Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47931.t1 | XP_003630017.1 | 98.6 | 583 | 8 | 0 | 4 | 586 | 17 | 599 | 0.00E+00 | 1106.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47931.t1 | Q84MA5 | 66.9 | 553 | 182 | 1 | 10 | 561 | 16 | 568 | 2.0e-210 | 733.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47931.t1 | G7L9L9 | 98.6 | 583 | 8 | 0 | 4 | 586 | 17 | 599 | 0.0e+00 | 1106.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene47931 | MS.gene32277 | PPI |
| MS.gene007811 | MS.gene47931 | PPI |
| MS.gene47931 | MS.gene042480 | PPI |
| MS.gene41792 | MS.gene47931 | PPI |
| MS.gene47931 | MS.gene08148 | PPI |
| MS.gene47931 | MS.gene41790 | PPI |
| MS.gene47931 | MS.gene08144 | PPI |
| MS.gene38965 | MS.gene47931 | PPI |
| MS.gene47931 | MS.gene073450 | PPI |
| MS.gene58674 | MS.gene47931 | PPI |
| MS.gene47931 | MS.gene007812 | PPI |
| MS.gene032361 | MS.gene47931 | PPI |
| MS.gene47931 | MS.gene41795 | PPI |
| MS.gene47931 | MS.gene38964 | PPI |
| MS.gene042491 | MS.gene47931 | PPI |
| MS.gene47931 | MS.gene00402 | PPI |
| MS.gene47931 | MS.gene47297 | PPI |
| MS.gene47931 | MS.gene49831 | PPI |
| MS.gene47931 | MS.gene041367 | PPI |
| MS.gene47931 | MS.gene08137 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47931.t1 | MTR_8g089360 | 98.459 | 584 | 9 | 0 | 3 | 586 | 16 | 599 | 0.0 | 1175 |
| MS.gene47931.t1 | MTR_8g089360 | 98.797 | 582 | 7 | 0 | 5 | 586 | 1 | 582 | 0.0 | 1174 |
| MS.gene47931.t1 | MTR_8g089320 | 74.042 | 574 | 145 | 3 | 13 | 582 | 21 | 594 | 0.0 | 855 |
| MS.gene47931.t1 | MTR_1g030660 | 60.825 | 582 | 222 | 3 | 3 | 583 | 8 | 584 | 0.0 | 717 |
| MS.gene47931.t1 | MTR_2g035430 | 56.743 | 571 | 245 | 2 | 12 | 581 | 20 | 589 | 0.0 | 674 |
| MS.gene47931.t1 | MTR_8g089340 | 72.931 | 447 | 116 | 2 | 141 | 582 | 1 | 447 | 0.0 | 619 |
| MS.gene47931.t1 | MTR_8g461380 | 50.268 | 559 | 274 | 3 | 12 | 567 | 27 | 584 | 0.0 | 550 |
| MS.gene47931.t1 | MTR_1g111740 | 42.660 | 579 | 307 | 6 | 20 | 583 | 6 | 574 | 4.54e-153 | 452 |
| MS.gene47931.t1 | MTR_4g099270 | 39.817 | 545 | 313 | 6 | 52 | 585 | 10 | 550 | 3.83e-123 | 374 |
| MS.gene47931.t1 | MTR_4g099270 | 44.828 | 377 | 204 | 2 | 24 | 396 | 3 | 379 | 3.01e-103 | 318 |
| MS.gene47931.t1 | MTR_4g099270 | 37.330 | 442 | 262 | 6 | 155 | 585 | 1 | 438 | 2.50e-89 | 283 |
| MS.gene47931.t1 | MTR_4g099270 | 43.607 | 305 | 168 | 2 | 24 | 324 | 3 | 307 | 2.00e-78 | 250 |
| MS.gene47931.t1 | MTR_7g086510 | 35.025 | 394 | 249 | 2 | 52 | 438 | 26 | 419 | 2.32e-70 | 239 |
| MS.gene47931.t1 | MTR_6g027630 | 34.434 | 424 | 260 | 5 | 27 | 438 | 7 | 424 | 2.06e-69 | 235 |
| MS.gene47931.t1 | MTR_6g027630 | 34.204 | 421 | 265 | 4 | 27 | 438 | 7 | 424 | 5.81e-69 | 235 |
| MS.gene47931.t1 | MTR_7g007850 | 32.083 | 533 | 342 | 12 | 46 | 563 | 29 | 556 | 3.61e-68 | 231 |
| MS.gene47931.t1 | MTR_6g027680 | 34.236 | 406 | 254 | 4 | 42 | 438 | 26 | 427 | 7.91e-68 | 230 |
| MS.gene47931.t1 | MTR_7g086610 | 33.582 | 402 | 257 | 3 | 44 | 438 | 15 | 413 | 8.56e-67 | 229 |
| MS.gene47931.t1 | MTR_6g027660 | 33.985 | 409 | 251 | 6 | 42 | 438 | 24 | 425 | 2.22e-66 | 228 |
| MS.gene47931.t1 | MTR_7g007850 | 29.196 | 572 | 337 | 10 | 46 | 563 | 29 | 586 | 3.83e-66 | 226 |
| MS.gene47931.t1 | MTR_7g007850 | 35.411 | 401 | 250 | 5 | 46 | 438 | 29 | 428 | 2.67e-65 | 222 |
| MS.gene47931.t1 | MTR_7g007850 | 35.411 | 401 | 250 | 5 | 46 | 438 | 29 | 428 | 5.80e-65 | 222 |
| MS.gene47931.t1 | MTR_6g027650 | 33.763 | 388 | 248 | 3 | 60 | 438 | 30 | 417 | 9.20e-65 | 223 |
| MS.gene47931.t1 | MTR_6g034535 | 46.320 | 231 | 112 | 4 | 353 | 582 | 89 | 308 | 1.01e-63 | 212 |
| MS.gene47931.t1 | MTR_6g034535 | 44.792 | 96 | 28 | 1 | 90 | 185 | 19 | 89 | 3.33e-16 | 80.5 |
| MS.gene47931.t1 | MTR_8g089342 | 75.214 | 117 | 29 | 0 | 14 | 130 | 23 | 139 | 8.10e-58 | 190 |
| MS.gene47931.t1 | MTR_6g027630 | 33.138 | 341 | 215 | 3 | 108 | 438 | 2 | 339 | 3.42e-51 | 185 |
| MS.gene47931.t1 | MTR_6g027670 | 31.646 | 158 | 108 | 0 | 281 | 438 | 1 | 158 | 1.63e-22 | 99.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47931.t1 | AT4G21120 | 65.278 | 576 | 199 | 1 | 10 | 584 | 16 | 591 | 0.0 | 775 |
| MS.gene47931.t1 | AT2G34960 | 58.047 | 553 | 229 | 2 | 12 | 562 | 12 | 563 | 0.0 | 661 |
| MS.gene47931.t1 | AT4G21120 | 62.585 | 441 | 164 | 1 | 145 | 584 | 1 | 441 | 0.0 | 568 |
| MS.gene47931.t1 | AT1G17120 | 50.998 | 551 | 268 | 2 | 13 | 562 | 30 | 579 | 0.0 | 558 |
| MS.gene47931.t1 | AT5G04770 | 40.799 | 576 | 310 | 6 | 22 | 574 | 15 | 582 | 6.32e-146 | 434 |
| MS.gene47931.t1 | AT3G10600 | 41.536 | 573 | 301 | 6 | 19 | 565 | 11 | 575 | 9.29e-142 | 423 |
| MS.gene47931.t1 | AT5G04770 | 44.010 | 384 | 205 | 2 | 22 | 395 | 15 | 398 | 1.30e-107 | 329 |
| MS.gene47931.t1 | AT3G10600 | 39.588 | 437 | 230 | 6 | 155 | 565 | 1 | 429 | 5.23e-99 | 308 |
| MS.gene47931.t1 | AT5G04770 | 38.600 | 443 | 241 | 6 | 155 | 574 | 1 | 435 | 2.30e-97 | 304 |
| MS.gene47931.t1 | AT3G03720 | 32.587 | 402 | 264 | 2 | 44 | 438 | 4 | 405 | 2.27e-69 | 235 |
| MS.gene47931.t1 | AT5G36940 | 32.924 | 407 | 262 | 4 | 42 | 438 | 5 | 410 | 2.70e-68 | 233 |
| MS.gene47931.t1 | AT1G58030 | 31.002 | 429 | 279 | 4 | 17 | 438 | 3 | 421 | 1.47e-65 | 226 |
| MS.gene47931.t1 | AT1G05940 | 30.037 | 546 | 328 | 10 | 56 | 565 | 40 | 567 | 5.34e-63 | 218 |
| MS.gene47931.t1 | AT1G05940 | 29.724 | 508 | 309 | 8 | 56 | 533 | 40 | 529 | 1.14e-59 | 207 |
| MS.gene47931.t1 | AT1G05940 | 31.221 | 426 | 280 | 5 | 56 | 469 | 40 | 464 | 3.49e-59 | 205 |
| MS.gene47931.t1 | AT1G05940 | 28.821 | 458 | 274 | 8 | 143 | 565 | 9 | 449 | 6.23e-43 | 160 |
Find 117 sgRNAs with CRISPR-Local
Find 222 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAAAAGTTTAGGTGATTA+TGG | 0.183327 | 4.1:-11421245 | MS.gene47931:CDS |
| GCTATAAATATATTCCTTCT+TGG | 0.203938 | 4.1:-11418505 | MS.gene47931:CDS |
| TGAATGGTTGGGATCTTATT+TGG | 0.215470 | 4.1:-11421106 | MS.gene47931:CDS |
| AAACTAAATGCAACCGAAAA+TGG | 0.229991 | 4.1:+11419081 | None:intergenic |
| ATTCTATCTTTCAACCTAAA+TGG | 0.233964 | 4.1:+11421203 | None:intergenic |
| CACAATATGAACCCTGATTA+TGG | 0.260743 | 4.1:-11419501 | MS.gene47931:CDS |
| TCAAAGTCTTCTTCATTTGA+TGG | 0.269199 | 4.1:+11421126 | None:intergenic |
| TGCATACTTAAGAGTAGAAT+TGG | 0.276540 | 4.1:-11419661 | MS.gene47931:CDS |
| GTTGCAGAGGGTGGCAAAAT+AGG | 0.283118 | 4.1:+11419554 | None:intergenic |
| TTGATAAAGATTCATATATA+AGG | 0.285317 | 4.1:-11418477 | MS.gene47931:CDS |
| ATACTCCTTGAATATGTTAT+AGG | 0.292518 | 4.1:-11419606 | MS.gene47931:CDS |
| TATGCTTCATTTGCTCCTTT+TGG | 0.292689 | 4.1:-11419315 | MS.gene47931:CDS |
| CATTTATGAAAACACCATTT+AGG | 0.293778 | 4.1:-11421217 | MS.gene47931:CDS |
| GTTGAAGAGAGAAGAGATTC+TGG | 0.301802 | 4.1:+11419416 | None:intergenic |
| GTGCGTCGTTATTATTCAAC+TGG | 0.304117 | 4.1:-11418760 | MS.gene47931:CDS |
| AAGCAAAGAAACCTAAAGTT+TGG | 0.310693 | 4.1:-11418567 | MS.gene47931:CDS |
| GAAGATTCATTCAAAAGTTT+AGG | 0.314300 | 4.1:-11421254 | MS.gene47931:CDS |
| AAAGATTCATATATAAGGTT+TGG | 0.336683 | 4.1:-11418472 | MS.gene47931:CDS |
| ATCGGCGCCGTCGTCGGTTC+CGG | 0.340214 | 4.1:-11421077 | MS.gene47931:CDS |
| ATGAGGGCTATAACAGCAAT+AGG | 0.342880 | 4.1:+11419468 | None:intergenic |
| GACATTCCTATTGGTCTTGT+AGG | 0.349217 | 4.1:-11419192 | MS.gene47931:CDS |
| TTTCGGGGTTGGCGTTGATT+AGG | 0.363441 | 4.1:+11419340 | None:intergenic |
| ATTGCCTTCATCATCATTGT+TGG | 0.370746 | 4.1:-11419363 | MS.gene47931:CDS |
| GATCTTATTTGGTTCGGAAT+CGG | 0.376968 | 4.1:-11421095 | MS.gene47931:CDS |
| AGCAAAGAAACCTAAAGTTT+GGG | 0.379219 | 4.1:-11418566 | MS.gene47931:CDS |
| AAGATTCATATATAAGGTTT+GGG | 0.381982 | 4.1:-11418471 | MS.gene47931:CDS |
| GGGTCAAGATGACCATAATC+AGG | 0.382582 | 4.1:+11419489 | None:intergenic |
| ATAAGGTTTGGGATGTGGTC+AGG | 0.401357 | 4.1:-11418460 | MS.gene47931:CDS |
| TGTTGCATTGGGAGCATTGA+AGG | 0.418790 | 4.1:-11419031 | MS.gene47931:CDS |
| GCTCTTGTTCATGAGAAAAC+CGG | 0.418847 | 4.1:-11418919 | MS.gene47931:CDS |
| CAAGGGTGGCGATGGCTATG+AGG | 0.419014 | 4.1:+11419451 | None:intergenic |
| GGTTGGGATCTTATTTGGTT+CGG | 0.419604 | 4.1:-11421101 | MS.gene47931:CDS |
| TAAGTGTTGAAATCGACAAT+AGG | 0.420519 | 4.1:+11418815 | None:intergenic |
| GGCTAAATACATTGTTGCAT+TGG | 0.420648 | 4.1:-11419043 | MS.gene47931:CDS |
| GGTTGAAAGCAGACATACTA+TGG | 0.423044 | 4.1:-11418377 | MS.gene47931:CDS |
| CTTTGATGCAGTGTCAACTA+TGG | 0.425840 | 4.1:-11419241 | MS.gene47931:CDS |
| GCTAAATACATTGTTGCATT+GGG | 0.433060 | 4.1:-11419042 | MS.gene47931:CDS |
| TGAAGAAGACTTTGAATGGT+TGG | 0.433470 | 4.1:-11421118 | MS.gene47931:CDS |
| ATTGATCCTACAAGACCAAT+AGG | 0.439236 | 4.1:+11419186 | None:intergenic |
| CATATATAAGGTTTGGGATG+TGG | 0.442523 | 4.1:-11418465 | MS.gene47931:CDS |
| CAAATGAAGAAGACTTTGAA+TGG | 0.443211 | 4.1:-11421122 | MS.gene47931:CDS |
| TATTGGTCTTGTAGGATCAA+TGG | 0.444727 | 4.1:-11419184 | MS.gene47931:CDS |
| GAAGAAGACTTTGAATGGTT+GGG | 0.451214 | 4.1:-11421117 | MS.gene47931:CDS |
| AGTAGAATTGGGAGACTTTG+TGG | 0.458556 | 4.1:-11419649 | MS.gene47931:CDS |
| CTGCTCCTATAACATATTCA+AGG | 0.458801 | 4.1:+11419601 | None:intergenic |
| GTACTCACATGATGCCTCCT+TGG | 0.466399 | 4.1:-11418945 | MS.gene47931:CDS |
| TTTGTGGCCTTCATAGCTGC+TGG | 0.472452 | 4.1:-11419633 | MS.gene47931:CDS |
| CTCTTGTTCATGAGAAAACC+GGG | 0.472524 | 4.1:-11418918 | MS.gene47931:CDS |
| AAATGGTGCATTGACATCAA+TGG | 0.475079 | 4.1:+11419098 | None:intergenic |
| CCTGGCAGAGACATTCCTAT+TGG | 0.477268 | 4.1:-11419201 | MS.gene47931:CDS |
| GCATACTTAAGAGTAGAATT+GGG | 0.485267 | 4.1:-11419660 | MS.gene47931:CDS |
| TATGTTTCCAGCAGCTATGA+AGG | 0.486802 | 4.1:+11419626 | None:intergenic |
| TTCGGAATCGGCGCCGTCGT+CGG | 0.489934 | 4.1:-11421083 | MS.gene47931:CDS |
| TGAGTGATGGTTGGATTGGA+TGG | 0.492403 | 4.1:-11418648 | MS.gene47931:CDS |
| CCAATAGGAATGTCTCTGCC+AGG | 0.497538 | 4.1:+11419201 | None:intergenic |
| CAGCAGCCGTAGCTCGATCA+TGG | 0.497728 | 4.1:-11419581 | MS.gene47931:CDS |
| ACTTTAGGTTTCTTTGCTTG+TGG | 0.499703 | 4.1:+11418571 | None:intergenic |
| CTTGAAGCTCGTGAGGAGGC+TGG | 0.502388 | 4.1:-11421035 | MS.gene47931:CDS |
| TAAGGTTTGGGATGTGGTCA+GGG | 0.502438 | 4.1:-11418459 | MS.gene47931:CDS |
| ACTATTATACGAAAATCGTT+AGG | 0.506095 | 4.1:+11419525 | None:intergenic |
| CATAATCAGGGTTCATATTG+TGG | 0.510899 | 4.1:+11419502 | None:intergenic |
| AAATTATATGACACAGGAGA+TGG | 0.511787 | 4.1:-11421315 | None:intergenic |
| GAAGGTAACCAAGGAACTAA+AGG | 0.517947 | 4.1:+11418538 | None:intergenic |
| AAAAGATTACATGGAGATTG+TGG | 0.522533 | 4.1:-11421168 | MS.gene47931:CDS |
| AAAACACCTCTGGTACCAAA+AGG | 0.527195 | 4.1:+11419300 | None:intergenic |
| TGTAGCATTCAAAGGTGTCC+CGG | 0.529346 | 4.1:+11418900 | None:intergenic |
| TACACGATCAAAAGATTACA+TGG | 0.530851 | 4.1:-11421177 | MS.gene47931:CDS |
| ATAGAGCAATGAGTGATGGT+TGG | 0.531056 | 4.1:-11418657 | MS.gene47931:CDS |
| TTCTGGTGCTTAAGACTGCA+AGG | 0.531934 | 4.1:+11419433 | None:intergenic |
| AACAAGAAGGCAAATACCTC+CGG | 0.540070 | 4.1:+11418594 | None:intergenic |
| AGAGATTAACAATGTTGAAG+AGG | 0.543356 | 4.1:-11418338 | MS.gene47931:CDS |
| TTTGAATGCTACAATTGCAA+TGG | 0.543834 | 4.1:-11418890 | MS.gene47931:CDS |
| GCAATGAGTGATGGTTGGAT+TGG | 0.544767 | 4.1:-11418652 | MS.gene47931:CDS |
| GAAAATGCCGGAACCGACGA+CGG | 0.546498 | 4.1:+11421070 | None:intergenic |
| GCTGTGGAAATTCCTGTCGC+AGG | 0.549047 | 4.1:-11420939 | MS.gene47931:intron |
| TAAGACTGCAAGGGTGGCGA+TGG | 0.550212 | 4.1:+11419443 | None:intergenic |
| TGCGTCGTTATTATTCAACT+GGG | 0.550353 | 4.1:-11418759 | MS.gene47931:CDS |
| TTGATTATTGGATCTTCATG+TGG | 0.550908 | 4.1:-11418691 | MS.gene47931:CDS |
| GACAACATTAACCAACAAAA+CGG | 0.553927 | 4.1:+11418999 | None:intergenic |
| ATTGCAATTGTAGCATTCAA+AGG | 0.554677 | 4.1:+11418892 | None:intergenic |
| CAGTGTAATAAACCTGCGAC+AGG | 0.557065 | 4.1:+11420927 | None:intergenic |
| GCATACGACAAAACAACGGC+AGG | 0.559328 | 4.1:+11421011 | None:intergenic |
| CACGGGTCTTGAAGCTCGTG+AGG | 0.559748 | 4.1:-11421042 | MS.gene47931:CDS |
| GTTTATAGAGCAATGAGTGA+TGG | 0.561915 | 4.1:-11418661 | MS.gene47931:CDS |
| TGCTTCTTATGATGCATCAA+AGG | 0.567964 | 4.1:-11418401 | MS.gene47931:CDS |
| TGCAGTGTCAACTATGGCCG+AGG | 0.568528 | 4.1:-11419235 | MS.gene47931:CDS |
| GTTGCATTGGGAGCATTGAA+GGG | 0.572087 | 4.1:-11419030 | MS.gene47931:CDS |
| AAGGGTGGCGATGGCTATGA+GGG | 0.572955 | 4.1:+11419452 | None:intergenic |
| CTTTATCAATAGATCCAAGA+AGG | 0.573540 | 4.1:+11418491 | None:intergenic |
| TAGGCCAACAATGATGATGA+AGG | 0.578906 | 4.1:+11419359 | None:intergenic |
| TGAGGGCTATAACAGCAATA+GGG | 0.590082 | 4.1:+11419469 | None:intergenic |
| CAAATTAAATTATATGACAC+AGG | 0.591539 | 4.1:-11421321 | None:intergenic |
| TCTTTGCTTGTGGAACAAGA+AGG | 0.591771 | 4.1:+11418581 | None:intergenic |
| AATGGTTACAATAACTTCCG+TGG | 0.596952 | 4.1:-11418872 | MS.gene47931:CDS |
| GCAGAGGGTGGCAAAATAGG+AGG | 0.598124 | 4.1:+11419557 | None:intergenic |
| AATTATATGACACAGGAGAT+GGG | 0.599472 | 4.1:-11421314 | None:intergenic |
| GCAAAGAAACCTAAAGTTTG+GGG | 0.603737 | 4.1:-11418565 | MS.gene47931:CDS |
| GGAGGTCCATGATCGAGCTA+CGG | 0.611878 | 4.1:+11419575 | None:intergenic |
| GGTCAAGATGACCATAATCA+GGG | 0.614215 | 4.1:+11419490 | None:intergenic |
| GGGTCTTGAAGCTCGTGAGG+AGG | 0.615839 | 4.1:-11421039 | MS.gene47931:CDS |
| ACCCGTGAGAACGAAAATGC+CGG | 0.617637 | 4.1:+11421058 | None:intergenic |
| CTGTTACACTGAGTTCGCTG+TGG | 0.620747 | 4.1:-11420955 | MS.gene47931:CDS |
| CAATAGGAATGTCTCTGCCA+GGG | 0.621672 | 4.1:+11419202 | None:intergenic |
| TTCTTATGATGCATCAAAGG+AGG | 0.629051 | 4.1:-11418398 | MS.gene47931:CDS |
| AGCAAAGAAAAGAACAGCTG+AGG | 0.637960 | 4.1:+11419272 | None:intergenic |
| GAGTGATGGTTGGATTGGAT+GGG | 0.641500 | 4.1:-11418647 | MS.gene47931:CDS |
| GGTGCTTAAGACTGCAAGGG+TGG | 0.641563 | 4.1:+11419437 | None:intergenic |
| TCTGGTGCTTAAGACTGCAA+GGG | 0.651168 | 4.1:+11419434 | None:intergenic |
| CAAAGAAACCTAAAGTTTGG+GGG | 0.656196 | 4.1:-11418564 | MS.gene47931:CDS |
| GACAGCATACGACAAAACAA+CGG | 0.658241 | 4.1:+11421007 | None:intergenic |
| CCGGTTCCTAAAAGCCACAA+TGG | 0.660149 | 4.1:+11418613 | None:intergenic |
| AAAGAAACCTAAAGTTTGGG+GGG | 0.664460 | 4.1:-11418563 | MS.gene47931:CDS |
| AATGTGAGTTAAATAACGTG+AGG | 0.693226 | 4.1:+11418972 | None:intergenic |
| GCGTCGTTATTATTCAACTG+GGG | 0.713208 | 4.1:-11418758 | MS.gene47931:CDS |
| TCATGAACAAGAGCAAACCA+AGG | 0.716329 | 4.1:+11418928 | None:intergenic |
| TGAACAAGAGCAAACCAAGG+AGG | 0.732183 | 4.1:+11418931 | None:intergenic |
| GAGATGGGTACAGAAAACAG+TGG | 0.787629 | 4.1:-11421299 | MS.gene47931:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAAATTTCCTAAATAA+AGG | + | chr4.1:11418795-11418814 | None:intergenic | 10.0% |
| !!! | ATTTTGTGATTTATTTTTTA+AGG | - | chr4.1:11418810-11418829 | MS.gene47931:CDS | 10.0% |
| !!! | TTAATTTTTTTATAGTGTTA+TGG | - | chr4.1:11419745-11419764 | MS.gene47931:intron | 10.0% |
| !! | TACAAAATGTATAGAAAAAT+AGG | + | chr4.1:11419674-11419693 | None:intergenic | 15.0% |
| !! | TTGATAAAGATTCATATATA+AGG | - | chr4.1:11421155-11421174 | MS.gene47931:CDS | 15.0% |
| !!! | TATTTTTTATTGATATAGTC+AGG | + | chr4.1:11419327-11419346 | None:intergenic | 15.0% |
| !!! | TGAATATTATACCTTTATTT+AGG | - | chr4.1:11418781-11418800 | MS.gene47931:CDS | 15.0% |
| !!! | TGAGTAATTAATCATTTTTT+TGG | + | chr4.1:11419179-11419198 | None:intergenic | 15.0% |
| !! | AAAGATTCATATATAAGGTT+TGG | - | chr4.1:11421160-11421179 | MS.gene47931:CDS | 20.0% |
| !! | AAGATTCATATATAAGGTTT+GGG | - | chr4.1:11421161-11421180 | MS.gene47931:CDS | 20.0% |
| !! | AAGTATAAATATGACTTTGT+TGG | + | chr4.1:11419351-11419370 | None:intergenic | 20.0% |
| !! | ATCAACTATTATGTAGAAAA+TGG | + | chr4.1:11419869-11419888 | None:intergenic | 20.0% |
| !! | ATTAATTACTCATGAATTGA+AGG | - | chr4.1:11419187-11419206 | MS.gene47931:CDS | 20.0% |
| !! | TCAACTATTATGTAGAAAAT+GGG | + | chr4.1:11419868-11419887 | None:intergenic | 20.0% |
| !! | TGTATTTCTTAAAGTTAGAA+GGG | - | chr4.1:11419690-11419709 | MS.gene47931:intron | 20.0% |
| !! | TTGTATTTCTTAAAGTTAGA+AGG | - | chr4.1:11419689-11419708 | MS.gene47931:intron | 20.0% |
| !! | TTTAATTGATGTTATTCGTA+CGG | + | chr4.1:11419429-11419448 | None:intergenic | 20.0% |
| !! | TTTATAGCAATAGAAAAAGA+AGG | + | chr4.1:11421115-11421134 | None:intergenic | 20.0% |
| !! | TTTCTACATAATAGTTGATT+TGG | - | chr4.1:11419870-11419889 | MS.gene47931:intron | 20.0% |
| !!! | ATTAATCATTTTTTTGGTAG+TGG | + | chr4.1:11419173-11419192 | None:intergenic | 20.0% |
| !!! | ATTTAACTTTTAAGGTAAGA+GGG | + | chr4.1:11419818-11419837 | None:intergenic | 20.0% |
| !!! | TGTTTTAGAGTATGTTTTTA+AGG | + | chr4.1:11419493-11419512 | None:intergenic | 20.0% |
| !!! | TTAAAAGTATGTTTGAATAG+AGG | - | chr4.1:11418918-11418937 | MS.gene47931:CDS | 20.0% |
| !!! | TTGATTTACTATTTTCTCAT+TGG | - | chr4.1:11421202-11421221 | MS.gene47931:CDS | 20.0% |
| !!! | TTTTTATAGTGTTATGGTTA+TGG | - | chr4.1:11419751-11419770 | MS.gene47931:intron | 20.0% |
| ! | ACTATTATACGAAAATCGTT+AGG | + | chr4.1:11420110-11420129 | None:intergenic | 25.0% |
| ! | ATACTCCTTGAATATGTTAT+AGG | - | chr4.1:11420026-11420045 | MS.gene47931:intron | 25.0% |
| ! | ATTCTATCTTTCAACCTAAA+TGG | + | chr4.1:11418432-11418451 | None:intergenic | 25.0% |
| ! | CATTTATGAAAACACCATTT+AGG | - | chr4.1:11418415-11418434 | MS.gene47931:CDS | 25.0% |
| ! | GAAGATTCATTCAAAAGTTT+AGG | - | chr4.1:11418378-11418397 | MS.gene47931:CDS | 25.0% |
| ! | GCTATAAATATATTCCTTCT+TGG | - | chr4.1:11421127-11421146 | MS.gene47931:CDS | 25.0% |
| ! | GTCATATTTATACTTAAAGC+TGG | - | chr4.1:11419356-11419375 | MS.gene47931:CDS | 25.0% |
| ! | TGCATAAAATATGCAAAGTT+CGG | - | chr4.1:11419133-11419152 | MS.gene47931:CDS | 25.0% |
| ! | TTCAAAAGTTTAGGTGATTA+TGG | - | chr4.1:11418387-11418406 | MS.gene47931:CDS | 25.0% |
| !! | AAACTTTTGAATGAATCTTC+TGG | + | chr4.1:11418378-11418397 | None:intergenic | 25.0% |
| !! | AACTTTTGAATGAATCTTCT+GGG | + | chr4.1:11418377-11418396 | None:intergenic | 25.0% |
| !! | TTTGAATAGAGGATTTTGAA+GGG | - | chr4.1:11418929-11418948 | MS.gene47931:CDS | 25.0% |
| !! | TTTTGTAAACACAACAATCA+TGG | - | chr4.1:11419242-11419261 | MS.gene47931:CDS | 25.0% |
| !! | TTTTTATTGATATAGTCAGG+CGG | + | chr4.1:11419324-11419343 | None:intergenic | 25.0% |
| !!! | GATTTAACTTTTAAGGTAAG+AGG | + | chr4.1:11419819-11419838 | None:intergenic | 25.0% |
| !!! | GTATGTGTTGTTTTGATTAT+TGG | - | chr4.1:11420929-11420948 | MS.gene47931:intron | 25.0% |
| !!! | TATGTTTTTAAGGTGAGTTT+TGG | + | chr4.1:11419483-11419502 | None:intergenic | 25.0% |
| !!! | TGCATTGGATTTAACTTTTA+AGG | + | chr4.1:11419826-11419845 | None:intergenic | 25.0% |
| AAAAGATTACATGGAGATTG+TGG | - | chr4.1:11418464-11418483 | MS.gene47931:CDS | 30.0% | |
| AAACTAAATGCAACCGAAAA+TGG | + | chr4.1:11420554-11420573 | None:intergenic | 30.0% | |
| AAGCAAAGAAACCTAAAGTT+TGG | - | chr4.1:11421065-11421084 | MS.gene47931:CDS | 30.0% | |
| AATGTGAGTTAAATAACGTG+AGG | + | chr4.1:11420663-11420682 | None:intergenic | 30.0% | |
| AGAGATTAACAATGTTGAAG+AGG | - | chr4.1:11421294-11421313 | MS.gene47931:CDS | 30.0% | |
| AGCAAAGAAACCTAAAGTTT+GGG | - | chr4.1:11421066-11421085 | MS.gene47931:CDS | 30.0% | |
| ATACAGTATATAGGTAGCAA+AGG | - | chr4.1:11419713-11419732 | MS.gene47931:intron | 30.0% | |
| ATAGAAAAAGAAGGTAACCA+AGG | + | chr4.1:11421106-11421125 | None:intergenic | 30.0% | |
| ATGATATGCAATCACAAGTA+AGG | + | chr4.1:11419633-11419652 | None:intergenic | 30.0% | |
| ATTGCAATTGTAGCATTCAA+AGG | + | chr4.1:11420743-11420762 | None:intergenic | 30.0% | |
| CAAATGAAGAAGACTTTGAA+TGG | - | chr4.1:11418510-11418529 | MS.gene47931:CDS | 30.0% | |
| CATAAAATATGCAAAGTTCG+GGG | - | chr4.1:11419135-11419154 | MS.gene47931:CDS | 30.0% | |
| CTTTATCAATAGATCCAAGA+AGG | + | chr4.1:11421144-11421163 | None:intergenic | 30.0% | |
| GACAACATTAACCAACAAAA+CGG | + | chr4.1:11420636-11420655 | None:intergenic | 30.0% | |
| GATGCATATAGTTCATTGTA+AGG | + | chr4.1:11419387-11419406 | None:intergenic | 30.0% | |
| GCATAAAATATGCAAAGTTC+GGG | - | chr4.1:11419134-11419153 | MS.gene47931:CDS | 30.0% | |
| GCATACTTAAGAGTAGAATT+GGG | - | chr4.1:11419972-11419991 | MS.gene47931:intron | 30.0% | |
| GCTAAATACATTGTTGCATT+GGG | - | chr4.1:11420590-11420609 | MS.gene47931:intron | 30.0% | |
| GTGTTTACAAAAAGACTTAG+CGG | + | chr4.1:11419234-11419253 | None:intergenic | 30.0% | |
| TACACGATCAAAAGATTACA+TGG | - | chr4.1:11418455-11418474 | MS.gene47931:CDS | 30.0% | |
| TCAAAGTCTTCTTCATTTGA+TGG | + | chr4.1:11418509-11418528 | None:intergenic | 30.0% | |
| TCTTGTGATTAAGTATGCAT+TGG | + | chr4.1:11419841-11419860 | None:intergenic | 30.0% | |
| TGAGACTAATTGAGTTATGT+GGG | - | chr4.1:11419919-11419938 | MS.gene47931:intron | 30.0% | |
| TGCATACTTAAGAGTAGAAT+TGG | - | chr4.1:11419971-11419990 | MS.gene47931:intron | 30.0% | |
| TTAGAAGGGATACAGTATAT+AGG | - | chr4.1:11419704-11419723 | MS.gene47931:intron | 30.0% | |
| TTGAGACTAATTGAGTTATG+TGG | - | chr4.1:11419918-11419937 | MS.gene47931:intron | 30.0% | |
| TTGATTATTGGATCTTCATG+TGG | - | chr4.1:11420941-11420960 | MS.gene47931:CDS | 30.0% | |
| TTTGAATGCTACAATTGCAA+TGG | - | chr4.1:11420742-11420761 | MS.gene47931:intron | 30.0% | |
| ! | AGCAAATGAAGCATAGTTTT+CGG | + | chr4.1:11420312-11420331 | None:intergenic | 30.0% |
| ! | ATTTTCGTTCTTGTAGCAAT+TGG | - | chr4.1:11420842-11420861 | MS.gene47931:intron | 30.0% |
| ! | GTTCTTTTCTTTGCTTACAT+AGG | - | chr4.1:11420368-11420387 | MS.gene47931:intron | 30.0% |
| ! | GTTTGAATAGAGGATTTTGA+AGG | - | chr4.1:11418928-11418947 | MS.gene47931:CDS | 30.0% |
| ! | TTTTCGTTCTTGTAGCAATT+GGG | - | chr4.1:11420843-11420862 | MS.gene47931:intron | 30.0% |
| !! | GTTATTGTTTGTTATCAGGT+GGG | - | chr4.1:11419943-11419962 | MS.gene47931:intron | 30.0% |
| !! | GTTTTGTTGGTTAATGTTGT+CGG | - | chr4.1:11420635-11420654 | MS.gene47931:intron | 30.0% |
| !! | TAAGTGTTGAAATCGACAAT+AGG | + | chr4.1:11420820-11420839 | None:intergenic | 30.0% |
| !! | TGTTATTGTTTGTTATCAGG+TGG | - | chr4.1:11419942-11419961 | MS.gene47931:intron | 30.0% |
| !!! | TGCATTTAGTTTTGTTGGAT+GGG | - | chr4.1:11420562-11420581 | MS.gene47931:intron | 30.0% |
| !!! | TTGCATTTAGTTTTGTTGGA+TGG | - | chr4.1:11420561-11420580 | MS.gene47931:intron | 30.0% |
| !!! | TTTTTAAGGTGAGTTTTGGA+GGG | + | chr4.1:11419479-11419498 | None:intergenic | 30.0% |
| AAAGAAACCTAAAGTTTGGG+GGG | - | chr4.1:11421069-11421088 | MS.gene47931:CDS | 35.0% | |
| AATGGTTACAATAACTTCCG+TGG | - | chr4.1:11420760-11420779 | MS.gene47931:intron | 35.0% | |
| ACTCATGAATTGAAGGTAAG+CGG | - | chr4.1:11419194-11419213 | MS.gene47931:CDS | 35.0% | |
| ATCAGTGAAAAATGCAACCA+CGG | + | chr4.1:11420780-11420799 | None:intergenic | 35.0% | |
| ATTGATCCTACAAGACCAAT+AGG | + | chr4.1:11420449-11420468 | None:intergenic | 35.0% | |
| ATTGCCTTCATCATCATTGT+TGG | - | chr4.1:11420269-11420288 | MS.gene47931:intron | 35.0% | |
| CAAAGAAACCTAAAGTTTGG+GGG | - | chr4.1:11421068-11421087 | MS.gene47931:CDS | 35.0% | |
| CACAATATGAACCCTGATTA+TGG | - | chr4.1:11420131-11420150 | MS.gene47931:intron | 35.0% | |
| CATAATCAGGGTTCATATTG+TGG | + | chr4.1:11420133-11420152 | None:intergenic | 35.0% | |
| CGGTATGTCTGGATATATTT+AGG | + | chr4.1:11419409-11419428 | None:intergenic | 35.0% | |
| CTGCTCCTATAACATATTCA+AGG | + | chr4.1:11420034-11420053 | None:intergenic | 35.0% | |
| GAAGAAGACTTTGAATGGTT+GGG | - | chr4.1:11418515-11418534 | MS.gene47931:CDS | 35.0% | |
| GCAAAGAAACCTAAAGTTTG+GGG | - | chr4.1:11421067-11421086 | MS.gene47931:CDS | 35.0% | |
| GGCTAAATACATTGTTGCAT+TGG | - | chr4.1:11420589-11420608 | MS.gene47931:intron | 35.0% | |
| GTTTATAGAGCAATGAGTGA+TGG | - | chr4.1:11420971-11420990 | MS.gene47931:CDS | 35.0% | |
| TGAAGAAGACTTTGAATGGT+TGG | - | chr4.1:11418514-11418533 | MS.gene47931:CDS | 35.0% | |
| TGAATGGTTGGGATCTTATT+TGG | - | chr4.1:11418526-11418545 | MS.gene47931:CDS | 35.0% | |
| TGCGTCGTTATTATTCAACT+GGG | - | chr4.1:11420873-11420892 | MS.gene47931:intron | 35.0% | |
| TGCTTCTTATGATGCATCAA+AGG | - | chr4.1:11421231-11421250 | MS.gene47931:CDS | 35.0% | |
| TTCTTATGATGCATCAAAGG+AGG | - | chr4.1:11421234-11421253 | MS.gene47931:CDS | 35.0% | |
| ! | AAATGGTGCATTGACATCAA+TGG | + | chr4.1:11420537-11420556 | None:intergenic | 35.0% |
| ! | ACTTTAGGTTTCTTTGCTTG+TGG | + | chr4.1:11421064-11421083 | None:intergenic | 35.0% |
| ! | CAAATGAAGCATAGTTTTCG+GGG | + | chr4.1:11420310-11420329 | None:intergenic | 35.0% |
| ! | CATATATAAGGTTTGGGATG+TGG | - | chr4.1:11421167-11421186 | MS.gene47931:CDS | 35.0% |
| ! | GCAAATGAAGCATAGTTTTC+GGG | + | chr4.1:11420311-11420330 | None:intergenic | 35.0% |
| ! | GTTAGGATTTTTGTTGCAGA+GGG | + | chr4.1:11420093-11420112 | None:intergenic | 35.0% |
| ! | TATGCTTCATTTGCTCCTTT+TGG | - | chr4.1:11420317-11420336 | MS.gene47931:intron | 35.0% |
| ! | TGATGTCAATGCACCATTTT+CGG | - | chr4.1:11420538-11420557 | MS.gene47931:intron | 35.0% |
| !! | GATCTTATTTGGTTCGGAAT+CGG | - | chr4.1:11418537-11418556 | MS.gene47931:CDS | 35.0% |
| !! | GGGTGTTATTGTTTGTTATC+AGG | - | chr4.1:11419939-11419958 | MS.gene47931:intron | 35.0% |
| !! | TATTGGTCTTGTAGGATCAA+TGG | - | chr4.1:11420448-11420467 | MS.gene47931:intron | 35.0% |
| !!! | ATCATTTTTTTGGTAGTGGC+CGG | + | chr4.1:11419169-11419188 | None:intergenic | 35.0% |
| !!! | GCATTTAGTTTTGTTGGATG+GGG | - | chr4.1:11420563-11420582 | MS.gene47931:intron | 35.0% |
| !!! | GTTTTTAAGGTGAGTTTTGG+AGG | + | chr4.1:11419480-11419499 | None:intergenic | 35.0% |
| !!! | TCGGTTGCATTTAGTTTTGT+TGG | - | chr4.1:11420557-11420576 | MS.gene47931:intron | 35.0% |
| !!! | TGGTTTTGTAGTTCTGCATA+AGG | + | chr4.1:11420517-11420536 | None:intergenic | 35.0% |
| AAAACACCTCTGGTACCAAA+AGG | + | chr4.1:11420335-11420354 | None:intergenic | 40.0% | |
| AACAAGAAGGCAAATACCTC+CGG | + | chr4.1:11421041-11421060 | None:intergenic | 40.0% | |
| AGCAAAGAAAAGAACAGCTG+AGG | + | chr4.1:11420363-11420382 | None:intergenic | 40.0% | |
| AGTAGAATTGGGAGACTTTG+TGG | - | chr4.1:11419983-11420002 | MS.gene47931:intron | 40.0% | |
| ATAGAGCAATGAGTGATGGT+TGG | - | chr4.1:11420975-11420994 | MS.gene47931:CDS | 40.0% | |
| ATGAGGGCTATAACAGCAAT+AGG | + | chr4.1:11420167-11420186 | None:intergenic | 40.0% | |
| CTCATGAATTGAAGGTAAGC+GGG | - | chr4.1:11419195-11419214 | MS.gene47931:CDS | 40.0% | |
| CTCTTGTTCATGAGAAAACC+GGG | - | chr4.1:11420714-11420733 | MS.gene47931:intron | 40.0% | |
| CTTTGATGCAGTGTCAACTA+TGG | - | chr4.1:11420391-11420410 | MS.gene47931:intron | 40.0% | |
| GAAGGTAACCAAGGAACTAA+AGG | + | chr4.1:11421097-11421116 | None:intergenic | 40.0% | |
| GACAGCATACGACAAAACAA+CGG | + | chr4.1:11418628-11418647 | None:intergenic | 40.0% | |
| GCGTCGTTATTATTCAACTG+GGG | - | chr4.1:11420874-11420893 | MS.gene47931:intron | 40.0% | |
| GCTCTTGTTCATGAGAAAAC+CGG | - | chr4.1:11420713-11420732 | MS.gene47931:intron | 40.0% | |
| GGTCAAGATGACCATAATCA+GGG | + | chr4.1:11420145-11420164 | None:intergenic | 40.0% | |
| GGTTGAAAGCAGACATACTA+TGG | - | chr4.1:11421255-11421274 | MS.gene47931:CDS | 40.0% | |
| GTGCGTCGTTATTATTCAAC+TGG | - | chr4.1:11420872-11420891 | MS.gene47931:intron | 40.0% | |
| GTTGAAGAGAGAAGAGATTC+TGG | + | chr4.1:11420219-11420238 | None:intergenic | 40.0% | |
| TATGTTTCCAGCAGCTATGA+AGG | + | chr4.1:11420009-11420028 | None:intergenic | 40.0% | |
| TCATGAACAAGAGCAAACCA+AGG | + | chr4.1:11420707-11420726 | None:intergenic | 40.0% | |
| TCATGAATTGAAGGTAAGCG+GGG | - | chr4.1:11419196-11419215 | MS.gene47931:CDS | 40.0% | |
| TCTTTGCTTGTGGAACAAGA+AGG | + | chr4.1:11421054-11421073 | None:intergenic | 40.0% | |
| TGAGGGCTATAACAGCAATA+GGG | + | chr4.1:11420166-11420185 | None:intergenic | 40.0% | |
| TGTTATTCGTACGGTATGTC+TGG | + | chr4.1:11419420-11419439 | None:intergenic | 40.0% | |
| ! | CGTTAGGATTTTTGTTGCAG+AGG | + | chr4.1:11420094-11420113 | None:intergenic | 40.0% |
| ! | GGTTGGGATCTTATTTGGTT+CGG | - | chr4.1:11418531-11418550 | MS.gene47931:CDS | 40.0% |
| ! | TAGGCCAACAATGATGATGA+AGG | + | chr4.1:11420276-11420295 | None:intergenic | 40.0% |
| !! | GAATAGAGGATTTTGAAGGG+TGG | - | chr4.1:11418932-11418951 | MS.gene47931:CDS | 40.0% |
| !! | GACATTCCTATTGGTCTTGT+AGG | - | chr4.1:11420440-11420459 | MS.gene47931:intron | 40.0% |
| !! | TGAGGCTTTAAAAACACCTC+TGG | + | chr4.1:11420345-11420364 | None:intergenic | 40.0% |
| !!! | TAGTTTTGTTGGATGGGGAT+GGG | - | chr4.1:11420568-11420587 | MS.gene47931:intron | 40.0% |
| !!! | TCATTTTTTTGGTAGTGGCC+GGG | + | chr4.1:11419168-11419187 | None:intergenic | 40.0% |
| !!! | TTAGTTTTGTTGGATGGGGA+TGG | - | chr4.1:11420567-11420586 | MS.gene47931:intron | 40.0% |
| AAAACCAAGACCGCCAGAAA+GGG | + | chr4.1:11419300-11419319 | None:intergenic | 45.0% | |
| CAATAGGAATGTCTCTGCCA+GGG | + | chr4.1:11420433-11420452 | None:intergenic | 45.0% | |
| CAGTGTAATAAACCTGCGAC+AGG | + | chr4.1:11418708-11418727 | None:intergenic | 45.0% | |
| GAGATGGGTACAGAAAACAG+TGG | - | chr4.1:11418333-11418352 | MS.gene47931:CDS | 45.0% | |
| GCAATGAGTGATGGTTGGAT+TGG | - | chr4.1:11420980-11420999 | MS.gene47931:CDS | 45.0% | |
| GGGTCAAGATGACCATAATC+AGG | + | chr4.1:11420146-11420165 | None:intergenic | 45.0% | |
| TCTGGTGCTTAAGACTGCAA+GGG | + | chr4.1:11420201-11420220 | None:intergenic | 45.0% | |
| TGAACAAGAGCAAACCAAGG+AGG | + | chr4.1:11420704-11420723 | None:intergenic | 45.0% | |
| TGAGCTTAGCTCAGTTGGTT+GGG | - | chr4.1:11419106-11419125 | MS.gene47931:CDS | 45.0% | |
| TTCTGGTGCTTAAGACTGCA+AGG | + | chr4.1:11420202-11420221 | None:intergenic | 45.0% | |
| ! | AGGATTTTTGTTGCAGAGGG+TGG | + | chr4.1:11420090-11420109 | None:intergenic | 45.0% |
| ! | ATAAGGTTTGGGATGTGGTC+AGG | - | chr4.1:11421172-11421191 | MS.gene47931:CDS | 45.0% |
| ! | GAGTGATGGTTGGATTGGAT+GGG | - | chr4.1:11420985-11421004 | MS.gene47931:CDS | 45.0% |
| ! | GTTTTGTCGTATGCTGTCTC+TGG | - | chr4.1:11418630-11418649 | MS.gene47931:CDS | 45.0% |
| ! | TAAGGTTTGGGATGTGGTCA+GGG | - | chr4.1:11421173-11421192 | MS.gene47931:CDS | 45.0% |
| ! | TCAGCACCATTGTGGCTTTT+AGG | - | chr4.1:11421013-11421032 | MS.gene47931:CDS | 45.0% |
| ! | TGAGTGATGGTTGGATTGGA+TGG | - | chr4.1:11420984-11421003 | MS.gene47931:CDS | 45.0% |
| ! | TTCCGGCATTTTCGTTCTCA+CGG | - | chr4.1:11418572-11418591 | MS.gene47931:CDS | 45.0% |
| ! | TTTGCTCCTTTTGGTACCAG+AGG | - | chr4.1:11420326-11420345 | MS.gene47931:intron | 45.0% |
| !! | AAAGGTACCCCCCAAACTTT+AGG | + | chr4.1:11421079-11421098 | None:intergenic | 45.0% |
| !! | CCATTGTGGCTTTTAGGAAC+CGG | - | chr4.1:11421019-11421038 | MS.gene47931:CDS | 45.0% |
| !! | GTTGCATTGGGAGCATTGAA+GGG | - | chr4.1:11420602-11420621 | MS.gene47931:intron | 45.0% |
| !! | TGAAGCATAGTTTTCGGGGT+TGG | + | chr4.1:11420306-11420325 | None:intergenic | 45.0% |
| !! | TGTAGCATTCAAAGGTGTCC+CGG | + | chr4.1:11420735-11420754 | None:intergenic | 45.0% |
| !! | TGTTGCATTGGGAGCATTGA+AGG | - | chr4.1:11420601-11420620 | MS.gene47931:intron | 45.0% |
| !!! | CATTTTTTTGGTAGTGGCCG+GGG | + | chr4.1:11419167-11419186 | None:intergenic | 45.0% |
| !!! | GCCAGGGTTTTTAGTTTCCT+CGG | + | chr4.1:11420417-11420436 | None:intergenic | 45.0% |
| !!! | TATAAAATAATTTACATTTT+TGG | - | chr4.1:11419587-11419606 | MS.gene47931:CDS | 5.0% |
| AAACCAAGACCGCCAGAAAG+GGG | + | chr4.1:11419299-11419318 | None:intergenic | 50.0% | |
| AAAGTTCGGGGTTCAAACCC+CGG | - | chr4.1:11419147-11419166 | MS.gene47931:CDS | 50.0% | |
| ACCCGTGAGAACGAAAATGC+CGG | + | chr4.1:11418577-11418596 | None:intergenic | 50.0% | |
| CAAAACCAAGACCGCCAGAA+AGG | + | chr4.1:11419301-11419320 | None:intergenic | 50.0% | |
| CCAATAGGAATGTCTCTGCC+AGG | + | chr4.1:11420434-11420453 | None:intergenic | 50.0% | |
| CCGGTTCCTAAAAGCCACAA+TGG | + | chr4.1:11421022-11421041 | None:intergenic | 50.0% | |
| CCTGGCAGAGACATTCCTAT+TGG | - | chr4.1:11420431-11420450 | MS.gene47931:intron | 50.0% | |
| CTGTTACACTGAGTTCGCTG+TGG | - | chr4.1:11418677-11418696 | MS.gene47931:CDS | 50.0% | |
| GCATACGACAAAACAACGGC+AGG | + | chr4.1:11418624-11418643 | None:intergenic | 50.0% | |
| GCCGAGGAAACTAAAAACCC+TGG | - | chr4.1:11420413-11420432 | MS.gene47931:intron | 50.0% | |
| GTACTCACATGATGCCTCCT+TGG | - | chr4.1:11420687-11420706 | MS.gene47931:intron | 50.0% | |
| GTGAGCTTAGCTCAGTTGGT+TGG | - | chr4.1:11419105-11419124 | MS.gene47931:CDS | 50.0% | |
| GTTGCAGAGGGTGGCAAAAT+AGG | + | chr4.1:11420081-11420100 | None:intergenic | 50.0% | |
| TTTGTGGCCTTCATAGCTGC+TGG | - | chr4.1:11419999-11420018 | MS.gene47931:intron | 50.0% | |
| ! | GGGAATGACGACCGTTTTGT+TGG | - | chr4.1:11420622-11420641 | MS.gene47931:intron | 50.0% |
| ! | GGGCATTTTCAGCACCATTG+TGG | - | chr4.1:11421005-11421024 | MS.gene47931:CDS | 50.0% |
| ! | TCCGGCATTTTCGTTCTCAC+GGG | - | chr4.1:11418573-11418592 | MS.gene47931:CDS | 50.0% |
| !! | TTGTGGCTTTTAGGAACCGG+AGG | - | chr4.1:11421022-11421041 | MS.gene47931:CDS | 50.0% |
| !! | TTTCGGGGTTGGCGTTGATT+AGG | + | chr4.1:11420295-11420314 | None:intergenic | 50.0% |
| AAGGGTGGCGATGGCTATGA+GGG | + | chr4.1:11420183-11420202 | None:intergenic | 55.0% | |
| CCAACTGAGCTAAGCTCACG+AGG | + | chr4.1:11419104-11419123 | None:intergenic | 55.0% | |
| CCTCGTGAGCTTAGCTCAGT+TGG | - | chr4.1:11419101-11419120 | MS.gene47931:CDS | 55.0% | |
| GAAAATGCCGGAACCGACGA+CGG | + | chr4.1:11418565-11418584 | None:intergenic | 55.0% | |
| GCAGAGGGTGGCAAAATAGG+AGG | + | chr4.1:11420078-11420097 | None:intergenic | 55.0% | |
| GCTGTGGAAATTCCTGTCGC+AGG | - | chr4.1:11418693-11418712 | MS.gene47931:CDS | 55.0% | |
| GGAGGTCCATGATCGAGCTA+CGG | + | chr4.1:11420060-11420079 | None:intergenic | 55.0% | |
| GGTGCTTAAGACTGCAAGGG+TGG | + | chr4.1:11420198-11420217 | None:intergenic | 55.0% | |
| TAAGACTGCAAGGGTGGCGA+TGG | + | chr4.1:11420192-11420211 | None:intergenic | 55.0% | |
| TGCAGTGTCAACTATGGCCG+AGG | - | chr4.1:11420397-11420416 | MS.gene47931:intron | 55.0% | |
| !! | GGGGGGTACCTTTAGTTCCT+TGG | - | chr4.1:11421086-11421105 | MS.gene47931:CDS | 55.0% |
| CAAGGGTGGCGATGGCTATG+AGG | + | chr4.1:11420184-11420203 | None:intergenic | 60.0% | |
| CACCTGTCTCCCCTTTCTGG+CGG | - | chr4.1:11419287-11419306 | MS.gene47931:CDS | 60.0% | |
| CACGGGTCTTGAAGCTCGTG+AGG | - | chr4.1:11418590-11418609 | MS.gene47931:CDS | 60.0% | |
| CAGCAGCCGTAGCTCGATCA+TGG | - | chr4.1:11420051-11420070 | MS.gene47931:intron | 60.0% | |
| CTTGAAGCTCGTGAGGAGGC+TGG | - | chr4.1:11418597-11418616 | MS.gene47931:CDS | 60.0% | |
| GCCAGAAAGGGGAGACAGGT+GGG | + | chr4.1:11419288-11419307 | None:intergenic | 60.0% | |
| GGGTCTTGAAGCTCGTGAGG+AGG | - | chr4.1:11418593-11418612 | MS.gene47931:CDS | 60.0% | |
| TCCCACCTGTCTCCCCTTTC+TGG | - | chr4.1:11419284-11419303 | MS.gene47931:CDS | 60.0% | |
| ! | TCTCCCCTTTCTGGCGGTCT+TGG | - | chr4.1:11419293-11419312 | MS.gene47931:CDS | 60.0% |
| CGCCAGAAAGGGGAGACAGG+TGG | + | chr4.1:11419289-11419308 | None:intergenic | 65.0% | |
| GACCGCCAGAAAGGGGAGAC+AGG | + | chr4.1:11419292-11419311 | None:intergenic | 65.0% | |
| TTCGGAATCGGCGCCGTCGT+CGG | - | chr4.1:11418549-11418568 | MS.gene47931:CDS | 65.0% | |
| !! | ATCGGCGCCGTCGTCGGTTC+CGG | - | chr4.1:11418555-11418574 | MS.gene47931:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 11418324 | 11421330 | 11418324 | ID=MS.gene47931 |
| chr4.1 | mRNA | 11418324 | 11421330 | 11418324 | ID=MS.gene47931.t1;Parent=MS.gene47931 |
| chr4.1 | exon | 11420940 | 11421330 | 11420940 | ID=MS.gene47931.t1.exon1;Parent=MS.gene47931.t1 |
| chr4.1 | CDS | 11420940 | 11421330 | 11420940 | ID=cds.MS.gene47931.t1;Parent=MS.gene47931.t1 |
| chr4.1 | exon | 11418324 | 11419693 | 11418324 | ID=MS.gene47931.t1.exon2;Parent=MS.gene47931.t1 |
| chr4.1 | CDS | 11418324 | 11419693 | 11418324 | ID=cds.MS.gene47931.t1;Parent=MS.gene47931.t1 |
| Gene Sequence |
| Protein sequence |
