Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49958.t1 | XP_013469863.1 | 90.5 | 347 | 33 | 0 | 1 | 347 | 1 | 347 | 6.40E-176 | 626.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49958.t1 | Q5T280 | 47.0 | 300 | 153 | 4 | 49 | 344 | 74 | 371 | 1.1e-67 | 258.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49958.t1 | A0A072VQH5 | 90.5 | 347 | 33 | 0 | 1 | 347 | 1 | 347 | 4.6e-176 | 626.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene49958 | MS.gene90954 | PPI |
| MS.gene49958 | MS.gene000714 | PPI |
| MS.gene08205 | MS.gene49958 | PPI |
| MS.gene49958 | MS.gene038800 | PPI |
| MS.gene49958 | MS.gene51868 | PPI |
| MS.gene49958 | MS.gene044498 | PPI |
| MS.gene49958 | MS.gene033017 | PPI |
| MS.gene49958 | MS.gene067809 | PPI |
| MS.gene49958 | MS.gene90957 | PPI |
| MS.gene49958 | MS.gene52097 | PPI |
| MS.gene49958 | MS.gene057730 | PPI |
| MS.gene68979 | MS.gene49958 | PPI |
| MS.gene49958 | MS.gene003501 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49958.t1 | MTR_1g105065 | 95.389 | 347 | 16 | 0 | 1 | 347 | 1 | 347 | 0.0 | 665 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49958.t1 | AT5G19300 | 67.834 | 314 | 97 | 3 | 34 | 345 | 84 | 395 | 2.01e-154 | 439 |
Find 95 sgRNAs with CRISPR-Local
Find 376 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCAGCATTGCTCGGCTTAT+TGG | 0.172731 | 1.1:+75253391 | None:intergenic |
| TCATCGATGTTGCCATTTAT+TGG | 0.179774 | 1.1:+75258610 | None:intergenic |
| AGTTGATGTTGGCTTATTTA+AGG | 0.186095 | 1.1:-75256468 | MS.gene49958:intron |
| TGAGGAAGATGATAACTTTA+AGG | 0.223818 | 1.1:-75254108 | MS.gene49958:intron |
| CCATTTATTGGGTTTGGTTC+AGG | 0.241598 | 1.1:+75258622 | None:intergenic |
| CATGGGCGCCAACCGCAATT+TGG | 0.243566 | 1.1:-75255480 | MS.gene49958:CDS |
| GCCAACCGCAATTTGGATTA+TGG | 0.253118 | 1.1:-75255473 | MS.gene49958:intron |
| TTCTTCCGGGTTCAAGTATT+TGG | 0.255682 | 1.1:+75255516 | None:intergenic |
| CATCGATGTTGCCATTTATT+GGG | 0.278770 | 1.1:+75258611 | None:intergenic |
| TAGGGAAGAAGGAGCATATT+GGG | 0.306398 | 1.1:-75255119 | MS.gene49958:CDS |
| CCTGAACCAAACCCAATAAA+TGG | 0.310870 | 1.1:-75258622 | MS.gene49958:CDS |
| CCCACTCATGTTTGCGCAAA+TGG | 0.317819 | 1.1:+75257885 | None:intergenic |
| ACCAATAAGCCGAGCAATGC+TGG | 0.317878 | 1.1:-75253392 | MS.gene49958:CDS |
| AATAAAAGTAATACAGATAA+AGG | 0.356965 | 1.1:-75258170 | MS.gene49958:CDS |
| GGTGACAGTAACTCTTCTTC+CGG | 0.357114 | 1.1:+75255502 | None:intergenic |
| TTATTCCGCACCGGATAATT+CGG | 0.364342 | 1.1:-75258147 | MS.gene49958:CDS |
| TTTAAATACATGTCCACATC+AGG | 0.364943 | 1.1:-75253601 | MS.gene49958:CDS |
| AGACATTTATTGATTGCCTT+TGG | 0.377473 | 1.1:-75254158 | MS.gene49958:CDS |
| TGCTCCTTCTTCCCTAGGCT+TGG | 0.378296 | 1.1:+75255126 | None:intergenic |
| CTTTGGCGGATTGGCTGGTT+TGG | 0.380876 | 1.1:-75254141 | MS.gene49958:CDS |
| TTGCTCGGCTTATTGGTTCT+TGG | 0.394746 | 1.1:+75253398 | None:intergenic |
| GCATAACAGCTTAAGATTTG+TGG | 0.397795 | 1.1:-75258039 | MS.gene49958:intron |
| ATGTTGCCATTTATTGGGTT+TGG | 0.399709 | 1.1:+75258616 | None:intergenic |
| AGCTTGAAATACCATCCTTC+AGG | 0.412173 | 1.1:-75254863 | MS.gene49958:intron |
| TTGAGACACCTCAGTATTTG+AGG | 0.414769 | 1.1:-75258079 | MS.gene49958:CDS |
| CAATATGCTCCTTCTTCCCT+AGG | 0.415928 | 1.1:+75255121 | None:intergenic |
| GTGACAGTAACTCTTCTTCC+GGG | 0.421324 | 1.1:+75255503 | None:intergenic |
| CTAGGGAAGAAGGAGCATAT+TGG | 0.429341 | 1.1:-75255120 | MS.gene49958:CDS |
| ATTGCCTTTGGCGGATTGGC+TGG | 0.434730 | 1.1:-75254146 | MS.gene49958:CDS |
| ACATGAGTGGGGTCCGTATC+GGG | 0.438663 | 1.1:-75257873 | MS.gene49958:CDS |
| TATTGGGTTTGGTTCAGGTT+CGG | 0.453688 | 1.1:+75258627 | None:intergenic |
| TTCGGATGATGAAAGTAGTT+CGG | 0.454347 | 1.1:-75258129 | MS.gene49958:CDS |
| ATTGATTGCCTTTGGCGGAT+TGG | 0.456827 | 1.1:-75254150 | MS.gene49958:CDS |
| AATCTTAAGCTGTTATGCAT+TGG | 0.463655 | 1.1:+75258044 | None:intergenic |
| CAACTCTTGAACTCGCTACT+CGG | 0.468723 | 1.1:-75258483 | MS.gene49958:CDS |
| CAAATTGCGGTTGGCGCCCA+TGG | 0.469631 | 1.1:+75255481 | None:intergenic |
| CATTTATTGATTGCCTTTGG+CGG | 0.469674 | 1.1:-75254155 | MS.gene49958:CDS |
| CATTAGCAACCTCATTGATT+CGG | 0.476477 | 1.1:+75258310 | None:intergenic |
| CTTTCATCATCCGAATTATC+CGG | 0.480182 | 1.1:+75258137 | None:intergenic |
| AGTTGGAACGTTGTCAATGA+TGG | 0.483106 | 1.1:+75258501 | None:intergenic |
| ACCATAATCCAAATTGCGGT+TGG | 0.503863 | 1.1:+75255472 | None:intergenic |
| AACATGAGTGGGGTCCGTAT+CGG | 0.504197 | 1.1:-75257874 | MS.gene49958:CDS |
| AAGAAAGACATTCAAACTCC+GGG | 0.512731 | 1.1:-75256499 | MS.gene49958:CDS |
| TCATCCAAGCCTAGGGAAGA+AGG | 0.513329 | 1.1:-75255130 | MS.gene49958:CDS |
| AACATCAACTAGCGTTGCCC+CGG | 0.521910 | 1.1:+75256481 | None:intergenic |
| AAAGAAAGACATTCAAACTC+CGG | 0.529826 | 1.1:-75256500 | MS.gene49958:CDS |
| GGGGCAACGCTAGTTGATGT+TGG | 0.530539 | 1.1:-75256479 | MS.gene49958:CDS |
| TTGTCTCATCATCCAAGCCT+AGG | 0.537203 | 1.1:-75255138 | MS.gene49958:CDS |
| CCATTTGCGCAAACATGAGT+GGG | 0.538873 | 1.1:-75257885 | MS.gene49958:CDS |
| AACTCTTGAACTCGCTACTC+GGG | 0.543550 | 1.1:-75258482 | MS.gene49958:intron |
| GCAAATGGTGTGGAGCATCA+AGG | 0.551811 | 1.1:+75257900 | None:intergenic |
| GATTACCATAATCCAAATTG+CGG | 0.555577 | 1.1:+75255468 | None:intergenic |
| CCAATAAGCCGAGCAATGCT+GGG | 0.556012 | 1.1:-75253391 | MS.gene49958:CDS |
| AACGTTGTCAATGATGGAAG+CGG | 0.563328 | 1.1:+75258507 | None:intergenic |
| AAAGACCTACCTTCCCGATA+CGG | 0.564821 | 1.1:+75257860 | None:intergenic |
| GGTGGCTATGATTGTATAGT+CGG | 0.570409 | 1.1:-75254921 | MS.gene49958:CDS |
| ATACTCAACCCAGCATTGCT+CGG | 0.573303 | 1.1:+75253383 | None:intergenic |
| CAAATGGTGTGGAGCATCAA+GGG | 0.574406 | 1.1:+75257901 | None:intergenic |
| ATTGTTCGACTCCCCTGATG+TGG | 0.576891 | 1.1:+75253588 | None:intergenic |
| ACGTTGTCAATGATGGAAGC+GGG | 0.580301 | 1.1:+75258508 | None:intergenic |
| GAGGTGTCTCAAGATACTGC+AGG | 0.581605 | 1.1:+75258090 | None:intergenic |
| GGGAACAGCTATGCTGACAG+TGG | 0.586260 | 1.1:+75258528 | None:intergenic |
| GAAGAAGCAGCGGCTGACAA+CGG | 0.589419 | 1.1:-75258659 | MS.gene49958:CDS |
| CGAGTAGCGAGTTCAAGAGT+TGG | 0.592023 | 1.1:+75258484 | None:intergenic |
| TGGTTTGGAAGAGAGTATTG+AGG | 0.599758 | 1.1:-75254126 | MS.gene49958:CDS |
| AGATAAAGGTTATTCCGCAC+CGG | 0.600115 | 1.1:-75258156 | MS.gene49958:CDS |
| TGTCTCATCATCCAAGCCTA+GGG | 0.600351 | 1.1:-75255137 | MS.gene49958:CDS |
| ACCATTTGCGCAAACATGAG+TGG | 0.600994 | 1.1:-75257886 | MS.gene49958:CDS |
| AAACATGAGCACCTGAAGGA+TGG | 0.601594 | 1.1:+75254852 | None:intergenic |
| GACACCTCAGTATTTGAGGA+AGG | 0.603915 | 1.1:-75258075 | MS.gene49958:CDS |
| TTAAATACATGTCCACATCA+GGG | 0.610146 | 1.1:-75253600 | MS.gene49958:CDS |
| AAGAAGAGTTACTGTCACCA+TGG | 0.613544 | 1.1:-75255498 | MS.gene49958:CDS |
| AGAAGAGTTACTGTCACCAT+GGG | 0.613774 | 1.1:-75255497 | MS.gene49958:CDS |
| ATTTAATGAATGTACATACA+AGG | 0.623297 | 1.1:-75255059 | MS.gene49958:intron |
| TCATGTTTGCGCAAATGGTG+TGG | 0.628666 | 1.1:+75257890 | None:intergenic |
| GGAACAGCTATGCTGACAGT+GGG | 0.628924 | 1.1:+75258529 | None:intergenic |
| GATGATGAGACAACCTCGCG+TGG | 0.636166 | 1.1:+75255148 | None:intergenic |
| CAAACCAGCCAATCCGCCAA+AGG | 0.636167 | 1.1:+75254142 | None:intergenic |
| TCATCTAGATTTACCACGCG+AGG | 0.636923 | 1.1:-75255161 | MS.gene49958:intron |
| TAAATACATGTCCACATCAG+GGG | 0.639657 | 1.1:-75253599 | MS.gene49958:CDS |
| AAATGGTGTGGAGCATCAAG+GGG | 0.640817 | 1.1:+75257902 | None:intergenic |
| AGGGAAGAAGGAGCATATTG+GGG | 0.647186 | 1.1:-75255118 | MS.gene49958:CDS |
| ATCATCCGAATTATCCGGTG+CGG | 0.653728 | 1.1:+75258142 | None:intergenic |
| GAGTGGGGTCCGTATCGGGA+AGG | 0.653942 | 1.1:-75257869 | MS.gene49958:intron |
| ATAGTCGGTACCTCTGAGCA+TGG | 0.660543 | 1.1:-75254906 | MS.gene49958:CDS |
| TGGTGTGGAGCATCAAGGGG+TGG | 0.663049 | 1.1:+75257905 | None:intergenic |
| TGGGGAAGAAGAAGAAGCAG+CGG | 0.683363 | 1.1:-75258669 | MS.gene49958:CDS |
| TAAGAAGAACAAATCAAACA+AGG | 0.684805 | 1.1:-75258557 | MS.gene49958:CDS |
| AGAGCCTTCCTCAAATACTG+AGG | 0.688667 | 1.1:+75258071 | None:intergenic |
| GAGTCGAACAATTCGAACAG+AGG | 0.692468 | 1.1:-75253577 | MS.gene49958:intron |
| GTTGACCAAATACTTGAACC+CGG | 0.705221 | 1.1:-75255521 | MS.gene49958:CDS |
| ATTGATTCGGAAAATAGTCG+CGG | 0.716272 | 1.1:+75258323 | None:intergenic |
| AATAATCTGACCATGCTCAG+AGG | 0.716636 | 1.1:+75254896 | None:intergenic |
| AGAAAGACATTCAAACTCCG+GGG | 0.724344 | 1.1:-75256498 | MS.gene49958:CDS |
| CATTTGCGCAAACATGAGTG+GGG | 0.732835 | 1.1:-75257884 | MS.gene49958:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGAAAATAAAACTTTAAA+AGG | + | chr1.1:75257747-75257766 | None:intergenic | 10.0% |
| !! | AAGTAAAAAAAGTAAAAAAT+TGG | + | chr1.1:75255646-75255665 | None:intergenic | 10.0% |
| !! | AAATACAAAGAGAATTTAAA+GGG | + | chr1.1:75255669-75255688 | None:intergenic | 15.0% |
| !! | AATAAAAGTAATACAGATAA+AGG | - | chr1.1:75253887-75253906 | MS.gene49958:intron | 15.0% |
| !! | ATTATTATTGTTAAATTGCT+TGG | - | chr1.1:75257249-75257268 | MS.gene49958:intron | 15.0% |
| !! | CAAATTAAAATCAAAGAAAA+GGG | + | chr1.1:75255878-75255897 | None:intergenic | 15.0% |
| !! | TAATAATGTTACTATTAACT+AGG | - | chr1.1:75256458-75256477 | MS.gene49958:intron | 15.0% |
| !! | TCAAATTAAAATCAAAGAAA+AGG | + | chr1.1:75255879-75255898 | None:intergenic | 15.0% |
| !! | TTATTATTGTTAAATTGCTT+GGG | - | chr1.1:75257250-75257269 | MS.gene49958:intron | 15.0% |
| !!! | AATGAAAGTAATTTTGAAAT+GGG | + | chr1.1:75253603-75253622 | None:intergenic | 15.0% |
| !!! | AGCAATTTTTTTTTTAAACT+CGG | + | chr1.1:75256356-75256375 | None:intergenic | 15.0% |
| !!! | TAAAATTAACGTTTTTGTTA+TGG | + | chr1.1:75253627-75253646 | None:intergenic | 15.0% |
| !!! | TAATTTATAATTTTATGCTC+AGG | - | chr1.1:75254363-75254382 | MS.gene49958:intron | 15.0% |
| !!! | TATATTCTATTTTTCTTGTT+AGG | - | chr1.1:75254517-75254536 | MS.gene49958:intron | 15.0% |
| !!! | TTTCATATTTTAAATTTAGC+CGG | + | chr1.1:75257800-75257819 | None:intergenic | 15.0% |
| !! | AAAAATGTAAAGGAAATTCA+TGG | - | chr1.1:75254256-75254275 | MS.gene49958:intron | 20.0% |
| !! | AAAATTTATATTTAGCACCA+TGG | + | chr1.1:75258368-75258387 | None:intergenic | 20.0% |
| !! | AAAGAAAACTTCAAAATCAT+AGG | + | chr1.1:75256754-75256773 | None:intergenic | 20.0% |
| !! | AACATTATTAGAACAAAATC+TGG | + | chr1.1:75256448-75256467 | None:intergenic | 20.0% |
| !! | ATAGATTAATAGGAAAACAA+TGG | + | chr1.1:75257355-75257374 | None:intergenic | 20.0% |
| !! | ATATATTTCAAAACTTTCCA+TGG | + | chr1.1:75254557-75254576 | None:intergenic | 20.0% |
| !! | ATATTAGAATATTCTTGAAC+AGG | - | chr1.1:75256104-75256123 | MS.gene49958:intron | 20.0% |
| !! | ATCTAAATCACAATATAACA+AGG | + | chr1.1:75254439-75254458 | None:intergenic | 20.0% |
| !! | ATTTAATGAATGTACATACA+AGG | - | chr1.1:75256998-75257017 | MS.gene49958:intron | 20.0% |
| !! | ATTTATAGATTATTAGAGTG+TGG | - | chr1.1:75255927-75255946 | MS.gene49958:intron | 20.0% |
| !! | CATTATATATGTGATTATTG+CGG | - | chr1.1:75257985-75258004 | MS.gene49958:intron | 20.0% |
| !! | CGAAAAGAAAATAGATTAAT+AGG | + | chr1.1:75257365-75257384 | None:intergenic | 20.0% |
| !! | GAAATACAAAGAGAATTTAA+AGG | + | chr1.1:75255670-75255689 | None:intergenic | 20.0% |
| !! | GAGTTTAAAAAAAAAATTGC+TGG | - | chr1.1:75256355-75256374 | MS.gene49958:intron | 20.0% |
| !! | TCTAAATCACAATATAACAA+GGG | + | chr1.1:75254438-75254457 | None:intergenic | 20.0% |
| !! | TGAACAAGTTTATTAATTCT+GGG | - | chr1.1:75257311-75257330 | MS.gene49958:intron | 20.0% |
| !! | TTATTTATGTGTGTATGAAT+AGG | - | chr1.1:75253850-75253869 | MS.gene49958:intron | 20.0% |
| !!! | AAATCTGGAATAAATTCATT+TGG | - | chr1.1:75254991-75255010 | MS.gene49958:intron | 20.0% |
| !!! | ATGATTTTGAAGTTTTCTTT+TGG | - | chr1.1:75256754-75256773 | MS.gene49958:intron | 20.0% |
| !!! | ATGGAAAGTTTTGAAATATA+TGG | - | chr1.1:75254556-75254575 | MS.gene49958:intron | 20.0% |
| !!! | CAATGAAAGTAATTTTGAAA+TGG | + | chr1.1:75253604-75253623 | None:intergenic | 20.0% |
| !!! | GAGGATTCATTTTTTTTTTA+GGG | + | chr1.1:75258593-75258612 | None:intergenic | 20.0% |
| !!! | TGAGGATTCATTTTTTTTTT+AGG | + | chr1.1:75258594-75258613 | None:intergenic | 20.0% |
| !!! | TGATTTTGAAGTTTTCTTTT+GGG | - | chr1.1:75256755-75256774 | MS.gene49958:intron | 20.0% |
| !!! | TTTTTTAGGGAAAAAATATG+AGG | + | chr1.1:75258580-75258599 | None:intergenic | 20.0% |
| ! | AAAAAATGCCAAATTGAAAG+AGG | + | chr1.1:75256698-75256717 | None:intergenic | 25.0% |
| ! | AAATGAGTTTATGGAAACTT+TGG | - | chr1.1:75255200-75255219 | MS.gene49958:intron | 25.0% |
| ! | AAATTATCAGTACCAATCAT+TGG | + | chr1.1:75254349-75254368 | None:intergenic | 25.0% |
| ! | AAATTCATTTGGTTGAAAGT+TGG | - | chr1.1:75255002-75255021 | MS.gene49958:intron | 25.0% |
| ! | AAATTTATGGAATCTCTGAT+TGG | + | chr1.1:75258026-75258045 | None:intergenic | 25.0% |
| ! | AACAGTAAATGAAACTATAG+TGG | - | chr1.1:75256151-75256170 | MS.gene49958:intron | 25.0% |
| ! | AAGGAAAATGTAAGAGAAAT+AGG | + | chr1.1:75255855-75255874 | None:intergenic | 25.0% |
| ! | AATAAATTAATCATCGCAAC+TGG | + | chr1.1:75255238-75255257 | None:intergenic | 25.0% |
| ! | AATAGGCTATGGATATTAAA+AGG | + | chr1.1:75257055-75257074 | None:intergenic | 25.0% |
| ! | ACATGAGATTAAAGTTATCA+GGG | - | chr1.1:75257471-75257490 | MS.gene49958:intron | 25.0% |
| ! | AGAAAGGAAAAAGATTAAAC+CGG | + | chr1.1:75255346-75255365 | None:intergenic | 25.0% |
| ! | AGAATATACGAAAACAATAC+TGG | + | chr1.1:75254505-75254524 | None:intergenic | 25.0% |
| ! | AGAATTTCTAATTTCTGTAG+TGG | - | chr1.1:75254230-75254249 | MS.gene49958:intron | 25.0% |
| ! | ATAAAACTACAATGCTATAG+AGG | - | chr1.1:75254694-75254713 | MS.gene49958:intron | 25.0% |
| ! | ATACATTTCACAAGATTTCT+TGG | - | chr1.1:75255619-75255638 | MS.gene49958:intron | 25.0% |
| ! | ATATTGTCATTGTGTTATCA+AGG | + | chr1.1:75256783-75256802 | None:intergenic | 25.0% |
| ! | ATCAGTTGCATTATAATGTT+TGG | + | chr1.1:75257711-75257730 | None:intergenic | 25.0% |
| ! | ATGATAGGAAAAACAATTGT+GGG | + | chr1.1:75257601-75257620 | None:intergenic | 25.0% |
| ! | ATTCAGCTTAAGAAAAAGAA+AGG | - | chr1.1:75258341-75258360 | MS.gene49958:CDS | 25.0% |
| ! | CATAAATTTGACAGAATCAT+CGG | - | chr1.1:75258037-75258056 | MS.gene49958:intron | 25.0% |
| ! | CATGTAAAAGATATGAAATC+TGG | - | chr1.1:75254976-75254995 | MS.gene49958:intron | 25.0% |
| ! | CATTGCAATAATAACTTCTT+AGG | - | chr1.1:75255524-75255543 | MS.gene49958:CDS | 25.0% |
| ! | CGCAATAATCACATATATAA+TGG | + | chr1.1:75257987-75258006 | None:intergenic | 25.0% |
| ! | CTAAATCACAATATAACAAG+GGG | + | chr1.1:75254437-75254456 | None:intergenic | 25.0% |
| ! | GGAAGAATGATTTAAATTCT+GGG | - | chr1.1:75254277-75254296 | MS.gene49958:intron | 25.0% |
| ! | GTGAACAAGTTTATTAATTC+TGG | - | chr1.1:75257310-75257329 | MS.gene49958:intron | 25.0% |
| ! | GTTTAGTATGTGTTTAATGT+TGG | - | chr1.1:75254098-75254117 | MS.gene49958:intron | 25.0% |
| ! | TAAGAAGAACAAATCAAACA+AGG | - | chr1.1:75253500-75253519 | MS.gene49958:intron | 25.0% |
| ! | TACATTTCACAAGATTTCTT+GGG | - | chr1.1:75255620-75255639 | MS.gene49958:intron | 25.0% |
| ! | TATGATAGGAAAAACAATTG+TGG | + | chr1.1:75257602-75257621 | None:intergenic | 25.0% |
| ! | TGGAAGAATGATTTAAATTC+TGG | - | chr1.1:75254276-75254295 | MS.gene49958:intron | 25.0% |
| ! | TTAAAATCAAAGAAAAGGGA+AGG | + | chr1.1:75255874-75255893 | None:intergenic | 25.0% |
| ! | TTGACAAGTAAACAAAAGAA+AGG | + | chr1.1:75257108-75257127 | None:intergenic | 25.0% |
| !! | AAATATATATGTGATGATGC+AGG | - | chr1.1:75257827-75257846 | MS.gene49958:intron | 25.0% |
| !! | AATTTTCATGTCAGTTTGAT+AGG | + | chr1.1:75254669-75254688 | None:intergenic | 25.0% |
| !! | TTAATGTTGGTTGTTTGTAT+TGG | - | chr1.1:75254111-75254130 | MS.gene49958:CDS | 25.0% |
| !!! | ATGGAAAGAAGTTATTTTGA+AGG | - | chr1.1:75255124-75255143 | MS.gene49958:CDS | 25.0% |
| !!! | GCAGGTGTTTTTATTTAAAT+TGG | - | chr1.1:75257845-75257864 | MS.gene49958:intron | 25.0% |
| !!! | TCTATAGCATTGTAGTTTTA+TGG | + | chr1.1:75254695-75254714 | None:intergenic | 25.0% |
| !!! | TGGAAAGAAGTTATTTTGAA+GGG | - | chr1.1:75255125-75255144 | MS.gene49958:CDS | 25.0% |
| !!! | TTCATTGTGTTGGTTATTTA+AGG | - | chr1.1:75255380-75255399 | MS.gene49958:intron | 25.0% |
| !!! | TTTTTTTTAAACTCGGTATC+TGG | + | chr1.1:75256349-75256368 | None:intergenic | 25.0% |
| AAAGAAAGACATTCAAACTC+CGG | - | chr1.1:75255557-75255576 | MS.gene49958:intron | 30.0% | |
| AAGGGAAACGAAAAAGAAAA+AGG | + | chr1.1:75255692-75255711 | None:intergenic | 30.0% | |
| AATAGTAGCATATAGAAAGC+GGG | - | chr1.1:75256402-75256421 | MS.gene49958:intron | 30.0% | |
| AATCTTAAGCTGTTATGCAT+TGG | + | chr1.1:75254016-75254035 | None:intergenic | 30.0% | |
| AATTCTGAATAGTGTAGGTT+TGG | + | chr1.1:75258150-75258169 | None:intergenic | 30.0% | |
| ACTAGAAAGCAGAAATTCTT+GGG | - | chr1.1:75256191-75256210 | MS.gene49958:intron | 30.0% | |
| ACTATGCAACTGAATAACTA+TGG | - | chr1.1:75256046-75256065 | MS.gene49958:intron | 30.0% | |
| ACTTCTCCTATAGTATTCTT+CGG | + | chr1.1:75255158-75255177 | None:intergenic | 30.0% | |
| ACTTGAATTCTGAATAGTGT+AGG | + | chr1.1:75258155-75258174 | None:intergenic | 30.0% | |
| AGAATATTCTTGAACAGGTT+AGG | - | chr1.1:75256109-75256128 | MS.gene49958:intron | 30.0% | |
| ATAATAAGATGTCCTTGAGA+AGG | + | chr1.1:75255731-75255750 | None:intergenic | 30.0% | |
| ATTTGGTTGAAAGTTGGAAT+CGG | - | chr1.1:75255008-75255027 | MS.gene49958:intron | 30.0% | |
| CAATAGTAGCATATAGAAAG+CGG | - | chr1.1:75256401-75256420 | MS.gene49958:intron | 30.0% | |
| CAATGTGTGGTTCAAATTAA+CGG | + | chr1.1:75254610-75254629 | None:intergenic | 30.0% | |
| CACATGAGATTAAAGTTATC+AGG | - | chr1.1:75257470-75257489 | MS.gene49958:intron | 30.0% | |
| CATGAGATTAAAGTTATCAG+GGG | - | chr1.1:75257472-75257491 | MS.gene49958:intron | 30.0% | |
| CCATAAACTCATTTAGAGAA+AGG | + | chr1.1:75255194-75255213 | None:intergenic | 30.0% | |
| CCTTTCTCTAAATGAGTTTA+TGG | - | chr1.1:75255191-75255210 | MS.gene49958:intron | 30.0% | |
| CGATGATTCTGTCAAATTTA+TGG | + | chr1.1:75258039-75258058 | None:intergenic | 30.0% | |
| CTTAATAACGAAATCATGAC+TGG | - | chr1.1:75255040-75255059 | MS.gene49958:intron | 30.0% | |
| GAAAGGAAAAAGATTAAACC+GGG | + | chr1.1:75255345-75255364 | None:intergenic | 30.0% | |
| GATTACCATAATCCAAATTG+CGG | + | chr1.1:75256592-75256611 | None:intergenic | 30.0% | |
| GATTTAGATCTAATCGATGA+TGG | - | chr1.1:75254450-75254469 | MS.gene49958:intron | 30.0% | |
| GGTGAGAAAATCAAATCAAA+TGG | - | chr1.1:75255105-75255124 | MS.gene49958:CDS | 30.0% | |
| GTATAGTGAATCAGATCATA+TGG | + | chr1.1:75256497-75256516 | None:intergenic | 30.0% | |
| TACTAGAAAGCAGAAATTCT+TGG | - | chr1.1:75256190-75256209 | MS.gene49958:intron | 30.0% | |
| TATAATGCAACTGATGCATA+GGG | - | chr1.1:75257716-75257735 | MS.gene49958:intron | 30.0% | |
| TATGAACAGTGTTATCGAAT+CGG | - | chr1.1:75254726-75254745 | MS.gene49958:intron | 30.0% | |
| TATTGCAATGTATCAAAACC+TGG | + | chr1.1:75255514-75255533 | None:intergenic | 30.0% | |
| TCCTATAAAAGAAGAACATG+AGG | + | chr1.1:75258612-75258631 | None:intergenic | 30.0% | |
| TGAAAACATGTGTCTTTCTA+AGG | - | chr1.1:75258276-75258295 | MS.gene49958:intron | 30.0% | |
| TGAATATTGATGCCAAACTA+CGG | - | chr1.1:75257428-75257447 | MS.gene49958:intron | 30.0% | |
| TGAGGAAGATGATAACTTTA+AGG | - | chr1.1:75257949-75257968 | MS.gene49958:intron | 30.0% | |
| TGTTTGTATTGGAATTTGCA+GGG | - | chr1.1:75254122-75254141 | MS.gene49958:CDS | 30.0% | |
| TTAAATACATGTCCACATCA+GGG | - | chr1.1:75258457-75258476 | MS.gene49958:intron | 30.0% | |
| TTAAGAAAAAGAAAGGACCA+TGG | - | chr1.1:75258348-75258367 | MS.gene49958:CDS | 30.0% | |
| TTAATCTCATGTGAACTCTT+GGG | + | chr1.1:75257463-75257482 | None:intergenic | 30.0% | |
| TTATAATGCAACTGATGCAT+AGG | - | chr1.1:75257715-75257734 | MS.gene49958:intron | 30.0% | |
| TTGTTTGTATTGGAATTTGC+AGG | - | chr1.1:75254121-75254140 | MS.gene49958:CDS | 30.0% | |
| TTTAAATACATGTCCACATC+AGG | - | chr1.1:75258456-75258475 | MS.gene49958:intron | 30.0% | |
| TTTAACTGGAAGTTCAATGA+GGG | - | chr1.1:75255804-75255823 | MS.gene49958:intron | 30.0% | |
| TTTAATCTCATGTGAACTCT+TGG | + | chr1.1:75257464-75257483 | None:intergenic | 30.0% | |
| TTTATGTGTGTATGAATAGG+TGG | - | chr1.1:75253853-75253872 | MS.gene49958:intron | 30.0% | |
| ! | AGACATTTATTGATTGCCTT+TGG | - | chr1.1:75257899-75257918 | MS.gene49958:CDS | 30.0% |
| ! | AGTTTATTAATTCTGGGAGA+TGG | - | chr1.1:75257317-75257336 | MS.gene49958:intron | 30.0% |
| ! | TCATGTTCTTCTTTTATAGG+AGG | - | chr1.1:75258611-75258630 | MS.gene49958:CDS | 30.0% |
| ! | TCCTCATGTTCTTCTTTTAT+AGG | - | chr1.1:75258608-75258627 | MS.gene49958:CDS | 30.0% |
| !! | AACTTTGCTCTAGCTTTAAA+TGG | - | chr1.1:75256269-75256288 | MS.gene49958:intron | 30.0% |
| !! | ACTTTGCTCTAGCTTTAAAT+GGG | - | chr1.1:75256270-75256289 | MS.gene49958:intron | 30.0% |
| !! | AGCATGCTTTTCTTTTTCAT+TGG | - | chr1.1:75256660-75256679 | MS.gene49958:intron | 30.0% |
| !! | AGTTGATGTTGGCTTATTTA+AGG | - | chr1.1:75255589-75255608 | MS.gene49958:intron | 30.0% |
| !! | GTAGTGGATGAAAAATGTAA+AGG | - | chr1.1:75254246-75254265 | MS.gene49958:intron | 30.0% |
| !! | TTTTAACTGGAAGTTCAATG+AGG | - | chr1.1:75255803-75255822 | MS.gene49958:intron | 30.0% |
| !! | TTTTCCCTGCATTTTTTAGA+GGG | + | chr1.1:75258410-75258429 | None:intergenic | 30.0% |
| !! | TTTTTCCCTGCATTTTTTAG+AGG | + | chr1.1:75258411-75258430 | None:intergenic | 30.0% |
| !!! | AAAGAAGTTATTTTGAAGGG+AGG | - | chr1.1:75255128-75255147 | MS.gene49958:CDS | 30.0% |
| !!! | GTATTTTGAGTTTCACTTAC+CGG | - | chr1.1:75257778-75257797 | MS.gene49958:intron | 30.0% |
| !!! | TTTGGATATTGGCTTTTAAC+TGG | - | chr1.1:75255790-75255809 | MS.gene49958:intron | 30.0% |
| AAAGAAAATGAGGAGGGAAA+AGG | + | chr1.1:75257666-75257685 | None:intergenic | 35.0% | |
| AACAGCTTAAGATTTGTGGT+TGG | - | chr1.1:75254022-75254041 | MS.gene49958:intron | 35.0% | |
| AAGAAAATGAGGAGGGAAAA+GGG | + | chr1.1:75257665-75257684 | None:intergenic | 35.0% | |
| AAGAAAGACATTCAAACTCC+GGG | - | chr1.1:75255558-75255577 | MS.gene49958:intron | 35.0% | |
| AATGCAGGGAAAAAATGCAA+AGG | - | chr1.1:75258417-75258436 | MS.gene49958:intron | 35.0% | |
| AGCATAAATTCATGTAGCCA+AGG | + | chr1.1:75256858-75256877 | None:intergenic | 35.0% | |
| AGGTTGTCATTGGAAAAACA+AGG | + | chr1.1:75255711-75255730 | None:intergenic | 35.0% | |
| AGTACATGATATTGAGCCAT+TGG | + | chr1.1:75257498-75257517 | None:intergenic | 35.0% | |
| ATACGCTTCCTCTTTCAATT+TGG | - | chr1.1:75256687-75256706 | MS.gene49958:intron | 35.0% | |
| ATTGCTGGAAACAGAAATTC+AGG | - | chr1.1:75256370-75256389 | MS.gene49958:intron | 35.0% | |
| ATTGGCAAATGTTTAGCTGA+TGG | + | chr1.1:75254331-75254350 | None:intergenic | 35.0% | |
| CCAATATCCAAACAACTACA+TGG | + | chr1.1:75255782-75255801 | None:intergenic | 35.0% | |
| CCATGTAGTTGTTTGGATAT+TGG | - | chr1.1:75255779-75255798 | MS.gene49958:intron | 35.0% | |
| CTTTCATCATCCGAATTATC+CGG | + | chr1.1:75253923-75253942 | None:intergenic | 35.0% | |
| GCATAACAGCTTAAGATTTG+TGG | - | chr1.1:75254018-75254037 | MS.gene49958:intron | 35.0% | |
| GCTAAACATTTGCCAATGAT+TGG | - | chr1.1:75254334-75254353 | MS.gene49958:intron | 35.0% | |
| GGAAAACCGAAGAATACTAT+AGG | - | chr1.1:75255149-75255168 | MS.gene49958:CDS | 35.0% | |
| GGTTGTCATTGGAAAAACAA+GGG | + | chr1.1:75255710-75255729 | None:intergenic | 35.0% | |
| GTGTTACACATTTCTGTGTA+AGG | - | chr1.1:75258173-75258192 | MS.gene49958:CDS | 35.0% | |
| GTTAGCAAGCTCATTATGAT+AGG | + | chr1.1:75257616-75257635 | None:intergenic | 35.0% | |
| GTTTACTTGTCAACGTTACA+GGG | - | chr1.1:75257115-75257134 | MS.gene49958:intron | 35.0% | |
| GTTTGTATTGGAATTTGCAG+GGG | - | chr1.1:75254123-75254142 | MS.gene49958:CDS | 35.0% | |
| TAAATACATGTCCACATCAG+GGG | - | chr1.1:75258458-75258477 | MS.gene49958:intron | 35.0% | |
| TAACCAACACAATGAACACT+TGG | + | chr1.1:75255376-75255395 | None:intergenic | 35.0% | |
| TACAGTGGTCGATGAATAAT+AGG | + | chr1.1:75257072-75257091 | None:intergenic | 35.0% | |
| TCTCATACGAAAACATGTCT+TGG | - | chr1.1:75258241-75258260 | MS.gene49958:intron | 35.0% | |
| TGAATAGTGTAGGTTTGGAT+TGG | + | chr1.1:75258145-75258164 | None:intergenic | 35.0% | |
| TGAGAACAGAAAATTCACAC+TGG | + | chr1.1:75257552-75257571 | None:intergenic | 35.0% | |
| TGTTTACTTGTCAACGTTAC+AGG | - | chr1.1:75257114-75257133 | MS.gene49958:intron | 35.0% | |
| TTCATTAGCACTGTTGTCTA+TGG | + | chr1.1:75254905-75254924 | None:intergenic | 35.0% | |
| TTCATTCCAGAATTTCTCCT+TGG | - | chr1.1:75256838-75256857 | MS.gene49958:intron | 35.0% | |
| TTCGGATGATGAAAGTAGTT+CGG | - | chr1.1:75253928-75253947 | MS.gene49958:intron | 35.0% | |
| TTGGCAAATGTTTAGCTGAT+GGG | + | chr1.1:75254330-75254349 | None:intergenic | 35.0% | |
| ! | AATCACCCTCTAAAAAATGC+AGG | - | chr1.1:75258402-75258421 | MS.gene49958:intron | 35.0% |
| ! | ATCACCCTCTAAAAAATGCA+GGG | - | chr1.1:75258403-75258422 | MS.gene49958:intron | 35.0% |
| ! | ATGAGTGGAAAGTATAGCAT+TGG | - | chr1.1:75257573-75257592 | MS.gene49958:intron | 35.0% |
| ! | ATGTTGCCATTTATTGGGTT+TGG | + | chr1.1:75253444-75253463 | None:intergenic | 35.0% |
| ! | ATTTTCTGTTCTCACATGAG+TGG | - | chr1.1:75257558-75257577 | MS.gene49958:intron | 35.0% |
| ! | CATCGATGTTGCCATTTATT+GGG | + | chr1.1:75253449-75253468 | None:intergenic | 35.0% |
| ! | CATTAGCAACCTCATTGATT+CGG | + | chr1.1:75253750-75253769 | None:intergenic | 35.0% |
| ! | CATTTATTGATTGCCTTTGG+CGG | - | chr1.1:75257902-75257921 | MS.gene49958:CDS | 35.0% |
| ! | GACTATTTTCCGAATCAATG+AGG | - | chr1.1:75253738-75253757 | MS.gene49958:intron | 35.0% |
| ! | TCATCGATGTTGCCATTTAT+TGG | + | chr1.1:75253450-75253469 | None:intergenic | 35.0% |
| ! | TGAGTGGAAAGTATAGCATT+GGG | - | chr1.1:75257574-75257593 | MS.gene49958:intron | 35.0% |
| !! | AACACTTGGTGTGTTAAGAA+AGG | + | chr1.1:75255362-75255381 | None:intergenic | 35.0% |
| !! | ATTGATTCGGAAAATAGTCG+CGG | + | chr1.1:75253737-75253756 | None:intergenic | 35.0% |
| !!! | AATCGGTGGCAGTTTTTTTT+TGG | - | chr1.1:75254759-75254778 | MS.gene49958:intron | 35.0% |
| !!! | ATCGGTGGCAGTTTTTTTTT+GGG | - | chr1.1:75254760-75254779 | MS.gene49958:intron | 35.0% |
| !!! | GTTGTCGACTTTTATTGTGT+TGG | - | chr1.1:75255301-75255320 | MS.gene49958:intron | 35.0% |
| !!! | TTTTGATTTCCCTTTTCAGC+TGG | - | chr1.1:75253693-75253712 | MS.gene49958:intron | 35.0% |
| AACGGACATTAAACACTCCA+TGG | + | chr1.1:75254592-75254611 | None:intergenic | 40.0% | |
| AAGAAGAGTTACTGTCACCA+TGG | - | chr1.1:75256559-75256578 | MS.gene49958:intron | 40.0% | |
| AATAATCTGACCATGCTCAG+AGG | + | chr1.1:75257164-75257183 | None:intergenic | 40.0% | |
| ACAAAAGAAAGGTCGTGAGT+AGG | + | chr1.1:75257097-75257116 | None:intergenic | 40.0% | |
| ACACCAAGTGTTCATTGTGT+TGG | - | chr1.1:75255370-75255389 | MS.gene49958:intron | 40.0% | |
| ACCATAATCCAAATTGCGGT+TGG | + | chr1.1:75256588-75256607 | None:intergenic | 40.0% | |
| AGAAAATGAGGAGGGAAAAG+GGG | + | chr1.1:75257664-75257683 | None:intergenic | 40.0% | |
| AGAAAGACATTCAAACTCCG+GGG | - | chr1.1:75255559-75255578 | MS.gene49958:intron | 40.0% | |
| AGAAGAGTTACTGTCACCAT+GGG | - | chr1.1:75256560-75256579 | MS.gene49958:intron | 40.0% | |
| AGATAAAGGTTATTCCGCAC+CGG | - | chr1.1:75253901-75253920 | MS.gene49958:intron | 40.0% | |
| AGCTAGAGCAAAGTTCCATA+TGG | + | chr1.1:75256264-75256283 | None:intergenic | 40.0% | |
| AGCTTGAAATACCATCCTTC+AGG | - | chr1.1:75257194-75257213 | MS.gene49958:intron | 40.0% | |
| AGGAAAAAGATTAAACCGGG+TGG | + | chr1.1:75255342-75255361 | None:intergenic | 40.0% | |
| AGTTGGAACGTTGTCAATGA+TGG | + | chr1.1:75253559-75253578 | None:intergenic | 40.0% | |
| ATCTGTGTGTGTTGGAAGTA+AGG | - | chr1.1:75255078-75255097 | MS.gene49958:CDS | 40.0% | |
| ATGTAGCCAAGGAGAAATTC+TGG | + | chr1.1:75256847-75256866 | None:intergenic | 40.0% | |
| ATTAGCACTGTTGTCTATGG+CGG | + | chr1.1:75254902-75254921 | None:intergenic | 40.0% | |
| CCTGAACCAAACCCAATAAA+TGG | - | chr1.1:75253435-75253454 | MS.gene49958:intron | 40.0% | |
| CTAAGCTTATCTGTGTGTGT+TGG | - | chr1.1:75255070-75255089 | MS.gene49958:CDS | 40.0% | |
| GAACAGAAAATTCACACTGG+AGG | + | chr1.1:75257549-75257568 | None:intergenic | 40.0% | |
| GAATGTGTTGCAACAGAGAA+AGG | + | chr1.1:75258070-75258089 | None:intergenic | 40.0% | |
| GGTCGATGAATAATAGGCTA+TGG | + | chr1.1:75257066-75257085 | None:intergenic | 40.0% | |
| GGTGGCTATGATTGTATAGT+CGG | - | chr1.1:75257136-75257155 | MS.gene49958:intron | 40.0% | |
| GGTTCATAGATCGACTAATC+CGG | + | chr1.1:75256328-75256347 | None:intergenic | 40.0% | |
| GTTAAAACATGAGCACCTGA+AGG | + | chr1.1:75257212-75257231 | None:intergenic | 40.0% | |
| GTTGACCAAATACTTGAACC+CGG | - | chr1.1:75256536-75256555 | MS.gene49958:intron | 40.0% | |
| TGGCAAATGTTTAGCTGATG+GGG | + | chr1.1:75254329-75254348 | None:intergenic | 40.0% | |
| TTAAAGTTATCAGGGGCCAA+TGG | - | chr1.1:75257479-75257498 | MS.gene49958:intron | 40.0% | |
| TTATTCCGCACCGGATAATT+CGG | - | chr1.1:75253910-75253929 | MS.gene49958:intron | 40.0% | |
| TTCCAATGACAACCTTCTCA+AGG | - | chr1.1:75255716-75255735 | MS.gene49958:intron | 40.0% | |
| TTCTTCCGGGTTCAAGTATT+TGG | + | chr1.1:75256544-75256563 | None:intergenic | 40.0% | |
| TTGAGACACCTCAGTATTTG+AGG | - | chr1.1:75253978-75253997 | MS.gene49958:intron | 40.0% | |
| TTTAAGCGTTCTCTCTACGT+TGG | - | chr1.1:75257280-75257299 | MS.gene49958:intron | 40.0% | |
| ! | AACGTTGTCAATGATGGAAG+CGG | + | chr1.1:75253553-75253572 | None:intergenic | 40.0% |
| ! | ATTTGACTAGCCAGCTGAAA+AGG | + | chr1.1:75253706-75253725 | None:intergenic | 40.0% |
| ! | CCATTTATTGGGTTTGGTTC+AGG | + | chr1.1:75253438-75253457 | None:intergenic | 40.0% |
| ! | TAGGGAAGAAGGAGCATATT+GGG | - | chr1.1:75256938-75256957 | MS.gene49958:intron | 40.0% |
| ! | TATTAGTCACCCCAGCTTTT+GGG | - | chr1.1:75255254-75255273 | MS.gene49958:intron | 40.0% |
| ! | TATTGGGTTTGGTTCAGGTT+CGG | + | chr1.1:75253433-75253452 | None:intergenic | 40.0% |
| ! | TTATTAGTCACCCCAGCTTT+TGG | - | chr1.1:75255253-75255272 | MS.gene49958:intron | 40.0% |
| ! | TTTGACTAGCCAGCTGAAAA+GGG | + | chr1.1:75253705-75253724 | None:intergenic | 40.0% |
| !! | ATGAGCTTGCTAACAAGCAA+AGG | - | chr1.1:75257622-75257641 | MS.gene49958:intron | 40.0% |
| !! | TGGTTTGGAAGAGAGTATTG+AGG | - | chr1.1:75257931-75257950 | MS.gene49958:intron | 40.0% |
| !!! | ACTTTTGTTGTTTTGCCCCA+TGG | - | chr1.1:75255481-75255500 | MS.gene49958:CDS | 40.0% |
| AAACATGAGCACCTGAAGGA+TGG | + | chr1.1:75257208-75257227 | None:intergenic | 45.0% | |
| AAAGACCTACCTTCCCGATA+CGG | + | chr1.1:75254200-75254219 | None:intergenic | 45.0% | |
| AACTACATGGCAGAGACGAA+CGG | + | chr1.1:75255769-75255788 | None:intergenic | 45.0% | |
| AACTCTTGAACTCGCTACTC+GGG | - | chr1.1:75253575-75253594 | MS.gene49958:intron | 45.0% | |
| AAGCATTACCCCAAAAGCTG+GGG | + | chr1.1:75255266-75255285 | None:intergenic | 45.0% | |
| ACAGTGCATGTGCATCAAAC+AGG | + | chr1.1:75258092-75258111 | None:intergenic | 45.0% | |
| ACCATTTGCGCAAACATGAG+TGG | - | chr1.1:75254171-75254190 | MS.gene49958:intron | 45.0% | |
| ACTTCAGAAAATGCAGCTGC+AGG | + | chr1.1:75254057-75254076 | None:intergenic | 45.0% | |
| AGAGCCTTCCTCAAATACTG+AGG | + | chr1.1:75253989-75254008 | None:intergenic | 45.0% | |
| AGCAGAAATTCTTGGGACCT+TGG | - | chr1.1:75256198-75256217 | MS.gene49958:intron | 45.0% | |
| AGGAGAGTAATCGAAAGCCA+TGG | - | chr1.1:75254537-75254556 | MS.gene49958:intron | 45.0% | |
| ATACCCAATTTCGGCCGATA+TGG | - | chr1.1:75254792-75254811 | MS.gene49958:intron | 45.0% | |
| ATATCGGCCGAAATTGGGTA+TGG | + | chr1.1:75254793-75254812 | None:intergenic | 45.0% | |
| ATCATCCGAATTATCCGGTG+CGG | + | chr1.1:75253918-75253937 | None:intergenic | 45.0% | |
| ATGTATCAAAACCTGGCCAG+TGG | + | chr1.1:75255507-75255526 | None:intergenic | 45.0% | |
| CAACTCTTGAACTCGCTACT+CGG | - | chr1.1:75253574-75253593 | MS.gene49958:intron | 45.0% | |
| CAAGCATTACCCCAAAAGCT+GGG | + | chr1.1:75255267-75255286 | None:intergenic | 45.0% | |
| CAATATGCTCCTTCTTCCCT+AGG | + | chr1.1:75256939-75256958 | None:intergenic | 45.0% | |
| CATTTGCGCAAACATGAGTG+GGG | - | chr1.1:75254173-75254192 | MS.gene49958:intron | 45.0% | |
| CCATTTGCGCAAACATGAGT+GGG | - | chr1.1:75254172-75254191 | MS.gene49958:intron | 45.0% | |
| CTCTCCACCATACCCAATTT+CGG | - | chr1.1:75254783-75254802 | MS.gene49958:intron | 45.0% | |
| CTCTGATTGGCAGTAATCGA+GGG | + | chr1.1:75258013-75258032 | None:intergenic | 45.0% | |
| GAATGTTCGACAGTGAGTGT+AGG | - | chr1.1:75254922-75254941 | MS.gene49958:CDS | 45.0% | |
| GACACCTCAGTATTTGAGGA+AGG | - | chr1.1:75253982-75254001 | MS.gene49958:intron | 45.0% | |
| GACAGCAGAATCATTCATGC+AGG | + | chr1.1:75254413-75254432 | None:intergenic | 45.0% | |
| GAGTCGAACAATTCGAACAG+AGG | - | chr1.1:75258480-75258499 | MS.gene49958:intron | 45.0% | |
| GCAGAGACGAACGGAAAATA+TGG | + | chr1.1:75255760-75255779 | None:intergenic | 45.0% | |
| GCCAACCGCAATTTGGATTA+TGG | - | chr1.1:75256584-75256603 | MS.gene49958:intron | 45.0% | |
| GGCAAATGTTTAGCTGATGG+GGG | + | chr1.1:75254328-75254347 | None:intergenic | 45.0% | |
| GGTGACAGTAACTCTTCTTC+CGG | + | chr1.1:75256558-75256577 | None:intergenic | 45.0% | |
| GTCCTTGAGAAGGTTGTCAT+TGG | + | chr1.1:75255721-75255740 | None:intergenic | 45.0% | |
| GTCTCTGCCATGTAGTTGTT+TGG | - | chr1.1:75255772-75255791 | MS.gene49958:intron | 45.0% | |
| GTGACAGTAACTCTTCTTCC+GGG | + | chr1.1:75256557-75256576 | None:intergenic | 45.0% | |
| GTGTGTTGGAAGTAAGGTTG+TGG | - | chr1.1:75255084-75255103 | MS.gene49958:CDS | 45.0% | |
| TACTTGTCAACGTTACAGGG+TGG | - | chr1.1:75257118-75257137 | MS.gene49958:intron | 45.0% | |
| TATATGGTTCGTGCATGCCA+TGG | - | chr1.1:75254572-75254591 | MS.gene49958:intron | 45.0% | |
| TCAAGGTCTCAGGTTCCTAT+GGG | - | chr1.1:75256233-75256252 | MS.gene49958:intron | 45.0% | |
| TCATAGATCGACTAATCCGG+CGG | + | chr1.1:75256325-75256344 | None:intergenic | 45.0% | |
| TCATCTAGATTTACCACGCG+AGG | - | chr1.1:75256896-75256915 | MS.gene49958:intron | 45.0% | |
| TCATGTTTGCGCAAATGGTG+TGG | + | chr1.1:75254170-75254189 | None:intergenic | 45.0% | |
| TCTCTGATTGGCAGTAATCG+AGG | + | chr1.1:75258014-75258033 | None:intergenic | 45.0% | |
| TGTCTCATCATCCAAGCCTA+GGG | - | chr1.1:75256920-75256939 | MS.gene49958:intron | 45.0% | |
| TGTTATCGAATCGGCCATGA+CGG | - | chr1.1:75254735-75254754 | MS.gene49958:intron | 45.0% | |
| TTAGCACTGTTGTCTATGGC+GGG | + | chr1.1:75254901-75254920 | None:intergenic | 45.0% | |
| TTGTCTCATCATCCAAGCCT+AGG | - | chr1.1:75256919-75256938 | MS.gene49958:intron | 45.0% | |
| ! | AAAAGGCAGAGAAGTGTGTC+TGG | + | chr1.1:75257038-75257057 | None:intergenic | 45.0% |
| ! | AAAGGCAGAGAAGTGTGTCT+GGG | + | chr1.1:75257037-75257056 | None:intergenic | 45.0% |
| ! | AAATGGTGTGGAGCATCAAG+GGG | + | chr1.1:75254158-75254177 | None:intergenic | 45.0% |
| ! | ACGTTGTCAATGATGGAAGC+GGG | + | chr1.1:75253552-75253571 | None:intergenic | 45.0% |
| ! | AGGGAAGAAGGAGCATATTG+GGG | - | chr1.1:75256939-75256958 | MS.gene49958:intron | 45.0% |
| ! | ATTAGTCACCCCAGCTTTTG+GGG | - | chr1.1:75255255-75255274 | MS.gene49958:intron | 45.0% |
| ! | ATTGATTGCCTTTGGCGGAT+TGG | - | chr1.1:75257907-75257926 | MS.gene49958:CDS | 45.0% |
| ! | CAAATGGTGTGGAGCATCAA+GGG | + | chr1.1:75254159-75254178 | None:intergenic | 45.0% |
| ! | CTAGGGAAGAAGGAGCATAT+TGG | - | chr1.1:75256937-75256956 | MS.gene49958:intron | 45.0% |
| !! | TTAGCTTGCTTGTTTCCACC+CGG | - | chr1.1:75255324-75255343 | MS.gene49958:intron | 45.0% |
| !! | TTCCATATGGACTAGCCCAT+AGG | + | chr1.1:75256251-75256270 | None:intergenic | 45.0% |
| !! | TTCCTATGGGCTAGTCCATA+TGG | - | chr1.1:75256246-75256265 | MS.gene49958:intron | 45.0% |
| !! | TTGCTCGGCTTATTGGTTCT+TGG | + | chr1.1:75258662-75258681 | None:intergenic | 45.0% |
| !!! | TATTATTTAAAATTAATTCA+TGG | - | chr1.1:75254476-75254495 | MS.gene49958:intron | 5.0% |
| AACATCAACTAGCGTTGCCC+CGG | + | chr1.1:75255579-75255598 | None:intergenic | 50.0% | |
| AACATGAGTGGGGTCCGTAT+CGG | - | chr1.1:75254183-75254202 | MS.gene49958:intron | 50.0% | |
| AAGTGTGTCTGGGAAGTGAG+AGG | + | chr1.1:75257027-75257046 | None:intergenic | 50.0% | |
| AATCCCACCATCCACTAGCT+GGG | + | chr1.1:75256298-75256317 | None:intergenic | 50.0% | |
| ACCAATAAGCCGAGCAATGC+TGG | - | chr1.1:75258665-75258684 | MS.gene49958:CDS | 50.0% | |
| ATAGTCGGTACCTCTGAGCA+TGG | - | chr1.1:75257151-75257170 | MS.gene49958:intron | 50.0% | |
| ATTGTTCGACTCCCCTGATG+TGG | + | chr1.1:75258472-75258491 | None:intergenic | 50.0% | |
| CCAAGCATTACCCCAAAAGC+TGG | + | chr1.1:75255268-75255287 | None:intergenic | 50.0% | |
| CCAATAAGCCGAGCAATGCT+GGG | - | chr1.1:75258666-75258685 | MS.gene49958:CDS | 50.0% | |
| CCACACATTGCACTGTCACT+AGG | - | chr1.1:75254620-75254639 | MS.gene49958:intron | 50.0% | |
| CCCACTCATGTTTGCGCAAA+TGG | + | chr1.1:75254175-75254194 | None:intergenic | 50.0% | |
| CCTAGTGACAGTGCAATGTG+TGG | + | chr1.1:75254623-75254642 | None:intergenic | 50.0% | |
| CGAGTAGCGAGTTCAAGAGT+TGG | + | chr1.1:75253576-75253595 | None:intergenic | 50.0% | |
| CTCAAGGTCTCAGGTTCCTA+TGG | - | chr1.1:75256232-75256251 | MS.gene49958:intron | 50.0% | |
| CTCATGTGAACTCTTGGGCT+TGG | + | chr1.1:75257458-75257477 | None:intergenic | 50.0% | |
| GGAACAGCTATGCTGACAGT+GGG | + | chr1.1:75253531-75253550 | None:intergenic | 50.0% | |
| GGTCGTGAGTAGGATTACAG+TGG | + | chr1.1:75257087-75257106 | None:intergenic | 50.0% | |
| GTTATCGAATCGGCCATGAC+GGG | - | chr1.1:75254736-75254755 | MS.gene49958:intron | 50.0% | |
| TAGGAACCTGAGACCTTGAG+AGG | + | chr1.1:75256232-75256251 | None:intergenic | 50.0% | |
| TCATCCAAGCCTAGGGAAGA+AGG | - | chr1.1:75256927-75256946 | MS.gene49958:intron | 50.0% | |
| TCCGCCATAATCCGATGTCA+CGG | - | chr1.1:75254823-75254842 | MS.gene49958:intron | 50.0% | |
| TGGGGAAGAAGAAGAAGCAG+CGG | - | chr1.1:75253388-75253407 | MS.gene49958:CDS | 50.0% | |
| ! | GAGGTGTCTCAAGATACTGC+AGG | + | chr1.1:75253970-75253989 | None:intergenic | 50.0% |
| ! | GCAAATGGTGTGGAGCATCA+AGG | + | chr1.1:75254160-75254179 | None:intergenic | 50.0% |
| !! | GTGTAGGTTTGGATTGGCAG+TGG | + | chr1.1:75258139-75258158 | None:intergenic | 50.0% |
| !! | TGGTCGGTATGGTGGGATTT+TGG | - | chr1.1:75254855-75254874 | MS.gene49958:intron | 50.0% |
| !!! | CCAGCTTTTGGGGTAATGCT+TGG | - | chr1.1:75255265-75255284 | MS.gene49958:intron | 50.0% |
| AAAACCTGGCCAGTGGCCAT+GGG | + | chr1.1:75255500-75255519 | None:intergenic | 55.0% | |
| ACATGAGTGGGGTCCGTATC+GGG | - | chr1.1:75254184-75254203 | MS.gene49958:intron | 55.0% | |
| ACCACATGTGGTCGGTATGG+TGG | - | chr1.1:75254847-75254866 | MS.gene49958:intron | 55.0% | |
| ATCCCACCATCCACTAGCTG+GGG | + | chr1.1:75256297-75256316 | None:intergenic | 55.0% | |
| CAAACCAGCCAATCCGCCAA+AGG | + | chr1.1:75257918-75257937 | None:intergenic | 55.0% | |
| CAATCCCACCATCCACTAGC+TGG | + | chr1.1:75256299-75256318 | None:intergenic | 55.0% | |
| CCAATTTCGGCCGATATGGC+GGG | - | chr1.1:75254796-75254815 | MS.gene49958:intron | 55.0% | |
| CCACATGTGGTCGGTATGGT+GGG | - | chr1.1:75254848-75254867 | MS.gene49958:intron | 55.0% | |
| CCCAATTTCGGCCGATATGG+CGG | - | chr1.1:75254795-75254814 | MS.gene49958:intron | 55.0% | |
| CCCAGCATTGCTCGGCTTAT+TGG | + | chr1.1:75258669-75258688 | None:intergenic | 55.0% | |
| CCGCCATATCGGCCGAAATT+GGG | + | chr1.1:75254798-75254817 | None:intergenic | 55.0% | |
| CTTGGAGTGTGCTCCTCTCA+AGG | - | chr1.1:75256216-75256235 | MS.gene49958:intron | 55.0% | |
| GAAGAAGCAGCGGCTGACAA+CGG | - | chr1.1:75253398-75253417 | MS.gene49958:CDS | 55.0% | |
| GATGATGAGACAACCTCGCG+TGG | + | chr1.1:75256912-75256931 | None:intergenic | 55.0% | |
| GCCGTGACATCGGATTATGG+CGG | + | chr1.1:75254827-75254846 | None:intergenic | 55.0% | |
| GGCGGAAAATCCCGCCATAT+CGG | + | chr1.1:75254809-75254828 | None:intergenic | 55.0% | |
| GGGAACAGCTATGCTGACAG+TGG | + | chr1.1:75253532-75253551 | None:intergenic | 55.0% | |
| TCGGCCGAAATTGGGTATGG+TGG | + | chr1.1:75254790-75254809 | None:intergenic | 55.0% | |
| TGCTCCTTCTTCCCTAGGCT+TGG | + | chr1.1:75256934-75256953 | None:intergenic | 55.0% | |
| TGTGCTCCTCTCAAGGTCTC+AGG | - | chr1.1:75256223-75256242 | MS.gene49958:intron | 55.0% | |
| TTAAATGGGCCCCCAGCTAG+TGG | - | chr1.1:75256284-75256303 | MS.gene49958:intron | 55.0% | |
| ! | CTTGAGAGGAGCACACTCCA+AGG | + | chr1.1:75256218-75256237 | None:intergenic | 55.0% |
| ! | GAATCGGCCATGACGGGAAT+CGG | - | chr1.1:75254742-75254761 | MS.gene49958:intron | 55.0% |
| ! | GGGGCAACGCTAGTTGATGT+TGG | - | chr1.1:75255578-75255597 | MS.gene49958:intron | 55.0% |
| ! | GGTGCCGTGACATCGGATTA+TGG | + | chr1.1:75254830-75254849 | None:intergenic | 55.0% |
| !! | ATTGCCTTTGGCGGATTGGC+TGG | - | chr1.1:75257911-75257930 | MS.gene49958:CDS | 55.0% |
| !! | CACATGTGGTGCCGTGACAT+CGG | + | chr1.1:75254837-75254856 | None:intergenic | 55.0% |
| !! | CAGCTAGTGGATGGTGGGAT+TGG | - | chr1.1:75256297-75256316 | MS.gene49958:intron | 55.0% |
| !! | CTTTGGCGGATTGGCTGGTT+TGG | - | chr1.1:75257916-75257935 | MS.gene49958:CDS | 55.0% |
| !! | TTGTTTTGCCCCATGGCCAC+TGG | - | chr1.1:75255488-75255507 | MS.gene49958:CDS | 55.0% |
| AAACCTGGCCAGTGGCCATG+GGG | + | chr1.1:75255499-75255518 | None:intergenic | 60.0% | |
| CAAAACCTGGCCAGTGGCCA+TGG | + | chr1.1:75255501-75255520 | None:intergenic | 60.0% | |
| CAAATTGCGGTTGGCGCCCA+TGG | + | chr1.1:75256579-75256598 | None:intergenic | 60.0% | |
| CATGGGCGCCAACCGCAATT+TGG | - | chr1.1:75256577-75256596 | MS.gene49958:intron | 60.0% | |
| CCCACCATACCGACCACATG+TGG | + | chr1.1:75254851-75254870 | None:intergenic | 60.0% | |
| CCCGCCATATCGGCCGAAAT+TGG | + | chr1.1:75254799-75254818 | None:intergenic | 60.0% | |
| CGATGTCACGGCACCACATG+TGG | - | chr1.1:75254835-75254854 | MS.gene49958:intron | 60.0% | |
| GGCACCACATGTGGTCGGTA+TGG | - | chr1.1:75254844-75254863 | MS.gene49958:intron | 60.0% | |
| GGGCTTGGCAAGCCGTAGTT+TGG | + | chr1.1:75257443-75257462 | None:intergenic | 60.0% | |
| GTCACGGCACCACATGTGGT+CGG | - | chr1.1:75254839-75254858 | MS.gene49958:intron | 60.0% | |
| TCCCACCATCCACTAGCTGG+GGG | + | chr1.1:75256296-75256315 | None:intergenic | 60.0% | |
| ! | GCACTGTTGTCTATGGCGGG+TGG | + | chr1.1:75254898-75254917 | None:intergenic | 60.0% |
| ! | TGGTGTGGAGCATCAAGGGG+TGG | + | chr1.1:75254155-75254174 | None:intergenic | 60.0% |
| !! | ACTGCCACCGATTCCCGTCA+TGG | + | chr1.1:75254752-75254771 | None:intergenic | 60.0% |
| !! | CTGTTGTCTATGGCGGGTGG+TGG | + | chr1.1:75254895-75254914 | None:intergenic | 60.0% |
| !! | GATGGTGGGATTGGTACCGC+CGG | - | chr1.1:75256306-75256325 | MS.gene49958:intron | 60.0% |
| !!! | GGGATTTTGGCTCTCCGCCA+TGG | - | chr1.1:75254868-75254887 | MS.gene49958:CDS | 60.0% |
| ATGGGCCCCCAGCTAGTGGA+TGG | - | chr1.1:75256288-75256307 | MS.gene49958:intron | 65.0% | |
| GAGTGGGGTCCGTATCGGGA+AGG | - | chr1.1:75254188-75254207 | MS.gene49958:intron | 65.0% | |
| GGGGTCCGTATCGGGAAGGT+AGG | - | chr1.1:75254192-75254211 | MS.gene49958:intron | 65.0% | |
| ! | GCCCCCAGCTAGTGGATGGT+GGG | - | chr1.1:75256292-75256311 | MS.gene49958:intron | 65.0% |
| ! | TCGGCCATGACGGGAATCGG+TGG | - | chr1.1:75254745-75254764 | MS.gene49958:intron | 65.0% |
| !! | CTATGGCGGGTGGTGGTCCA+TGG | + | chr1.1:75254888-75254907 | None:intergenic | 65.0% |
| TTGCCCCATGGCCACTGGCC+AGG | - | chr1.1:75255493-75255512 | MS.gene49958:CDS | 70.0% | |
| ! | GGCCCCCAGCTAGTGGATGG+TGG | - | chr1.1:75256291-75256310 | MS.gene49958:intron | 70.0% |
| ! | TGGCGGGTGGTGGTCCATGG+CGG | + | chr1.1:75254885-75254904 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 75253387 | 75258692 | 75253387 | ID=MS.gene49958 |
| chr1.1 | mRNA | 75253387 | 75258692 | 75253387 | ID=MS.gene49958.t1;Parent=MS.gene49958 |
| chr1.1 | exon | 75258483 | 75258692 | 75258483 | ID=MS.gene49958.t1.exon1;Parent=MS.gene49958.t1 |
| chr1.1 | CDS | 75258483 | 75258692 | 75258483 | ID=cds.MS.gene49958.t1;Parent=MS.gene49958.t1 |
| chr1.1 | exon | 75258320 | 75258367 | 75258320 | ID=MS.gene49958.t1.exon2;Parent=MS.gene49958.t1 |
| chr1.1 | CDS | 75258320 | 75258367 | 75258320 | ID=cds.MS.gene49958.t1;Parent=MS.gene49958.t1 |
| chr1.1 | exon | 75258040 | 75258207 | 75258040 | ID=MS.gene49958.t1.exon3;Parent=MS.gene49958.t1 |
| chr1.1 | CDS | 75258040 | 75258207 | 75258040 | ID=cds.MS.gene49958.t1;Parent=MS.gene49958.t1 |
| chr1.1 | exon | 75257870 | 75257936 | 75257870 | ID=MS.gene49958.t1.exon4;Parent=MS.gene49958.t1 |
| chr1.1 | CDS | 75257870 | 75257936 | 75257870 | ID=cds.MS.gene49958.t1;Parent=MS.gene49958.t1 |
| chr1.1 | exon | 75256469 | 75256533 | 75256469 | ID=MS.gene49958.t1.exon5;Parent=MS.gene49958.t1 |
| chr1.1 | CDS | 75256469 | 75256533 | 75256469 | ID=cds.MS.gene49958.t1;Parent=MS.gene49958.t1 |
| chr1.1 | exon | 75255474 | 75255552 | 75255474 | ID=MS.gene49958.t1.exon6;Parent=MS.gene49958.t1 |
| chr1.1 | CDS | 75255474 | 75255552 | 75255474 | ID=cds.MS.gene49958.t1;Parent=MS.gene49958.t1 |
| chr1.1 | exon | 75255060 | 75255175 | 75255060 | ID=MS.gene49958.t1.exon7;Parent=MS.gene49958.t1 |
| chr1.1 | CDS | 75255060 | 75255175 | 75255060 | ID=cds.MS.gene49958.t1;Parent=MS.gene49958.t1 |
| chr1.1 | exon | 75254864 | 75254943 | 75254864 | ID=MS.gene49958.t1.exon8;Parent=MS.gene49958.t1 |
| chr1.1 | CDS | 75254864 | 75254943 | 75254864 | ID=cds.MS.gene49958.t1;Parent=MS.gene49958.t1 |
| chr1.1 | exon | 75254109 | 75254178 | 75254109 | ID=MS.gene49958.t1.exon9;Parent=MS.gene49958.t1 |
| chr1.1 | CDS | 75254109 | 75254178 | 75254109 | ID=cds.MS.gene49958.t1;Parent=MS.gene49958.t1 |
| chr1.1 | exon | 75253578 | 75253655 | 75253578 | ID=MS.gene49958.t1.exon10;Parent=MS.gene49958.t1 |
| chr1.1 | CDS | 75253578 | 75253655 | 75253578 | ID=cds.MS.gene49958.t1;Parent=MS.gene49958.t1 |
| chr1.1 | exon | 75253387 | 75253449 | 75253387 | ID=MS.gene49958.t1.exon11;Parent=MS.gene49958.t1 |
| chr1.1 | CDS | 75253387 | 75253449 | 75253387 | ID=cds.MS.gene49958.t1;Parent=MS.gene49958.t1 |
| Gene Sequence |
| Protein sequence |
