Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene90957.t1 | XP_013456513.1 | 98.9 | 449 | 5 | 0 | 1 | 449 | 1 | 449 | 2.20E-243 | 851.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene90957.t1 | Q9LD90 | 86.4 | 413 | 53 | 2 | 33 | 445 | 26 | 435 | 2.7e-210 | 733.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene90957.t1 | A0A072ULA4 | 98.9 | 449 | 5 | 0 | 1 | 449 | 1 | 449 | 1.6e-243 | 851.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene90957.t1 | MTR_4g074160 | 98.042 | 613 | 11 | 1 | 1 | 613 | 1 | 612 | 0.0 | 1215 |
MS.gene90957.t1 | MTR_6g004400 | 30.348 | 201 | 106 | 5 | 80 | 246 | 346 | 546 | 4.80e-23 | 103 |
MS.gene90957.t1 | MTR_6g004400 | 40.244 | 82 | 49 | 0 | 80 | 161 | 346 | 427 | 8.90e-12 | 67.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene90957.t1 | AT3G57150 | 80.171 | 469 | 77 | 6 | 9 | 475 | 6 | 460 | 0.0 | 736 |
MS.gene90957.t1 | AT5G14460 | 31.771 | 192 | 97 | 5 | 89 | 246 | 323 | 514 | 2.15e-23 | 104 |
Find 158 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GAGGGTTAGGTCTGGGATTA+TGG | 0.176925 | 4.2:-34563215 | MS.gene90957:CDS |
AGCCGCTTCATCTACTTTCT+TGG | 0.219661 | 4.2:+34562490 | None:intergenic |
GTTCATTTGGGTTTAGTTCT+TGG | 0.230459 | 4.2:-34563265 | MS.gene90957:CDS |
AGAAACATTTAGTTGTGTTT+TGG | 0.271760 | 4.2:-34563327 | MS.gene90957:CDS |
TGGTGCTAAGTTGATGATTC+CGG | 0.283073 | 4.2:-34563020 | MS.gene90957:CDS |
GATCTCTGCAGCATTATCTT+TGG | 0.294718 | 4.2:+34562214 | None:intergenic |
GCTGGTATGGCGGCTGCTAC+TGG | 0.295017 | 4.2:-34562674 | MS.gene90957:CDS |
TAGGACTATGTGTGTTCATT+TGG | 0.300884 | 4.2:-34563278 | MS.gene90957:CDS |
TTCTGGTTCTGTATCTTTGT+TGG | 0.332866 | 4.2:+34563894 | None:intergenic |
ATGTCTTCACCTATTCTTCT+TGG | 0.341008 | 4.2:+34562120 | None:intergenic |
GAGGAGGGTTGTTATGCCTT+TGG | 0.341470 | 4.2:-34563107 | MS.gene90957:CDS |
ACTCTTGATCCTAAGGTTAC+TGG | 0.345085 | 4.2:-34563589 | MS.gene90957:CDS |
ACCATCAACTTCAGCAACTT+TGG | 0.346981 | 4.2:+34562529 | None:intergenic |
GGAAATGGGGTTTGGGTCCT+AGG | 0.348440 | 4.2:-34562820 | MS.gene90957:CDS |
CGTGCTCTTGAAACTTTAAC+TGG | 0.360375 | 4.2:-34563445 | MS.gene90957:CDS |
TATGGGTGAGAAGGATAATA+TGG | 0.361091 | 4.2:-34563197 | MS.gene90957:CDS |
GGTGCTAAGTTGATGATTCC+GGG | 0.361757 | 4.2:-34563019 | MS.gene90957:CDS |
CAGTTTGAGGTGTCGATTGT+AGG | 0.363827 | 4.2:+34563823 | None:intergenic |
TTTGACTAGTTATAAGAGAT+TGG | 0.369510 | 4.2:-34563077 | MS.gene90957:CDS |
GGGATACTTATCCGAGGAAA+TGG | 0.370351 | 4.2:-34562835 | MS.gene90957:CDS |
GTTTGATCATGAAATCTTGC+TGG | 0.372543 | 4.2:+34563860 | None:intergenic |
TGTCTTCACCTATTCTTCTT+GGG | 0.379511 | 4.2:+34562121 | None:intergenic |
ATTGCTGATTATCTGAAATA+TGG | 0.384973 | 4.2:-34563709 | MS.gene90957:CDS |
AGGACTATGTGTGTTCATTT+GGG | 0.389668 | 4.2:-34563277 | MS.gene90957:CDS |
GGTGGGGACGCCGTGATTGC+TGG | 0.392518 | 4.2:-34562692 | MS.gene90957:CDS |
CAAAGATGCCCAAGAAGAAT+AGG | 0.398166 | 4.2:-34562129 | None:intergenic |
GGTTACTATGCATGATGTTA+TGG | 0.406717 | 4.2:-34563176 | MS.gene90957:CDS |
TTCTCAGACTTGTCCACCTC+AGG | 0.408947 | 4.2:+34562263 | None:intergenic |
TTATCCGAGGAAATGGGGTT+TGG | 0.409185 | 4.2:-34562828 | MS.gene90957:CDS |
CAACAAAATGGGCCAGTTTG+AGG | 0.417673 | 4.2:+34563810 | None:intergenic |
CTGGTATGGCGGCTGCTACT+GGG | 0.423425 | 4.2:-34562673 | MS.gene90957:CDS |
TAAGATCAAGAGGGTGGTTA+TGG | 0.424039 | 4.2:-34562861 | MS.gene90957:CDS |
TTGGACTTCTTAGCAGGAGC+AGG | 0.428365 | 4.2:+34562548 | None:intergenic |
AGGGTTAGGTCTGGGATTAT+GGG | 0.428508 | 4.2:-34563214 | MS.gene90957:CDS |
TGATGATTCCGGGTTTGCTT+AGG | 0.429928 | 4.2:-34563009 | MS.gene90957:CDS |
GCTGATTGCTGCAGGGAAGC+TGG | 0.431749 | 4.2:-34562780 | MS.gene90957:CDS |
TCAAGAGGGTGGTTATGGAT+AGG | 0.433226 | 4.2:-34562856 | MS.gene90957:CDS |
GGATACTTATCCGAGGAAAT+GGG | 0.435995 | 4.2:-34562834 | MS.gene90957:CDS |
AAGAAGAAGGATAAAGAGAA+TGG | 0.436116 | 4.2:-34562428 | MS.gene90957:CDS |
GCTGTGAATGCTATTTGTTA+TGG | 0.437584 | 4.2:-34563040 | MS.gene90957:CDS |
TGAGATGACTACTGCTGTTA+TGG | 0.438520 | 4.2:-34562909 | MS.gene90957:CDS |
TATCCGAGGAAATGGGGTTT+GGG | 0.438978 | 4.2:-34562827 | MS.gene90957:CDS |
TCTTGAGGAGTACTTTCATT+CGG | 0.440773 | 4.2:+34562743 | None:intergenic |
AGGTGAGTGACCAGCTGGAA+GGG | 0.444423 | 4.2:+34563744 | None:intergenic |
AGAGGGTGAGAAGGTTAAGA+AGG | 0.448672 | 4.2:-34562618 | MS.gene90957:CDS |
TTATAAGAGATTGGTCGTTA+AGG | 0.450138 | 4.2:-34563068 | MS.gene90957:CDS |
AGCTTAGGAGGGTTAGGTCT+GGG | 0.450353 | 4.2:-34563222 | MS.gene90957:CDS |
CAAGAGGGTGGTTATGGATA+GGG | 0.456296 | 4.2:-34562855 | MS.gene90957:CDS |
TCTTGCCTTCAGAGAGAGAT+GGG | 0.460200 | 4.2:+34563932 | None:intergenic |
GTGAGGCCGGTACTTATGTT+AGG | 0.460583 | 4.2:-34563297 | MS.gene90957:CDS |
GCAACTTTGGACTTCTTAGC+AGG | 0.461403 | 4.2:+34562542 | None:intergenic |
AAGAAGAAGCTGATTGCTGC+AGG | 0.463700 | 4.2:-34562788 | MS.gene90957:CDS |
GGACGCCGTGATTGCTGGTA+TGG | 0.464126 | 4.2:-34562687 | MS.gene90957:CDS |
CTCTTGATCCTAAGGTTACT+GGG | 0.467083 | 4.2:-34563588 | MS.gene90957:CDS |
CTACAATCGACACCTCAAAC+TGG | 0.467674 | 4.2:-34563822 | MS.gene90957:CDS |
TTGGGTTTAGTTCTTGGTGT+TGG | 0.469171 | 4.2:-34563259 | MS.gene90957:CDS |
GTTCTCATGAGGTTGTTGCT+TGG | 0.470108 | 4.2:-34563654 | MS.gene90957:CDS |
TTCTTGCCTTCAGAGAGAGA+TGG | 0.474253 | 4.2:+34563931 | None:intergenic |
TGCTGTTCCTGATGTTGCTA+AGG | 0.476360 | 4.2:-34563473 | MS.gene90957:CDS |
TCCAAAGTTGCTGAAGTTGA+TGG | 0.479321 | 4.2:-34562530 | MS.gene90957:CDS |
GAGGGTTGTTATGCCTTTGG+AGG | 0.479919 | 4.2:-34563104 | MS.gene90957:CDS |
GGTTTAGTTCTTGGTGTTGG+TGG | 0.480018 | 4.2:-34563256 | MS.gene90957:CDS |
GCAACAACCTCATGAGAACT+AGG | 0.480488 | 4.2:+34563658 | None:intergenic |
TGCAAGAGCTTAGGAGGGTT+AGG | 0.482197 | 4.2:-34563228 | MS.gene90957:CDS |
CAGTGGTACTCTTGATCCTA+AGG | 0.482757 | 4.2:-34563596 | MS.gene90957:CDS |
GTCTGGGATTATGGGTGAGA+AGG | 0.485087 | 4.2:-34563206 | MS.gene90957:CDS |
TGCTCAGTATGTTTATGATA+AGG | 0.488747 | 4.2:-34563152 | MS.gene90957:CDS |
GAGCTTAGGAGGGTTAGGTC+TGG | 0.490050 | 4.2:-34563223 | MS.gene90957:CDS |
TGATGAGGAGAAGGTTGAAA+AGG | 0.490781 | 4.2:-34562390 | MS.gene90957:CDS |
AAGAGTATGTTTGTATTGCT+AGG | 0.493913 | 4.2:-34563504 | MS.gene90957:CDS |
GAGAAGGTTAAGAAGGATGA+TGG | 0.494500 | 4.2:-34562611 | MS.gene90957:CDS |
TCATGAGAACTAGGGTTAGC+AGG | 0.495387 | 4.2:+34563667 | None:intergenic |
AGAAGGTTAAGAAGGATGAT+GGG | 0.497001 | 4.2:-34562610 | MS.gene90957:CDS |
GTGAAATCTCAACAAGGTGC+TGG | 0.499500 | 4.2:-34563529 | MS.gene90957:CDS |
GGTGAGTGACCAGCTGGAAG+GGG | 0.501707 | 4.2:+34563745 | None:intergenic |
CACAAGGAAAAGGGTGAAGA+TGG | 0.502250 | 4.2:-34562353 | MS.gene90957:CDS |
ATCAAATTCCCAGTAACCTT+AGG | 0.503949 | 4.2:+34563580 | None:intergenic |
CGAGCTACCTTAGCAACATC+AGG | 0.506820 | 4.2:+34563466 | None:intergenic |
GTCATATGCAAGAGCTTAGG+AGG | 0.508607 | 4.2:-34563234 | MS.gene90957:CDS |
TATTCTTCGTGTCGAGAAGA+CGG | 0.508925 | 4.2:-34563623 | MS.gene90957:CDS |
GAAAGTAGATGAAGCGGCTG+TGG | 0.509335 | 4.2:-34562486 | MS.gene90957:CDS |
GAAATGGGGTTTGGGTCCTA+GGG | 0.510777 | 4.2:-34562819 | MS.gene90957:CDS |
AAAGAGGTTGCTGATGAAGA+GGG | 0.510792 | 4.2:-34562635 | MS.gene90957:CDS |
TGCTGATGAAGAGGGTGAGA+AGG | 0.511607 | 4.2:-34562627 | MS.gene90957:CDS |
TTGAGAGGTGAGTGACCAGC+TGG | 0.515974 | 4.2:+34563739 | None:intergenic |
ATTCTTCGTGTCGAGAAGAC+GGG | 0.516109 | 4.2:-34563622 | MS.gene90957:CDS |
GTTATGGCTACTTGTGATCA+TGG | 0.518206 | 4.2:-34562893 | MS.gene90957:CDS |
AGAGCGATGAGACTTATTTG+AGG | 0.518362 | 4.2:-34563126 | MS.gene90957:CDS |
GTGGTCATATGCAAGAGCTT+AGG | 0.520527 | 4.2:-34563237 | MS.gene90957:CDS |
AGAGAGAGATGGGGACATGA+TGG | 0.524072 | 4.2:+34563942 | None:intergenic |
GTACTCCTCAAGAGTGGATG+AGG | 0.525760 | 4.2:-34562733 | MS.gene90957:CDS |
CGATGAGACTTATTTGAGGA+GGG | 0.530709 | 4.2:-34563122 | MS.gene90957:CDS |
GACCGCCTCAATGTCCGTAC+TGG | 0.533848 | 4.2:-34563778 | MS.gene90957:CDS |
TATTTCAGATAATCAGCAAT+GGG | 0.541396 | 4.2:+34563712 | None:intergenic |
TGAAGTCGGTTCGCCTGAGG+TGG | 0.545768 | 4.2:-34562276 | MS.gene90957:CDS |
TGCATCTTCTGATGAGGAGA+AGG | 0.555918 | 4.2:-34562399 | MS.gene90957:CDS |
AGCCGCCATACCAGCAATCA+CGG | 0.555963 | 4.2:+34562682 | None:intergenic |
TTCTCAAACCTAAGCAAACC+CGG | 0.556341 | 4.2:+34563001 | None:intergenic |
GTGAGTGACCAGCTGGAAGG+GGG | 0.556834 | 4.2:+34563746 | None:intergenic |
TGAAGATGGTTCTCCTGAAG+TGG | 0.558835 | 4.2:-34562339 | MS.gene90957:CDS |
AAGGGTGAAGCTATTGCCCT+TGG | 0.558857 | 4.2:-34562938 | MS.gene90957:CDS |
TTAAGAAGGATGATGGGGAA+GGG | 0.559638 | 4.2:-34562604 | MS.gene90957:CDS |
GGACCCAAACCCCATTTCCT+CGG | 0.561902 | 4.2:+34562824 | None:intergenic |
GTTAAGAAGGATGATGGGGA+AGG | 0.562363 | 4.2:-34562605 | MS.gene90957:CDS |
GACCAAGAAAGTAGATGAAG+CGG | 0.563615 | 4.2:-34562492 | MS.gene90957:CDS |
CTGCTGTTAAGAGACAACTT+AGG | 0.565713 | 4.2:-34563393 | MS.gene90957:CDS |
ATGTCCCCATCTCTCTCTGA+AGG | 0.569959 | 4.2:-34563937 | MS.gene90957:CDS |
AGTAGATGAAGCGGCTGTGG+AGG | 0.570309 | 4.2:-34562483 | MS.gene90957:CDS |
TGGACTTCTTAGCAGGAGCA+GGG | 0.572350 | 4.2:+34562549 | None:intergenic |
GCAGGGAAGCTGGATAAGCA+TGG | 0.572801 | 4.2:-34562770 | MS.gene90957:CDS |
CGCCGTGATTGCTGGTATGG+CGG | 0.577954 | 4.2:-34562684 | MS.gene90957:CDS |
TTCTTCTTCATAGAAGCCCT+AGG | 0.578222 | 4.2:+34562803 | None:intergenic |
ATAAGCACAACCTCCTCACC+AGG | 0.579419 | 4.2:+34562968 | None:intergenic |
CACAAGGAAACGAGTGAAGT+CGG | 0.580195 | 4.2:-34562290 | MS.gene90957:CDS |
GCGATGAGACTTATTTGAGG+AGG | 0.584233 | 4.2:-34563123 | MS.gene90957:CDS |
AAGGGCAATAGCTTCACCCT+TGG | 0.584541 | 4.2:+34562940 | None:intergenic |
CAGGGAAGCTGGATAAGCAT+GGG | 0.585096 | 4.2:-34562769 | MS.gene90957:CDS |
TCAGCAATGGGTCGTTTGAG+AGG | 0.590490 | 4.2:+34563724 | None:intergenic |
GAAAGAGGTTGCTGATGAAG+AGG | 0.591372 | 4.2:-34562636 | MS.gene90957:CDS |
GAGGTGAGTGACCAGCTGGA+AGG | 0.595183 | 4.2:+34563743 | None:intergenic |
CATAGTCCTAACATAAGTAC+CGG | 0.600318 | 4.2:+34563291 | None:intergenic |
ACATTCCTCATCCACTCTTG+AGG | 0.608152 | 4.2:+34562728 | None:intergenic |
GAAGGTTAAGAAGGATGATG+GGG | 0.610370 | 4.2:-34562609 | MS.gene90957:CDS |
CTAGTCAAAAGAACCTCCAA+AGG | 0.615878 | 4.2:+34563091 | None:intergenic |
TATTGACAGAGCAACGAGGT+TGG | 0.616767 | 4.2:-34563551 | MS.gene90957:CDS |
TGAGTGACCAGCTGGAAGGG+GGG | 0.617538 | 4.2:+34563747 | None:intergenic |
GATACTTATCCGAGGAAATG+GGG | 0.621162 | 4.2:-34562833 | MS.gene90957:CDS |
AGTGACCAGTACGGACATTG+AGG | 0.623451 | 4.2:+34563773 | None:intergenic |
CTCTTAACAGCAGAAATCAA+AGG | 0.625059 | 4.2:+34563403 | None:intergenic |
ATATTTCAGATAATCAGCAA+TGG | 0.627850 | 4.2:+34563711 | None:intergenic |
TGCAGAGATCAGTAACGGAA+AGG | 0.627993 | 4.2:-34562201 | MS.gene90957:CDS |
ATGAAAGTACTCCTCAAGAG+TGG | 0.631391 | 4.2:-34562739 | MS.gene90957:CDS |
GTATTGTTGCTAAGATCAAG+AGG | 0.631960 | 4.2:-34562871 | MS.gene90957:CDS |
CAACAACCTCATGAGAACTA+GGG | 0.632219 | 4.2:+34563659 | None:intergenic |
GAGTGAAGTCGGTTCGCCTG+AGG | 0.633165 | 4.2:-34562279 | MS.gene90957:CDS |
TGCTAACCCTAGTTCTCATG+AGG | 0.636176 | 4.2:-34563665 | MS.gene90957:CDS |
AATGCTGCAGAGATCAGTAA+CGG | 0.637087 | 4.2:-34562206 | MS.gene90957:CDS |
TAGTCATCTCAGCAATACCA+AGG | 0.640655 | 4.2:+34562921 | None:intergenic |
AGCTGCTGCATCTTCTGATG+AGG | 0.641491 | 4.2:-34562405 | MS.gene90957:CDS |
GACTGAAGATGTGAAGAAAG+AGG | 0.647185 | 4.2:-34562651 | MS.gene90957:CDS |
TTTGAGAATGATATTGAACC+TGG | 0.653930 | 4.2:-34562986 | MS.gene90957:CDS |
TTAACAGCAGAAATCAAAGG+TGG | 0.656440 | 4.2:+34563406 | None:intergenic |
AGAAGAAGCTGATTGCTGCA+GGG | 0.658320 | 4.2:-34562787 | MS.gene90957:CDS |
GGTTGTGCTTATGACTACCA+AGG | 0.659102 | 4.2:-34562957 | MS.gene90957:CDS |
TGTTGCTAAGATCAAGAGGG+TGG | 0.661471 | 4.2:-34562867 | MS.gene90957:CDS |
CTTGCCTTCAGAGAGAGATG+GGG | 0.670821 | 4.2:+34563933 | None:intergenic |
GAATGATATTGAACCTGGTG+AGG | 0.674019 | 4.2:-34562981 | MS.gene90957:CDS |
ATCACGGCGTCCCCACCAGT+AGG | 0.679551 | 4.2:+34562698 | None:intergenic |
AGTCATCTCAGCAATACCAA+GGG | 0.685774 | 4.2:+34562922 | None:intergenic |
TGATATTGAACCTGGTGAGG+AGG | 0.686276 | 4.2:-34562978 | MS.gene90957:CDS |
GTTGTGCTTATGACTACCAA+GGG | 0.691718 | 4.2:-34562956 | MS.gene90957:CDS |
GACCAGTACGGACATTGAGG+CGG | 0.696590 | 4.2:+34563776 | None:intergenic |
TATTGTTGCTAAGATCAAGA+GGG | 0.700862 | 4.2:-34562870 | MS.gene90957:CDS |
TGGATAGGGATACTTATCCG+AGG | 0.711704 | 4.2:-34562841 | MS.gene90957:CDS |
TCATATGCAAGAGCTTAGGA+GGG | 0.728673 | 4.2:-34563233 | MS.gene90957:CDS |
AGGTTGGTGAAATCTCAACA+AGG | 0.729026 | 4.2:-34563535 | MS.gene90957:CDS |
GTCGAGAAGACGGGTCACAG+TGG | 0.744339 | 4.2:-34563613 | MS.gene90957:CDS |
TTTGTATTGACAGAGCAACG+AGG | 0.787641 | 4.2:-34563555 | MS.gene90957:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
! | AAAGAAGAAGAAAAAGAAGA+AGG | - | chr4.2:34563638-34563657 | MS.gene90957:CDS | 25.0% |
! | ATATTTCAGATAATCAGCAA+TGG | + | chr4.2:34562371-34562390 | None:intergenic | 25.0% |
! | TATTTCAGATAATCAGCAAT+GGG | + | chr4.2:34562370-34562389 | None:intergenic | 25.0% |
!! | AGAAACATTTAGTTGTGTTT+TGG | - | chr4.2:34562752-34562771 | MS.gene90957:CDS | 25.0% |
!! | ATTGCTGATTATCTGAAATA+TGG | - | chr4.2:34562370-34562389 | MS.gene90957:CDS | 25.0% |
!! | TTTGACTAGTTATAAGAGAT+TGG | - | chr4.2:34563002-34563021 | MS.gene90957:CDS | 25.0% |
!!! | TCGTAGTTTTTCAACAAAAT+GGG | + | chr4.2:34562283-34562302 | None:intergenic | 25.0% |
AAGAAGAAGGATAAAGAGAA+TGG | - | chr4.2:34563651-34563670 | MS.gene90957:CDS | 30.0% | |
TATTGTTGCTAAGATCAAGA+GGG | - | chr4.2:34563209-34563228 | MS.gene90957:CDS | 30.0% | |
TGCTCAGTATGTTTATGATA+AGG | - | chr4.2:34562927-34562946 | MS.gene90957:CDS | 30.0% | |
TTTGAGAATGATATTGAACC+TGG | - | chr4.2:34563093-34563112 | MS.gene90957:CDS | 30.0% | |
! | AAAAAGAAGCACAAGGAAAA+GGG | - | chr4.2:34563717-34563736 | MS.gene90957:CDS | 30.0% |
! | AAGAGTATGTTTGTATTGCT+AGG | - | chr4.2:34562575-34562594 | MS.gene90957:CDS | 30.0% |
! | ATTGTAGGTGTAAGTTTTTC+AGG | + | chr4.2:34562244-34562263 | None:intergenic | 30.0% |
! | TTATAAGAGATTGGTCGTTA+AGG | - | chr4.2:34563011-34563030 | MS.gene90957:CDS | 30.0% |
!! | GTCGTAGTTTTTCAACAAAA+TGG | + | chr4.2:34562284-34562303 | None:intergenic | 30.0% |
AGAAGGTTAAGAAGGATGAT+GGG | - | chr4.2:34563469-34563488 | MS.gene90957:CDS | 35.0% | |
AGGACTATGTGTGTTCATTT+GGG | - | chr4.2:34562802-34562821 | MS.gene90957:CDS | 35.0% | |
ATCAAATTCCCAGTAACCTT+AGG | + | chr4.2:34562502-34562521 | None:intergenic | 35.0% | |
CATAGTCCTAACATAAGTAC+CGG | + | chr4.2:34562791-34562810 | None:intergenic | 35.0% | |
CTCTTAACAGCAGAAATCAA+AGG | + | chr4.2:34562679-34562698 | None:intergenic | 35.0% | |
GGTTACTATGCATGATGTTA+TGG | - | chr4.2:34562903-34562922 | MS.gene90957:CDS | 35.0% | |
GTATTGTTGCTAAGATCAAG+AGG | - | chr4.2:34563208-34563227 | MS.gene90957:CDS | 35.0% | |
GTTTGATCATGAAATCTTGC+TGG | + | chr4.2:34562222-34562241 | None:intergenic | 35.0% | |
TAGGACTATGTGTGTTCATT+TGG | - | chr4.2:34562801-34562820 | MS.gene90957:CDS | 35.0% | |
TATGGGTGAGAAGGATAATA+TGG | - | chr4.2:34562882-34562901 | MS.gene90957:CDS | 35.0% | |
TTAACAGCAGAAATCAAAGG+TGG | + | chr4.2:34562676-34562695 | None:intergenic | 35.0% | |
! | GAAAAAGAAGCACAAGGAAA+AGG | - | chr4.2:34563716-34563735 | MS.gene90957:CDS | 35.0% |
! | GAAGAAGAAAAAGAAGCACA+AGG | - | chr4.2:34563773-34563792 | MS.gene90957:CDS | 35.0% |
! | GCTGTGAATGCTATTTGTTA+TGG | - | chr4.2:34563039-34563058 | MS.gene90957:CDS | 35.0% |
!! | GTTCATTTGGGTTTAGTTCT+TGG | - | chr4.2:34562814-34562833 | MS.gene90957:CDS | 35.0% |
!! | TCTTGAGGAGTACTTTCATT+CGG | + | chr4.2:34563339-34563358 | None:intergenic | 35.0% |
!! | TTCTGGTTCTGTATCTTTGT+TGG | + | chr4.2:34562188-34562207 | None:intergenic | 35.0% |
!!! | AATGTTGTTTTACCTACTGG+TGG | - | chr4.2:34563369-34563388 | MS.gene90957:CDS | 35.0% |
!!! | AGGAATGTTGTTTTACCTAC+TGG | - | chr4.2:34563366-34563385 | MS.gene90957:CDS | 35.0% |
!!! | ATGAAATCTTGCTGGTTTTG+TGG | + | chr4.2:34562214-34562233 | None:intergenic | 35.0% |
!!! | ATGTTGTTTTACCTACTGGT+GGG | - | chr4.2:34563370-34563389 | MS.gene90957:CDS | 35.0% |
AAAGAGGTTGCTGATGAAGA+GGG | - | chr4.2:34563444-34563463 | MS.gene90957:CDS | 40.0% | |
AATGCTGCAGAGATCAGTAA+CGG | - | chr4.2:34563873-34563892 | MS.gene90957:CDS | 40.0% | |
ACCATCAACTTCAGCAACTT+TGG | + | chr4.2:34563553-34563572 | None:intergenic | 40.0% | |
ACTCTTGATCCTAAGGTTAC+TGG | - | chr4.2:34562490-34562509 | MS.gene90957:CDS | 40.0% | |
AGAGCGATGAGACTTATTTG+AGG | - | chr4.2:34562953-34562972 | MS.gene90957:CDS | 40.0% | |
AGTCATCTCAGCAATACCAA+GGG | + | chr4.2:34563160-34563179 | None:intergenic | 40.0% | |
CAACAACCTCATGAGAACTA+GGG | + | chr4.2:34562423-34562442 | None:intergenic | 40.0% | |
CGATGAGACTTATTTGAGGA+GGG | - | chr4.2:34562957-34562976 | MS.gene90957:CDS | 40.0% | |
CGTGCTCTTGAAACTTTAAC+TGG | - | chr4.2:34562634-34562653 | MS.gene90957:CDS | 40.0% | |
CTAGTCAAAAGAACCTCCAA+AGG | + | chr4.2:34562991-34563010 | None:intergenic | 40.0% | |
CTCTTGATCCTAAGGTTACT+GGG | - | chr4.2:34562491-34562510 | MS.gene90957:CDS | 40.0% | |
CTGCTGTTAAGAGACAACTT+AGG | - | chr4.2:34562686-34562705 | MS.gene90957:CDS | 40.0% | |
GAAGGTTAAGAAGGATGATG+GGG | - | chr4.2:34563470-34563489 | MS.gene90957:CDS | 40.0% | |
GAATGATATTGAACCTGGTG+AGG | - | chr4.2:34563098-34563117 | MS.gene90957:CDS | 40.0% | |
GACCAAGAAAGTAGATGAAG+CGG | - | chr4.2:34563587-34563606 | MS.gene90957:CDS | 40.0% | |
GACTGAAGATGTGAAGAAAG+AGG | - | chr4.2:34563428-34563447 | MS.gene90957:CDS | 40.0% | |
GAGAAGGTTAAGAAGGATGA+TGG | - | chr4.2:34563468-34563487 | MS.gene90957:CDS | 40.0% | |
GATACTTATCCGAGGAAATG+GGG | - | chr4.2:34563246-34563265 | MS.gene90957:CDS | 40.0% | |
GATCTCTGCAGCATTATCTT+TGG | + | chr4.2:34563868-34563887 | None:intergenic | 40.0% | |
GGATACTTATCCGAGGAAAT+GGG | - | chr4.2:34563245-34563264 | MS.gene90957:CDS | 40.0% | |
GTTATGGCTACTTGTGATCA+TGG | - | chr4.2:34563186-34563205 | MS.gene90957:CDS | 40.0% | |
GTTGTGCTTATGACTACCAA+GGG | - | chr4.2:34563123-34563142 | MS.gene90957:CDS | 40.0% | |
TAAGATCAAGAGGGTGGTTA+TGG | - | chr4.2:34563218-34563237 | MS.gene90957:CDS | 40.0% | |
TAGTCATCTCAGCAATACCA+AGG | + | chr4.2:34563161-34563180 | None:intergenic | 40.0% | |
TATTCTTCGTGTCGAGAAGA+CGG | - | chr4.2:34562456-34562475 | MS.gene90957:CDS | 40.0% | |
TCATATGCAAGAGCTTAGGA+GGG | - | chr4.2:34562846-34562865 | MS.gene90957:CDS | 40.0% | |
TCCAAAGTTGCTGAAGTTGA+TGG | - | chr4.2:34563549-34563568 | MS.gene90957:CDS | 40.0% | |
TGAGATGACTACTGCTGTTA+TGG | - | chr4.2:34563170-34563189 | MS.gene90957:CDS | 40.0% | |
TGATGAGGAGAAGGTTGAAA+AGG | - | chr4.2:34563689-34563708 | MS.gene90957:CDS | 40.0% | |
TTCTCAAACCTAAGCAAACC+CGG | + | chr4.2:34563081-34563100 | None:intergenic | 40.0% | |
TTCTTCTTCATAGAAGCCCT+AGG | + | chr4.2:34563279-34563298 | None:intergenic | 40.0% | |
! | GGAGAAGAAAAAGAAGCACA+AGG | - | chr4.2:34563710-34563729 | MS.gene90957:CDS | 40.0% |
! | TTCTCAGACTTTTCCACTTC+AGG | + | chr4.2:34563756-34563775 | None:intergenic | 40.0% |
! | TTTGTATTGACAGAGCAACG+AGG | - | chr4.2:34562524-34562543 | MS.gene90957:CDS | 40.0% |
!! | AGGTTGGTGAAATCTCAACA+AGG | - | chr4.2:34562544-34562563 | MS.gene90957:CDS | 40.0% |
!! | ATGAAAGTACTCCTCAAGAG+TGG | - | chr4.2:34563340-34563359 | MS.gene90957:CDS | 40.0% |
!! | TGGTGCTAAGTTGATGATTC+CGG | - | chr4.2:34563059-34563078 | MS.gene90957:CDS | 40.0% |
!! | TGTGTTTTGGATTTCGTGTG+AGG | - | chr4.2:34562765-34562784 | MS.gene90957:CDS | 40.0% |
!! | TTAAGAAGGATGATGGGGAA+GGG | - | chr4.2:34563475-34563494 | MS.gene90957:CDS | 40.0% |
!! | TTGGGTTTAGTTCTTGGTGT+TGG | - | chr4.2:34562820-34562839 | MS.gene90957:CDS | 40.0% |
!!! | TGTTGTTTTACCTACTGGTG+GGG | - | chr4.2:34563371-34563390 | MS.gene90957:CDS | 40.0% |
AAGAAGAAGCTGATTGCTGC+AGG | - | chr4.2:34563291-34563310 | MS.gene90957:CDS | 45.0% | |
ACATTCCTCATCCACTCTTG+AGG | + | chr4.2:34563354-34563373 | None:intergenic | 45.0% | |
AGAAGAAGCTGATTGCTGCA+GGG | - | chr4.2:34563292-34563311 | MS.gene90957:CDS | 45.0% | |
AGAGGGTGAGAAGGTTAAGA+AGG | - | chr4.2:34563461-34563480 | MS.gene90957:CDS | 45.0% | |
AGCCGCTTCATCTACTTTCT+TGG | + | chr4.2:34563592-34563611 | None:intergenic | 45.0% | |
ATTCTTCGTGTCGAGAAGAC+GGG | - | chr4.2:34562457-34562476 | MS.gene90957:CDS | 45.0% | |
CAACAAAATGGGCCAGTTTG+AGG | + | chr4.2:34562272-34562291 | None:intergenic | 45.0% | |
CAAGAGGGTGGTTATGGATA+GGG | - | chr4.2:34563224-34563243 | MS.gene90957:CDS | 45.0% | |
CACAAGGAAAAGGGTGAAGA+TGG | - | chr4.2:34563726-34563745 | MS.gene90957:CDS | 45.0% | |
CACAAGGAAACGAGTGAAGT+CGG | - | chr4.2:34563789-34563808 | MS.gene90957:CDS | 45.0% | |
CAGTGGTACTCTTGATCCTA+AGG | - | chr4.2:34562483-34562502 | MS.gene90957:CDS | 45.0% | |
CTACAATCGACACCTCAAAC+TGG | - | chr4.2:34562257-34562276 | MS.gene90957:CDS | 45.0% | |
GAAAGAGGTTGCTGATGAAG+AGG | - | chr4.2:34563443-34563462 | MS.gene90957:CDS | 45.0% | |
GCAACAACCTCATGAGAACT+AGG | + | chr4.2:34562424-34562443 | None:intergenic | 45.0% | |
GCAACTTTGGACTTCTTAGC+AGG | + | chr4.2:34563540-34563559 | None:intergenic | 45.0% | |
GCGATGAGACTTATTTGAGG+AGG | - | chr4.2:34562956-34562975 | MS.gene90957:CDS | 45.0% | |
GGGATACTTATCCGAGGAAA+TGG | - | chr4.2:34563244-34563263 | MS.gene90957:CDS | 45.0% | |
GGTTGTGCTTATGACTACCA+AGG | - | chr4.2:34563122-34563141 | MS.gene90957:CDS | 45.0% | |
GTCATATGCAAGAGCTTAGG+AGG | - | chr4.2:34562845-34562864 | MS.gene90957:CDS | 45.0% | |
GTGAAATCTCAACAAGGTGC+TGG | - | chr4.2:34562550-34562569 | MS.gene90957:CDS | 45.0% | |
GTGGTCATATGCAAGAGCTT+AGG | - | chr4.2:34562842-34562861 | MS.gene90957:CDS | 45.0% | |
GTTCTCATGAGGTTGTTGCT+TGG | - | chr4.2:34562425-34562444 | MS.gene90957:CDS | 45.0% | |
TATCCGAGGAAATGGGGTTT+GGG | - | chr4.2:34563252-34563271 | MS.gene90957:CDS | 45.0% | |
TATTGACAGAGCAACGAGGT+TGG | - | chr4.2:34562528-34562547 | MS.gene90957:CDS | 45.0% | |
TCAAGAGGGTGGTTATGGAT+AGG | - | chr4.2:34563223-34563242 | MS.gene90957:CDS | 45.0% | |
TCTTGCCTTCAGAGAGAGAT+GGG | + | chr4.2:34562150-34562169 | None:intergenic | 45.0% | |
TGAAGATGGTTCTCCTGAAG+TGG | - | chr4.2:34563740-34563759 | MS.gene90957:CDS | 45.0% | |
TGATATTGAACCTGGTGAGG+AGG | - | chr4.2:34563101-34563120 | MS.gene90957:CDS | 45.0% | |
TGCATCTTCTGATGAGGAGA+AGG | - | chr4.2:34563680-34563699 | MS.gene90957:CDS | 45.0% | |
TGCTGTTCCTGATGTTGCTA+AGG | - | chr4.2:34562606-34562625 | MS.gene90957:CDS | 45.0% | |
TGGATAGGGATACTTATCCG+AGG | - | chr4.2:34563238-34563257 | MS.gene90957:CDS | 45.0% | |
TGTTGCTAAGATCAAGAGGG+TGG | - | chr4.2:34563212-34563231 | MS.gene90957:CDS | 45.0% | |
TTATCCGAGGAAATGGGGTT+TGG | - | chr4.2:34563251-34563270 | MS.gene90957:CDS | 45.0% | |
TTCTTGCCTTCAGAGAGAGA+TGG | + | chr4.2:34562151-34562170 | None:intergenic | 45.0% | |
! | AGGGTTAGGTCTGGGATTAT+GGG | - | chr4.2:34562865-34562884 | MS.gene90957:CDS | 45.0% |
! | TCATGAGAACTAGGGTTAGC+AGG | + | chr4.2:34562415-34562434 | None:intergenic | 45.0% |
! | TGATGATTCCGGGTTTGCTT+AGG | - | chr4.2:34563070-34563089 | MS.gene90957:CDS | 45.0% |
! | TGCAGAGATCAGTAACGGAA+AGG | - | chr4.2:34563878-34563897 | MS.gene90957:CDS | 45.0% |
! | TGCTAACCCTAGTTCTCATG+AGG | - | chr4.2:34562414-34562433 | MS.gene90957:CDS | 45.0% |
! | TTTTGGATTTCGTGTGAGGC+CGG | - | chr4.2:34562769-34562788 | MS.gene90957:CDS | 45.0% |
!! | CAGTTTGAGGTGTCGATTGT+AGG | + | chr4.2:34562259-34562278 | None:intergenic | 45.0% |
!! | GGTGCTAAGTTGATGATTCC+GGG | - | chr4.2:34563060-34563079 | MS.gene90957:CDS | 45.0% |
!! | GGTTTAGTTCTTGGTGTTGG+TGG | - | chr4.2:34562823-34562842 | MS.gene90957:CDS | 45.0% |
!! | GTTAAGAAGGATGATGGGGA+AGG | - | chr4.2:34563474-34563493 | MS.gene90957:CDS | 45.0% |
!!! | TGCTGGTTTTGTGGTTGTTC+TGG | + | chr4.2:34562205-34562224 | None:intergenic | 45.0% |
AAGGGCAATAGCTTCACCCT+TGG | + | chr4.2:34563142-34563161 | None:intergenic | 50.0% | |
AAGGGTGAAGCTATTGCCCT+TGG | - | chr4.2:34563141-34563160 | MS.gene90957:CDS | 50.0% | |
AGAGAGAGATGGGGACATGA+TGG | + | chr4.2:34562140-34562159 | None:intergenic | 50.0% | |
AGCTGCTGCATCTTCTGATG+AGG | - | chr4.2:34563674-34563693 | MS.gene90957:CDS | 50.0% | |
AGCTTAGGAGGGTTAGGTCT+GGG | - | chr4.2:34562857-34562876 | MS.gene90957:CDS | 50.0% | |
AGTGACCAGTACGGACATTG+AGG | + | chr4.2:34562309-34562328 | None:intergenic | 50.0% | |
ATAAGCACAACCTCCTCACC+AGG | + | chr4.2:34563114-34563133 | None:intergenic | 50.0% | |
ATGTCCCCATCTCTCTCTGA+AGG | - | chr4.2:34562142-34562161 | MS.gene90957:CDS | 50.0% | |
CAGGGAAGCTGGATAAGCAT+GGG | - | chr4.2:34563310-34563329 | MS.gene90957:CDS | 50.0% | |
CGAGCTACCTTAGCAACATC+AGG | + | chr4.2:34562616-34562635 | None:intergenic | 50.0% | |
CTTGCCTTCAGAGAGAGATG+GGG | + | chr4.2:34562149-34562168 | None:intergenic | 50.0% | |
GAAAGTAGATGAAGCGGCTG+TGG | - | chr4.2:34563593-34563612 | MS.gene90957:CDS | 50.0% | |
GAAATGGGGTTTGGGTCCTA+GGG | - | chr4.2:34563260-34563279 | MS.gene90957:CDS | 50.0% | |
GAGGAGGGTTGTTATGCCTT+TGG | - | chr4.2:34562972-34562991 | MS.gene90957:CDS | 50.0% | |
GAGGGTTGTTATGCCTTTGG+AGG | - | chr4.2:34562975-34562994 | MS.gene90957:CDS | 50.0% | |
GTACTCCTCAAGAGTGGATG+AGG | - | chr4.2:34563346-34563365 | MS.gene90957:CDS | 50.0% | |
GTGAGGCCGGTACTTATGTT+AGG | - | chr4.2:34562782-34562801 | MS.gene90957:CDS | 50.0% | |
TCAGCAATGGGTCGTTTGAG+AGG | + | chr4.2:34562358-34562377 | None:intergenic | 50.0% | |
TGCAAGAGCTTAGGAGGGTT+AGG | - | chr4.2:34562851-34562870 | MS.gene90957:CDS | 50.0% | |
TGCTGATGAAGAGGGTGAGA+AGG | - | chr4.2:34563452-34563471 | MS.gene90957:CDS | 50.0% | |
TGGACTTCTTAGCAGGAGCA+GGG | + | chr4.2:34563533-34563552 | None:intergenic | 50.0% | |
TTCTCAGACTTGTCCACCTC+AGG | + | chr4.2:34563819-34563838 | None:intergenic | 50.0% | |
TTGGACTTCTTAGCAGGAGC+AGG | + | chr4.2:34563534-34563553 | None:intergenic | 50.0% | |
! | GAGGGTTAGGTCTGGGATTA+TGG | - | chr4.2:34562864-34562883 | MS.gene90957:CDS | 50.0% |
! | GTCTGGGATTATGGGTGAGA+AGG | - | chr4.2:34562873-34562892 | MS.gene90957:CDS | 50.0% |
AGCCGCCATACCAGCAATCA+CGG | + | chr4.2:34563400-34563419 | None:intergenic | 55.0% | |
AGGTGAGTGACCAGCTGGAA+GGG | + | chr4.2:34562338-34562357 | None:intergenic | 55.0% | |
AGTAGATGAAGCGGCTGTGG+AGG | - | chr4.2:34563596-34563615 | MS.gene90957:CDS | 55.0% | |
GACCAGTACGGACATTGAGG+CGG | + | chr4.2:34562306-34562325 | None:intergenic | 55.0% | |
GAGCTTAGGAGGGTTAGGTC+TGG | - | chr4.2:34562856-34562875 | MS.gene90957:CDS | 55.0% | |
GCAGGGAAGCTGGATAAGCA+TGG | - | chr4.2:34563309-34563328 | MS.gene90957:CDS | 55.0% | |
GGAAATGGGGTTTGGGTCCT+AGG | - | chr4.2:34563259-34563278 | MS.gene90957:CDS | 55.0% | |
GGACCCAAACCCCATTTCCT+CGG | + | chr4.2:34563258-34563277 | None:intergenic | 55.0% | |
TTGAGAGGTGAGTGACCAGC+TGG | + | chr4.2:34562343-34562362 | None:intergenic | 55.0% | |
! | GGGGGGTATAGTGACCAGTA+CGG | + | chr4.2:34562318-34562337 | None:intergenic | 55.0% |
CACTATACCCCCCTTCCAGC+TGG | - | chr4.2:34562325-34562344 | MS.gene90957:CDS | 60.0% | |
CGCCGTGATTGCTGGTATGG+CGG | - | chr4.2:34563395-34563414 | MS.gene90957:CDS | 60.0% | |
CTGGTATGGCGGCTGCTACT+GGG | - | chr4.2:34563406-34563425 | MS.gene90957:CDS | 60.0% | |
GACCGCCTCAATGTCCGTAC+TGG | - | chr4.2:34562301-34562320 | MS.gene90957:CDS | 60.0% | |
GAGGTGAGTGACCAGCTGGA+AGG | + | chr4.2:34562339-34562358 | None:intergenic | 60.0% | |
GCTGATTGCTGCAGGGAAGC+TGG | - | chr4.2:34563299-34563318 | MS.gene90957:CDS | 60.0% | |
GGACGCCGTGATTGCTGGTA+TGG | - | chr4.2:34563392-34563411 | MS.gene90957:CDS | 60.0% | |
GGTGAGTGACCAGCTGGAAG+GGG | + | chr4.2:34562337-34562356 | None:intergenic | 60.0% | |
GTCGAGAAGACGGGTCACAG+TGG | - | chr4.2:34562466-34562485 | MS.gene90957:CDS | 60.0% | |
GTGAGTGACCAGCTGGAAGG+GGG | + | chr4.2:34562336-34562355 | None:intergenic | 60.0% | |
TGAGTGACCAGCTGGAAGGG+GGG | + | chr4.2:34562335-34562354 | None:intergenic | 60.0% | |
!! | GAGTGAAGTCGGTTCGCCTG+AGG | - | chr4.2:34563800-34563819 | MS.gene90957:CDS | 60.0% |
!! | TGAAGTCGGTTCGCCTGAGG+TGG | - | chr4.2:34563803-34563822 | MS.gene90957:CDS | 60.0% |
ATCACGGCGTCCCCACCAGT+AGG | + | chr4.2:34563384-34563403 | None:intergenic | 65.0% | |
GCTGGTATGGCGGCTGCTAC+TGG | - | chr4.2:34563405-34563424 | MS.gene90957:CDS | 65.0% | |
GGTGGGGACGCCGTGATTGC+TGG | - | chr4.2:34563387-34563406 | MS.gene90957:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.2 | gene | 34562130 | 34563971 | 34562130 | ID=MS.gene90957 |
chr4.2 | mRNA | 34562130 | 34563971 | 34562130 | ID=MS.gene90957.t1;Parent=MS.gene90957 |
chr4.2 | exon | 34562130 | 34563971 | 34562130 | ID=MS.gene90957.t1.exon1;Parent=MS.gene90957.t1 |
chr4.2 | CDS | 34562130 | 34563971 | 34562130 | ID=cds.MS.gene90957.t1;Parent=MS.gene90957.t1 |
Gene Sequence |
Protein sequence |