028 None:intergenic 35.0%
ATGCAGAAGGAAAACTAAGT+GGG + chr4.4:85064945-85064964 MS.gene47841:intron 35.0%
CAAAATGGTGTAATAGGCAT+TGG + chr4.4:85065876-85065895 MS.gene47841:CDS 35.0%
CAAGAAACTTCCTAAACCAT+CGG - chr4.4:85067235-85067254 None:intergenic 35.0%
CAAGCCTTACAAGATGATTA+TGG + chr4.4:85065160-85065179 MS.gene47841:CDS 35.0%
CAATGAAAAAGGGTCACATA+TGG - chr4.4:85065130-85065149 None:intergenic 35.0%
CATAATCATCTTGTAAGGCT+TGG - chr4.4:85065162-85065181 None:intergenic 35.0%
CATACAGATTCTCCATATCT+TGG + chr4.4:85064821-85064840 MS.gene47841:CDS 35.0%
CCATCCAAACATGAAATCAA+GGG - chr4.4:85065967-85065986 None:intergenic 35.0%
CCATTCAAAGTTGTCCAAAA+GGG - chr4.4:85067132-85067151 None:intergenic 35.0%
CTAGTTAGTTAGTTGGTTAG+TGG - chr4.4:85065491-85065510 None:intergenic 35.0%
CTATTACTTGGCAATATCCT+TGG - chr4.4:85064847-85064866 None:intergenic 35.0%
GACAACTTTGAATGGAATGA+CGG + chr4.4:85067137-85067156 MS.gene47841:CDS 35.0%
GATATTTGCTTCCTGGAATT+TGG + chr4.4:85065714-85065733 MS.gene47841:CDS 35.0%
GGCTATATGTTTGTCCAAAA+GGG + chr4.4:85066557-85066576 MS.gene47841:CDS 35.0%
GTACTCAAAGTGTAAGAGAA+TGG - chr4.4:85065774-85065793 None:intergenic 35.0%
TAATCATCTTGTAAGGCTTG+GGG - chr4.4:85065160-85065179 None:intergenic 35.0%
TATGCAGAAGGAAAACTAAG+TGG + chr4.4:85064944-85064963 MS.gene47841:intron 35.0%
TCCATTCAAAGTTGTCCAAA+AGG - chr4.4:85067133-85067152 None:intergenic 35.0%
TGGCTATATGTTTGTCCAAA+AGG + chr4.4:85066556-85066575 MS.gene47841:CDS 35.0%
TTACTTTGTCTCCAAATTCC+AGG - chr4.4:85065728-85065747 None:intergenic 35.0%
TTGGAGACAAAGTAAAGCAT+TGG + chr4.4:85065733-85065752 MS.gene47841:CDS 35.0%
TTTATACAACCACTGACAAC+AGG + chr4.4:85066081-85066100 MS.gene47841:CDS 35.0%
TTTCCTTTGTGTACAACAGT+AGG - chr4.4:85066591-85066610 None:intergenic 35.0%
! AACTATGTTTGTTGGTTGGT+TGG - chr4.4:85065533-85065552 None:intergenic 35.0%
! ATCCAACTATGTTTGTTGGT+TGG - chr4.4:85065537-85065556 None:intergenic 35.0%
! GAGCAATCTAAGAGTCTTAT+TGG + chr4.4:85066162-85066181 MS.gene47841:CDS 35.0%
! TGGAGACAAAGTAAAGCATT+GGG + chr4.4:85065734-85065753 MS.gene47841:CDS 35.0%
!! CATATGTGACCCTTTTTCAT+TGG + chr4.4:85065128-85065147 MS.gene47841:CDS 35.0%
AAGGGATATACATTGGACCA+TGG + chr4.4:85066454-85066473 MS.gene47841:CDS 40.0%
AATTCCTCTACATTCTGCAG+CGG + chr4.4:85066248-85066267 MS.gene47841:CDS 40.0%
AGGCAAGGTGTGAATGTAAA+AGG + chr4.4:85067092-85067111 MS.gene47841:intron 40.0%
AGGGATATACATTGGACCAT+GGG + chr4.4:85066455-85066474 MS.gene47841:CDS 40.0%
CAATATCCTTGGCCAAGATA+TGG - chr4.4:85064836-85064855 None:intergenic 40.0%
CAGGGTCAAAATGGTGTAAT+AGG + chr4.4:85065870-85065889 MS.gene47841:CDS 40.0%
CCCTTGATTTCATGTTTGGA+TGG + chr4.4:85065964-85065983 MS.gene47841:CDS 40.0%
CTTTGTGGATATTTGCTTCC+TGG + chr4.4:85065707-85065726 MS.gene47841:CDS 40.0%
GAAAACACTATTAACGCCGT+CGG - chr4.4:85066280-85066299 None:intergenic 40.0%
GATTGCTCTTGAGTGAACTT+TGG - chr4.4:85066150-85066169 None:intergenic 40.0%
GCATTGGATTAAACTCTCAC+TGG + chr4.4:85065892-85065911 MS.gene47841:CDS 40.0%
GCCTCCATAATCATCTTGTA+AGG - chr4.4:85065167-85065186 None:intergenic 40.0%
GCCTTACAAGATGATTATGG+AGG + chr4.4:85065163-85065182 MS.gene47841:CDS 40.0%
GCTTTGTCAGCGAGAATATT+AGG + chr4.4:85065185-85065204 MS.gene47841:CDS 40.0%
GGGAAGATCCCAATGAAAAA+GGG - chr4.4:85065140-85065159 None:intergenic 40.0%
GTCACATATGGTATTTGACC+TGG - chr4.4:85065118-85065137 None:intergenic 40.0%
TATGCCATCTTCATTAGGAG+TGG - chr4.4:85066346-85066365 None:intergenic 40.0%
TGCAGAAGGAAAACTAAGTG+GGG + chr4.4:85064946-85064965 MS.gene47841:intron 40.0%
TGTTTGTCCAAAAGGGATTC+AGG + chr4.4:85066564-85066583 MS.gene47841:CDS 40.0%
TTCATTAGGAGTGGTGAGAA+AGG - chr4.4:85066337-85066356 None:intergenic 40.0%
! AGGAATTGGTTTCGTTGCAT+TGG - chr4.4:85066235-85066254 None:intergenic 40.0%
! ATACTTTGCATGGTCCCTTT+TGG + chr4.4:85067115-85067134 MS.gene47841:CDS 40.0%
! ATGTTTGTTGGTTGGTTGGT+TGG - chr4.4:85065529-85065548 None:intergenic 40.0%
! CACAATTTTGTCACGATCCA+TGG - chr4.4:85066024-85066043 None:intergenic 40.0%
! CCCTTTTGGACAACTTTGAA+TGG + chr4.4:85067129-85067148 MS.gene47841:CDS 40.0%
! GGACGGCTTTTTGATCTAAT+GGG - chr4.4:85065938-85065957 None:intergenic 40.0%
! TCTAATGGGTCAGTTGAGTA+TGG - chr4.4:85065924-85065943 None:intergenic 40.0%
! TGGACGGCTTTTTGATCTAA+TGG - chr4.4:85065939-85065958 None:intergenic 40.0%
!!! TGGTTTTTTGTGTGAAGGCA+AGG + chr4.4:85067077-85067096 MS.gene47841:intron 40.0%
AAGAGAGTCTTACTCACCCA+TGG - chr4.4:85066474-85066493 None:intergenic 45.0%
AATATGTGCAGGCTGCAACT+TGG + chr4.4:85066536-85066555 MS.gene47841:intron 45.0%
ACATAAGACACCATGCTTGC+TGG - chr4.4:85066114-85066133 None:intergenic 45.0%
AGCAAGCATGGTGTCTTATG+TGG + chr4.4:85066113-85066132 MS.gene47841:CDS 45.0%
ATGGGTGAGTAAGACTCTCT+TGG + chr4.4:85066473-85066492 MS.gene47841:intron 45.0%
ATTCCTCTACATTCTGCAGC+GGG + chr4.4:85066249-85066268 MS.gene47841:CDS 45.0%
CATCTGCATGAGCAAGAAGT+TGG - chr4.4:85065824-85065843 None:intergenic 45.0%
CTCACCACTCCTAATGAAGA+TGG + chr4.4:85066339-85066358 MS.gene47841:intron 45.0%
GACCGTTTCTACAACAACCA+TGG + chr4.4:85066004-85066023 MS.gene47841:intron 45.0%
GACGCCCTTGATTTCATGTT+TGG + chr4.4:85065960-85065979 MS.gene47841:CDS 45.0%
GATTCTCCATATCTTGGCCA+AGG + chr4.4:85064827-85064846 MS.gene47841:CDS 45.0%
GCAAGCATGGTGTCTTATGT+GGG + chr4.4:85066114-85066133 MS.gene47841:CDS 45.0%
GCAGAAGGAAAACTAAGTGG+GGG + chr4.4:85064947-85064966 MS.gene47841:intron 45.0%
GCTGCAGAATGTAGAGGAAT+TGG - chr4.4:85066249-85066268 None:intergenic 45.0%
GGACCTACTGTTGTACACAA+AGG + chr4.4:85066585-85066604 MS.gene47841:CDS 45.0%
GGGGAAGATCCCAATGAAAA+AGG - chr4.4:85065141-85065160 None:intergenic 45.0%
! AGTAGGTCCTGAATCCCTTT+TGG - chr4.4:85066574-85066593 None:intergenic 45.0%
! GAAGTTGGTTGTGTGTTGAC+TGG - chr4.4:85065809-85065828 None:intergenic 45.0%
!! ACATGAAATCAAGGGCGTCT+TGG - chr4.4:85065959-85065978 None:intergenic 45.0%
AGTATCCATGAGCGCCTCTT+CGG - chr4.4:85066905-85066924 None:intergenic 50.0%
GGATACTCTCCTGTTGTCAG+TGG - chr4.4:85066093-85066112 None:intergenic 50.0%
TCCAACACTATCACCCGAAG+AGG + chr4.4:85066888-85066907 MS.gene47841:CDS 50.0%
! GACGGATACACTGTGCGTTT+TGG + chr4.4:85067155-85067174 MS.gene47841:CDS 50.0%
! TGCATTGGCAGCATACATGC+TGG - chr4.4:85066220-85066239 None:intergenic 50.0%
!! AGGAGAGTATCCAGCAAGCA+TGG + chr4.4:85066101-85066120 MS.gene47841:CDS 50.0%
!! AGTGGGGGTATTAACCCAGA+CGG + chr4.4:85064962-85064981 MS.gene47841:CDS 50.0%
!! GAAATCAAGGGCGTCTTGGA+CGG - chr4.4:85065955-85065974 None:intergenic 50.0%
AACCATCGGGCAGAGAGCTT+AGG - chr4.4:85067221-85067240 None:intergenic 55.0%
ACCATCGGGCAGAGAGCTTA+GGG - chr4.4:85067220-85067239 None:intergenic 55.0%
AGCTCTCTGCCCGATGGTTT+AGG + chr4.4:85067222-85067241 MS.gene47841:CDS 55.0%
GTATCCATGAGCGCCTCTTC+GGG - chr4.4:85066904-85066923 None:intergenic 55.0%
! GCCTCTTCGGGTGATAGTGT+TGG - chr4.4:85066892-85066911 None:intergenic 55.0%
ACCCTAAGCTCTCTGCCCGA+TGG + chr4.4:85067216-85067235 MS.gene47841:CDS 60.0%
CCTCTACATTCTGCAGCGGG+CGG + chr4.4:85066252-85066271 MS.gene47841:CDS 60.0%
!! ATCACCCGAAGAGGCGCTCA+TGG + chr4.4:85066897-85066916 MS.gene47841:CDS 60.0%
CCGCCCGCTGCAGAATGTAG+AGG - chr4.4:85066255-85066274 None:intergenic 65.0%
!! TCTGCAGCGGGCGGCGCCGA+CGG + chr4.4:85066261-85066280 MS.gene47841:CDS 80.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 85064799 85067277 85064799 ID=MS.gene47841
chr4.4 mRNA 85064799 85067277 85064799 ID=MS.gene47841.t1;Parent=MS.gene47841
chr4.4 exon 85064799 85064859 85064799 ID=MS.gene47841.t1.exon1;Parent=MS.gene47841.t1
chr4.4 CDS 85064799 85064859 85064799 ID=cds.MS.gene47841.t1;Parent=MS.gene47841.t1
chr4.4 exon 85064951 85065028 85064951 ID=MS.gene47841.t1.exon2;Parent=MS.gene47841.t1
chr4.4 CDS 85064951 85065028 85064951 ID=cds.MS.gene47841.t1;Parent=MS.gene47841.t1
chr4.4 exon 85065119 85065206 85065119 ID=MS.gene47841.t1.exon3;Parent=MS.gene47841.t1
chr4.4 CDS 85065119 85065206 85065119 ID=cds.MS.gene47841.t1;Parent=MS.gene47841.t1
chr4.4 exon 85065692 85065985 85065692 ID=MS.gene47841.t1.exon4;Parent=MS.gene47841.t1
chr4.4 CDS 85065692 85065985 85065692 ID=cds.MS.gene47841.t1;Parent=MS.gene47841.t1
chr4.4 exon 85066080 85066324 85066080 ID=MS.gene47841.t1.exon5;Parent=MS.gene47841.t1
chr4.4 CDS 85066080 85066324 85066080 ID=cds.MS.gene47841.t1;Parent=MS.gene47841.t1
chr4.4 exon 85066442 85066476 85066442 ID=MS.gene47841.t1.exon6;Parent=MS.gene47841.t1
chr4.4 CDS 85066442 85066476 85066442 ID=cds.MS.gene47841.t1;Parent=MS.gene47841.t1
chr4.4 exon 85066547 85066646 85066547 ID=MS.gene47841.t1.exon7;Parent=MS.gene47841.t1
chr4.4 CDS 85066547 85066646 85066547 ID=cds.MS.gene47841.t1;Parent=MS.gene47841.t1
chr4.4 exon 85066869 85066977 85066869 ID=MS.gene47841.t1.exon8;Parent=MS.gene47841.t1
chr4.4 CDS 85066869 85066977 85066869 ID=cds.MS.gene47841.t1;Parent=MS.gene47841.t1
chr4.4 exon 85067094 85067277 85067094 ID=MS.gene47841.t1.exon9;Parent=MS.gene47841.t1
chr4.4 CDS 85067094 85067277 85067094 ID=cds.MS.gene47841.t1;Parent=MS.gene47841.t1
Gene Sequence

>MS.gene47841

ATGAAGAATATGAATACAGATGCATACAGATTCTCCATATCTTGGCCAAGGATATTGCCAAGTAATAGAAAATGTTTAATTTGGTTACATCATTAATGAGTTTCAACTAGTTGTATCTTCCATATGCATTAACAACTCTAACAAATATGCAGAAGGAAAACTAAGTGGGGGTATTAACCCAGACGGAATTAGATTTTACAAAAACTTGATCGATGAGCTACTTAATAATGGTAATGCATAATAATCCATACTTTATTAGTATATCATATTCATTATGTTCATATTCATAATAATATAAATTGATGGAATTATTGATCCAGGTCAAATACCATATGTGACCCTTTTTCATTGGGATCTTCCCCAAGCCTTACAAGATGATTATGGAGGCTTTGTCAGCGAGAATATTAGGTAAGTATTGTGACACAAATTTGATAGAAAATGCACATACAGAATTGCGAGAAAGATTAGAATGTTTTGGATACTTCAGAACGTTATGTATTGAGATTAGAATGATCTCCGAGATTAGAATGATCTCTACACACTCACACTTTAGAGATGAAACTATAAATGAATGATGAAACTCTACTGTTAAATGTGAGAGATATGAGTGATATATGTGAATTGTGATATATATCAACTGAATACAAAACAAGTACTTATAGACTAAGTTGAGTTACTTGCTCAACAAGCCACTAACCAACTAACTAACTAGTTAGTTACGAACTAACCAACCAACCAACCAACAAACATAGTTGGATTTATCCATAACTAACTAACATTAGAATATGAATTATACTTCAAAAAAAATTTCATTCAAGAAATAATAAATTGAGGATAGAGCATTATGACATTTTTTTTATTCATATAGTTGATTGTTTAATTTCTATATGCAGAAAAGATTTTAAGGACTTTGTGGATATTTGCTTCCTGGAATTTGGAGACAAAGTAAAGCATTGGGTTACTTTTAATGAGCCATTCTCTTACACTTTGAGTACATCAGATTGGTACCAGTCAACACACAACCAACTTCTTGCTCATGCAGATGTTGTCGAAATGTATAAAACGAAATATCAGGGTCAAAATGGTGTAATAGGCATTGGATTAAACTCTCACTGGTTTAAACCATACTCAACTGACCCATTAGATCAAAAAGCCGTCCAAGACGCCCTTGATTTCATGTTTGGATGGTAACAACTATACTTTTTGACCGTTTCTACAACAACCATGGATCGTGACAAAATTGTGACTGTATAAATTGAAATTTTATTTATCTGTTTGCAGGTTTATACAACCACTGACAACAGGAGAGTATCCAGCAAGCATGGTGTCTTATGTGGGAGATAAGTTACCAAAGTTCACTCAAGAGCAATCTAAGAGTCTTATTGGGTCATATGATTTTATTGGAATCAATTACTACACCAGCATGTATGCTGCCAATGCAACGAAACCAATTCCTCTACATTCTGCAGCGGGCGGCGCCGACGGCGTTAATAGTGTTTTCAAAATTGTTAATGTGGCTTTATCAGGTAAGAACACCTTTCTCACCACTCCTAATGAAGATGGCATAAATCATTAATAGAAAAATCAATGTGTGCTATGATCCCTTGTTTGACATAAATTATTTCTGGTATGACTCATGACAGATGTGAATAAAGAAGGGATATACATTGGACCATGGGTGAGTAAGACTCTCTTGGAATTATTGTTACATCTTATTTGATTGATGAATAACTAAACAATATGTGCAGGCTGCAACTTGGCTATATGTTTGTCCAAAAGGGATTCAGGACCTACTGTTGTACACAAAGGAAAAGTATAACAATCCTACCATTATCATAACAGAAAATGGTAATATTTATATTACATTCTTTTTTATTTTATTTTATTTAATTCTAACATAAAATTTAAGAAAATATATTATGTATGAATCAATCATTTTATATATTAAATCTACTAATTGTCATTAAAAAAAGAAAATACTCCTAATATTCTCTCACAATGTATTTCATTCTCCTTTTTTCAGTGTCTTATAAACTAAAATTTGAAAATTCTAATAAATTTAAATCATAGGTATGAATGAAGTCAATGATCCAACACTATCACCCGAAGAGGCGCTCATGGATACTTATAGAATTGATTACTTTTATCGTCATCTATATTATCTTTTATCTGCAATGAGGTAGCACCCTCTATTTACTTAAATCAAAATCAATTATATTATTTTCGCACTCTAATTTTTTAGTTTTATGCATTTAATTTTGACTATATTATTATTTTTTGGTTTTTTGTGTGAAGGCAAGGTGTGAATGTAAAAGGATACTTTGCATGGTCCCTTTTGGACAACTTTGAATGGAATGACGGATACACTGTGCGTTTTGGAATTAACTTTGTTGATTATGACAATGATCTTAGAAGACACCCTAAGCTCTCTGCCCGATGGTTTAGGAAGTTTCTTGAACATAATAGAATTATTGGTTGA

Protein sequence

>MS.gene47841.t1

MKNMNTDAYRFSISWPRILPKGKLSGGINPDGIRFYKNLIDELLNNGQIPYVTLFHWDLPQALQDDYGGFVSENIRKDFKDFVDICFLEFGDKVKHWVTFNEPFSYTLSTSDWYQSTHNQLLAHADVVEMYKTKYQGQNGVIGIGLNSHWFKPYSTDPLDQKAVQDALDFMFGWFIQPLTTGEYPASMVSYVGDKLPKFTQEQSKSLIGSYDFIGINYYTSMYAANATKPIPLHSAAGGADGVNSVFKIVNVALSDVNKEGIYIGPWAATWLYVCPKGIQDLLLYTKEKYNNPTIIITENGMNEVNDPTLSPEEALMDTYRIDYFYRHLYYLLSAMRQGVNVKGYFAWSLLDNFEWNDGYTVRFGINFVDYDNDLRRHPKLSARWFRKFLEHNRIIG