Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51868.t1 | XP_013449501.1 | 98.7 | 151 | 2 | 0 | 1 | 151 | 1 | 151 | 3.90E-56 | 228 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51868.t1 | Q8VZT0 | 88.1 | 151 | 18 | 0 | 1 | 151 | 1 | 151 | 7.4e-48 | 191.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51868.t1 | A0A072U1E4 | 98.7 | 151 | 2 | 0 | 1 | 151 | 1 | 151 | 2.8e-56 | 228.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049361 | MS.gene51868 | 0.871855 | 4.97E-67 | -1.69E-46 |
| MS.gene050134 | MS.gene51868 | 0.806843 | 6.75E-50 | -1.69E-46 |
| MS.gene051984 | MS.gene51868 | 0.812262 | 4.63E-51 | -1.69E-46 |
| MS.gene052664 | MS.gene51868 | 0.839017 | 2.04E-57 | -1.69E-46 |
| MS.gene052666 | MS.gene51868 | 0.826681 | 2.37E-54 | -1.69E-46 |
| MS.gene057641 | MS.gene51868 | 0.803324 | 3.68E-49 | -1.69E-46 |
| MS.gene057643 | MS.gene51868 | 0.815947 | 7.12E-52 | -1.69E-46 |
| MS.gene060483 | MS.gene51868 | 0.844801 | 6.04E-59 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51868.t1 | MTR_7g085640 | 99.010 | 202 | 2 | 0 | 1 | 202 | 1 | 202 | 4.46e-130 | 364 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51868.t1 | AT3G03920 | 80.921 | 152 | 29 | 0 | 51 | 202 | 51 | 202 | 5.05e-66 | 202 |
| MS.gene51868.t1 | AT5G18180 | 83.962 | 106 | 16 | 1 | 51 | 156 | 38 | 142 | 3.67e-59 | 184 |
Find 80 sgRNAs with CRISPR-Local
Find 153 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGGACGTGGTGGTGGTTTC+AGG | 0.152779 | 7.4:+21763796 | MS.gene51868:CDS |
| GGGAAAGTTGATGAAATATT+TGG | 0.233909 | 7.4:+21762513 | MS.gene51868:CDS |
| GGCCGTGGAGGTGGTGGTTT+TGG | 0.280477 | 7.4:+21763699 | MS.gene51868:CDS |
| CCACGGCCGCCACCTCTTGC+AGG | 0.283854 | 7.4:-21762119 | None:intergenic |
| GAGGACCTCTTCCACCCCTT+GGG | 0.305063 | 7.4:-21763767 | None:intergenic |
| CAGGGGAAGGGGCAGATTCT+AGG | 0.306220 | 7.4:+21763815 | MS.gene51868:CDS |
| GGAGGACCTCTTCCACCCCT+TGG | 0.349525 | 7.4:-21763768 | None:intergenic |
| AGAGGTGGCGGCCGTGGTGG+TGG | 0.384933 | 7.4:+21762125 | MS.gene51868:CDS |
| GCTAGAGGCAAGAGCTTCCT+AGG | 0.395733 | 7.4:-21762714 | None:intergenic |
| CTGCAAAACATGACTCAGAT+TGG | 0.398576 | 7.4:+21762492 | MS.gene51868:CDS |
| CCTGCAAGAGGTGGCGGCCG+TGG | 0.400024 | 7.4:+21762119 | MS.gene51868:CDS |
| AGAGGTGGTGGCCGTGGAGG+TGG | 0.402289 | 7.4:+21763723 | MS.gene51868:CDS |
| GGTGGTGGTTTCAGGGGAAG+GGG | 0.406506 | 7.4:+21763804 | MS.gene51868:CDS |
| AGAGGTGGAGGCCGTGGAGG+TGG | 0.421064 | 7.4:+21763690 | MS.gene51868:CDS |
| TTTGGTAGAGGTGGTGGCCG+TGG | 0.427705 | 7.4:+21763717 | MS.gene51868:CDS |
| GTTGCTACTTCATATGCATC+TGG | 0.429953 | 7.4:+21762672 | MS.gene51868:CDS |
| GGTGGTAGAGGTGGAGGCCG+TGG | 0.431868 | 7.4:+21763684 | MS.gene51868:CDS |
| GTGGTGGTGGTTTCAGGGGA+AGG | 0.432062 | 7.4:+21763802 | MS.gene51868:CDS |
| TTCGGCGGTGGACGTGGTGG+TGG | 0.435593 | 7.4:+21762224 | MS.gene51868:CDS |
| TATTGCAGGGGACAAGCATC+AGG | 0.437663 | 7.4:+21763663 | MS.gene51868:intron |
| GGTGGAGGCCGTGGAGGTGG+TGG | 0.442100 | 7.4:+21763693 | MS.gene51868:CDS |
| CCACCACCACGTCCACCTCT+TGG | 0.448869 | 7.4:-21763789 | None:intergenic |
| GGTGGTGGCCGTGGAGGTGG+TGG | 0.449672 | 7.4:+21763726 | MS.gene51868:CDS |
| GGTCGATTCGGCGGTGGACG+TGG | 0.450036 | 7.4:+21762218 | MS.gene51868:CDS |
| CACGGCCGCCACCTCTTGCA+GGG | 0.459887 | 7.4:-21762118 | None:intergenic |
| GGACGTGGTGGTGGTCGATT+CGG | 0.462851 | 7.4:+21762206 | MS.gene51868:CDS |
| GGCGGTGGACGTGGTGGTGG+AGG | 0.463762 | 7.4:+21762227 | MS.gene51868:CDS |
| TGGTGGTGGTTTCAGGGGAA+GGG | 0.471183 | 7.4:+21763803 | MS.gene51868:CDS |
| TGCAAAACATGACTCAGATT+GGG | 0.474986 | 7.4:+21762493 | MS.gene51868:CDS |
| GGTGGACGTGGTGGTGGAGG+TGG | 0.479988 | 7.4:+21762230 | MS.gene51868:CDS |
| TGGACGTGGTGGTGGTTTCA+GGG | 0.482520 | 7.4:+21763797 | MS.gene51868:CDS |
| CCAAGAGGTGGACGTGGTGG+TGG | 0.483436 | 7.4:+21763789 | MS.gene51868:CDS |
| GGACCTCCCTCCGAAGTTGT+AGG | 0.483894 | 7.4:+21762266 | MS.gene51868:CDS |
| AGGACCTCTTCCACCCCTTG+GGG | 0.496542 | 7.4:-21763766 | None:intergenic |
| GGCCGTGGTGGTGGATTCAG+AGG | 0.507562 | 7.4:+21762134 | MS.gene51868:CDS |
| GAAACTCACAGATTCATTGA+TGG | 0.508035 | 7.4:-21762538 | None:intergenic |
| CCACCACGTCCACCTCTTGG+AGG | 0.512302 | 7.4:-21763786 | None:intergenic |
| GGACAAGCATCAGGTGGTAG+AGG | 0.524486 | 7.4:+21763672 | MS.gene51868:CDS |
| TTTCTATTAAAATGATGGAA+GGG | 0.525814 | 7.4:+21762646 | MS.gene51868:CDS |
| AGGGGAAGGGGCAGATTCTA+GGG | 0.527082 | 7.4:+21763816 | MS.gene51868:CDS |
| TACCCACGAACCTACAACTT+CGG | 0.527744 | 7.4:-21762276 | None:intergenic |
| GCATCAGGTGGTAGAGGTGG+AGG | 0.530555 | 7.4:+21763678 | MS.gene51868:CDS |
| ACGTTTATCCATGCTTGTGA+AGG | 0.531931 | 7.4:+21762411 | MS.gene51868:CDS |
| GCAAGAGGTGGCGGCCGTGG+TGG | 0.532210 | 7.4:+21762122 | MS.gene51868:CDS |
| CAAGCATCAGGTGGTAGAGG+TGG | 0.537811 | 7.4:+21763675 | MS.gene51868:CDS |
| GGATTCAGAGGTGGCCGAGA+TGG | 0.541387 | 7.4:+21762146 | MS.gene51868:CDS |
| TTCAGAGGTGGCCGAGATGG+TGG | 0.544595 | 7.4:+21762149 | MS.gene51868:CDS |
| GGATTCAGAGGTGGTCGTGA+TGG | 0.545084 | 7.4:+21762170 | MS.gene51868:CDS |
| GGTGGTGGTCGATTCGGCGG+TGG | 0.547225 | 7.4:+21762212 | MS.gene51868:CDS |
| CAGCATCTCCTTCACAAGCA+TGG | 0.551580 | 7.4:-21762419 | None:intergenic |
| GGACCTCTTCCACCCCTTGG+GGG | 0.557362 | 7.4:-21763765 | None:intergenic |
| GGTAGAGGTGGAGGCCGTGG+AGG | 0.559108 | 7.4:+21763687 | MS.gene51868:CDS |
| AGAGGTGGTCGTGATGGAGG+AGG | 0.560037 | 7.4:+21762176 | MS.gene51868:CDS |
| TTCAGAGGTGGTCGTGATGG+AGG | 0.569077 | 7.4:+21762173 | MS.gene51868:CDS |
| ACGGCCGCCACCTCTTGCAG+GGG | 0.569761 | 7.4:-21762117 | None:intergenic |
| CACGAACCTACAACTTCGGA+GGG | 0.573435 | 7.4:-21762272 | None:intergenic |
| CGTGGTGGTGGTCGATTCGG+CGG | 0.575172 | 7.4:+21762209 | MS.gene51868:CDS |
| AAACTCACAGATTCATTGAT+GGG | 0.576692 | 7.4:-21762537 | None:intergenic |
| GGCCGAGATGGTGGATTCAG+AGG | 0.581009 | 7.4:+21762158 | MS.gene51868:CDS |
| GGTAGAGGTGGTGGCCGTGG+AGG | 0.585512 | 7.4:+21763720 | MS.gene51868:CDS |
| GGAGGTGGATTTCGTGATGA+AGG | 0.587672 | 7.4:+21762245 | MS.gene51868:CDS |
| GTGAGAACATACTTCGGCTG+AGG | 0.591544 | 7.4:-21762747 | None:intergenic |
| CACGAAAACCACCACCTCCA+CGG | 0.595827 | 7.4:-21763734 | None:intergenic |
| CGATTCGGCGGTGGACGTGG+TGG | 0.605050 | 7.4:+21762221 | MS.gene51868:CDS |
| CCACGAACCTACAACTTCGG+AGG | 0.605907 | 7.4:-21762273 | None:intergenic |
| CCTCCAAGAGGTGGACGTGG+TGG | 0.609010 | 7.4:+21763786 | MS.gene51868:CDS |
| GGAAGAGGTCCTCCAAGAGG+TGG | 0.617947 | 7.4:+21763777 | MS.gene51868:CDS |
| GGTCCTCCAAGAGGTGGACG+TGG | 0.619296 | 7.4:+21763783 | MS.gene51868:CDS |
| CGAGATGGTGGATTCAGAGG+TGG | 0.625804 | 7.4:+21762161 | MS.gene51868:CDS |
| CACCTCTGAATCCACCATCT+CGG | 0.628054 | 7.4:-21762160 | None:intergenic |
| CTAGAGGCAAGAGCTTCCTA+GGG | 0.630481 | 7.4:-21762713 | None:intergenic |
| TACCAAAACCACCACCTCCA+CGG | 0.632501 | 7.4:-21763701 | None:intergenic |
| GGACGTGGTGGTGGTTTCAG+GGG | 0.633942 | 7.4:+21763798 | MS.gene51868:CDS |
| TGAGGAAGAAATCTTGCTAG+AGG | 0.638685 | 7.4:-21762729 | None:intergenic |
| CGGCCGCCACCTCTTGCAGG+GGG | 0.639435 | 7.4:-21762116 | None:intergenic |
| CGTGGTGGTGGATTCAGAGG+TGG | 0.644993 | 7.4:+21762137 | MS.gene51868:CDS |
| GAACCTACAACTTCGGAGGG+AGG | 0.658354 | 7.4:-21762269 | None:intergenic |
| GGTGGAAGAGGTCCTCCAAG+AGG | 0.663197 | 7.4:+21763774 | MS.gene51868:CDS |
| TGCAGGGGACAAGCATCAGG+TGG | 0.672433 | 7.4:+21763666 | MS.gene51868:intron |
| CACCTCTGAATCCACCACCA+CGG | 0.697043 | 7.4:-21762136 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CAAATATCAAAAACTAATTT+TGG | - | chr7.4:21763331-21763350 | None:intergenic | 15.0% |
| !!! | CTAATATCAAAAACTAATTT+TGG | - | chr7.4:21763457-21763476 | None:intergenic | 15.0% |
| !!! | TATTCATTTTTTCAGTAAAA+CGG | - | chr7.4:21763138-21763157 | None:intergenic | 15.0% |
| !!! | TTTTTGATATTTGCTATATA+CGG | + | chr7.4:21763338-21763357 | MS.gene51868:intron | 15.0% |
| !! | ACATCAGATAAAAATTAGAA+GGG | + | chr7.4:21763403-21763422 | MS.gene51868:intron | 20.0% |
| !! | CATAAACAAGGAAATTAATT+AGG | - | chr7.4:21762852-21762871 | None:intergenic | 20.0% |
| !! | TACATCAGATAAAAATTAGA+AGG | + | chr7.4:21763402-21763421 | MS.gene51868:intron | 20.0% |
| !!! | AAAAAATGGAATTTTCTCAT+TGG | - | chr7.4:21762457-21762476 | None:intergenic | 20.0% |
| !!! | ATTTTTTATTGGCTTTTGAA+AGG | + | chr7.4:21763600-21763619 | MS.gene51868:intron | 20.0% |
| !!! | CTTATATGTTTTGTTGAAAT+GGG | + | chr7.4:21762584-21762603 | MS.gene51868:intron | 20.0% |
| !!! | GTACTTTTCTATTAAAATGA+TGG | + | chr7.4:21762641-21762660 | MS.gene51868:intron | 20.0% |
| !!! | TAAATAGGAGCATTAAAAAA+TGG | - | chr7.4:21762471-21762490 | None:intergenic | 20.0% |
| !!! | TCTTATATGTTTTGTTGAAA+TGG | + | chr7.4:21762583-21762602 | MS.gene51868:intron | 20.0% |
| !!! | TTTCTATTAAAATGATGGAA+GGG | + | chr7.4:21762646-21762665 | MS.gene51868:CDS | 20.0% |
| !!! | TTTTCTATTAAAATGATGGA+AGG | + | chr7.4:21762645-21762664 | MS.gene51868:CDS | 20.0% |
| !!! | TTTTTTATTGGCTTTTGAAA+GGG | + | chr7.4:21763601-21763620 | MS.gene51868:intron | 20.0% |
| ! | AATAAATTGTTGTATGCAGT+TGG | + | chr7.4:21763564-21763583 | MS.gene51868:intron | 25.0% |
| ! | AATTGACTGATTATTATTGC+AGG | + | chr7.4:21763649-21763668 | MS.gene51868:intron | 25.0% |
| ! | ATACTTGTTTGTTTGTTCAA+AGG | + | chr7.4:21763191-21763210 | MS.gene51868:intron | 25.0% |
| ! | ATCTGATGTAACATCAATTA+GGG | - | chr7.4:21763392-21763411 | None:intergenic | 25.0% |
| ! | ATTGACTGATTATTATTGCA+GGG | + | chr7.4:21763650-21763669 | MS.gene51868:intron | 25.0% |
| ! | CATACAAAACAATTAACACA+AGG | - | chr7.4:21763526-21763545 | None:intergenic | 25.0% |
| ! | CATCAGATAAAAATTAGAAG+GGG | + | chr7.4:21763404-21763423 | MS.gene51868:intron | 25.0% |
| ! | TATCTGATGTAACATCAATT+AGG | - | chr7.4:21763393-21763412 | None:intergenic | 25.0% |
| ! | TCAAAGGATTCTTATTGTTA+TGG | + | chr7.4:21763207-21763226 | MS.gene51868:intron | 25.0% |
| !! | AATTTCCTTGTTTATGTTTG+TGG | + | chr7.4:21762856-21762875 | MS.gene51868:intron | 25.0% |
| !! | ACTTAGACAGGTTAATTTTA+AGG | - | chr7.4:21762775-21762794 | None:intergenic | 25.0% |
| !! | ATTGTACAGTTGATGTTAAA+TGG | + | chr7.4:21762795-21762814 | MS.gene51868:intron | 25.0% |
| !! | TTGTACAGTTGATGTTAAAT+GGG | + | chr7.4:21762796-21762815 | MS.gene51868:intron | 25.0% |
| !!! | CTTTGCTTGGAATTTTTTAT+TGG | + | chr7.4:21763589-21763608 | MS.gene51868:intron | 25.0% |
| AAACTCACAGATTCATTGAT+GGG | - | chr7.4:21762540-21762559 | None:intergenic | 30.0% | |
| ACAATTAACACAAGGAAATG+TGG | - | chr7.4:21763518-21763537 | None:intergenic | 30.0% | |
| CAATTAACACAAGGAAATGT+GGG | - | chr7.4:21763517-21763536 | None:intergenic | 30.0% | |
| CATTACCACAAACATAAACA+AGG | - | chr7.4:21762864-21762883 | None:intergenic | 30.0% | |
| TTGACTGATTATTATTGCAG+GGG | + | chr7.4:21763651-21763670 | MS.gene51868:intron | 30.0% | |
| ! | CTATTTCTTGATTGCTATGT+TGG | + | chr7.4:21762910-21762929 | MS.gene51868:intron | 30.0% |
| ! | GTCATGTTTTGCAGATAAAT+AGG | - | chr7.4:21762486-21762505 | None:intergenic | 30.0% |
| !! | GGGAAAGTTGATGAAATATT+TGG | + | chr7.4:21762513-21762532 | MS.gene51868:CDS | 30.0% |
| !! | GTTTAATTTGATGTTTGCAG+AGG | + | chr7.4:21762383-21762402 | MS.gene51868:intron | 30.0% |
| !! | TGAAAGGGTATTACAATTGA+TGG | + | chr7.4:21763616-21763635 | MS.gene51868:intron | 30.0% |
| AAAATTAGACATCTGCAGCA+TGG | - | chr7.4:21763253-21763272 | None:intergenic | 35.0% | |
| ATCTGTGAGTTTCTCTTTGT+TGG | + | chr7.4:21762548-21762567 | MS.gene51868:intron | 35.0% | |
| CAACTGTACAATACTTAGAC+AGG | - | chr7.4:21762787-21762806 | None:intergenic | 35.0% | |
| GAAACTCACAGATTCATTGA+TGG | - | chr7.4:21762541-21762560 | None:intergenic | 35.0% | |
| GCAGATTACATCAAGACAAA+AGG | - | chr7.4:21763164-21763183 | None:intergenic | 35.0% | |
| TGCAAAACATGACTCAGATT+GGG | + | chr7.4:21762493-21762512 | MS.gene51868:CDS | 35.0% | |
| ! | ACAAGTTTTACATTGACCCT+AGG | + | chr7.4:21762697-21762716 | MS.gene51868:CDS | 35.0% |
| !! | GTCTAATTTTGAGTGTGAGA+GGG | + | chr7.4:21763263-21763282 | MS.gene51868:intron | 35.0% |
| !! | TGTCTAATTTTGAGTGTGAG+AGG | + | chr7.4:21763262-21763281 | MS.gene51868:intron | 35.0% |
| AAGGCAGTGAGAACATACTT+CGG | - | chr7.4:21762756-21762775 | None:intergenic | 40.0% | |
| ACATCAATTAGGGACAGTAC+AGG | - | chr7.4:21763382-21763401 | None:intergenic | 40.0% | |
| ACGTTTATCCATGCTTGTGA+AGG | + | chr7.4:21762411-21762430 | MS.gene51868:CDS | 40.0% | |
| CAGTTCACACATTCTTCACA+TGG | - | chr7.4:21763000-21763019 | None:intergenic | 40.0% | |
| CTGCAAAACATGACTCAGAT+TGG | + | chr7.4:21762492-21762511 | MS.gene51868:CDS | 40.0% | |
| TAACACAAGGAAATGTGGGA+CGG | - | chr7.4:21763513-21763532 | None:intergenic | 40.0% | |
| TATGCAGTTGGATCTTTGCT+TGG | + | chr7.4:21763576-21763595 | MS.gene51868:intron | 40.0% | |
| TGAGGAAGAAATCTTGCTAG+AGG | - | chr7.4:21762732-21762751 | None:intergenic | 40.0% | |
| ! | GTTGCTACTTCATATGCATC+TGG | + | chr7.4:21762672-21762691 | MS.gene51868:CDS | 40.0% |
| GGTTACACTCTAGCATGTAG+AGG | - | chr7.4:21763486-21763505 | None:intergenic | 45.0% | |
| TACCCACGAACCTACAACTT+CGG | - | chr7.4:21762279-21762298 | None:intergenic | 45.0% | |
| !! | TTGAGTGTGAGAGGGTGTTA+AGG | + | chr7.4:21763271-21763290 | MS.gene51868:intron | 45.0% |
| AAGGAAATGTGGGACGGTAC+AGG | - | chr7.4:21763507-21763526 | None:intergenic | 50.0% | |
| CACCTCTGAATCCACCATCT+CGG | - | chr7.4:21762163-21762182 | None:intergenic | 50.0% | |
| CACGAACCTACAACTTCGGA+GGG | - | chr7.4:21762275-21762294 | None:intergenic | 50.0% | |
| CAGCATCTCCTTCACAAGCA+TGG | - | chr7.4:21762422-21762441 | None:intergenic | 50.0% | |
| CTAGAGGCAAGAGCTTCCTA+GGG | - | chr7.4:21762716-21762735 | None:intergenic | 50.0% | |
| CTCCGAAGTTGTAGGTTCGT+GGG | + | chr7.4:21762274-21762293 | MS.gene51868:intron | 50.0% | |
| GTGAGAACATACTTCGGCTG+AGG | - | chr7.4:21762750-21762769 | None:intergenic | 50.0% | |
| TACCAAAACCACCACCTCCA+CGG | - | chr7.4:21763704-21763723 | None:intergenic | 50.0% | |
| TATTGCAGGGGACAAGCATC+AGG | + | chr7.4:21763663-21763682 | MS.gene51868:intron | 50.0% | |
| ! | GGAGGTGGATTTCGTGATGA+AGG | + | chr7.4:21762245-21762264 | MS.gene51868:CDS | 50.0% |
| !! | AGAGGGTGTTAAGGAGAGGT+GGG | + | chr7.4:21763280-21763299 | MS.gene51868:intron | 50.0% |
| !! | AGGTGGTGGTTTTCGTGGAA+GGG | + | chr7.4:21763740-21763759 | MS.gene51868:CDS | 50.0% |
| !! | TGTGAGAGGGTGTTAAGGAG+AGG | + | chr7.4:21763276-21763295 | MS.gene51868:intron | 50.0% |
| CAAGCATCAGGTGGTAGAGG+TGG | + | chr7.4:21763675-21763694 | MS.gene51868:CDS | 55.0% | |
| CACCTCTGAATCCACCACCA+CGG | - | chr7.4:21762139-21762158 | None:intergenic | 55.0% | |
| CACGAAAACCACCACCTCCA+CGG | - | chr7.4:21763737-21763756 | None:intergenic | 55.0% | |
| CCACGAACCTACAACTTCGG+AGG | - | chr7.4:21762276-21762295 | None:intergenic | 55.0% | |
| CCTCCGAAGTTGTAGGTTCG+TGG | + | chr7.4:21762273-21762292 | MS.gene51868:intron | 55.0% | |
| GAACCTACAACTTCGGAGGG+AGG | - | chr7.4:21762272-21762291 | None:intergenic | 55.0% | |
| GCTAGAGGCAAGAGCTTCCT+AGG | - | chr7.4:21762717-21762736 | None:intergenic | 55.0% | |
| GGACAAGCATCAGGTGGTAG+AGG | + | chr7.4:21763672-21763691 | MS.gene51868:CDS | 55.0% | |
| GGATTCAGAGGTGGTCGTGA+TGG | + | chr7.4:21762170-21762189 | MS.gene51868:CDS | 55.0% | |
| TTCAGAGGTGGTCGTGATGG+AGG | + | chr7.4:21762173-21762192 | MS.gene51868:CDS | 55.0% | |
| !! | CGAGATGGTGGATTCAGAGG+TGG | + | chr7.4:21762161-21762180 | MS.gene51868:CDS | 55.0% |
| !! | CGTGATGGAGGAGGTTTTCG+TGG | + | chr7.4:21762185-21762204 | MS.gene51868:CDS | 55.0% |
| !! | GAGAGGGTGTTAAGGAGAGG+TGG | + | chr7.4:21763279-21763298 | MS.gene51868:intron | 55.0% |
| !! | GAGGTGGTGGTTTTCGTGGA+AGG | + | chr7.4:21763739-21763758 | MS.gene51868:CDS | 55.0% |
| !! | GGTGGTGGTTTTCGTGGAAG+GGG | + | chr7.4:21763741-21763760 | MS.gene51868:CDS | 55.0% |
| !! | TGGACGTGGTGGTGGTTTCA+GGG | + | chr7.4:21763797-21763816 | MS.gene51868:CDS | 55.0% |
| !! | TGGTGGTGGTTTCAGGGGAA+GGG | + | chr7.4:21763803-21763822 | MS.gene51868:CDS | 55.0% |
| !!! | GGAGGTGGTGGTTTTGGTAG+AGG | + | chr7.4:21763705-21763724 | MS.gene51868:CDS | 55.0% |
| !!! | GGTGGTGGTTTTGGTAGAGG+TGG | + | chr7.4:21763708-21763727 | MS.gene51868:CDS | 55.0% |
| !!! | GGTGGTTTTGGTAGAGGTGG+TGG | + | chr7.4:21763711-21763730 | MS.gene51868:CDS | 55.0% |
| AGGACCTCTTCCACCCCTTG+GGG | - | chr7.4:21763769-21763788 | None:intergenic | 60.0% | |
| ATGAGACCCCCTGCAAGAGG+TGG | + | chr7.4:21762110-21762129 | MS.gene51868:CDS | 60.0% | |
| GAGGACCTCTTCCACCCCTT+GGG | - | chr7.4:21763770-21763789 | None:intergenic | 60.0% | |
| GCATCAGGTGGTAGAGGTGG+AGG | + | chr7.4:21763678-21763697 | MS.gene51868:CDS | 60.0% | |
| GGAAGAGGTCCTCCAAGAGG+TGG | + | chr7.4:21763777-21763796 | MS.gene51868:CDS | 60.0% | |
| GGACCTCCCTCCGAAGTTGT+AGG | + | chr7.4:21762266-21762285 | MS.gene51868:CDS | 60.0% | |
| GGATTCAGAGGTGGCCGAGA+TGG | + | chr7.4:21762146-21762165 | MS.gene51868:CDS | 60.0% | |
| GGTGGAAGAGGTCCTCCAAG+AGG | + | chr7.4:21763774-21763793 | MS.gene51868:CDS | 60.0% | |
| TGCAGGGGACAAGCATCAGG+TGG | + | chr7.4:21763666-21763685 | MS.gene51868:intron | 60.0% | |
| TTCAGAGGTGGCCGAGATGG+TGG | + | chr7.4:21762149-21762168 | MS.gene51868:CDS | 60.0% | |
| ! | AGAGGTGGTCGTGATGGAGG+AGG | + | chr7.4:21762176-21762195 | MS.gene51868:CDS | 60.0% |
| ! | GGAGGAGGTTTTCGTGGACG+TGG | + | chr7.4:21762191-21762210 | MS.gene51868:CDS | 60.0% |
| ! | GGAGGTTTTCGTGGACGTGG+TGG | + | chr7.4:21762194-21762213 | MS.gene51868:CDS | 60.0% |
| ! | GGTGGTGGTTTCAGGGGAAG+GGG | + | chr7.4:21763804-21763823 | MS.gene51868:CDS | 60.0% |
| ! | GGTTTTCGTGGACGTGGTGG+TGG | + | chr7.4:21762197-21762216 | MS.gene51868:CDS | 60.0% |
| ! | TTTGGTAGAGGTGGTGGCCG+TGG | + | chr7.4:21763717-21763736 | MS.gene51868:CDS | 60.0% |
| !! | CGTGGAGGTGGTGGTTTTCG+TGG | + | chr7.4:21763735-21763754 | MS.gene51868:CDS | 60.0% |
| !! | CGTGGTGGTGGATTCAGAGG+TGG | + | chr7.4:21762137-21762156 | MS.gene51868:CDS | 60.0% |
| !! | GGACGTGGTGGTGGTCGATT+CGG | + | chr7.4:21762206-21762225 | MS.gene51868:CDS | 60.0% |
| !! | GGACGTGGTGGTGGTTTCAG+GGG | + | chr7.4:21763798-21763817 | MS.gene51868:CDS | 60.0% |
| !! | GGCCGAGATGGTGGATTCAG+AGG | + | chr7.4:21762158-21762177 | MS.gene51868:CDS | 60.0% |
| !! | GTGGACGTGGTGGTGGTTTC+AGG | + | chr7.4:21763796-21763815 | MS.gene51868:CDS | 60.0% |
| !! | GTGGTGGTGGTTTCAGGGGA+AGG | + | chr7.4:21763802-21763821 | MS.gene51868:CDS | 60.0% |
| AGACCCCCTGCAAGAGGTGG+CGG | + | chr7.4:21762113-21762132 | MS.gene51868:CDS | 65.0% | |
| CCAAGAGGTGGACGTGGTGG+TGG | + | chr7.4:21763789-21763808 | MS.gene51868:CDS | 65.0% | |
| CCACCACCACGTCCACCTCT+TGG | - | chr7.4:21763792-21763811 | None:intergenic | 65.0% | |
| CCACCACGTCCACCTCTTGG+AGG | - | chr7.4:21763789-21763808 | None:intergenic | 65.0% | |
| CCTCCAAGAGGTGGACGTGG+TGG | + | chr7.4:21763786-21763805 | MS.gene51868:CDS | 65.0% | |
| GGACCTCTTCCACCCCTTGG+GGG | - | chr7.4:21763768-21763787 | None:intergenic | 65.0% | |
| GGAGGACCTCTTCCACCCCT+TGG | - | chr7.4:21763771-21763790 | None:intergenic | 65.0% | |
| GGTCCTCCAAGAGGTGGACG+TGG | + | chr7.4:21763783-21763802 | MS.gene51868:CDS | 65.0% | |
| TCGTGGAAGGGGTCCCCCAA+GGG | + | chr7.4:21763752-21763771 | MS.gene51868:CDS | 65.0% | |
| TTCGTGGAAGGGGTCCCCCA+AGG | + | chr7.4:21763751-21763770 | MS.gene51868:CDS | 65.0% | |
| !! | CGTGGTGGTGGTCGATTCGG+CGG | + | chr7.4:21762209-21762228 | MS.gene51868:CDS | 65.0% |
| !! | GGCCGTGGAGGTGGTGGTTT+TGG | + | chr7.4:21763699-21763718 | MS.gene51868:CDS | 65.0% |
| !! | GGCCGTGGTGGTGGATTCAG+AGG | + | chr7.4:21762134-21762153 | MS.gene51868:CDS | 65.0% |
| ACGGCCGCCACCTCTTGCAG+GGG | - | chr7.4:21762120-21762139 | None:intergenic | 70.0% | |
| AGAGGTGGAGGCCGTGGAGG+TGG | + | chr7.4:21763690-21763709 | MS.gene51868:CDS | 70.0% | |
| CACGGCCGCCACCTCTTGCA+GGG | - | chr7.4:21762121-21762140 | None:intergenic | 70.0% | |
| CGTGGAAGGGGTCCCCCAAG+GGG | + | chr7.4:21763753-21763772 | MS.gene51868:CDS | 70.0% | |
| GGTAGAGGTGGAGGCCGTGG+AGG | + | chr7.4:21763687-21763706 | MS.gene51868:CDS | 70.0% | |
| GGTCCCCCAAGGGGTGGAAG+AGG | + | chr7.4:21763762-21763781 | MS.gene51868:CDS | 70.0% | |
| GGTGGTAGAGGTGGAGGCCG+TGG | + | chr7.4:21763684-21763703 | MS.gene51868:CDS | 70.0% | |
| TTCGGCGGTGGACGTGGTGG+TGG | + | chr7.4:21762224-21762243 | MS.gene51868:CDS | 70.0% | |
| ! | AGAGGTGGTGGCCGTGGAGG+TGG | + | chr7.4:21763723-21763742 | MS.gene51868:CDS | 70.0% |
| ! | CGATTCGGCGGTGGACGTGG+TGG | + | chr7.4:21762221-21762240 | MS.gene51868:CDS | 70.0% |
| ! | GGTAGAGGTGGTGGCCGTGG+AGG | + | chr7.4:21763720-21763739 | MS.gene51868:CDS | 70.0% |
| !! | GGTCGATTCGGCGGTGGACG+TGG | + | chr7.4:21762218-21762237 | MS.gene51868:CDS | 70.0% |
| !! | GGTGGACGTGGTGGTGGAGG+TGG | + | chr7.4:21762230-21762249 | MS.gene51868:CDS | 70.0% |
| !! | GGTGGTGGTCGATTCGGCGG+TGG | + | chr7.4:21762212-21762231 | MS.gene51868:CDS | 70.0% |
| CCACGGCCGCCACCTCTTGC+AGG | - | chr7.4:21762122-21762141 | None:intergenic | 75.0% | |
| CGGCCGCCACCTCTTGCAGG+GGG | - | chr7.4:21762119-21762138 | None:intergenic | 75.0% | |
| GGAAGGGGTCCCCCAAGGGG+TGG | + | chr7.4:21763756-21763775 | MS.gene51868:CDS | 75.0% | |
| GGTGGAGGCCGTGGAGGTGG+TGG | + | chr7.4:21763693-21763712 | MS.gene51868:CDS | 75.0% | |
| ! | AGAGGTGGCGGCCGTGGTGG+TGG | + | chr7.4:21762125-21762144 | MS.gene51868:CDS | 75.0% |
| ! | CCTGCAAGAGGTGGCGGCCG+TGG | + | chr7.4:21762119-21762138 | MS.gene51868:CDS | 75.0% |
| ! | GCAAGAGGTGGCGGCCGTGG+TGG | + | chr7.4:21762122-21762141 | MS.gene51868:CDS | 75.0% |
| ! | GGTGGTGGCCGTGGAGGTGG+TGG | + | chr7.4:21763726-21763745 | MS.gene51868:CDS | 75.0% |
| !! | GGCGGTGGACGTGGTGGTGG+AGG | + | chr7.4:21762227-21762246 | MS.gene51868:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 21762110 | 21763836 | 21762110 | ID=MS.gene51868 |
| chr7.4 | mRNA | 21762110 | 21763836 | 21762110 | ID=MS.gene51868.t1;Parent=MS.gene51868 |
| chr7.4 | exon | 21762110 | 21762287 | 21762110 | ID=MS.gene51868.t1.exon1;Parent=MS.gene51868.t1 |
| chr7.4 | CDS | 21762110 | 21762287 | 21762110 | ID=cds.MS.gene51868.t1;Parent=MS.gene51868.t1 |
| chr7.4 | exon | 21762403 | 21762551 | 21762403 | ID=MS.gene51868.t1.exon2;Parent=MS.gene51868.t1 |
| chr7.4 | CDS | 21762403 | 21762551 | 21762403 | ID=cds.MS.gene51868.t1;Parent=MS.gene51868.t1 |
| chr7.4 | exon | 21762642 | 21762757 | 21762642 | ID=MS.gene51868.t1.exon3;Parent=MS.gene51868.t1 |
| chr7.4 | CDS | 21762642 | 21762757 | 21762642 | ID=cds.MS.gene51868.t1;Parent=MS.gene51868.t1 |
| chr7.4 | exon | 21763671 | 21763836 | 21763671 | ID=MS.gene51868.t1.exon4;Parent=MS.gene51868.t1 |
| chr7.4 | CDS | 21763671 | 21763836 | 21763671 | ID=cds.MS.gene51868.t1;Parent=MS.gene51868.t1 |
| Gene Sequence |
| Protein sequence |
