Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47858.t1 | XP_024629668.1 | 90 | 812 | 80 | 1 | 1 | 812 | 1 | 811 | 0.00E+00 | 1253.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47858.t1 | A0A396GNM2 | 84.1 | 837 | 108 | 1 | 1 | 812 | 1 | 837 | 0.0e+00 | 1243.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049272 | MS.gene47858 | 0.816704 | 4.82E-52 | -1.69E-46 |
| MS.gene050156 | MS.gene47858 | 0.822091 | 2.85E-53 | -1.69E-46 |
| MS.gene050844 | MS.gene47858 | 0.819621 | 1.06E-52 | -1.69E-46 |
| MS.gene051247 | MS.gene47858 | 0.804566 | 2.03E-49 | -1.69E-46 |
| MS.gene051719 | MS.gene47858 | 0.806806 | 6.88E-50 | -1.69E-46 |
| MS.gene051744 | MS.gene47858 | 0.814425 | 1.55E-51 | -1.69E-46 |
| MS.gene051957 | MS.gene47858 | 0.806135 | 9.53E-50 | -1.69E-46 |
| MS.gene052020 | MS.gene47858 | 0.843819 | 1.11E-58 | -1.69E-46 |
| MS.gene052190 | MS.gene47858 | 0.804081 | 2.56E-49 | -1.69E-46 |
| MS.gene052208 | MS.gene47858 | 0.817015 | 4.11E-52 | -1.69E-46 |
| MS.gene052519 | MS.gene47858 | 0.810896 | 9.18E-51 | -1.69E-46 |
| MS.gene052611 | MS.gene47858 | 0.830715 | 2.51E-55 | -1.69E-46 |
| MS.gene052612 | MS.gene47858 | 0.811448 | 6.97E-51 | -1.69E-46 |
| MS.gene052773 | MS.gene47858 | 0.80312 | 4.06E-49 | -1.69E-46 |
| MS.gene052863 | MS.gene47858 | 0.820689 | 6.01E-53 | -1.69E-46 |
| MS.gene053221 | MS.gene47858 | 0.809265 | 2.06E-50 | -1.69E-46 |
| MS.gene053226 | MS.gene47858 | 0.84698 | 1.54E-59 | -1.69E-46 |
| MS.gene053900 | MS.gene47858 | 0.811124 | 8.19E-51 | -1.69E-46 |
| MS.gene053966 | MS.gene47858 | 0.819612 | 1.06E-52 | -1.69E-46 |
| MS.gene053998 | MS.gene47858 | 0.806588 | 7.65E-50 | -1.69E-46 |
| MS.gene054467 | MS.gene47858 | 0.809459 | 1.87E-50 | -1.69E-46 |
| MS.gene054651 | MS.gene47858 | 0.826148 | 3.18E-54 | -1.69E-46 |
| MS.gene054775 | MS.gene47858 | 0.8198 | 9.60E-53 | -1.69E-46 |
| MS.gene055356 | MS.gene47858 | 0.804182 | 2.44E-49 | -1.69E-46 |
| MS.gene055512 | MS.gene47858 | 0.801872 | 7.33E-49 | -1.69E-46 |
| MS.gene055778 | MS.gene47858 | 0.80124 | 9.88E-49 | -1.69E-46 |
| MS.gene055818 | MS.gene47858 | 0.820905 | 5.36E-53 | -1.69E-46 |
| MS.gene056050 | MS.gene47858 | 0.827898 | 1.21E-54 | -1.69E-46 |
| MS.gene056173 | MS.gene47858 | 0.828442 | 8.97E-55 | -1.69E-46 |
| MS.gene05686 | MS.gene47858 | 0.814083 | 1.85E-51 | -1.69E-46 |
| MS.gene057693 | MS.gene47858 | 0.813328 | 2.71E-51 | -1.69E-46 |
| MS.gene057915 | MS.gene47858 | 0.827643 | 1.40E-54 | -1.69E-46 |
| MS.gene058037 | MS.gene47858 | 0.800881 | 1.17E-48 | -1.69E-46 |
| MS.gene058625 | MS.gene47858 | 0.848842 | 4.74E-60 | -1.69E-46 |
| MS.gene058829 | MS.gene47858 | 0.919692 | 3.28E-87 | -1.69E-46 |
| MS.gene058979 | MS.gene47858 | 0.827805 | 1.28E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47858.t1 | MTR_0009s0330 | 31.683 | 202 | 76 | 3 | 461 | 662 | 54 | 193 | 4.29e-29 | 115 |
| MS.gene47858.t1 | MTR_0031s0130 | 37.714 | 175 | 86 | 8 | 602 | 767 | 26 | 186 | 1.78e-18 | 86.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 180 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCCCAACCACCGACTTAA+AGG | 0.208074 | 4.4:-12787138 | None:intergenic |
| AAGATGTGATAACAGATATT+AGG | 0.229248 | 4.4:+12787614 | MS.gene47858:CDS |
| CGATCTCTCAAATTTCTCTT+TGG | 0.266239 | 4.4:-12781792 | None:intergenic |
| TCAACTTCAAATTCATTTGA+TGG | 0.278093 | 4.4:-12782606 | None:intergenic |
| TGATAATCCATCAAATGATT+TGG | 0.297456 | 4.4:+12782976 | MS.gene47858:CDS |
| CATTCTCTGCCTCCACCCTT+TGG | 0.298562 | 4.4:-12787247 | None:intergenic |
| TGATAATATATCAAATGAAT+TGG | 0.317818 | 4.4:+12781502 | MS.gene47858:CDS |
| CAATCATATATGCAGGGTTT+TGG | 0.318781 | 4.4:+12787161 | MS.gene47858:CDS |
| TGATAACCCATCAAATGAAT+TGG | 0.321881 | 4.4:+12781878 | MS.gene47858:CDS |
| AGCCTGATTTGCAGACATTA+TGG | 0.326446 | 4.4:+12786863 | MS.gene47858:CDS |
| CTCTTGCTTCTCTACAAACT+TGG | 0.328148 | 4.4:-12782263 | None:intergenic |
| AGCTAGATATCGCTTGTATT+AGG | 0.333158 | 4.4:+12787645 | MS.gene47858:CDS |
| TAATAATCCATCATTTGAAT+TGG | 0.339315 | 4.4:+12780021 | MS.gene47858:CDS |
| TTTGAATTGGAAGTTGATCT+TGG | 0.349340 | 4.4:+12780034 | MS.gene47858:CDS |
| ATGGCAGATAACACACAAAA+AGG | 0.350267 | 4.4:+12786882 | MS.gene47858:CDS |
| TGCCATAATGTCTGCAAATC+AGG | 0.351649 | 4.4:-12786865 | None:intergenic |
| TTCAGAAGACTTGACGCTTT+AGG | 0.351852 | 4.4:-12779959 | None:intergenic |
| ATTCTCTGCCTCCACCCTTT+GGG | 0.352470 | 4.4:-12787246 | None:intergenic |
| TTCAAAAGACTTGACGCTTT+AGG | 0.353871 | 4.4:-12782169 | None:intergenic |
| GGAGAATCAATCAAATGAAT+TGG | 0.357053 | 4.4:+12783473 | MS.gene47858:CDS |
| TCAACTTCCAATTCATTTGA+TGG | 0.360973 | 4.4:-12781885 | None:intergenic |
| GCAACTTCCAACTCATTTGA+TGG | 0.361666 | 4.4:-12783429 | None:intergenic |
| TTCTGAAGACTTGACACTTT+AGG | 0.365515 | 4.4:-12783360 | None:intergenic |
| TTCTGAAGAGTAGACGCTTT+AGG | 0.365624 | 4.4:-12781816 | None:intergenic |
| TGCTGAAGACTTGACGCTTT+AGG | 0.365823 | 4.4:-12780692 | None:intergenic |
| TGAGTCTGATTGGAAATTCT+TGG | 0.369640 | 4.4:+12786523 | MS.gene47858:CDS |
| TCAACTTCCAAATCATTTGA+TGG | 0.372340 | 4.4:-12782983 | None:intergenic |
| TCAGACTCATTGACGTCATC+AGG | 0.373190 | 4.4:-12786509 | None:intergenic |
| TTCTGAAGACTTGACACTTT+AGG | 0.373672 | 4.4:-12782537 | None:intergenic |
| ATGAAGCAGGCCGTTTATAT+CGG | 0.376195 | 4.4:+12786417 | MS.gene47858:CDS |
| TTCTGAAGACTGGACGCTTT+AGG | 0.376940 | 4.4:-12781440 | None:intergenic |
| TTCTGAAGACTTGACGCTTT+AGG | 0.380718 | 4.4:-12782914 | None:intergenic |
| GGACTCGACCTCAACAAGTT+TGG | 0.381644 | 4.4:-12787297 | None:intergenic |
| TCTTAAATTTCTCTTTGAAA+TGG | 0.395996 | 4.4:-12782508 | None:intergenic |
| TCAACTTCCAATTCAAATGA+TGG | 0.401502 | 4.4:-12780028 | None:intergenic |
| AGATGTGATAACAGATATTA+GGG | 0.404825 | 4.4:+12787615 | MS.gene47858:CDS |
| TCCTGCTCCTCTACAGAGTC+AGG | 0.409851 | 4.4:-12783504 | None:intergenic |
| CCGTCGCTCCTCTGCCAGTT+GGG | 0.412391 | 4.4:-12787318 | None:intergenic |
| ATAGTATCTTTAGTACTTTG+TGG | 0.414287 | 4.4:-12784904 | None:intergenic |
| TCCACTTGTTCACATTAAAA+CGG | 0.416746 | 4.4:-12784873 | None:intergenic |
| TTTGTAGAGGAGCAAGAAAC+AGG | 0.428602 | 4.4:+12781915 | MS.gene47858:CDS |
| TTTGTAGAGGAGCAGGCAAC+AGG | 0.431641 | 4.4:+12782636 | MS.gene47858:CDS |
| GATCAGTAATGAAGTCATTA+CGG | 0.436319 | 4.4:-12784825 | None:intergenic |
| AGGTTCCATGGCAAAGAGAA+AGG | 0.437723 | 4.4:+12783326 | MS.gene47858:intron |
| TCCTGCTCCTCTACAAGCTC+AGG | 0.439898 | 4.4:-12781533 | None:intergenic |
| TTGAATTGGAAGTTGATCTT+GGG | 0.441555 | 4.4:+12780035 | MS.gene47858:CDS |
| TTATCACATCTTCCGCCTCA+TGG | 0.446333 | 4.4:-12787603 | None:intergenic |
| TTTAACCTTCTTCTGAAGAC+TGG | 0.448256 | 4.4:-12781450 | None:intergenic |
| CCACTTGTTCACATTAAAAC+GGG | 0.448981 | 4.4:-12784872 | None:intergenic |
| TCTTGGGTTTGTAGAGGAGC+AGG | 0.450818 | 4.4:+12780051 | MS.gene47858:CDS |
| TCCTGAGCTTGTAGAGGAGC+AGG | 0.454298 | 4.4:+12781532 | MS.gene47858:CDS |
| GATGGATTATTAAGAACAAC+CGG | 0.455190 | 4.4:-12780010 | None:intergenic |
| CTGCCTTTAAGTCGGTGGTT+GGG | 0.460613 | 4.4:+12787135 | MS.gene47858:CDS |
| TTTGTAGAGGAGCAGGGGAC+AGG | 0.460722 | 4.4:+12780058 | MS.gene47858:CDS |
| CTTGTAGAGGAGCAGGAGAC+AGG | 0.461686 | 4.4:+12781539 | MS.gene47858:CDS |
| TAACAGCGGGACCCTGTGAC+TGG | 0.462835 | 4.4:+12786835 | MS.gene47858:intron |
| AGGCTGGTGGCTGTAGGTCC+AGG | 0.463225 | 4.4:+12784802 | MS.gene47858:CDS |
| TCCTGCTCCTCTAAAACGTC+AGG | 0.466770 | 4.4:-12783453 | None:intergenic |
| TCCGTCGCTCCTCTGCCAGT+TGG | 0.466866 | 4.4:-12787319 | None:intergenic |
| TCAACTTCTAATTCATTCGA+TGG | 0.467657 | 4.4:-12782238 | None:intergenic |
| TTGGTAGAGCAGCAGGTGAC+AGG | 0.469637 | 4.4:+12780791 | MS.gene47858:CDS |
| AGGTACCATGGCAAAGAGAA+AGG | 0.469697 | 4.4:+12779925 | None:intergenic |
| AGGTACCATGGCAAAGAGAA+AGG | 0.469697 | 4.4:+12782135 | MS.gene47858:intron |
| AGTGTCAAGTCTTCAGAAGC+AGG | 0.470712 | 4.4:+12782542 | MS.gene47858:CDS |
| TGAGGATGAGGTGGAAGTAA+TGG | 0.470828 | 4.4:+12787109 | MS.gene47858:CDS |
| CCTACAGCCACCAGCCTAGT+AGG | 0.471409 | 4.4:-12784796 | None:intergenic |
| TCCTGACTCTGTAGAGGAGC+AGG | 0.473160 | 4.4:+12783503 | MS.gene47858:CDS |
| TTGCTTCAGATACAAGAGTC+AGG | 0.473273 | 4.4:+12784680 | MS.gene47858:intron |
| TCTTCCCTTTCTCTTTGCCA+TGG | 0.473899 | 4.4:-12783331 | None:intergenic |
| TCTTGAGTTTGTAGAGGAGC+AGG | 0.474752 | 4.4:+12782629 | MS.gene47858:CDS |
| ACAGAGAGCAAATGTCAAAT+CGG | 0.476160 | 4.4:+12780724 | MS.gene47858:CDS |
| ACACAGTGCAAGTGTCGAAC+CGG | 0.477791 | 4.4:+12779991 | MS.gene47858:CDS |
| CAACTTCCAATTCATTTGAT+GGG | 0.479734 | 4.4:-12781884 | None:intergenic |
| TCAGGCTCCTTTCCAGTCAC+AGG | 0.480785 | 4.4:-12786847 | None:intergenic |
| CAAAGAGAAATTTAAGAGGT+AGG | 0.481287 | 4.4:+12782514 | MS.gene47858:CDS |
| AGCGTCAAGTCTTCTGAAGA+AGG | 0.484194 | 4.4:+12779964 | MS.gene47858:CDS |
| GATGGATTATCAAGAACAAC+CGG | 0.485164 | 4.4:-12782965 | None:intergenic |
| TCTTGCTTCTCTACAAACTT+GGG | 0.486475 | 4.4:-12782262 | None:intergenic |
| TCTGTAGAGGAGCAGGAGAC+AGG | 0.487186 | 4.4:+12783510 | MS.gene47858:CDS |
| TCTTCCCTTTCTCTTTGCCA+TGG | 0.488381 | 4.4:-12779930 | None:intergenic |
| TCTTCCCTTTCTCTTTGCCA+TGG | 0.488381 | 4.4:-12782140 | None:intergenic |
| TCCTGAGTTGGTAGAGCAGC+AGG | 0.491712 | 4.4:+12780784 | MS.gene47858:CDS |
| AGCGTCAAGTCTTCAGAAGC+AGG | 0.491830 | 4.4:+12782919 | MS.gene47858:CDS |
| GTCATCAGGGATATGCTTCA+AGG | 0.491897 | 4.4:-12786495 | None:intergenic |
| AGTGTCAAGTCTTCAGAAGA+AGG | 0.492126 | 4.4:+12783365 | MS.gene47858:CDS |
| TGGGAAGCAATCATATATGC+AGG | 0.493010 | 4.4:+12787154 | MS.gene47858:CDS |
| AGCGTCCAGTCTTCAGAAGA+AGG | 0.493186 | 4.4:+12781445 | MS.gene47858:CDS |
| TGTTGAGGTCGAGTCCCAAC+TGG | 0.495312 | 4.4:+12787304 | MS.gene47858:CDS |
| ATGTTGATATTCATCCTACT+AGG | 0.496819 | 4.4:+12784782 | MS.gene47858:CDS |
| TAATAATCCATCAAATGAGT+TGG | 0.498386 | 4.4:+12783422 | MS.gene47858:CDS |
| ATTTCAAAGAGAAATTTAAG+AGG | 0.499593 | 4.4:+12782510 | MS.gene47858:CDS |
| AGGCGTAAGAATAAAGTAAG+AGG | 0.500263 | 4.4:+12784700 | MS.gene47858:CDS |
| AAAGAGTGCAAATGTCAAAC+CGG | 0.503507 | 4.4:+12782946 | MS.gene47858:CDS |
| TATGCAGGAAATCAACAGTC+AGG | 0.507449 | 4.4:+12787385 | MS.gene47858:CDS |
| TGTTCGAGTTCAAGAGCTGC+AGG | 0.507588 | 4.4:+12787211 | MS.gene47858:CDS |
| TTCAAGATACAGATGTGGTT+CGG | 0.507876 | 4.4:+12786381 | MS.gene47858:CDS |
| TATATCGGAGTCGGCGCCAC+AGG | 0.507889 | 4.4:+12786432 | MS.gene47858:CDS |
| ATTGCAAAGAGAAAGTTAAG+AGG | 0.508898 | 4.4:+12782887 | MS.gene47858:CDS |
| TCTTAACTTTCTCTTTGCCA+TGG | 0.510685 | 4.4:-12780663 | None:intergenic |
| AGCGTCTACTCTTCAGAAGA+AGG | 0.514021 | 4.4:+12781821 | MS.gene47858:CDS |
| ATGACGTCAATGAGTCTGAT+TGG | 0.514502 | 4.4:+12786513 | MS.gene47858:CDS |
| TCTTGCTCCTCTACAAACTC+AGG | 0.514826 | 4.4:-12781909 | None:intergenic |
| AATCAATATACCTCAAAAGA+AGG | 0.514859 | 4.4:-12786563 | None:intergenic |
| CTCATTAACCCACTCCCCAT+TGG | 0.514976 | 4.4:-12786905 | None:intergenic |
| ACTGCCTTTAAGTCGGTGGT+TGG | 0.517338 | 4.4:+12787134 | MS.gene47858:CDS |
| TTTGTAGAGAAGCAAGAGAC+AGG | 0.517788 | 4.4:+12782268 | MS.gene47858:CDS |
| CAATGGGGAGTGGGTTAATG+AGG | 0.519160 | 4.4:+12786906 | MS.gene47858:CDS |
| GGTTCCATGGCAAAGAGAAA+GGG | 0.524638 | 4.4:+12783327 | MS.gene47858:intron |
| CAAAGAGAAATTTAAGAGAT+CGG | 0.525583 | 4.4:+12781417 | MS.gene47858:CDS |
| GGGTGGAGGCAGAGAATGCT+AGG | 0.531465 | 4.4:+12787252 | MS.gene47858:CDS |
| CCTACTAGGCTGGTGGCTGT+AGG | 0.536358 | 4.4:+12784796 | MS.gene47858:CDS |
| CAAAGAGAAATTTGAGAGAT+CGG | 0.538439 | 4.4:+12781793 | MS.gene47858:CDS |
| GGCTGAATTAGATGCCCAAA+GGG | 0.538742 | 4.4:+12787232 | MS.gene47858:CDS |
| AAGTACTAAAGATACTATAG+TGG | 0.543254 | 4.4:+12784909 | MS.gene47858:CDS |
| AATATTGAGACAATGCTGAC+TGG | 0.546405 | 4.4:-12787421 | None:intergenic |
| GCTAGAGAATTCTGAGGATG+AGG | 0.546881 | 4.4:+12787097 | MS.gene47858:CDS |
| TTACTTAAAATTTGAAACAA+AGG | 0.548318 | 4.4:+12786466 | MS.gene47858:CDS |
| TCTTAACTTTCTCTTTGCAA+TGG | 0.548391 | 4.4:-12782885 | None:intergenic |
| ATCAAAGCTAGCTGCTTGAA+AGG | 0.550346 | 4.4:-12786723 | None:intergenic |
| GAGTTTGTAGAGGAGGAGAC+AGG | 0.551866 | 4.4:+12783010 | MS.gene47858:CDS |
| AGCGTCAAGTCTTCAGCAGA+TGG | 0.555256 | 4.4:+12780697 | MS.gene47858:CDS |
| TGATCCCGAGTTTGTAGAGG+AGG | 0.555539 | 4.4:+12783003 | MS.gene47858:CDS |
| ACTGAGTCGAGATGGAAAGT+TGG | 0.556259 | 4.4:+12784759 | MS.gene47858:CDS |
| ACAGAGCGCAAATGTCAAAA+CGG | 0.556630 | 4.4:+12782569 | MS.gene47858:CDS |
| GTCTCCTCCTCTACAAACTC+GGG | 0.557059 | 4.4:-12783007 | None:intergenic |
| TGTCTCCTCCTCTACAAACT+CGG | 0.559934 | 4.4:-12783008 | None:intergenic |
| GGTACCATGGCAAAGAGAAA+GGG | 0.560767 | 4.4:+12779926 | None:intergenic |
| GGTACCATGGCAAAGAGAAA+GGG | 0.560767 | 4.4:+12782136 | MS.gene47858:intron |
| CCCAACTGGCAGAGGAGCGA+CGG | 0.564166 | 4.4:+12787318 | MS.gene47858:CDS |
| TGATATTCATCCTACTAGGC+TGG | 0.569996 | 4.4:+12784786 | MS.gene47858:CDS |
| CAAAGAGAAAGTTAAGAGGT+AGG | 0.570257 | 4.4:+12782891 | MS.gene47858:CDS |
| AAGGCGATTATCGATGAAGC+AGG | 0.570651 | 4.4:+12786404 | MS.gene47858:CDS |
| AGTTGATCTTGGGTTTGTAG+AGG | 0.572021 | 4.4:+12780045 | MS.gene47858:CDS |
| ATTAAGAGCCAAACTTGTTG+AGG | 0.572539 | 4.4:+12787289 | MS.gene47858:CDS |
| CTTGGGTTTGTAGAGGAGCA+GGG | 0.572912 | 4.4:+12780052 | MS.gene47858:CDS |
| GGTCGAGTCCCAACTGGCAG+AGG | 0.576269 | 4.4:+12787310 | MS.gene47858:CDS |
| AAGCGTAAACTGAGTCGAGA+TGG | 0.581874 | 4.4:+12784751 | MS.gene47858:CDS |
| ACCTGCTGCTCTACCAACTC+AGG | 0.584977 | 4.4:-12780785 | None:intergenic |
| ACGGAAACGAGAGGAGAGTG+AGG | 0.586157 | 4.4:+12787337 | MS.gene47858:CDS |
| ATTAGATGCCCAAAGGGTGG+AGG | 0.590973 | 4.4:+12787238 | MS.gene47858:CDS |
| TCTTAAATTTCTCTTTGACA+TGG | 0.592523 | 4.4:-12781411 | None:intergenic |
| CAAAGAGAAAGTTAAGAGAT+CGG | 0.594814 | 4.4:+12780669 | MS.gene47858:CDS |
| AGATACAGATGTGGTTCGGA+AGG | 0.597957 | 4.4:+12786385 | MS.gene47858:CDS |
| GTGTCAAGTCTTCAGAAGCA+GGG | 0.598010 | 4.4:+12782543 | MS.gene47858:CDS |
| GTAATGAAGTCATTACGGCC+TGG | 0.598380 | 4.4:-12784820 | None:intergenic |
| AGAGAATTCTGAGGATGAGG+TGG | 0.599063 | 4.4:+12787100 | MS.gene47858:CDS |
| AGTTGATCTTGAGTTTGTAG+AGG | 0.600145 | 4.4:+12782623 | MS.gene47858:CDS |
| CAGCGGATACATCATACTAG+TGG | 0.602911 | 4.4:+12786692 | MS.gene47858:CDS |
| GGAAACTGCCTTTAAGTCGG+TGG | 0.602974 | 4.4:+12787130 | MS.gene47858:CDS |
| AGTTGATCCCGAGTTTGTAG+AGG | 0.604279 | 4.4:+12783000 | MS.gene47858:CDS |
| GCGGGACCCTGTGACTGGAA+AGG | 0.604650 | 4.4:+12786840 | MS.gene47858:intron |
| GGCGCCGACTCCGATATAAA+CGG | 0.605809 | 4.4:-12786427 | None:intergenic |
| CAGACTCATTGACGTCATCA+GGG | 0.607592 | 4.4:-12786508 | None:intergenic |
| AGAGGAGCGACGGAAACGAG+AGG | 0.611564 | 4.4:+12787328 | MS.gene47858:CDS |
| AGATGATCCTGACTCTGTAG+AGG | 0.612790 | 4.4:+12783497 | MS.gene47858:CDS |
| TTGAGACAATGCTGACTGGA+TGG | 0.620427 | 4.4:-12787417 | None:intergenic |
| TTGGGTTTGTAGAGGAGCAG+GGG | 0.620467 | 4.4:+12780053 | MS.gene47858:CDS |
| AAAGTAAGAGGACAAACAAG+AGG | 0.624934 | 4.4:+12784712 | MS.gene47858:CDS |
| AGTTGATCCTGAGTTTGTAG+AGG | 0.626630 | 4.4:+12781902 | MS.gene47858:CDS |
| AGCGGATACATCATACTAGT+GGG | 0.626746 | 4.4:+12786693 | MS.gene47858:CDS |
| AATGGAAACTGCCTTTAAGT+CGG | 0.629497 | 4.4:+12787127 | MS.gene47858:CDS |
| TATTCATCCTACTAGGCTGG+TGG | 0.631094 | 4.4:+12784789 | MS.gene47858:CDS |
| CAGGCTCCTTTCCAGTCACA+GGG | 0.631724 | 4.4:-12786846 | None:intergenic |
| ATTTGAAGTTGATCCTGAGT+TGG | 0.632233 | 4.4:+12780772 | MS.gene47858:CDS |
| AGTTGATCCTGAGCTTGTAG+AGG | 0.632359 | 4.4:+12781526 | MS.gene47858:CDS |
| GGGAAGCAATCATATATGCA+GGG | 0.632925 | 4.4:+12787155 | MS.gene47858:CDS |
| AGGCTGAATTAGATGCCCAA+AGG | 0.633913 | 4.4:+12787231 | MS.gene47858:CDS |
| ATGGCAAAGAGAAAGGGAAG+AGG | 0.637485 | 4.4:+12779932 | MS.gene47858:CDS |
| CAGGCCGTTTATATCGGAGT+CGG | 0.645550 | 4.4:+12786423 | MS.gene47858:CDS |
| AAGTAAGAGGACAAACAAGA+GGG | 0.650275 | 4.4:+12784713 | MS.gene47858:CDS |
| ATGGCAAAGAGAAAGGGAAG+AGG | 0.656936 | 4.4:+12782142 | MS.gene47858:CDS |
| TGAATTAGATGCCCAAAGGG+TGG | 0.663302 | 4.4:+12787235 | MS.gene47858:CDS |
| CAAAGAGAAAGGGAAGATGT+CGG | 0.667696 | 4.4:+12783337 | MS.gene47858:CDS |
| TGAAGCACAACTCCATGAGG+CGG | 0.667829 | 4.4:+12787591 | MS.gene47858:CDS |
| GAGACTTCAAGATACAGATG+TGG | 0.668184 | 4.4:+12786376 | MS.gene47858:CDS |
| CAAAGAGAAAGGGAAGAGGT+CGG | 0.681304 | 4.4:+12782146 | MS.gene47858:CDS |
| AGTAATGCTCATGAAGCCTG+TGG | 0.683773 | 4.4:-12786448 | None:intergenic |
| GCTTGAAGCACAACTCCATG+AGG | 0.683823 | 4.4:+12787588 | MS.gene47858:CDS |
| GAGTCTGCTAGAGAATTCTG+AGG | 0.685882 | 4.4:+12787091 | MS.gene47858:CDS |
| AGGCAAGTAAGGCAAAACAG+CGG | 0.773909 | 4.4:+12786675 | MS.gene47858:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 12779932 | 12787666 | 12779932 | ID=MS.gene47858 |
| chr4.4 | mRNA | 12779932 | 12787666 | 12779932 | ID=MS.gene47858.t1;Parent=MS.gene47858 |
| chr4.4 | exon | 12779932 | 12780079 | 12779932 | ID=MS.gene47858.t1.exon1;Parent=MS.gene47858.t1 |
| chr4.4 | CDS | 12779932 | 12780079 | 12779932 | ID=cds.MS.gene47858.t1;Parent=MS.gene47858.t1 |
| chr4.4 | exon | 12780660 | 12780812 | 12780660 | ID=MS.gene47858.t1.exon2;Parent=MS.gene47858.t1 |
| chr4.4 | CDS | 12780660 | 12780812 | 12780660 | ID=cds.MS.gene47858.t1;Parent=MS.gene47858.t1 |
| chr4.4 | exon | 12781408 | 12781560 | 12781408 | ID=MS.gene47858.t1.exon3;Parent=MS.gene47858.t1 |
| chr4.4 | CDS | 12781408 | 12781560 | 12781408 | ID=cds.MS.gene47858.t1;Parent=MS.gene47858.t1 |
| chr4.4 | exon | 12781784 | 12781936 | 12781784 | ID=MS.gene47858.t1.exon4;Parent=MS.gene47858.t1 |
| chr4.4 | CDS | 12781784 | 12781936 | 12781784 | ID=cds.MS.gene47858.t1;Parent=MS.gene47858.t1 |
| chr4.4 | exon | 12782137 | 12782289 | 12782137 | ID=MS.gene47858.t1.exon5;Parent=MS.gene47858.t1 |
| chr4.4 | CDS | 12782137 | 12782289 | 12782137 | ID=cds.MS.gene47858.t1;Parent=MS.gene47858.t1 |
| chr4.4 | exon | 12782505 | 12782657 | 12782505 | ID=MS.gene47858.t1.exon6;Parent=MS.gene47858.t1 |
| chr4.4 | CDS | 12782505 | 12782657 | 12782505 | ID=cds.MS.gene47858.t1;Parent=MS.gene47858.t1 |
| chr4.4 | exon | 12782882 | 12783031 | 12782882 | ID=MS.gene47858.t1.exon7;Parent=MS.gene47858.t1 |
| chr4.4 | CDS | 12782882 | 12783031 | 12782882 | ID=cds.MS.gene47858.t1;Parent=MS.gene47858.t1 |
| chr4.4 | exon | 12783328 | 12783531 | 12783328 | ID=MS.gene47858.t1.exon8;Parent=MS.gene47858.t1 |
| chr4.4 | CDS | 12783328 | 12783531 | 12783328 | ID=cds.MS.gene47858.t1;Parent=MS.gene47858.t1 |
| chr4.4 | exon | 12784689 | 12784942 | 12784689 | ID=MS.gene47858.t1.exon9;Parent=MS.gene47858.t1 |
| chr4.4 | CDS | 12784689 | 12784942 | 12784689 | ID=cds.MS.gene47858.t1;Parent=MS.gene47858.t1 |
| chr4.4 | exon | 12786368 | 12786574 | 12786368 | ID=MS.gene47858.t1.exon10;Parent=MS.gene47858.t1 |
| chr4.4 | CDS | 12786368 | 12786574 | 12786368 | ID=cds.MS.gene47858.t1;Parent=MS.gene47858.t1 |
| chr4.4 | exon | 12786656 | 12786748 | 12786656 | ID=MS.gene47858.t1.exon11;Parent=MS.gene47858.t1 |
| chr4.4 | CDS | 12786656 | 12786748 | 12786656 | ID=cds.MS.gene47858.t1;Parent=MS.gene47858.t1 |
| chr4.4 | exon | 12786841 | 12786945 | 12786841 | ID=MS.gene47858.t1.exon12;Parent=MS.gene47858.t1 |
| chr4.4 | CDS | 12786841 | 12786945 | 12786841 | ID=cds.MS.gene47858.t1;Parent=MS.gene47858.t1 |
| chr4.4 | exon | 12787065 | 12787451 | 12787065 | ID=MS.gene47858.t1.exon13;Parent=MS.gene47858.t1 |
| chr4.4 | CDS | 12787065 | 12787451 | 12787065 | ID=cds.MS.gene47858.t1;Parent=MS.gene47858.t1 |
| chr4.4 | exon | 12787541 | 12787666 | 12787541 | ID=MS.gene47858.t1.exon14;Parent=MS.gene47858.t1 |
| chr4.4 | CDS | 12787541 | 12787666 | 12787541 | ID=cds.MS.gene47858.t1;Parent=MS.gene47858.t1 |
| Gene Sequence |
| Protein sequence |
