Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47928.t1 | XP_003630015.1 | 96.5 | 604 | 21 | 0 | 1 | 604 | 1 | 604 | 0.00E+00 | 1140.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47928.t1 | Q84MA5 | 67.2 | 592 | 184 | 1 | 11 | 602 | 9 | 590 | 1.4e-230 | 800.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47928.t1 | G7L9L7 | 96.5 | 604 | 21 | 0 | 1 | 604 | 1 | 604 | 0.0e+00 | 1140.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene47928 | MS.gene32277 | PPI |
| MS.gene47928 | MS.gene08148 | PPI |
| MS.gene47928 | MS.gene41790 | PPI |
| MS.gene47928 | MS.gene073450 | PPI |
| MS.gene38965 | MS.gene47928 | PPI |
| MS.gene47928 | MS.gene007812 | PPI |
| MS.gene032361 | MS.gene47928 | PPI |
| MS.gene47928 | MS.gene38964 | PPI |
| MS.gene47928 | MS.gene08144 | PPI |
| MS.gene47928 | MS.gene042491 | PPI |
| MS.gene47928 | MS.gene49831 | PPI |
| MS.gene47928 | MS.gene41795 | PPI |
| MS.gene47928 | MS.gene041367 | PPI |
| MS.gene47928 | MS.gene58674 | PPI |
| MS.gene47928 | MS.gene08137 | PPI |
| MS.gene47928 | MS.gene00402 | PPI |
| MS.gene47928 | MS.gene47297 | PPI |
| MS.gene007811 | MS.gene47928 | PPI |
| MS.gene47928 | MS.gene042480 | PPI |
| MS.gene41792 | MS.gene47928 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47928.t1 | MTR_8g089320 | 96.523 | 604 | 21 | 0 | 1 | 604 | 1 | 604 | 0.0 | 1189 |
| MS.gene47928.t1 | MTR_8g089360 | 75.261 | 574 | 138 | 3 | 21 | 594 | 26 | 595 | 0.0 | 880 |
| MS.gene47928.t1 | MTR_8g089360 | 75.261 | 574 | 138 | 3 | 21 | 594 | 9 | 578 | 0.0 | 880 |
| MS.gene47928.t1 | MTR_8g089340 | 91.685 | 457 | 37 | 1 | 149 | 604 | 1 | 457 | 0.0 | 810 |
| MS.gene47928.t1 | MTR_1g030660 | 63.276 | 580 | 206 | 2 | 28 | 601 | 23 | 601 | 0.0 | 760 |
| MS.gene47928.t1 | MTR_2g035430 | 56.559 | 587 | 255 | 0 | 1 | 587 | 1 | 587 | 0.0 | 707 |
| MS.gene47928.t1 | MTR_8g461380 | 50.000 | 568 | 278 | 2 | 19 | 586 | 26 | 587 | 0.0 | 577 |
| MS.gene47928.t1 | MTR_1g111740 | 40.986 | 588 | 324 | 4 | 28 | 603 | 6 | 582 | 6.38e-152 | 450 |
| MS.gene47928.t1 | MTR_4g099270 | 39.671 | 547 | 312 | 6 | 51 | 587 | 1 | 539 | 3.22e-126 | 383 |
| MS.gene47928.t1 | MTR_4g099270 | 44.385 | 374 | 204 | 2 | 35 | 404 | 6 | 379 | 2.43e-105 | 323 |
| MS.gene47928.t1 | MTR_4g099270 | 37.471 | 435 | 254 | 6 | 163 | 587 | 1 | 427 | 6.03e-89 | 283 |
| MS.gene47928.t1 | MTR_4g099270 | 43.709 | 302 | 166 | 2 | 35 | 332 | 6 | 307 | 3.09e-82 | 261 |
| MS.gene47928.t1 | MTR_8g089342 | 92.086 | 139 | 10 | 1 | 1 | 138 | 1 | 139 | 5.16e-81 | 251 |
| MS.gene47928.t1 | MTR_6g027630 | 35.000 | 420 | 263 | 5 | 35 | 446 | 7 | 424 | 3.46e-75 | 251 |
| MS.gene47928.t1 | MTR_6g027630 | 35.000 | 420 | 263 | 5 | 35 | 446 | 7 | 424 | 7.54e-75 | 251 |
| MS.gene47928.t1 | MTR_7g086510 | 36.829 | 391 | 240 | 3 | 63 | 446 | 29 | 419 | 8.40e-75 | 251 |
| MS.gene47928.t1 | MTR_6g027680 | 35.385 | 390 | 243 | 3 | 65 | 446 | 39 | 427 | 1.52e-71 | 241 |
| MS.gene47928.t1 | MTR_6g034535 | 43.657 | 268 | 136 | 5 | 328 | 586 | 49 | 310 | 9.68e-71 | 231 |
| MS.gene47928.t1 | MTR_6g034535 | 43.750 | 96 | 29 | 1 | 98 | 193 | 19 | 89 | 4.63e-15 | 77.0 |
| MS.gene47928.t1 | MTR_6g027660 | 32.401 | 429 | 277 | 4 | 25 | 446 | 3 | 425 | 9.82e-71 | 240 |
| MS.gene47928.t1 | MTR_6g027650 | 35.233 | 386 | 241 | 4 | 69 | 446 | 33 | 417 | 1.33e-70 | 239 |
| MS.gene47928.t1 | MTR_7g086610 | 35.770 | 383 | 237 | 3 | 72 | 446 | 32 | 413 | 1.37e-69 | 237 |
| MS.gene47928.t1 | MTR_7g007850 | 30.769 | 520 | 340 | 9 | 65 | 571 | 42 | 554 | 1.42e-67 | 230 |
| MS.gene47928.t1 | MTR_7g007850 | 28.909 | 550 | 341 | 9 | 65 | 571 | 42 | 584 | 4.43e-63 | 219 |
| MS.gene47928.t1 | MTR_7g007850 | 32.524 | 412 | 267 | 7 | 65 | 467 | 42 | 451 | 5.28e-60 | 208 |
| MS.gene47928.t1 | MTR_7g007850 | 32.524 | 412 | 267 | 7 | 65 | 467 | 42 | 451 | 1.03e-59 | 208 |
| MS.gene47928.t1 | MTR_6g027630 | 34.118 | 340 | 215 | 4 | 115 | 446 | 1 | 339 | 2.87e-55 | 196 |
| MS.gene47928.t1 | MTR_6g027670 | 32.278 | 158 | 107 | 0 | 289 | 446 | 1 | 158 | 2.47e-25 | 107 |
| MS.gene47928.t1 | MTR_2g064760 | 89.655 | 29 | 3 | 0 | 489 | 517 | 13 | 41 | 5.64e-12 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47928.t1 | AT4G21120 | 67.003 | 594 | 186 | 1 | 11 | 604 | 9 | 592 | 0.0 | 837 |
| MS.gene47928.t1 | AT2G34960 | 57.651 | 562 | 236 | 2 | 11 | 571 | 3 | 563 | 0.0 | 679 |
| MS.gene47928.t1 | AT4G21120 | 63.938 | 452 | 153 | 1 | 153 | 604 | 1 | 442 | 0.0 | 604 |
| MS.gene47928.t1 | AT1G17120 | 53.488 | 559 | 259 | 1 | 13 | 571 | 22 | 579 | 0.0 | 595 |
| MS.gene47928.t1 | AT3G10600 | 40.273 | 586 | 316 | 8 | 27 | 592 | 11 | 582 | 6.48e-145 | 432 |
| MS.gene47928.t1 | AT5G04770 | 40.034 | 582 | 317 | 7 | 30 | 592 | 15 | 583 | 7.96e-144 | 429 |
| MS.gene47928.t1 | AT5G04770 | 41.667 | 384 | 214 | 2 | 30 | 403 | 15 | 398 | 3.25e-106 | 327 |
| MS.gene47928.t1 | AT3G10600 | 38.222 | 450 | 244 | 8 | 163 | 592 | 1 | 436 | 2.81e-100 | 312 |
| MS.gene47928.t1 | AT5G04770 | 38.085 | 449 | 246 | 7 | 163 | 592 | 1 | 436 | 9.51e-93 | 292 |
| MS.gene47928.t1 | AT5G36940 | 35.417 | 384 | 241 | 3 | 70 | 446 | 27 | 410 | 1.29e-73 | 247 |
| MS.gene47928.t1 | AT3G03720 | 34.663 | 401 | 253 | 3 | 53 | 446 | 7 | 405 | 1.27e-72 | 244 |
| MS.gene47928.t1 | AT1G58030 | 33.766 | 385 | 248 | 3 | 69 | 446 | 37 | 421 | 1.82e-68 | 234 |
| MS.gene47928.t1 | AT1G05940 | 29.511 | 532 | 352 | 7 | 64 | 578 | 40 | 565 | 7.08e-67 | 228 |
| MS.gene47928.t1 | AT1G05940 | 30.242 | 496 | 323 | 7 | 64 | 542 | 40 | 529 | 6.70e-64 | 219 |
| MS.gene47928.t1 | AT1G05940 | 31.382 | 427 | 280 | 5 | 64 | 478 | 40 | 465 | 1.27e-61 | 213 |
| MS.gene47928.t1 | AT1G05940 | 27.703 | 444 | 300 | 5 | 151 | 578 | 9 | 447 | 8.33e-44 | 162 |
Find 159 sgRNAs with CRISPR-Local
Find 262 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATTGGAATTTCAGCTTAT+TGG | 0.122057 | 4.1:+11454223 | MS.gene47928:CDS |
| TCCACGACTTCACTCCTTTC+GGG | 0.194112 | 4.1:+11453584 | MS.gene47928:CDS |
| GTGTGTCTTGTGTTGATTAT+TGG | 0.202436 | 4.1:+11454195 | MS.gene47928:CDS |
| CTTGTATACTATGTGCTATT+AGG | 0.206726 | 4.1:+11454471 | MS.gene47928:CDS |
| GCTATCAACATATTCCTTCT+TGG | 0.222509 | 4.1:+11454396 | MS.gene47928:CDS |
| TTTGTTCCTCTGTGGTTTAT+AGG | 0.224891 | 4.1:+11454282 | MS.gene47928:CDS |
| AATTGGAATTTCAGCTTATT+GGG | 0.231227 | 4.1:+11454224 | MS.gene47928:CDS |
| GTTGCTTTCTTTACCGATCT+TGG | 0.269135 | 4.1:+11454048 | MS.gene47928:CDS |
| TTCGGCATCGGCGCCGTTAT+TGG | 0.280711 | 4.1:+11451194 | MS.gene47928:CDS |
| TTGTTCCTCTGTGGTTTATA+GGG | 0.287958 | 4.1:+11454283 | MS.gene47928:CDS |
| TGCTTACTTAAGAGTAGAAT+TGG | 0.292424 | 4.1:+11453237 | MS.gene47928:CDS |
| TTATAGGGACAGGTGCTCTT+TGG | 0.296623 | 4.1:+11454298 | MS.gene47928:CDS |
| TGCAGAGCTGGTGGAGATTA+AGG | 0.299520 | 4.1:+11451118 | MS.gene47928:CDS |
| CAAGGGCTGTGATGGCTACT+AGG | 0.303231 | 4.1:-11453447 | None:intergenic |
| TTGTATACTATGTGCTATTA+GGG | 0.303775 | 4.1:+11454472 | MS.gene47928:CDS |
| TTCACTCCTTTCGGGCTTCA+TGG | 0.308522 | 4.1:+11453592 | MS.gene47928:CDS |
| GGGGAGTACCTTTGGTTCCT+TGG | 0.311642 | 4.1:+11454355 | MS.gene47928:CDS |
| TTCCACGACTTCACTCCTTT+CGG | 0.314152 | 4.1:+11453583 | MS.gene47928:CDS |
| ATACTCAAGGAGGATGTTTC+CGG | 0.316964 | 4.1:-11453284 | None:intergenic |
| GGGCATATCTGCTTTGTTAT+CGG | 0.324019 | 4.1:+11451295 | MS.gene47928:CDS |
| TGTATTGTCGTTTGTCATCT+CGG | 0.339399 | 4.1:+11451274 | MS.gene47928:CDS |
| GACATTCCAATTGGTCTAGT+TGG | 0.355410 | 4.1:+11453706 | MS.gene47928:CDS |
| TCAAAAGAACGACTTCTTCC+CGG | 0.355424 | 4.1:+11451001 | MS.gene47928:CDS |
| CACAATATGAACCCTGACTA+TGG | 0.355787 | 4.1:+11453397 | MS.gene47928:CDS |
| CGTATATAAGGTTTGCGGTT+TGG | 0.357696 | 4.1:+11454436 | MS.gene47928:CDS |
| GCTGTGGAAATTCCGGTTGC+AGG | 0.357996 | 4.1:+11451338 | MS.gene47928:CDS |
| TCTGGAATATTTGTGCTTAC+CGG | 0.360075 | 4.1:+11451218 | MS.gene47928:CDS |
| GCAATTGAACAAGGTGGAAC+AGG | 0.361594 | 4.1:+11454572 | MS.gene47928:CDS |
| TTGATTATTGGTTCTTCAAT+TGG | 0.371036 | 4.1:+11454207 | MS.gene47928:CDS |
| TTGCTTTCTTTACCGATCTT+GGG | 0.377778 | 4.1:+11454049 | MS.gene47928:CDS |
| ACTAGGGCTGCAATGGCAAT+AGG | 0.381476 | 4.1:-11453430 | None:intergenic |
| TAAGTTATGGGGAGTACCTT+TGG | 0.384691 | 4.1:+11454347 | MS.gene47928:CDS |
| TAGTGCTGTTGGAATGGATT+GGG | 0.389974 | 4.1:+11453834 | MS.gene47928:CDS |
| GGGTCAAGATGGCCATAGTC+AGG | 0.395099 | 4.1:-11453409 | None:intergenic |
| TCCTTTCGGGCTTCATGGTA+TGG | 0.395161 | 4.1:+11453597 | MS.gene47928:CDS |
| GGAGGAGTCGTTTAAGAGTT+GGG | 0.398486 | 4.1:+11451022 | MS.gene47928:CDS |
| GGCAAAGAAGCCTAAGTTAT+GGG | 0.403530 | 4.1:+11454335 | MS.gene47928:CDS |
| ATTGAGATTGTAGCATTCAT+AGG | 0.404896 | 4.1:-11454006 | None:intergenic |
| TCAAGTGAGGTAACTACAAA+AGG | 0.408616 | 4.1:+11454153 | MS.gene47928:CDS |
| AACTTAGGCTTCTTTGCCAT+TGG | 0.410038 | 4.1:-11454330 | None:intergenic |
| ATCGGCGCCGTTATTGGTTC+TGG | 0.410639 | 4.1:+11451200 | MS.gene47928:CDS |
| CTGTCATGGAAACACCTTAC+CGG | 0.410920 | 4.1:+11451060 | MS.gene47928:CDS |
| AGAGTTTGCTGTGGAAATTC+CGG | 0.413761 | 4.1:+11451331 | MS.gene47928:CDS |
| TGGCATTGGCACTTCTAGTA+AGG | 0.430198 | 4.1:+11454121 | MS.gene47928:CDS |
| GGCTAGGCAGGAAGCAGGTC+CGG | 0.432589 | 4.1:+11451247 | MS.gene47928:CDS |
| GATGTTTCCGGCAGCTATAA+AGG | 0.433876 | 4.1:-11453272 | None:intergenic |
| ACTATTATACGAAAATCATC+AGG | 0.434415 | 4.1:-11453373 | None:intergenic |
| GCTCTTGTTGATGAAAGAAC+AGG | 0.435974 | 4.1:+11453979 | MS.gene47928:CDS |
| ATAAGGTTTGCGGTTTGGAC+AGG | 0.438702 | 4.1:+11454441 | MS.gene47928:CDS |
| ATTGAACCAACTAGACCAAT+TGG | 0.438801 | 4.1:-11453712 | None:intergenic |
| ACATACTAGTGGTTCTGATC+AGG | 0.442761 | 4.1:+11454539 | MS.gene47928:CDS |
| TTAGTGCTGTTGGAATGGAT+TGG | 0.443178 | 4.1:+11453833 | MS.gene47928:CDS |
| GTATTGTCGTTTGTCATCTC+GGG | 0.449106 | 4.1:+11451275 | MS.gene47928:CDS |
| CCTCTGTGGTTTATAGGGAC+AGG | 0.451148 | 4.1:+11454288 | MS.gene47928:CDS |
| CGGAGGAGTCGTTTAAGAGT+TGG | 0.471701 | 4.1:+11451021 | MS.gene47928:CDS |
| TACCGGACTTGAGGCTAGGC+AGG | 0.477948 | 4.1:+11451235 | MS.gene47928:CDS |
| GCACTAAAAGCAACTGAGAA+AGG | 0.478246 | 4.1:-11453817 | None:intergenic |
| TGTGGCTATGTAGTTGAAGA+TGG | 0.479563 | 4.1:-11453494 | None:intergenic |
| AACAGTGAGAATGGATGGAT+TGG | 0.479583 | 4.1:+11454249 | MS.gene47928:CDS |
| GTTGAAGATGGAAGAGCCTT+TGG | 0.481809 | 4.1:-11453482 | None:intergenic |
| GCTTACTTAAGAGTAGAATT+GGG | 0.482784 | 4.1:+11453238 | MS.gene47928:CDS |
| CAACTCTTAAACGACTCCTC+CGG | 0.483055 | 4.1:-11451020 | None:intergenic |
| GTTCTTAGTTTCTTCAGCCA+TGG | 0.485412 | 4.1:-11453674 | None:intergenic |
| AACTCTTAAACGACTCCTCC+GGG | 0.489247 | 4.1:-11451019 | None:intergenic |
| TGGCAAAGAAGCCTAAGTTA+TGG | 0.489518 | 4.1:+11454334 | MS.gene47928:CDS |
| GACTTGATGTGGTTCGGCAT+CGG | 0.491036 | 4.1:+11451182 | MS.gene47928:CDS |
| TGGTGGGACTTGATGTGGTT+CGG | 0.493050 | 4.1:+11451176 | MS.gene47928:CDS |
| ACGCCGCGGTAGCTCGATCA+TGG | 0.494424 | 4.1:+11453317 | MS.gene47928:CDS |
| AAAATCGTATATAAGGTTTG+CGG | 0.499007 | 4.1:+11454431 | MS.gene47928:CDS |
| GACACACAATGAGATTTACT+TGG | 0.500876 | 4.1:-11454179 | None:intergenic |
| TATTGGGCTAACAGTGAGAA+TGG | 0.501880 | 4.1:+11454240 | MS.gene47928:CDS |
| ATCCTCCTTGAGTATATCAT+AGG | 0.504563 | 4.1:+11453292 | MS.gene47928:CDS |
| CCAATTGGAATGTCTCTACC+AGG | 0.509969 | 4.1:-11453697 | None:intergenic |
| CCTGGTAGAGACATTCCAAT+TGG | 0.511803 | 4.1:+11453697 | MS.gene47928:CDS |
| GGAAACACCTTACCGGTTGA+AGG | 0.513323 | 4.1:+11451067 | MS.gene47928:CDS |
| GGAGAGGTGGTCGATGGCGG+CGG | 0.515481 | 4.1:+11450954 | MS.gene47928:CDS |
| AAGGGCTGTGATGGCTACTA+GGG | 0.519818 | 4.1:-11453446 | None:intergenic |
| TTTGTTGCCTTTATAGCTGC+CGG | 0.521495 | 4.1:+11453265 | MS.gene47928:CDS |
| CTAGGGCTGCAATGGCAATA+GGG | 0.522514 | 4.1:-11453429 | None:intergenic |
| GCAACAAACGATCCTTCAAC+CGG | 0.523498 | 4.1:-11451079 | None:intergenic |
| AAATATTCCAGAACCAATAA+CGG | 0.523587 | 4.1:-11451207 | None:intergenic |
| ATCTAGTGATCATGCAGAGC+TGG | 0.523633 | 4.1:+11451106 | MS.gene47928:CDS |
| CAAGTGAGGTAACTACAAAA+GGG | 0.524334 | 4.1:+11454154 | MS.gene47928:CDS |
| GGGTTTGGCTTTGATTAGAC+CGG | 0.527710 | 4.1:-11453554 | None:intergenic |
| TTTAAGAGTTGGGGAAACTA+CGG | 0.530921 | 4.1:+11451032 | MS.gene47928:CDS |
| AGATGAAGAAGACGTTGAAC+TGG | 0.533887 | 4.1:+11451156 | MS.gene47928:CDS |
| TTGATAGCAATAGATAAAGA+AGG | 0.534558 | 4.1:-11454381 | None:intergenic |
| CTTGCAGTTTACAGCACCAA+AGG | 0.534562 | 4.1:+11453466 | MS.gene47928:CDS |
| CTAATAGCACATAGTATACA+AGG | 0.543713 | 4.1:-11454470 | None:intergenic |
| CTTTGATGCAGTTTCAACCA+TGG | 0.552516 | 4.1:+11453657 | MS.gene47928:CDS |
| CTTGAGGCTAGGCAGGAAGC+AGG | 0.555643 | 4.1:+11451242 | MS.gene47928:CDS |
| TGCTTACCGGACTTGAGGCT+AGG | 0.556310 | 4.1:+11451231 | MS.gene47928:CDS |
| GGGCTAACAGTGAGAATGGA+TGG | 0.558502 | 4.1:+11454244 | MS.gene47928:CDS |
| ATAGATAAAGAAGGTAGCCA+AGG | 0.559440 | 4.1:-11454372 | None:intergenic |
| AAACGATCCTTCAACCGGTA+AGG | 0.560163 | 4.1:-11451074 | None:intergenic |
| TAAGGTTTGCGGTTTGGACA+GGG | 0.562484 | 4.1:+11454442 | MS.gene47928:CDS |
| CAATGGCAATAGGGTCAAGA+TGG | 0.562907 | 4.1:-11453420 | None:intergenic |
| GTAAACTGCAAGGGCTGTGA+TGG | 0.563586 | 4.1:-11453455 | None:intergenic |
| CATAGTCAGGGTTCATATTG+TGG | 0.563878 | 4.1:-11453396 | None:intergenic |
| GTTGGAGAGGTGGTCGATGG+CGG | 0.564645 | 4.1:+11450951 | MS.gene47928:CDS |
| GAAAACAGGAACATGGCAGT+TGG | 0.566836 | 4.1:+11450933 | None:intergenic |
| CTTTGGTGCTGTAAACTGCA+AGG | 0.567605 | 4.1:-11453465 | None:intergenic |
| GCAGTTGGAGAGGTGGTCGA+TGG | 0.568853 | 4.1:+11450948 | MS.gene47928:CDS |
| TAGTGATCATGCAGAGCTGG+TGG | 0.569903 | 4.1:+11451109 | MS.gene47928:CDS |
| GTTTCACTAGGTGCTTTGAA+AGG | 0.570706 | 4.1:+11453868 | MS.gene47928:CDS |
| ACACCATCTTTGTTCCTCTG+TGG | 0.571390 | 4.1:+11454274 | MS.gene47928:CDS |
| ATTTGTGCTTACCGGACTTG+AGG | 0.572133 | 4.1:+11451226 | MS.gene47928:CDS |
| TGAAGAAGACGTTGAACTGG+TGG | 0.575728 | 4.1:+11451159 | MS.gene47928:CDS |
| CAGGAACATGGCAGTTGGAG+AGG | 0.576698 | 4.1:+11450938 | None:intergenic |
| AACATAAGCAAAGAAAAGTA+CGG | 0.578928 | 4.1:-11453632 | None:intergenic |
| GCTAAGTACATTGTTTCACT+AGG | 0.579305 | 4.1:+11453856 | MS.gene47928:CDS |
| GATCAGATTAAACATACTAG+TGG | 0.585592 | 4.1:+11454528 | MS.gene47928:CDS |
| AAGGAGATATTATTCAAGTG+AGG | 0.585702 | 4.1:+11454140 | MS.gene47928:CDS |
| GATGGCTACTAGGGCTGCAA+TGG | 0.585884 | 4.1:-11453437 | None:intergenic |
| TGAACTGGTGGGACTTGATG+TGG | 0.588455 | 4.1:+11451171 | MS.gene47928:CDS |
| TTCCTGCCTAGCCTCAAGTC+CGG | 0.590625 | 4.1:-11451237 | None:intergenic |
| ACCATACCATGAAGCCCGAA+AGG | 0.594838 | 4.1:-11453598 | None:intergenic |
| AAACTACGGAAAATCTGTCA+TGG | 0.596565 | 4.1:+11451046 | MS.gene47928:CDS |
| GCCCGAAAGGAGTGAAGTCG+TGG | 0.598740 | 4.1:-11453585 | None:intergenic |
| GAAGGTAGCCAAGGAACCAA+AGG | 0.599611 | 4.1:-11454363 | None:intergenic |
| GTACTCACATGATGCCACCT+TGG | 0.601374 | 4.1:+11453953 | MS.gene47928:CDS |
| ATTATCTTCATAGTAATCGC+CGG | 0.602298 | 4.1:+11453535 | MS.gene47928:CDS |
| GAGGAGTCGTTTAAGAGTTG+GGG | 0.604687 | 4.1:+11451023 | MS.gene47928:CDS |
| TACTAGTGGTTCTGATCAGG+AGG | 0.607435 | 4.1:+11454542 | MS.gene47928:CDS |
| GAACATGGCAGTTGGAGAGG+TGG | 0.607953 | 4.1:+11450941 | None:intergenic |
| GGTTGAGAAGCAATTGAACA+AGG | 0.608119 | 4.1:+11454563 | MS.gene47928:CDS |
| ACAAAGTAGCAATCGACAAG+AGG | 0.610155 | 4.1:-11454083 | None:intergenic |
| AAACCACAGAGGAACAAAGA+TGG | 0.613035 | 4.1:-11454277 | None:intergenic |
| GTGGAGATTAAGGCTAGGAG+TGG | 0.614966 | 4.1:+11451128 | MS.gene47928:CDS |
| TTTGGTGCTGTAAACTGCAA+GGG | 0.618827 | 4.1:-11453464 | None:intergenic |
| GGTCAAGATGGCCATAGTCA+GGG | 0.621031 | 4.1:-11453408 | None:intergenic |
| TTGTTATACAGAGTTTGCTG+TGG | 0.625474 | 4.1:+11451322 | MS.gene47928:CDS |
| AGCTGGTGGAGATTAAGGCT+AGG | 0.626254 | 4.1:+11451123 | MS.gene47928:CDS |
| GGCGGCGGAGTACGTAGGAG+AGG | 0.626720 | 4.1:+11450969 | MS.gene47928:CDS |
| CAATTGAACAAGGTGGAACA+GGG | 0.630668 | 4.1:+11454573 | MS.gene47928:CDS |
| CGTTGCCTATGATATACTCA+AGG | 0.633243 | 4.1:-11453297 | None:intergenic |
| GTTCGATAGAATCCCAAGAT+CGG | 0.634285 | 4.1:-11454061 | None:intergenic |
| ACAAACGACAATACAACCGC+CGG | 0.635158 | 4.1:-11451266 | None:intergenic |
| CATAGCCACACTCTTACACA+TGG | 0.637053 | 4.1:+11453507 | MS.gene47928:CDS |
| TAGGCAGGAAGCAGGTCCGG+CGG | 0.638522 | 4.1:+11451250 | MS.gene47928:CDS |
| TGCTTTGAAAGGAATGACAA+CGG | 0.638848 | 4.1:+11453879 | MS.gene47928:CDS |
| GCAAAGAAGCCTAAGTTATG+GGG | 0.643860 | 4.1:+11454336 | MS.gene47928:CDS |
| AAAGGTACTCCCCATAACTT+AGG | 0.644859 | 4.1:-11454345 | None:intergenic |
| CTATTATACGAAAATCATCA+GGG | 0.647038 | 4.1:-11453372 | None:intergenic |
| TGGAGATTAAGGCTAGGAGT+GGG | 0.659365 | 4.1:+11451129 | MS.gene47928:CDS |
| GAAGAAGACGTTGAACTGGT+GGG | 0.664861 | 4.1:+11451160 | MS.gene47928:CDS |
| GCTGAAGAAACTAAGAACCC+TGG | 0.666018 | 4.1:+11453679 | MS.gene47928:CDS |
| GGTCCATGATCGAGCTACCG+CGG | 0.681679 | 4.1:-11453320 | None:intergenic |
| TGAGAAGCAATTGAACAAGG+TGG | 0.692961 | 4.1:+11454566 | MS.gene47928:CDS |
| CAATTGGAATGTCTCTACCA+GGG | 0.700717 | 4.1:-11453696 | None:intergenic |
| GCAGAGGGTGGCGAAATACG+AGG | 0.702759 | 4.1:-11453341 | None:intergenic |
| TCGATGGCGGCGGAGTACGT+AGG | 0.703593 | 4.1:+11450964 | MS.gene47928:CDS |
| TGCCTATGATATACTCAAGG+AGG | 0.704194 | 4.1:-11453294 | None:intergenic |
| GACAGCCATGTGTAAGAGTG+TGG | 0.708211 | 4.1:-11453512 | None:intergenic |
| TCAACAAGAGCAAACCAAGG+TGG | 0.728106 | 4.1:-11453967 | None:intergenic |
| AAAGAACGACTTCTTCCCGG+AGG | 0.732358 | 4.1:+11451004 | MS.gene47928:CDS |
| TCATCAACAAGAGCAAACCA+AGG | 0.735762 | 4.1:-11453970 | None:intergenic |
| GTATATCATAGGCAACGCCG+CGG | 0.783643 | 4.1:+11453303 | MS.gene47928:CDS |
| CCTGTCCCTATAAACCACAG+AGG | 0.799479 | 4.1:-11454288 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATATAAATATAAATTAA+AGG | - | chr4.1:11452500-11452519 | None:intergenic | 0.0% |
| !!! | ATAATTTTATTTTTTTATTA+TGG | + | chr4.1:11452406-11452425 | MS.gene47928:intron | 0.0% |
| !! | ATATAAAGATTATCAATAAA+AGG | - | chr4.1:11452715-11452734 | None:intergenic | 10.0% |
| !!! | ATAATTTTTTGTTTACTTTT+AGG | - | chr4.1:11451491-11451510 | None:intergenic | 10.0% |
| !!! | ATTTGCATTAAATTTAATTT+AGG | + | chr4.1:11451410-11451429 | MS.gene47928:intron | 10.0% |
| !!! | CAAGTTTTTTTTTTTAATAT+TGG | + | chr4.1:11453169-11453188 | MS.gene47928:intron | 10.0% |
| !!! | TTATATTTTGAAGAAAAATA+AGG | + | chr4.1:11452217-11452236 | MS.gene47928:intron | 10.0% |
| !!! | TTTGCATTAAATTTAATTTA+GGG | + | chr4.1:11451411-11451430 | MS.gene47928:intron | 10.0% |
| !! | AAAAAAATTGTATTGAATGA+TGG | - | chr4.1:11452175-11452194 | None:intergenic | 15.0% |
| !! | ATATTGTGGAATTATAAATT+TGG | - | chr4.1:11451815-11451834 | None:intergenic | 15.0% |
| !! | ATTAAGACAATAAAATGTTA+AGG | + | chr4.1:11452867-11452886 | MS.gene47928:intron | 15.0% |
| !! | TATTGTGGAATTATAAATTT+GGG | - | chr4.1:11451814-11451833 | None:intergenic | 15.0% |
| !! | TGAAATTATTAAGAATTTGT+TGG | - | chr4.1:11452126-11452145 | None:intergenic | 15.0% |
| !! | TTGATAAAAAATCGTATATA+AGG | + | chr4.1:11454424-11454443 | MS.gene47928:CDS | 15.0% |
| !! | TTTAAGTCTATAAAAAAATG+TGG | + | chr4.1:11451969-11451988 | MS.gene47928:intron | 15.0% |
| !!! | AACAATATTGACAATATTTT+AGG | + | chr4.1:11451609-11451628 | MS.gene47928:intron | 15.0% |
| !!! | TATATTCTTTTTGTGATTTA+GGG | + | chr4.1:11453005-11453024 | MS.gene47928:intron | 15.0% |
| !! | AAAAGTTGAATTCTCAATTA+TGG | - | chr4.1:11451586-11451605 | None:intergenic | 20.0% |
| !! | AAAGATTATCAATAAAAGGT+TGG | - | chr4.1:11452711-11452730 | None:intergenic | 20.0% |
| !! | AAAGTTGAATTCTCAATTAT+GGG | - | chr4.1:11451585-11451604 | None:intergenic | 20.0% |
| !! | AAATTAATTAATATGCATCG+AGG | - | chr4.1:11451935-11451954 | None:intergenic | 20.0% |
| !! | ACAACAAAGAAATAATAGAT+AGG | + | chr4.1:11451749-11451768 | MS.gene47928:intron | 20.0% |
| !! | AGAGTTTGAAAAAAAAAGAA+AGG | - | chr4.1:11452289-11452308 | None:intergenic | 20.0% |
| !! | ATACACTATTTATTCCAATA+TGG | - | chr4.1:11452476-11452495 | None:intergenic | 20.0% |
| !! | ATCTTATGGTAGTAAAATAT+CGG | - | chr4.1:11452371-11452390 | None:intergenic | 20.0% |
| !! | TAATTCCACAATATTAAAAG+TGG | + | chr4.1:11451821-11451840 | MS.gene47928:intron | 20.0% |
| !! | TGTGTATTCATGTAAATTAA+AGG | - | chr4.1:11452440-11452459 | None:intergenic | 20.0% |
| !!! | AACTTGATGTTTTCTTTTAA+GGG | + | chr4.1:11451850-11451869 | MS.gene47928:intron | 20.0% |
| !!! | GTATATTCTTTTTGTGATTT+AGG | + | chr4.1:11453004-11453023 | MS.gene47928:intron | 20.0% |
| !!! | TAACTTGATGTTTTCTTTTA+AGG | + | chr4.1:11451849-11451868 | MS.gene47928:intron | 20.0% |
| ! | AAAAAAAAGAAAGGAGTAAG+TGG | - | chr4.1:11452280-11452299 | None:intergenic | 25.0% |
| ! | AAAATCGTATATAAGGTTTG+CGG | + | chr4.1:11454431-11454450 | MS.gene47928:CDS | 25.0% |
| ! | AAACGACAACTAAAAAAGAA+CGG | + | chr4.1:11452969-11452988 | MS.gene47928:intron | 25.0% |
| ! | AAATATTCCAGAACCAATAA+CGG | - | chr4.1:11451210-11451229 | None:intergenic | 25.0% |
| ! | AACATAAGCAAAGAAAAGTA+CGG | - | chr4.1:11453635-11453654 | None:intergenic | 25.0% |
| ! | AATATAAAACCCTCCTTATT+TGG | - | chr4.1:11452204-11452223 | None:intergenic | 25.0% |
| ! | AATTGGAATTTCAGCTTATT+GGG | + | chr4.1:11454224-11454243 | MS.gene47928:CDS | 25.0% |
| ! | ACACTCAAAAGTTTATAAGT+TGG | - | chr4.1:11451526-11451545 | None:intergenic | 25.0% |
| ! | ACTATTATACGAAAATCATC+AGG | - | chr4.1:11453376-11453395 | None:intergenic | 25.0% |
| ! | AGAATCTTAGAGAATTCAAA+AGG | - | chr4.1:11451899-11451918 | None:intergenic | 25.0% |
| ! | CAAATAAAATTGAACTCTTG+CGG | + | chr4.1:11451548-11451567 | MS.gene47928:intron | 25.0% |
| ! | CTAAACATTAGTGAATCTTA+TGG | - | chr4.1:11452385-11452404 | None:intergenic | 25.0% |
| ! | CTATTATACGAAAATCATCA+GGG | - | chr4.1:11453375-11453394 | None:intergenic | 25.0% |
| ! | TATAAATTTGGGTGCTTTAT+TGG | - | chr4.1:11451803-11451822 | None:intergenic | 25.0% |
| !! | ATATAAAACCCTCCTTATTT+GGG | - | chr4.1:11452203-11452222 | None:intergenic | 25.0% |
| !! | ATTGTATTGAATGATGGTTT+TGG | - | chr4.1:11452169-11452188 | None:intergenic | 25.0% |
| !! | TGACATTTTCATGATTGTTT+AGG | - | chr4.1:11453127-11453146 | None:intergenic | 25.0% |
| !! | TTGATAGCAATAGATAAAGA+AGG | - | chr4.1:11454384-11454403 | None:intergenic | 25.0% |
| !! | TTGTATACTATGTGCTATTA+GGG | + | chr4.1:11454472-11454491 | MS.gene47928:CDS | 25.0% |
| !! | TTGTATTGAATGATGGTTTT+GGG | - | chr4.1:11452168-11452187 | None:intergenic | 25.0% |
| !! | TTTGTTTATCTTTTCACTTG+TGG | + | chr4.1:11454101-11454120 | MS.gene47928:CDS | 25.0% |
| !! | TTTTATCAATAGATCCAAGA+AGG | - | chr4.1:11454413-11454432 | None:intergenic | 25.0% |
| !!! | AATAGCCACTTTTAATATTG+TGG | - | chr4.1:11451829-11451848 | None:intergenic | 25.0% |
| !!! | GCTTTATTGGTTTTAACTTT+GGG | - | chr4.1:11451790-11451809 | None:intergenic | 25.0% |
| !!! | TGCTTTATTGGTTTTAACTT+TGG | - | chr4.1:11451791-11451810 | None:intergenic | 25.0% |
| !!! | TTGATTATTGGTTCTTCAAT+TGG | + | chr4.1:11454207-11454226 | MS.gene47928:CDS | 25.0% |
| !!! | TTTTTTTAGTTCCCCAAATA+AGG | + | chr4.1:11452188-11452207 | MS.gene47928:intron | 25.0% |
| AACGTAATTGTTATAGCACA+AGG | + | chr4.1:11453097-11453116 | MS.gene47928:intron | 30.0% | |
| AAGGAGATATTATTCAAGTG+AGG | + | chr4.1:11454140-11454159 | MS.gene47928:CDS | 30.0% | |
| AATTGTATCCATTCTACAAG+AGG | - | chr4.1:11452621-11452640 | None:intergenic | 30.0% | |
| ACTCTAGGTTGTTGATATAA+TGG | + | chr4.1:11451462-11451481 | MS.gene47928:intron | 30.0% | |
| ATGGATACAATTACTCGAAA+AGG | + | chr4.1:11452629-11452648 | MS.gene47928:intron | 30.0% | |
| ATTATCTTCATAGTAATCGC+CGG | + | chr4.1:11453535-11453554 | MS.gene47928:CDS | 30.0% | |
| ATTGAGATTGTAGCATTCAT+AGG | - | chr4.1:11454009-11454028 | None:intergenic | 30.0% | |
| CAATTGGAATTTCAGCTTAT+TGG | + | chr4.1:11454223-11454242 | MS.gene47928:CDS | 30.0% | |
| CTAATAGCACATAGTATACA+AGG | - | chr4.1:11454473-11454492 | None:intergenic | 30.0% | |
| CTCACAAAACAAATAGACTA+AGG | - | chr4.1:11452345-11452364 | None:intergenic | 30.0% | |
| GATCAGATTAAACATACTAG+TGG | + | chr4.1:11454528-11454547 | MS.gene47928:CDS | 30.0% | |
| GCTTACTTAAGAGTAGAATT+GGG | + | chr4.1:11453238-11453257 | MS.gene47928:CDS | 30.0% | |
| TAAGTGGTACTCTACTAAAA+AGG | - | chr4.1:11452686-11452705 | None:intergenic | 30.0% | |
| TATCAACAACCTAGAGTAAT+CGG | - | chr4.1:11451459-11451478 | None:intergenic | 30.0% | |
| TGCTTACTTAAGAGTAGAAT+TGG | + | chr4.1:11453237-11453256 | MS.gene47928:CDS | 30.0% | |
| ! | CTTGTATACTATGTGCTATT+AGG | + | chr4.1:11454471-11454490 | MS.gene47928:CDS | 30.0% |
| ! | GTACTTTTCTTTGCTTATGT+TGG | + | chr4.1:11453634-11453653 | MS.gene47928:CDS | 30.0% |
| ! | GTTTTTCCCTCTTATATTTC+AGG | + | chr4.1:11453205-11453224 | MS.gene47928:intron | 30.0% |
| ! | TATAAAACCCTCCTTATTTG+GGG | - | chr4.1:11452202-11452221 | None:intergenic | 30.0% |
| ! | TTTAACTTTGGGTGCTTTAT+TGG | - | chr4.1:11451779-11451798 | None:intergenic | 30.0% |
| !! | AAACTTTTACCGATTACTCT+AGG | + | chr4.1:11451447-11451466 | MS.gene47928:intron | 30.0% |
| !! | TGTATTGAATGATGGTTTTG+GGG | - | chr4.1:11452167-11452186 | None:intergenic | 30.0% |
| AAACTACGGAAAATCTGTCA+TGG | + | chr4.1:11451046-11451065 | MS.gene47928:CDS | 35.0% | |
| AACAATATAACTGCTCGTCT+TGG | + | chr4.1:11452569-11452588 | MS.gene47928:intron | 35.0% | |
| AAGAAATAGAGGACATTAGG+AGG | - | chr4.1:11452257-11452276 | None:intergenic | 35.0% | |
| ATAGATAAAGAAGGTAGCCA+AGG | - | chr4.1:11454375-11454394 | None:intergenic | 35.0% | |
| ATCCTCCTTGAGTATATCAT+AGG | + | chr4.1:11453292-11453311 | MS.gene47928:CDS | 35.0% | |
| ATTGAACCAACTAGACCAAT+TGG | - | chr4.1:11453715-11453734 | None:intergenic | 35.0% | |
| CAAGTGAGGTAACTACAAAA+GGG | + | chr4.1:11454154-11454173 | MS.gene47928:CDS | 35.0% | |
| GACACACAATGAGATTTACT+TGG | - | chr4.1:11454182-11454201 | None:intergenic | 35.0% | |
| GATACAATTACTCGAAAAGG+TGG | + | chr4.1:11452632-11452651 | MS.gene47928:intron | 35.0% | |
| GCTAAGTACATTGTTTCACT+AGG | + | chr4.1:11453856-11453875 | MS.gene47928:CDS | 35.0% | |
| GCTATCAACATATTCCTTCT+TGG | + | chr4.1:11454396-11454415 | MS.gene47928:CDS | 35.0% | |
| GGTACTCTACTAAAAAGGAT+TGG | - | chr4.1:11452681-11452700 | None:intergenic | 35.0% | |
| TCAAGTGAGGTAACTACAAA+AGG | + | chr4.1:11454153-11454172 | MS.gene47928:CDS | 35.0% | |
| TGGAAGAAATAGAGGACATT+AGG | - | chr4.1:11452260-11452279 | None:intergenic | 35.0% | |
| TTGCTTTCTTTACCGATCTT+GGG | + | chr4.1:11454049-11454068 | MS.gene47928:CDS | 35.0% | |
| TTGTTCCTCTGTGGTTTATA+GGG | + | chr4.1:11454283-11454302 | MS.gene47928:CDS | 35.0% | |
| TTTAAGAGTTGGGGAAACTA+CGG | + | chr4.1:11451032-11451051 | MS.gene47928:CDS | 35.0% | |
| TTTCCCTCTTATATTTCAGG+TGG | + | chr4.1:11453208-11453227 | MS.gene47928:intron | 35.0% | |
| TTTGTTCCTCTGTGGTTTAT+AGG | + | chr4.1:11454282-11454301 | MS.gene47928:CDS | 35.0% | |
| ! | TATCTTTTCACTTGTGGCAT+TGG | + | chr4.1:11454107-11454126 | MS.gene47928:CDS | 35.0% |
| ! | TCTGGAATATTTGTGCTTAC+CGG | + | chr4.1:11451218-11451237 | MS.gene47928:CDS | 35.0% |
| ! | TGTATTGTCGTTTGTCATCT+CGG | + | chr4.1:11451274-11451293 | MS.gene47928:CDS | 35.0% |
| ! | TTCCCTCTTATATTTCAGGT+GGG | + | chr4.1:11453209-11453228 | MS.gene47928:intron | 35.0% |
| ! | TTTAGTTCCCCAAATAAGGA+GGG | + | chr4.1:11452192-11452211 | MS.gene47928:intron | 35.0% |
| !! | CAATAAAAGGTTGGCTTAAG+TGG | - | chr4.1:11452702-11452721 | None:intergenic | 35.0% |
| !! | GGCTTATAGCTCTAATACTT+CGG | - | chr4.1:11452660-11452679 | None:intergenic | 35.0% |
| !! | GTGTGTCTTGTGTTGATTAT+TGG | + | chr4.1:11454195-11454214 | MS.gene47928:CDS | 35.0% |
| !! | TGCTTTGAAAGGAATGACAA+CGG | + | chr4.1:11453879-11453898 | MS.gene47928:CDS | 35.0% |
| !! | TTGTTATACAGAGTTTGCTG+TGG | + | chr4.1:11451322-11451341 | MS.gene47928:CDS | 35.0% |
| !! | TTTTGTTTGCGAGTTTGAAG+TGG | - | chr4.1:11452322-11452341 | None:intergenic | 35.0% |
| !!! | GTATTGAATGATGGTTTTGG+GGG | - | chr4.1:11452166-11452185 | None:intergenic | 35.0% |
| !!! | TATTGAATGATGGTTTTGGG+GGG | - | chr4.1:11452165-11452184 | None:intergenic | 35.0% |
| !!! | TCTTTGGCTTTTTGTTCCAA+TGG | + | chr4.1:11454314-11454333 | MS.gene47928:CDS | 35.0% |
| !!! | TTTTAGTTCCCCAAATAAGG+AGG | + | chr4.1:11452191-11452210 | MS.gene47928:intron | 35.0% |
| AAACCACAGAGGAACAAAGA+TGG | - | chr4.1:11454280-11454299 | None:intergenic | 40.0% | |
| AAATAGAGGACATTAGGAGG+AGG | - | chr4.1:11452254-11452273 | None:intergenic | 40.0% | |
| AACAGTGAGAATGGATGGAT+TGG | + | chr4.1:11454249-11454268 | MS.gene47928:CDS | 40.0% | |
| AACTTAGGCTTCTTTGCCAT+TGG | - | chr4.1:11454333-11454352 | None:intergenic | 40.0% | |
| AATAGAGGACATTAGGAGGA+GGG | - | chr4.1:11452253-11452272 | None:intergenic | 40.0% | |
| ACAAAGTAGCAATCGACAAG+AGG | - | chr4.1:11454086-11454105 | None:intergenic | 40.0% | |
| ACAATCCACCTCTTGTAGAA+TGG | + | chr4.1:11452610-11452629 | MS.gene47928:intron | 40.0% | |
| AGATGAAGAAGACGTTGAAC+TGG | + | chr4.1:11451156-11451175 | MS.gene47928:CDS | 40.0% | |
| ATACTCAAGGAGGATGTTTC+CGG | - | chr4.1:11453287-11453306 | None:intergenic | 40.0% | |
| ATGACACACTTCAGCCATAT+TGG | + | chr4.1:11452459-11452478 | MS.gene47928:intron | 40.0% | |
| CAATTGAACAAGGTGGAACA+GGG | + | chr4.1:11454573-11454592 | MS.gene47928:CDS | 40.0% | |
| CAATTGGAATGTCTCTACCA+GGG | - | chr4.1:11453699-11453718 | None:intergenic | 40.0% | |
| CACAATATGAACCCTGACTA+TGG | + | chr4.1:11453397-11453416 | MS.gene47928:CDS | 40.0% | |
| CATAGTCAGGGTTCATATTG+TGG | - | chr4.1:11453399-11453418 | None:intergenic | 40.0% | |
| CGTATATAAGGTTTGCGGTT+TGG | + | chr4.1:11454436-11454455 | MS.gene47928:CDS | 40.0% | |
| CGTTGCCTATGATATACTCA+AGG | - | chr4.1:11453300-11453319 | None:intergenic | 40.0% | |
| CTTTGATGCAGTTTCAACCA+TGG | + | chr4.1:11453657-11453676 | MS.gene47928:CDS | 40.0% | |
| GACCCACCTGAAATATAAGA+GGG | - | chr4.1:11453214-11453233 | None:intergenic | 40.0% | |
| GCAAAGAAGCCTAAGTTATG+GGG | + | chr4.1:11454336-11454355 | MS.gene47928:CDS | 40.0% | |
| GCACTAAAAGCAACTGAGAA+AGG | - | chr4.1:11453820-11453839 | None:intergenic | 40.0% | |
| GGAGTAAGTGGAAGAAATAG+AGG | - | chr4.1:11452268-11452287 | None:intergenic | 40.0% | |
| GGCAAAGAAGCCTAAGTTAT+GGG | + | chr4.1:11454335-11454354 | MS.gene47928:CDS | 40.0% | |
| GGTTGAGAAGCAATTGAACA+AGG | + | chr4.1:11454563-11454582 | MS.gene47928:CDS | 40.0% | |
| GTTCGATAGAATCCCAAGAT+CGG | - | chr4.1:11454064-11454083 | None:intergenic | 40.0% | |
| GTTCTTAGTTTCTTCAGCCA+TGG | - | chr4.1:11453677-11453696 | None:intergenic | 40.0% | |
| TATTGGGCTAACAGTGAGAA+TGG | + | chr4.1:11454240-11454259 | MS.gene47928:CDS | 40.0% | |
| TCAAAAGAACGACTTCTTCC+CGG | + | chr4.1:11451001-11451020 | MS.gene47928:CDS | 40.0% | |
| TCATCAACAAGAGCAAACCA+AGG | - | chr4.1:11453973-11453992 | None:intergenic | 40.0% | |
| TGACCCACCTGAAATATAAG+AGG | - | chr4.1:11453215-11453234 | None:intergenic | 40.0% | |
| TGAGAAGCAATTGAACAAGG+TGG | + | chr4.1:11454566-11454585 | MS.gene47928:CDS | 40.0% | |
| TGCCTATGATATACTCAAGG+AGG | - | chr4.1:11453297-11453316 | None:intergenic | 40.0% | |
| TGGCAAAGAAGCCTAAGTTA+TGG | + | chr4.1:11454334-11454353 | MS.gene47928:CDS | 40.0% | |
| TGTATCCATTCTACAAGAGG+TGG | - | chr4.1:11452618-11452637 | None:intergenic | 40.0% | |
| TGTGGCTATGTAGTTGAAGA+TGG | - | chr4.1:11453497-11453516 | None:intergenic | 40.0% | |
| TTTGTTGCCTTTATAGCTGC+CGG | + | chr4.1:11453265-11453284 | MS.gene47928:CDS | 40.0% | |
| ! | AGTGAAGTCGTGGAAGTTTT+CGG | - | chr4.1:11453578-11453597 | None:intergenic | 40.0% |
| ! | ATCAGGGTTTTTGTTGCAGA+GGG | - | chr4.1:11453359-11453378 | None:intergenic | 40.0% |
| ! | CGAGTTTGAAGTGGAATAGA+GGG | - | chr4.1:11452313-11452332 | None:intergenic | 40.0% |
| ! | GACATTCCAATTGGTCTAGT+TGG | + | chr4.1:11453706-11453725 | MS.gene47928:CDS | 40.0% |
| ! | GAGTTTGAAGTGGAATAGAG+GGG | - | chr4.1:11452312-11452331 | None:intergenic | 40.0% |
| ! | GCTCTTGTTGATGAAAGAAC+AGG | + | chr4.1:11453979-11453998 | MS.gene47928:CDS | 40.0% |
| ! | GGGCATATCTGCTTTGTTAT+CGG | + | chr4.1:11451295-11451314 | MS.gene47928:CDS | 40.0% |
| ! | GTATTGTCGTTTGTCATCTC+GGG | + | chr4.1:11451275-11451294 | MS.gene47928:CDS | 40.0% |
| ! | GTTGCTTTCTTTACCGATCT+TGG | + | chr4.1:11454048-11454067 | MS.gene47928:CDS | 40.0% |
| ! | GTTTCACTAGGTGCTTTGAA+AGG | + | chr4.1:11453868-11453887 | MS.gene47928:CDS | 40.0% |
| ! | TAGTGCTGTTGGAATGGATT+GGG | + | chr4.1:11453834-11453853 | MS.gene47928:CDS | 40.0% |
| ! | TTAGTGCTGTTGGAATGGAT+TGG | + | chr4.1:11453833-11453852 | MS.gene47928:CDS | 40.0% |
| !! | AAAGGTACTCCCCATAACTT+AGG | - | chr4.1:11454348-11454367 | None:intergenic | 40.0% |
| !! | ACATACTAGTGGTTCTGATC+AGG | + | chr4.1:11454539-11454558 | MS.gene47928:CDS | 40.0% |
| !! | AGAGTTTGCTGTGGAAATTC+CGG | + | chr4.1:11451331-11451350 | MS.gene47928:CDS | 40.0% |
| !! | AGGAATGACAACGGTTTTGT+TGG | + | chr4.1:11453888-11453907 | MS.gene47928:CDS | 40.0% |
| !! | GTAGAAAAAGTACCTGCAAC+CGG | - | chr4.1:11451353-11451372 | None:intergenic | 40.0% |
| !! | GTTTTGTTGGTTAGTGCTGT+TGG | + | chr4.1:11453901-11453920 | MS.gene47928:CDS | 40.0% |
| !! | TAAGTTATGGGGAGTACCTT+TGG | + | chr4.1:11454347-11454366 | MS.gene47928:CDS | 40.0% |
| !! | TGCTTTTAGTGCTGTTGGAA+TGG | + | chr4.1:11453828-11453847 | MS.gene47928:CDS | 40.0% |
| !! | TTTGGTGCTGTAAACTGCAA+GGG | - | chr4.1:11453467-11453486 | None:intergenic | 40.0% |
| !!! | TCAGTTGCTTTTAGTGCTGT+TGG | + | chr4.1:11453823-11453842 | MS.gene47928:CDS | 40.0% |
| AAACGATCCTTCAACCGGTA+AGG | - | chr4.1:11451077-11451096 | None:intergenic | 45.0% | |
| AACTCTTAAACGACTCCTCC+GGG | - | chr4.1:11451022-11451041 | None:intergenic | 45.0% | |
| ACAAACGACAATACAACCGC+CGG | - | chr4.1:11451269-11451288 | None:intergenic | 45.0% | |
| ACACCATCTTTGTTCCTCTG+TGG | + | chr4.1:11454274-11454293 | MS.gene47928:CDS | 45.0% | |
| ATAGAGGACATTAGGAGGAG+GGG | - | chr4.1:11452252-11452271 | None:intergenic | 45.0% | |
| ATCTAGTGATCATGCAGAGC+TGG | + | chr4.1:11451106-11451125 | MS.gene47928:CDS | 45.0% | |
| ATTTGTGCTTACCGGACTTG+AGG | + | chr4.1:11451226-11451245 | MS.gene47928:CDS | 45.0% | |
| CAACTCTTAAACGACTCCTC+CGG | - | chr4.1:11451023-11451042 | None:intergenic | 45.0% | |
| CAATGGCAATAGGGTCAAGA+TGG | - | chr4.1:11453423-11453442 | None:intergenic | 45.0% | |
| CATAGCCACACTCTTACACA+TGG | + | chr4.1:11453507-11453526 | MS.gene47928:CDS | 45.0% | |
| CCAATTGGAATGTCTCTACC+AGG | - | chr4.1:11453700-11453719 | None:intergenic | 45.0% | |
| CCTGGTAGAGACATTCCAAT+TGG | + | chr4.1:11453697-11453716 | MS.gene47928:CDS | 45.0% | |
| CTGTCATGGAAACACCTTAC+CGG | + | chr4.1:11451060-11451079 | MS.gene47928:CDS | 45.0% | |
| CTTGCAGTTTACAGCACCAA+AGG | + | chr4.1:11453466-11453485 | MS.gene47928:CDS | 45.0% | |
| GAAGAAGACGTTGAACTGGT+GGG | + | chr4.1:11451160-11451179 | MS.gene47928:CDS | 45.0% | |
| GAGGAGTCGTTTAAGAGTTG+GGG | + | chr4.1:11451023-11451042 | MS.gene47928:CDS | 45.0% | |
| GATGTTTCCGGCAGCTATAA+AGG | - | chr4.1:11453275-11453294 | None:intergenic | 45.0% | |
| GCAACAAACGATCCTTCAAC+CGG | - | chr4.1:11451082-11451101 | None:intergenic | 45.0% | |
| GCAATTGAACAAGGTGGAAC+AGG | + | chr4.1:11454572-11454591 | MS.gene47928:CDS | 45.0% | |
| GCTGAAGAAACTAAGAACCC+TGG | + | chr4.1:11453679-11453698 | MS.gene47928:CDS | 45.0% | |
| GGAGGAGTCGTTTAAGAGTT+GGG | + | chr4.1:11451022-11451041 | MS.gene47928:CDS | 45.0% | |
| GTTGAAGATGGAAGAGCCTT+TGG | - | chr4.1:11453485-11453504 | None:intergenic | 45.0% | |
| TCAACAAGAGCAAACCAAGG+TGG | - | chr4.1:11453970-11453989 | None:intergenic | 45.0% | |
| TGAAGAAGACGTTGAACTGG+TGG | + | chr4.1:11451159-11451178 | MS.gene47928:CDS | 45.0% | |
| TGGAGATTAAGGCTAGGAGT+GGG | + | chr4.1:11451129-11451148 | MS.gene47928:CDS | 45.0% | |
| TTATAGGGACAGGTGCTCTT+TGG | + | chr4.1:11454298-11454317 | MS.gene47928:CDS | 45.0% | |
| TTCCACGACTTCACTCCTTT+CGG | + | chr4.1:11453583-11453602 | MS.gene47928:CDS | 45.0% | |
| ! | ATAAGGTTTGCGGTTTGGAC+AGG | + | chr4.1:11454441-11454460 | MS.gene47928:CDS | 45.0% |
| ! | CATCAGGGTTTTTGTTGCAG+AGG | - | chr4.1:11453360-11453379 | None:intergenic | 45.0% |
| ! | GCGAGTTTGAAGTGGAATAG+AGG | - | chr4.1:11452314-11452333 | None:intergenic | 45.0% |
| ! | GTGAAGTCGTGGAAGTTTTC+GGG | - | chr4.1:11453577-11453596 | None:intergenic | 45.0% |
| ! | TAAGGTTTGCGGTTTGGACA+GGG | + | chr4.1:11454442-11454461 | MS.gene47928:CDS | 45.0% |
| !! | CTTTGGTGCTGTAAACTGCA+AGG | - | chr4.1:11453468-11453487 | None:intergenic | 45.0% |
| !! | GGGTTTGGCTTTGATTAGAC+CGG | - | chr4.1:11453557-11453576 | None:intergenic | 45.0% |
| !! | TACTAGTGGTTCTGATCAGG+AGG | + | chr4.1:11454542-11454561 | MS.gene47928:CDS | 45.0% |
| !! | TGGCATTGGCACTTCTAGTA+AGG | + | chr4.1:11454121-11454140 | MS.gene47928:CDS | 45.0% |
| !!! | AATGATGGTTTTGGGGGGTT+TGG | - | chr4.1:11452160-11452179 | None:intergenic | 45.0% |
| !! | AAAAAATTATAAAAAAAGTA+CGG | - | chr4.1:11451683-11451702 | None:intergenic | 5.0% |
| AAAGAACGACTTCTTCCCGG+AGG | + | chr4.1:11451004-11451023 | MS.gene47928:CDS | 50.0% | |
| AAGGGCTGTGATGGCTACTA+GGG | - | chr4.1:11453449-11453468 | None:intergenic | 50.0% | |
| ACATTAGGAGGAGGGGCTTT+GGG | - | chr4.1:11452245-11452264 | None:intergenic | 50.0% | |
| ACCATACCATGAAGCCCGAA+AGG | - | chr4.1:11453601-11453620 | None:intergenic | 50.0% | |
| ACTAGGGCTGCAATGGCAAT+AGG | - | chr4.1:11453433-11453452 | None:intergenic | 50.0% | |
| AGCTGGTGGAGATTAAGGCT+AGG | + | chr4.1:11451123-11451142 | MS.gene47928:CDS | 50.0% | |
| CCTCTGTGGTTTATAGGGAC+AGG | + | chr4.1:11454288-11454307 | MS.gene47928:CDS | 50.0% | |
| CCTGTCCCTATAAACCACAG+AGG | - | chr4.1:11454291-11454310 | None:intergenic | 50.0% | |
| CGGAGGAGTCGTTTAAGAGT+TGG | + | chr4.1:11451021-11451040 | MS.gene47928:CDS | 50.0% | |
| CTAGGGCTGCAATGGCAATA+GGG | - | chr4.1:11453432-11453451 | None:intergenic | 50.0% | |
| GAAGGTAGCCAAGGAACCAA+AGG | - | chr4.1:11454366-11454385 | None:intergenic | 50.0% | |
| GACAGCCATGTGTAAGAGTG+TGG | - | chr4.1:11453515-11453534 | None:intergenic | 50.0% | |
| GGGCTAACAGTGAGAATGGA+TGG | + | chr4.1:11454244-11454263 | MS.gene47928:CDS | 50.0% | |
| GGTCAAGATGGCCATAGTCA+GGG | - | chr4.1:11453411-11453430 | None:intergenic | 50.0% | |
| GTAAACTGCAAGGGCTGTGA+TGG | - | chr4.1:11453458-11453477 | None:intergenic | 50.0% | |
| GTACTCACATGATGCCACCT+TGG | + | chr4.1:11453953-11453972 | MS.gene47928:CDS | 50.0% | |
| GTATATCATAGGCAACGCCG+CGG | + | chr4.1:11453303-11453322 | MS.gene47928:CDS | 50.0% | |
| GTGGAGATTAAGGCTAGGAG+TGG | + | chr4.1:11451128-11451147 | MS.gene47928:CDS | 50.0% | |
| TAGTGATCATGCAGAGCTGG+TGG | + | chr4.1:11451109-11451128 | MS.gene47928:CDS | 50.0% | |
| TCCACGACTTCACTCCTTTC+GGG | + | chr4.1:11453584-11453603 | MS.gene47928:CDS | 50.0% | |
| TCCTTTCGGGCTTCATGGTA+TGG | + | chr4.1:11453597-11453616 | MS.gene47928:CDS | 50.0% | |
| TGAACTGGTGGGACTTGATG+TGG | + | chr4.1:11451171-11451190 | MS.gene47928:CDS | 50.0% | |
| TGCAGAGCTGGTGGAGATTA+AGG | + | chr4.1:11451118-11451137 | MS.gene47928:CDS | 50.0% | |
| TGGTGGGACTTGATGTGGTT+CGG | + | chr4.1:11451176-11451195 | MS.gene47928:CDS | 50.0% | |
| TTCACTCCTTTCGGGCTTCA+TGG | + | chr4.1:11453592-11453611 | MS.gene47928:CDS | 50.0% | |
| ! | AGGGTTTTTGTTGCAGAGGG+TGG | - | chr4.1:11453356-11453375 | None:intergenic | 50.0% |
| ! | GACTTGATGTGGTTCGGCAT+CGG | + | chr4.1:11451182-11451201 | MS.gene47928:CDS | 50.0% |
| ! | GGAAACACCTTACCGGTTGA+AGG | + | chr4.1:11451067-11451086 | MS.gene47928:CDS | 50.0% |
| !!! | GTCGTGGAAGTTTTCGGGTT+TGG | - | chr4.1:11453572-11453591 | None:intergenic | 50.0% |
| CAAGGGCTGTGATGGCTACT+AGG | - | chr4.1:11453450-11453469 | None:intergenic | 55.0% | |
| CATTAGGAGGAGGGGCTTTG+GGG | - | chr4.1:11452244-11452263 | None:intergenic | 55.0% | |
| GACATTAGGAGGAGGGGCTT+TGG | - | chr4.1:11452246-11452265 | None:intergenic | 55.0% | |
| GATGGCTACTAGGGCTGCAA+TGG | - | chr4.1:11453440-11453459 | None:intergenic | 55.0% | |
| GCTGTGGAAATTCCGGTTGC+AGG | + | chr4.1:11451338-11451357 | MS.gene47928:CDS | 55.0% | |
| GGGTCAAGATGGCCATAGTC+AGG | - | chr4.1:11453412-11453431 | None:intergenic | 55.0% | |
| TGCTTACCGGACTTGAGGCT+AGG | + | chr4.1:11451231-11451250 | MS.gene47928:CDS | 55.0% | |
| TTCCTGCCTAGCCTCAAGTC+CGG | - | chr4.1:11451240-11451259 | None:intergenic | 55.0% | |
| ! | ATTAGGAGGAGGGGCTTTGG+GGG | - | chr4.1:11452243-11452262 | None:intergenic | 55.0% |
| !! | ATCGGCGCCGTTATTGGTTC+TGG | + | chr4.1:11451200-11451219 | MS.gene47928:CDS | 55.0% |
| !! | GGGGAGTACCTTTGGTTCCT+TGG | + | chr4.1:11454355-11454374 | MS.gene47928:CDS | 55.0% |
| CTTGAGGCTAGGCAGGAAGC+AGG | + | chr4.1:11451242-11451261 | MS.gene47928:CDS | 60.0% | |
| GCAGAGGGTGGCGAAATACG+AGG | - | chr4.1:11453344-11453363 | None:intergenic | 60.0% | |
| GCAGTTGGAGAGGTGGTCGA+TGG | + | chr4.1:11450948-11450967 | MS.gene47928:CDS | 60.0% | |
| GCCCGAAAGGAGTGAAGTCG+TGG | - | chr4.1:11453588-11453607 | None:intergenic | 60.0% | |
| GGTCCATGATCGAGCTACCG+CGG | - | chr4.1:11453323-11453342 | None:intergenic | 60.0% | |
| GTTGGAGAGGTGGTCGATGG+CGG | + | chr4.1:11450951-11450970 | MS.gene47928:CDS | 60.0% | |
| TACCGGACTTGAGGCTAGGC+AGG | + | chr4.1:11451235-11451254 | MS.gene47928:CDS | 60.0% | |
| !! | TTCGGCATCGGCGCCGTTAT+TGG | + | chr4.1:11451194-11451213 | MS.gene47928:CDS | 60.0% |
| ACGCCGCGGTAGCTCGATCA+TGG | + | chr4.1:11453317-11453336 | MS.gene47928:CDS | 65.0% | |
| GGCTAGGCAGGAAGCAGGTC+CGG | + | chr4.1:11451247-11451266 | MS.gene47928:CDS | 65.0% | |
| TAGGCAGGAAGCAGGTCCGG+CGG | + | chr4.1:11451250-11451269 | MS.gene47928:CDS | 65.0% | |
| ! | TCGATGGCGGCGGAGTACGT+AGG | + | chr4.1:11450964-11450983 | MS.gene47928:CDS | 65.0% |
| GGCGGCGGAGTACGTAGGAG+AGG | + | chr4.1:11450969-11450988 | MS.gene47928:CDS | 70.0% | |
| ! | GGAGAGGTGGTCGATGGCGG+CGG | + | chr4.1:11450954-11450973 | MS.gene47928:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 11450945 | 11454626 | 11450945 | ID=MS.gene47928 |
| chr4.1 | mRNA | 11450945 | 11454626 | 11450945 | ID=MS.gene47928.t1;Parent=MS.gene47928 |
| chr4.1 | exon | 11450945 | 11451359 | 11450945 | ID=MS.gene47928.t1.exon1;Parent=MS.gene47928.t1 |
| chr4.1 | CDS | 11450945 | 11451359 | 11450945 | ID=cds.MS.gene47928.t1;Parent=MS.gene47928.t1 |
| chr4.1 | exon | 11453227 | 11454626 | 11453227 | ID=MS.gene47928.t1.exon2;Parent=MS.gene47928.t1 |
| chr4.1 | CDS | 11453227 | 11454626 | 11453227 | ID=cds.MS.gene47928.t1;Parent=MS.gene47928.t1 |
| Gene Sequence |
| Protein sequence |
