Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene033017.t1 | AFK35508.1 | 96.8 | 157 | 1 | 1 | 1 | 157 | 1 | 153 | 3.10E-69 | 271.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene033017.t1 | Q9LEY9 | 62.8 | 156 | 57 | 1 | 1 | 156 | 1 | 155 | 1.1e-46 | 187.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene033017.t1 | G7JT47 | 96.8 | 157 | 1 | 1 | 1 | 157 | 1 | 153 | 2.2e-69 | 271.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene033017.t1 | MTR_4g112780 | 97.452 | 157 | 0 | 1 | 1 | 157 | 1 | 153 | 1.26e-106 | 301 |
MS.gene033017.t1 | MTR_4g114330 | 34.483 | 116 | 75 | 1 | 21 | 136 | 4 | 118 | 2.17e-14 | 66.2 |
MS.gene033017.t1 | MTR_5g077600 | 72.727 | 44 | 11 | 1 | 105 | 148 | 23 | 65 | 6.86e-14 | 63.2 |
MS.gene033017.t1 | MTR_0011s0330 | 34.821 | 112 | 72 | 1 | 25 | 136 | 8 | 118 | 2.09e-13 | 63.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene033017.t1 | AT5G08180 | 68.153 | 157 | 49 | 1 | 1 | 157 | 1 | 156 | 4.91e-76 | 224 |
MS.gene033017.t1 | AT5G08180 | 68.153 | 157 | 49 | 1 | 1 | 157 | 1 | 156 | 4.91e-76 | 224 |
MS.gene033017.t1 | AT4G12600 | 34.188 | 117 | 76 | 1 | 20 | 136 | 3 | 118 | 5.16e-13 | 62.4 |
MS.gene033017.t1 | AT5G20160 | 35.714 | 112 | 71 | 1 | 25 | 136 | 8 | 118 | 5.27e-13 | 62.4 |
MS.gene033017.t1 | AT4G22380 | 34.821 | 112 | 72 | 1 | 25 | 136 | 8 | 118 | 9.05e-13 | 62.0 |
Find 32 sgRNAs with CRISPR-Local
Find 107 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGTATAAGGCGAGGTCAAAA+AGG | 0.296737 | 8.4:+17507550 | MS.gene033017:CDS |
CCCATTGCAAAACCTCTTGC+TGG | 0.348880 | 8.4:+17506719 | MS.gene033017:CDS |
TGAGATAGTTCACCCTTTGA+AGG | 0.372203 | 8.4:-17508612 | None:intergenic |
AGGAGGTGGTTAAAAGTATA+AGG | 0.394940 | 8.4:+17507536 | MS.gene033017:CDS |
GTGCATAAAGAGAGGAGTTA+AGG | 0.402782 | 8.4:+17507516 | MS.gene033017:CDS |
TCCTTATCCTCGCATAAAAT+CGG | 0.425786 | 8.4:-17507816 | None:intergenic |
TGCAGAGTGTGTATTATAGC+TGG | 0.425932 | 8.4:+17507759 | MS.gene033017:intron |
TAGTTCACCCTTTGAAGGCT+TGG | 0.444404 | 8.4:-17508607 | None:intergenic |
ACATGAGTGATGACATCAAT+AGG | 0.449731 | 8.4:-17507792 | None:intergenic |
TTAGATGAGACATATACATA+TGG | 0.460404 | 8.4:-17507843 | None:intergenic |
GTCCAGGACCTTGCAACGGC+AGG | 0.468819 | 8.4:+17508546 | MS.gene033017:intron |
CGACAGTGAAGGTGAGAAAT+CGG | 0.483487 | 8.4:+17506655 | MS.gene033017:CDS |
GTGATGACCAAGCCTTCAAA+GGG | 0.500756 | 8.4:+17508600 | MS.gene033017:CDS |
TCGTTGCTCCTGCCGTTGCA+AGG | 0.501816 | 8.4:-17508554 | None:intergenic |
AGTGATGACCAAGCCTTCAA+AGG | 0.525648 | 8.4:+17508599 | MS.gene033017:CDS |
ACACTCAAGCTTGTTAAAAG+AGG | 0.527156 | 8.4:+17506761 | MS.gene033017:CDS |
AAAGAGAGGAGTTAAGGAGG+TGG | 0.543156 | 8.4:+17507522 | MS.gene033017:CDS |
CGGTGCAGAGGGAGAAGGAG+AGG | 0.549279 | 8.4:+17506675 | MS.gene033017:CDS |
CATAAAGAGAGGAGTTAAGG+AGG | 0.557458 | 8.4:+17507519 | MS.gene033017:CDS |
GAAAGCTTCTTTCCAGCAAG+AGG | 0.560382 | 8.4:-17506731 | None:intergenic |
GCAGAGTGTGTATTATAGCT+GGG | 0.568819 | 8.4:+17507760 | MS.gene033017:intron |
ATCACTAAAACACAACAAGT+TGG | 0.571248 | 8.4:-17508582 | None:intergenic |
GAAGGAGAGGAAGAAGATGC+AGG | 0.571568 | 8.4:+17506688 | MS.gene033017:CDS |
GAAATCGGTGCAGAGGGAGA+AGG | 0.585599 | 8.4:+17506670 | MS.gene033017:CDS |
AAGGTGAGAAATCGGTGCAG+AGG | 0.589190 | 8.4:+17506663 | MS.gene033017:CDS |
AGGTGAGAAATCGGTGCAGA+GGG | 0.594395 | 8.4:+17506664 | MS.gene033017:CDS |
AAAGGGTGAACTATCTCAAG+AGG | 0.620179 | 8.4:+17508617 | MS.gene033017:CDS |
GAAAACAAGTGCATAAAGAG+AGG | 0.625540 | 8.4:+17507508 | MS.gene033017:CDS |
ATTTGTCCAGGACCTTGCAA+CGG | 0.636321 | 8.4:+17508542 | MS.gene033017:intron |
CAACGGCAGGAGCAACGAAG+AGG | 0.638950 | 8.4:+17508559 | MS.gene033017:CDS |
GAAATGGGAAGCGACAGTGA+AGG | 0.681973 | 8.4:+17506644 | None:intergenic |
GTGGTTAAAAGTATAAGGCG+AGG | 0.693539 | 8.4:+17507541 | MS.gene033017:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ACAATTGAAACATAAAAAAT+GGG | - | chr8.4:17507697-17507716 | None:intergenic | 15.0% |
!! | TTATAAGCTATAAACTATAT+TGG | + | chr8.4:17507115-17507134 | MS.gene033017:intron | 15.0% |
!! | TTCCAAAAAAAAAGAAAAAA+CGG | - | chr8.4:17507356-17507375 | None:intergenic | 15.0% |
!!! | TTTTTTCTTTTTTTTTGGAA+TGG | + | chr8.4:17507356-17507375 | MS.gene033017:intron | 15.0% |
!! | ATAGCTTATAAAAACAACTT+AGG | - | chr8.4:17507106-17507125 | None:intergenic | 20.0% |
!! | CACAATTGAAACATAAAAAA+TGG | - | chr8.4:17507698-17507717 | None:intergenic | 20.0% |
!! | CTATTGTATTCATAATATAC+AGG | - | chr8.4:17508281-17508300 | None:intergenic | 20.0% |
!! | TACATAAATCTTTGTCTTAT+GGG | + | chr8.4:17507450-17507469 | MS.gene033017:intron | 20.0% |
!! | TCATAAATAACTAAAAGTTG+AGG | + | chr8.4:17508017-17508036 | MS.gene033017:intron | 20.0% |
!! | TTACATAAATCTTTGTCTTA+TGG | + | chr8.4:17507449-17507468 | MS.gene033017:intron | 20.0% |
!! | TTCCATTCAAATATGTTATA+TGG | - | chr8.4:17508141-17508160 | None:intergenic | 20.0% |
!!! | CATTTTTTATGTTTCAATTG+TGG | + | chr8.4:17507696-17507715 | MS.gene033017:intron | 20.0% |
!!! | GTTGATTCTGTAATTTAAAA+AGG | + | chr8.4:17507392-17507411 | MS.gene033017:intron | 20.0% |
!!! | TAATGAAAATCGTTAATTTG+TGG | + | chr8.4:17506821-17506840 | MS.gene033017:intron | 20.0% |
!!! | TTTCAGTTTCGTTTTAAATA+TGG | + | chr8.4:17508385-17508404 | MS.gene033017:intron | 20.0% |
! | AATAAGTTGTTTATCCAAAC+AGG | - | chr8.4:17507008-17507027 | None:intergenic | 25.0% |
! | AGAAGAAGGCAAAAAAATAA+GGG | - | chr8.4:17507736-17507755 | None:intergenic | 25.0% |
! | ATATGGTATTAAGAGAAACA+TGG | + | chr8.4:17508402-17508421 | MS.gene033017:intron | 25.0% |
! | ATTCATAACATACCATTCTT+GGG | - | chr8.4:17507268-17507287 | None:intergenic | 25.0% |
! | ATTTATCTTCCTTGACAAAA+TGG | + | chr8.4:17507649-17507668 | MS.gene033017:intron | 25.0% |
! | GAATTGTTGATATACTATGT+AGG | - | chr8.4:17508353-17508372 | None:intergenic | 25.0% |
! | GTCCATATAACATATTTGAA+TGG | + | chr8.4:17508136-17508155 | MS.gene033017:intron | 25.0% |
! | TTAGATGAGACATATACATA+TGG | - | chr8.4:17507846-17507865 | None:intergenic | 25.0% |
!! | CTTATTCTAAAGAGAGATTA+GGG | - | chr8.4:17507943-17507962 | None:intergenic | 25.0% |
!! | TCTTATTCTAAAGAGAGATT+AGG | - | chr8.4:17507944-17507963 | None:intergenic | 25.0% |
!! | TTTCAAAGTACTAGAGTAAT+TGG | - | chr8.4:17508498-17508517 | None:intergenic | 25.0% |
!!! | AATTTTTGAGATATTTGTCC+AGG | + | chr8.4:17508530-17508549 | MS.gene033017:intron | 25.0% |
!!! | ATCAACTTGTTATGGAATTA+AGG | + | chr8.4:17506981-17507000 | MS.gene033017:intron | 25.0% |
!!! | CTTCAAAAATCAACTTGTTA+TGG | + | chr8.4:17506973-17506992 | MS.gene033017:intron | 25.0% |
!!! | TCAACTTGTTATGGAATTAA+GGG | + | chr8.4:17506982-17507001 | MS.gene033017:intron | 25.0% |
!!! | TGCCGTTTTTTCTTTTTTTT+TGG | + | chr8.4:17507351-17507370 | MS.gene033017:intron | 25.0% |
AAATCTGCTATGCAATCATT+TGG | + | chr8.4:17508448-17508467 | MS.gene033017:intron | 30.0% | |
AACATTAGATTGCTCACAAA+GGG | + | chr8.4:17507587-17507606 | MS.gene033017:intron | 30.0% | |
ACAATTTGTGTTATGAATGC+TGG | - | chr8.4:17508101-17508120 | None:intergenic | 30.0% | |
ATCACTAAAACACAACAAGT+TGG | - | chr8.4:17508585-17508604 | None:intergenic | 30.0% | |
ATGGTAAAAAGACAGCAAAA+AGG | - | chr8.4:17507321-17507340 | None:intergenic | 30.0% | |
GAGAAGAAGGCAAAAAAATA+AGG | - | chr8.4:17507737-17507756 | None:intergenic | 30.0% | |
GATTCATAACATACCATTCT+TGG | - | chr8.4:17507269-17507288 | None:intergenic | 30.0% | |
GGAGAATTCTTCAAAATAAG+TGG | + | chr8.4:17507136-17507155 | MS.gene033017:intron | 30.0% | |
TAACATTAGATTGCTCACAA+AGG | + | chr8.4:17507586-17507605 | MS.gene033017:intron | 30.0% | |
TATGACATCAAATTAACCTC+AGG | - | chr8.4:17508002-17508021 | None:intergenic | 30.0% | |
TCTATGAGCTGAATTATAGA+TGG | - | chr8.4:17508258-17508277 | None:intergenic | 30.0% | |
TTCATAACATACCATTCTTG+GGG | - | chr8.4:17507267-17507286 | None:intergenic | 30.0% | |
! | ATAACACAAATTGTGTTGAC+AGG | + | chr8.4:17508107-17508126 | MS.gene033017:intron | 30.0% |
! | GAATGTATGCTTTTCTATAC+TGG | + | chr8.4:17508158-17508177 | MS.gene033017:intron | 30.0% |
! | GCTTGAATGTTTTGTCAATT+TGG | + | chr8.4:17507425-17507444 | MS.gene033017:intron | 30.0% |
! | TACATTTTGTGAGTGTGTTT+TGG | - | chr8.4:17507206-17507225 | None:intergenic | 30.0% |
AAAACGGCAGCAAATTTGTA+TGG | - | chr8.4:17507340-17507359 | None:intergenic | 35.0% | |
ACATGAGTGATGACATCAAT+AGG | - | chr8.4:17507795-17507814 | None:intergenic | 35.0% | |
AGCACTCAAGTTACAAAACA+AGG | - | chr8.4:17508068-17508087 | None:intergenic | 35.0% | |
CACAGTTTATCGAGAAAGAA+AGG | + | chr8.4:17508307-17508326 | MS.gene033017:intron | 35.0% | |
CTTGACAAAATGGTTACTCA+AGG | + | chr8.4:17507659-17507678 | MS.gene033017:intron | 35.0% | |
GAAAACAAGTGCATAAAGAG+AGG | + | chr8.4:17507508-17507527 | MS.gene033017:CDS | 35.0% | |
TAAAGAGAGATTAGGGAAAC+AGG | - | chr8.4:17507936-17507955 | None:intergenic | 35.0% | |
TCCTTATCCTCGCATAAAAT+CGG | - | chr8.4:17507819-17507838 | None:intergenic | 35.0% | |
TGAAATAAGCCAATCCAAAC+AGG | + | chr8.4:17507241-17507260 | MS.gene033017:intron | 35.0% | |
TTTCTTACACATATAGCCTG+AGG | + | chr8.4:17507983-17508002 | MS.gene033017:intron | 35.0% | |
! | AACAAGCTTGAGTGTTTTCT+TGG | - | chr8.4:17506756-17506775 | None:intergenic | 35.0% |
! | AGGAGGTGGTTAAAAGTATA+AGG | + | chr8.4:17507536-17507555 | MS.gene033017:CDS | 35.0% |
! | CTTGAGTAACCATTTTGTCA+AGG | - | chr8.4:17507661-17507680 | None:intergenic | 35.0% |
!! | ACACTCAAGCTTGTTAAAAG+AGG | + | chr8.4:17506761-17506780 | MS.gene033017:CDS | 35.0% |
AAAGGGTGAACTATCTCAAG+AGG | + | chr8.4:17508617-17508636 | MS.gene033017:CDS | 40.0% | |
AACTTTGCGCTGAATCTTGA+TGG | + | chr8.4:17507880-17507899 | MS.gene033017:intron | 40.0% | |
AAGGTGCAACATCATCAATG+AGG | - | chr8.4:17508049-17508068 | None:intergenic | 40.0% | |
AGTATAAGGCGAGGTCAAAA+AGG | + | chr8.4:17507550-17507569 | MS.gene033017:CDS | 40.0% | |
ATCAAGATTCAGCGCAAAGT+TGG | - | chr8.4:17507881-17507900 | None:intergenic | 40.0% | |
CATAAAGAGAGGAGTTAAGG+AGG | + | chr8.4:17507519-17507538 | MS.gene033017:CDS | 40.0% | |
GCAGAGTGTGTATTATAGCT+GGG | + | chr8.4:17507760-17507779 | MS.gene033017:intron | 40.0% | |
GCTTATTTCAGCTGATCTAC+TGG | - | chr8.4:17507231-17507250 | None:intergenic | 40.0% | |
GTATAAGGCGAGGTCAAAAA+GGG | + | chr8.4:17507551-17507570 | MS.gene033017:CDS | 40.0% | |
GTGCATAAAGAGAGGAGTTA+AGG | + | chr8.4:17507516-17507535 | MS.gene033017:CDS | 40.0% | |
GTGTTATGAATGCTGGCATA+AGG | - | chr8.4:17508094-17508113 | None:intergenic | 40.0% | |
TATGGAATTAAGGGCCTGTT+TGG | + | chr8.4:17506991-17507010 | MS.gene033017:intron | 40.0% | |
TGAGATAGTTCACCCTTTGA+AGG | - | chr8.4:17508615-17508634 | None:intergenic | 40.0% | |
TGCAGAGTGTGTATTATAGC+TGG | + | chr8.4:17507759-17507778 | MS.gene033017:intron | 40.0% | |
! | CTAAGCATTGCAGTGTTTCT+GGG | + | chr8.4:17506847-17506866 | MS.gene033017:intron | 40.0% |
! | GTGGTTAAAAGTATAAGGCG+AGG | + | chr8.4:17507541-17507560 | MS.gene033017:CDS | 40.0% |
! | TCATGTTCCGATTTTATGCG+AGG | + | chr8.4:17507809-17507828 | MS.gene033017:CDS | 40.0% |
! | TCCGATTTTATGCGAGGATA+AGG | + | chr8.4:17507815-17507834 | MS.gene033017:CDS | 40.0% |
! | TCTAAGCATTGCAGTGTTTC+TGG | + | chr8.4:17506846-17506865 | MS.gene033017:intron | 40.0% |
!!! | TTGCAGTGTTTCTGGGTTTT+TGG | + | chr8.4:17506854-17506873 | MS.gene033017:intron | 40.0% |
AAAGAGAGGAGTTAAGGAGG+TGG | + | chr8.4:17507522-17507541 | MS.gene033017:CDS | 45.0% | |
AGAGAGATTAGGGAAACAGG+CGG | - | chr8.4:17507933-17507952 | None:intergenic | 45.0% | |
AGTGATGACCAAGCCTTCAA+AGG | + | chr8.4:17508599-17508618 | MS.gene033017:CDS | 45.0% | |
ATTTGTCCAGGACCTTGCAA+CGG | + | chr8.4:17508542-17508561 | MS.gene033017:intron | 45.0% | |
CACACTCTGCATTGAGAAGA+AGG | - | chr8.4:17507750-17507769 | None:intergenic | 45.0% | |
CGACAGTGAAGGTGAGAAAT+CGG | + | chr8.4:17506655-17506674 | MS.gene033017:CDS | 45.0% | |
GAAAGCTTCTTTCCAGCAAG+AGG | - | chr8.4:17506734-17506753 | None:intergenic | 45.0% | |
GTGATGACCAAGCCTTCAAA+GGG | + | chr8.4:17508600-17508619 | MS.gene033017:CDS | 45.0% | |
! | AGCAAGAGGTTTTGCAATGG+GGG | - | chr8.4:17506720-17506739 | None:intergenic | 45.0% |
! | CAGCAAGAGGTTTTGCAATG+GGG | - | chr8.4:17506721-17506740 | None:intergenic | 45.0% |
! | CCAGCAAGAGGTTTTGCAAT+GGG | - | chr8.4:17506722-17506741 | None:intergenic | 45.0% |
! | TAGTTCACCCTTTGAAGGCT+TGG | - | chr8.4:17508610-17508629 | None:intergenic | 45.0% |
! | TCCAGCAAGAGGTTTTGCAA+TGG | - | chr8.4:17506723-17506742 | None:intergenic | 45.0% |
AAGGTGAGAAATCGGTGCAG+AGG | + | chr8.4:17506663-17506682 | MS.gene033017:CDS | 50.0% | |
AGGTGAGAAATCGGTGCAGA+GGG | + | chr8.4:17506664-17506683 | MS.gene033017:CDS | 50.0% | |
ATCCAAACAGGCCCCAAGAA+TGG | + | chr8.4:17507253-17507272 | MS.gene033017:intron | 50.0% | |
CCCATTGCAAAACCTCTTGC+TGG | + | chr8.4:17506719-17506738 | MS.gene033017:CDS | 50.0% | |
GAAGGAGAGGAAGAAGATGC+AGG | + | chr8.4:17506688-17506707 | MS.gene033017:CDS | 50.0% | |
TACCATTCTTGGGGCCTGTT+TGG | - | chr8.4:17507258-17507277 | None:intergenic | 50.0% | |
TTCTTGGGGCCTGTTTGGAT+TGG | - | chr8.4:17507253-17507272 | None:intergenic | 50.0% | |
GAAATCGGTGCAGAGGGAGA+AGG | + | chr8.4:17506670-17506689 | MS.gene033017:CDS | 55.0% | |
CAACGGCAGGAGCAACGAAG+AGG | + | chr8.4:17508559-17508578 | MS.gene033017:CDS | 60.0% | |
TCGTTGCTCCTGCCGTTGCA+AGG | - | chr8.4:17508557-17508576 | None:intergenic | 60.0% | |
CGGTGCAGAGGGAGAAGGAG+AGG | + | chr8.4:17506675-17506694 | MS.gene033017:CDS | 65.0% | |
CTCCTGCCGTTGCAAGGTCC+TGG | - | chr8.4:17508551-17508570 | None:intergenic | 65.0% | |
GTCCAGGACCTTGCAACGGC+AGG | + | chr8.4:17508546-17508565 | MS.gene033017:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.4 | gene | 17506647 | 17508713 | 17506647 | ID=MS.gene033017 |
chr8.4 | mRNA | 17506647 | 17508713 | 17506647 | ID=MS.gene033017.t1;Parent=MS.gene033017 |
chr8.4 | exon | 17506647 | 17506782 | 17506647 | ID=MS.gene033017.t1.exon1;Parent=MS.gene033017.t1 |
chr8.4 | CDS | 17506647 | 17506782 | 17506647 | ID=cds.MS.gene033017.t1;Parent=MS.gene033017.t1 |
chr8.4 | exon | 17507503 | 17507572 | 17507503 | ID=MS.gene033017.t1.exon2;Parent=MS.gene033017.t1 |
chr8.4 | CDS | 17507503 | 17507572 | 17507503 | ID=cds.MS.gene033017.t1;Parent=MS.gene033017.t1 |
chr8.4 | exon | 17507764 | 17507869 | 17507764 | ID=MS.gene033017.t1.exon3;Parent=MS.gene033017.t1 |
chr8.4 | CDS | 17507764 | 17507869 | 17507764 | ID=cds.MS.gene033017.t1;Parent=MS.gene033017.t1 |
chr8.4 | exon | 17508552 | 17508713 | 17508552 | ID=MS.gene033017.t1.exon4;Parent=MS.gene033017.t1 |
chr8.4 | CDS | 17508552 | 17508713 | 17508552 | ID=cds.MS.gene033017.t1;Parent=MS.gene033017.t1 |
Gene Sequence |
Protein sequence |