AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene90957


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene90957.t1 MTR_4g074160 98.042 613 11 1 1 613 1 612 0.0 1215
MS.gene90957.t1 MTR_6g004400 30.348 201 106 5 80 246 346 546 4.80e-23 103
MS.gene90957.t1 MTR_6g004400 40.244 82 49 0 80 161 346 427 8.90e-12 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene90957.t1 AT3G57150 80.171 469 77 6 9 475 6 460 0.0 736
MS.gene90957.t1 AT5G14460 31.771 192 97 5 89 246 323 514 2.15e-23 104

Find 158 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGGGTTAGGTCTGGGATTA+TGG 0.176925 4.2:-34563215 MS.gene90957:CDS
AGCCGCTTCATCTACTTTCT+TGG 0.219661 4.2:+34562490 None:intergenic
GTTCATTTGGGTTTAGTTCT+TGG 0.230459 4.2:-34563265 MS.gene90957:CDS
AGAAACATTTAGTTGTGTTT+TGG 0.271760 4.2:-34563327 MS.gene90957:CDS
TGGTGCTAAGTTGATGATTC+CGG 0.283073 4.2:-34563020 MS.gene90957:CDS
GATCTCTGCAGCATTATCTT+TGG 0.294718 4.2:+34562214 None:intergenic
GCTGGTATGGCGGCTGCTAC+TGG 0.295017 4.2:-34562674 MS.gene90957:CDS
TAGGACTATGTGTGTTCATT+TGG 0.300884 4.2:-34563278 MS.gene90957:CDS
TTCTGGTTCTGTATCTTTGT+TGG 0.332866 4.2:+34563894 None:intergenic
ATGTCTTCACCTATTCTTCT+TGG 0.341008 4.2:+34562120 None:intergenic
GAGGAGGGTTGTTATGCCTT+TGG 0.341470 4.2:-34563107 MS.gene90957:CDS
ACTCTTGATCCTAAGGTTAC+TGG 0.345085 4.2:-34563589 MS.gene90957:CDS
ACCATCAACTTCAGCAACTT+TGG 0.346981 4.2:+34562529 None:intergenic
GGAAATGGGGTTTGGGTCCT+AGG 0.348440 4.2:-34562820 MS.gene90957:CDS
CGTGCTCTTGAAACTTTAAC+TGG 0.360375 4.2:-34563445 MS.gene90957:CDS
TATGGGTGAGAAGGATAATA+TGG 0.361091 4.2:-34563197 MS.gene90957:CDS
GGTGCTAAGTTGATGATTCC+GGG 0.361757 4.2:-34563019 MS.gene90957:CDS
CAGTTTGAGGTGTCGATTGT+AGG 0.363827 4.2:+34563823 None:intergenic
TTTGACTAGTTATAAGAGAT+TGG 0.369510 4.2:-34563077 MS.gene90957:CDS
GGGATACTTATCCGAGGAAA+TGG 0.370351 4.2:-34562835 MS.gene90957:CDS
GTTTGATCATGAAATCTTGC+TGG 0.372543 4.2:+34563860 None:intergenic
TGTCTTCACCTATTCTTCTT+GGG 0.379511 4.2:+34562121 None:intergenic
ATTGCTGATTATCTGAAATA+TGG 0.384973 4.2:-34563709 MS.gene90957:CDS
AGGACTATGTGTGTTCATTT+GGG 0.389668 4.2:-34563277 MS.gene90957:CDS
GGTGGGGACGCCGTGATTGC+TGG 0.392518 4.2:-34562692 MS.gene90957:CDS
CAAAGATGCCCAAGAAGAAT+AGG 0.398166 4.2:-34562129 None:intergenic
GGTTACTATGCATGATGTTA+TGG 0.406717 4.2:-34563176 MS.gene90957:CDS
TTCTCAGACTTGTCCACCTC+AGG 0.408947 4.2:+34562263 None:intergenic
TTATCCGAGGAAATGGGGTT+TGG 0.409185 4.2:-34562828 MS.gene90957:CDS
CAACAAAATGGGCCAGTTTG+AGG 0.417673 4.2:+34563810 None:intergenic
CTGGTATGGCGGCTGCTACT+GGG 0.423425 4.2:-34562673 MS.gene90957:CDS
TAAGATCAAGAGGGTGGTTA+TGG 0.424039 4.2:-34562861 MS.gene90957:CDS
TTGGACTTCTTAGCAGGAGC+AGG 0.428365 4.2:+34562548 None:intergenic
AGGGTTAGGTCTGGGATTAT+GGG 0.428508 4.2:-34563214 MS.gene90957:CDS
TGATGATTCCGGGTTTGCTT+AGG 0.429928 4.2:-34563009 MS.gene90957:CDS
GCTGATTGCTGCAGGGAAGC+TGG 0.431749 4.2:-34562780 MS.gene90957:CDS
TCAAGAGGGTGGTTATGGAT+AGG 0.433226 4.2:-34562856 MS.gene90957:CDS
GGATACTTATCCGAGGAAAT+GGG 0.435995 4.2:-34562834 MS.gene90957:CDS
AAGAAGAAGGATAAAGAGAA+TGG 0.436116 4.2:-34562428 MS.gene90957:CDS
GCTGTGAATGCTATTTGTTA+TGG 0.437584 4.2:-34563040 MS.gene90957:CDS
TGAGATGACTACTGCTGTTA+TGG 0.438520 4.2:-34562909 MS.gene90957:CDS
TATCCGAGGAAATGGGGTTT+GGG 0.438978 4.2:-34562827 MS.gene90957:CDS
TCTTGAGGAGTACTTTCATT+CGG 0.440773 4.2:+34562743 None:intergenic
AGGTGAGTGACCAGCTGGAA+GGG 0.444423 4.2:+34563744 None:intergenic
AGAGGGTGAGAAGGTTAAGA+AGG 0.448672 4.2:-34562618 MS.gene90957:CDS
TTATAAGAGATTGGTCGTTA+AGG 0.450138 4.2:-34563068 MS.gene90957:CDS
AGCTTAGGAGGGTTAGGTCT+GGG 0.450353 4.2:-34563222 MS.gene90957:CDS
CAAGAGGGTGGTTATGGATA+GGG 0.456296 4.2:-34562855 MS.gene90957:CDS
TCTTGCCTTCAGAGAGAGAT+GGG 0.460200 4.2:+34563932 None:intergenic
GTGAGGCCGGTACTTATGTT+AGG 0.460583 4.2:-34563297 MS.gene90957:CDS
GCAACTTTGGACTTCTTAGC+AGG 0.461403 4.2:+34562542 None:intergenic
AAGAAGAAGCTGATTGCTGC+AGG 0.463700 4.2:-34562788 MS.gene90957:CDS
GGACGCCGTGATTGCTGGTA+TGG 0.464126 4.2:-34562687 MS.gene90957:CDS
CTCTTGATCCTAAGGTTACT+GGG 0.467083 4.2:-34563588 MS.gene90957:CDS
CTACAATCGACACCTCAAAC+TGG 0.467674 4.2:-34563822 MS.gene90957:CDS
TTGGGTTTAGTTCTTGGTGT+TGG 0.469171 4.2:-34563259 MS.gene90957:CDS
GTTCTCATGAGGTTGTTGCT+TGG 0.470108 4.2:-34563654 MS.gene90957:CDS
TTCTTGCCTTCAGAGAGAGA+TGG 0.474253 4.2:+34563931 None:intergenic
TGCTGTTCCTGATGTTGCTA+AGG 0.476360 4.2:-34563473 MS.gene90957:CDS
TCCAAAGTTGCTGAAGTTGA+TGG 0.479321 4.2:-34562530 MS.gene90957:CDS
GAGGGTTGTTATGCCTTTGG+AGG 0.479919 4.2:-34563104 MS.gene90957:CDS
GGTTTAGTTCTTGGTGTTGG+TGG 0.480018 4.2:-34563256 MS.gene90957:CDS
GCAACAACCTCATGAGAACT+AGG 0.480488 4.2:+34563658 None:intergenic
TGCAAGAGCTTAGGAGGGTT+AGG 0.482197 4.2:-34563228 MS.gene90957:CDS
CAGTGGTACTCTTGATCCTA+AGG 0.482757 4.2:-34563596 MS.gene90957:CDS
GTCTGGGATTATGGGTGAGA+AGG 0.485087 4.2:-34563206 MS.gene90957:CDS
TGCTCAGTATGTTTATGATA+AGG 0.488747 4.2:-34563152 MS.gene90957:CDS
GAGCTTAGGAGGGTTAGGTC+TGG 0.490050 4.2:-34563223 MS.gene90957:CDS
TGATGAGGAGAAGGTTGAAA+AGG 0.490781 4.2:-34562390 MS.gene90957:CDS
AAGAGTATGTTTGTATTGCT+AGG 0.493913 4.2:-34563504 MS.gene90957:CDS
GAGAAGGTTAAGAAGGATGA+TGG 0.494500 4.2:-34562611 MS.gene90957:CDS
TCATGAGAACTAGGGTTAGC+AGG 0.495387 4.2:+34563667 None:intergenic
AGAAGGTTAAGAAGGATGAT+GGG 0.497001 4.2:-34562610 MS.gene90957:CDS
GTGAAATCTCAACAAGGTGC+TGG 0.499500 4.2:-34563529 MS.gene90957:CDS
GGTGAGTGACCAGCTGGAAG+GGG 0.501707 4.2:+34563745 None:intergenic
CACAAGGAAAAGGGTGAAGA+TGG 0.502250 4.2:-34562353 MS.gene90957:CDS
ATCAAATTCCCAGTAACCTT+AGG 0.503949 4.2:+34563580 None:intergenic
CGAGCTACCTTAGCAACATC+AGG 0.506820 4.2:+34563466 None:intergenic
GTCATATGCAAGAGCTTAGG+AGG 0.508607 4.2:-34563234 MS.gene90957:CDS
TATTCTTCGTGTCGAGAAGA+CGG 0.508925 4.2:-34563623 MS.gene90957:CDS
GAAAGTAGATGAAGCGGCTG+TGG 0.509335 4.2:-34562486 MS.gene90957:CDS
GAAATGGGGTTTGGGTCCTA+GGG 0.510777 4.2:-34562819 MS.gene90957:CDS
AAAGAGGTTGCTGATGAAGA+GGG 0.510792 4.2:-34562635 MS.gene90957:CDS
TGCTGATGAAGAGGGTGAGA+AGG 0.511607 4.2:-34562627 MS.gene90957:CDS
TTGAGAGGTGAGTGACCAGC+TGG 0.515974 4.2:+34563739 None:intergenic
ATTCTTCGTGTCGAGAAGAC+GGG 0.516109 4.2:-34563622 MS.gene90957:CDS
GTTATGGCTACTTGTGATCA+TGG 0.518206 4.2:-34562893 MS.gene90957:CDS
AGAGCGATGAGACTTATTTG+AGG 0.518362 4.2:-34563126 MS.gene90957:CDS
GTGGTCATATGCAAGAGCTT+AGG 0.520527 4.2:-34563237 MS.gene90957:CDS
AGAGAGAGATGGGGACATGA+TGG 0.524072 4.2:+34563942 None:intergenic
GTACTCCTCAAGAGTGGATG+AGG 0.525760 4.2:-34562733 MS.gene90957:CDS
CGATGAGACTTATTTGAGGA+GGG 0.530709 4.2:-34563122 MS.gene90957:CDS
GACCGCCTCAATGTCCGTAC+TGG 0.533848 4.2:-34563778 MS.gene90957:CDS
TATTTCAGATAATCAGCAAT+GGG 0.541396 4.2:+34563712 None:intergenic
TGAAGTCGGTTCGCCTGAGG+TGG 0.545768 4.2:-34562276 MS.gene90957:CDS
TGCATCTTCTGATGAGGAGA+AGG 0.555918 4.2:-34562399 MS.gene90957:CDS
AGCCGCCATACCAGCAATCA+CGG 0.555963 4.2:+34562682 None:intergenic
TTCTCAAACCTAAGCAAACC+CGG 0.556341 4.2:+34563001 None:intergenic
GTGAGTGACCAGCTGGAAGG+GGG 0.556834 4.2:+34563746 None:intergenic
TGAAGATGGTTCTCCTGAAG+TGG 0.558835 4.2:-34562339 MS.gene90957:CDS
AAGGGTGAAGCTATTGCCCT+TGG 0.558857 4.2:-34562938 MS.gene90957:CDS
TTAAGAAGGATGATGGGGAA+GGG 0.559638 4.2:-34562604 MS.gene90957:CDS
GGACCCAAACCCCATTTCCT+CGG 0.561902 4.2:+34562824 None:intergenic
GTTAAGAAGGATGATGGGGA+AGG 0.562363 4.2:-34562605 MS.gene90957:CDS
GACCAAGAAAGTAGATGAAG+CGG 0.563615 4.2:-34562492 MS.gene90957:CDS
CTGCTGTTAAGAGACAACTT+AGG 0.565713 4.2:-34563393 MS.gene90957:CDS
ATGTCCCCATCTCTCTCTGA+AGG 0.569959 4.2:-34563937 MS.gene90957:CDS
AGTAGATGAAGCGGCTGTGG+AGG 0.570309 4.2:-34562483 MS.gene90957:CDS
TGGACTTCTTAGCAGGAGCA+GGG 0.572350 4.2:+34562549 None:intergenic
GCAGGGAAGCTGGATAAGCA+TGG 0.572801 4.2:-34562770 MS.gene90957:CDS
CGCCGTGATTGCTGGTATGG+CGG 0.577954 4.2:-34562684 MS.gene90957:CDS
TTCTTCTTCATAGAAGCCCT+AGG 0.578222 4.2:+34562803 None:intergenic
ATAAGCACAACCTCCTCACC+AGG 0.579419 4.2:+34562968 None:intergenic
CACAAGGAAACGAGTGAAGT+CGG 0.580195 4.2:-34562290 MS.gene90957:CDS
GCGATGAGACTTATTTGAGG+AGG 0.584233 4.2:-34563123 MS.gene90957:CDS
AAGGGCAATAGCTTCACCCT+TGG 0.584541 4.2:+34562940 None:intergenic
CAGGGAAGCTGGATAAGCAT+GGG 0.585096 4.2:-34562769 MS.gene90957:CDS
TCAGCAATGGGTCGTTTGAG+AGG 0.590490 4.2:+34563724 None:intergenic
GAAAGAGGTTGCTGATGAAG+AGG 0.591372 4.2:-34562636 MS.gene90957:CDS
GAGGTGAGTGACCAGCTGGA+AGG 0.595183 4.2:+34563743 None:intergenic
CATAGTCCTAACATAAGTAC+CGG 0.600318 4.2:+34563291 None:intergenic
ACATTCCTCATCCACTCTTG+AGG 0.608152 4.2:+34562728 None:intergenic
GAAGGTTAAGAAGGATGATG+GGG 0.610370 4.2:-34562609 MS.gene90957:CDS
CTAGTCAAAAGAACCTCCAA+AGG 0.615878 4.2:+34563091 None:intergenic
TATTGACAGAGCAACGAGGT+TGG 0.616767 4.2:-34563551 MS.gene90957:CDS
TGAGTGACCAGCTGGAAGGG+GGG 0.617538 4.2:+34563747 None:intergenic
GATACTTATCCGAGGAAATG+GGG 0.621162 4.2:-34562833 MS.gene90957:CDS
AGTGACCAGTACGGACATTG+AGG 0.623451 4.2:+34563773 None:intergenic
CTCTTAACAGCAGAAATCAA+AGG 0.625059 4.2:+34563403 None:intergenic
ATATTTCAGATAATCAGCAA+TGG 0.627850 4.2:+34563711 None:intergenic
TGCAGAGATCAGTAACGGAA+AGG 0.627993 4.2:-34562201 MS.gene90957:CDS
ATGAAAGTACTCCTCAAGAG+TGG 0.631391 4.2:-34562739 MS.gene90957:CDS
GTATTGTTGCTAAGATCAAG+AGG 0.631960 4.2:-34562871 MS.gene90957:CDS
CAACAACCTCATGAGAACTA+GGG 0.632219 4.2:+34563659 None:intergenic
GAGTGAAGTCGGTTCGCCTG+AGG 0.633165 4.2:-34562279 MS.gene90957:CDS
TGCTAACCCTAGTTCTCATG+AGG 0.636176 4.2:-34563665 MS.gene90957:CDS
AATGCTGCAGAGATCAGTAA+CGG 0.637087 4.2:-34562206 MS.gene90957:CDS
TAGTCATCTCAGCAATACCA+AGG 0.640655 4.2:+34562921 None:intergenic
AGCTGCTGCATCTTCTGATG+AGG 0.641491 4.2:-34562405 MS.gene90957:CDS
GACTGAAGATGTGAAGAAAG+AGG 0.647185 4.2:-34562651 MS.gene90957:CDS
TTTGAGAATGATATTGAACC+TGG 0.653930 4.2:-34562986 MS.gene90957:CDS
TTAACAGCAGAAATCAAAGG+TGG 0.656440 4.2:+34563406 None:intergenic
AGAAGAAGCTGATTGCTGCA+GGG 0.658320 4.2:-34562787 MS.gene90957:CDS
GGTTGTGCTTATGACTACCA+AGG 0.659102 4.2:-34562957 MS.gene90957:CDS
TGTTGCTAAGATCAAGAGGG+TGG 0.661471 4.2:-34562867 MS.gene90957:CDS
CTTGCCTTCAGAGAGAGATG+GGG 0.670821 4.2:+34563933 None:intergenic
GAATGATATTGAACCTGGTG+AGG 0.674019 4.2:-34562981 MS.gene90957:CDS
ATCACGGCGTCCCCACCAGT+AGG 0.679551 4.2:+34562698 None:intergenic
AGTCATCTCAGCAATACCAA+GGG 0.685774 4.2:+34562922 None:intergenic
TGATATTGAACCTGGTGAGG+AGG 0.686276 4.2:-34562978 MS.gene90957:CDS
GTTGTGCTTATGACTACCAA+GGG 0.691718 4.2:-34562956 MS.gene90957:CDS
GACCAGTACGGACATTGAGG+CGG 0.696590 4.2:+34563776 None:intergenic
TATTGTTGCTAAGATCAAGA+GGG 0.700862 4.2:-34562870 MS.gene90957:CDS
TGGATAGGGATACTTATCCG+AGG 0.711704 4.2:-34562841 MS.gene90957:CDS
TCATATGCAAGAGCTTAGGA+GGG 0.728673 4.2:-34563233 MS.gene90957:CDS
AGGTTGGTGAAATCTCAACA+AGG 0.729026 4.2:-34563535 MS.gene90957:CDS
GTCGAGAAGACGGGTCACAG+TGG 0.744339 4.2:-34563613 MS.gene90957:CDS
TTTGTATTGACAGAGCAACG+AGG 0.787641 4.2:-34563555 MS.gene90957:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AAAGAAGAAGAAAAAGAAGA+AGG - chr4.2:34563638-34563657 MS.gene90957:CDS 25.0%
! ATATTTCAGATAATCAGCAA+TGG + chr4.2:34562371-34562390 None:intergenic 25.0%
! TATTTCAGATAATCAGCAAT+GGG + chr4.2:34562370-34562389 None:intergenic 25.0%
!! AGAAACATTTAGTTGTGTTT+TGG - chr4.2:34562752-34562771 MS.gene90957:CDS 25.0%
!! ATTGCTGATTATCTGAAATA+TGG - chr4.2:34562370-34562389 MS.gene90957:CDS 25.0%
!! TTTGACTAGTTATAAGAGAT+TGG - chr4.2:34563002-34563021 MS.gene90957:CDS 25.0%
!!! TCGTAGTTTTTCAACAAAAT+GGG + chr4.2:34562283-34562302 None:intergenic 25.0%
AAGAAGAAGGATAAAGAGAA+TGG - chr4.2:34563651-34563670 MS.gene90957:CDS 30.0%
TATTGTTGCTAAGATCAAGA+GGG - chr4.2:34563209-34563228 MS.gene90957:CDS 30.0%
TGCTCAGTATGTTTATGATA+AGG - chr4.2:34562927-34562946 MS.gene90957:CDS 30.0%
TTTGAGAATGATATTGAACC+TGG - chr4.2:34563093-34563112 MS.gene90957:CDS 30.0%
! AAAAAGAAGCACAAGGAAAA+GGG - chr4.2:34563717-34563736 MS.gene90957:CDS 30.0%
! AAGAGTATGTTTGTATTGCT+AGG - chr4.2:34562575-34562594 MS.gene90957:CDS 30.0%
! ATTGTAGGTGTAAGTTTTTC+AGG + chr4.2:34562244-34562263 None:intergenic 30.0%
! TTATAAGAGATTGGTCGTTA+AGG - chr4.2:34563011-34563030 MS.gene90957:CDS 30.0%
!! GTCGTAGTTTTTCAACAAAA+TGG + chr4.2:34562284-34562303 None:intergenic 30.0%
AGAAGGTTAAGAAGGATGAT+GGG - chr4.2:34563469-34563488 MS.gene90957:CDS 35.0%
AGGACTATGTGTGTTCATTT+GGG - chr4.2:34562802-34562821 MS.gene90957:CDS 35.0%
ATCAAATTCCCAGTAACCTT+AGG + chr4.2:34562502-34562521 None:intergenic 35.0%
CATAGTCCTAACATAAGTAC+CGG + chr4.2:34562791-34562810 None:intergenic 35.0%
CTCTTAACAGCAGAAATCAA+AGG + chr4.2:34562679-34562698 None:intergenic 35.0%
GGTTACTATGCATGATGTTA+TGG - chr4.2:34562903-34562922 MS.gene90957:CDS 35.0%
GTATTGTTGCTAAGATCAAG+AGG - chr4.2:34563208-34563227 MS.gene90957:CDS 35.0%
GTTTGATCATGAAATCTTGC+TGG + chr4.2:34562222-34562241 None:intergenic 35.0%
TAGGACTATGTGTGTTCATT+TGG - chr4.2:34562801-34562820 MS.gene90957:CDS 35.0%
TATGGGTGAGAAGGATAATA+TGG - chr4.2:34562882-34562901 MS.gene90957:CDS 35.0%
TTAACAGCAGAAATCAAAGG+TGG + chr4.2:34562676-34562695 None:intergenic 35.0%
! GAAAAAGAAGCACAAGGAAA+AGG - chr4.2:34563716-34563735 MS.gene90957:CDS 35.0%
! GAAGAAGAAAAAGAAGCACA+AGG - chr4.2:34563773-34563792 MS.gene90957:CDS 35.0%
! GCTGTGAATGCTATTTGTTA+TGG - chr4.2:34563039-34563058 MS.gene90957:CDS 35.0%
!! GTTCATTTGGGTTTAGTTCT+TGG - chr4.2:34562814-34562833 MS.gene90957:CDS 35.0%
!! TCTTGAGGAGTACTTTCATT+CGG + chr4.2:34563339-34563358 None:intergenic 35.0%
!! TTCTGGTTCTGTATCTTTGT+TGG + chr4.2:34562188-34562207 None:intergenic 35.0%
!!! AATGTTGTTTTACCTACTGG+TGG - chr4.2:34563369-34563388 MS.gene90957:CDS 35.0%
!!! AGGAATGTTGTTTTACCTAC+TGG - chr4.2:34563366-34563385 MS.gene90957:CDS 35.0%
!!! ATGAAATCTTGCTGGTTTTG+TGG + chr4.2:34562214-34562233 None:intergenic 35.0%
!!! ATGTTGTTTTACCTACTGGT+GGG - chr4.2:34563370-34563389 MS.gene90957:CDS 35.0%
AAAGAGGTTGCTGATGAAGA+GGG - chr4.2:34563444-34563463 MS.gene90957:CDS 40.0%
AATGCTGCAGAGATCAGTAA+CGG - chr4.2:34563873-34563892 MS.gene90957:CDS 40.0%
ACCATCAACTTCAGCAACTT+TGG + chr4.2:34563553-34563572 None:intergenic 40.0%
ACTCTTGATCCTAAGGTTAC+TGG - chr4.2:34562490-34562509 MS.gene90957:CDS 40.0%
AGAGCGATGAGACTTATTTG+AGG - chr4.2:34562953-34562972 MS.gene90957:CDS 40.0%
AGTCATCTCAGCAATACCAA+GGG + chr4.2:34563160-34563179 None:intergenic 40.0%
CAACAACCTCATGAGAACTA+GGG + chr4.2:34562423-34562442 None:intergenic 40.0%
CGATGAGACTTATTTGAGGA+GGG - chr4.2:34562957-34562976 MS.gene90957:CDS 40.0%
CGTGCTCTTGAAACTTTAAC+TGG - chr4.2:34562634-34562653 MS.gene90957:CDS 40.0%
CTAGTCAAAAGAACCTCCAA+AGG + chr4.2:34562991-34563010 None:intergenic 40.0%
CTCTTGATCCTAAGGTTACT+GGG - chr4.2:34562491-34562510 MS.gene90957:CDS 40.0%
CTGCTGTTAAGAGACAACTT+AGG - chr4.2:34562686-34562705 MS.gene90957:CDS 40.0%
GAAGGTTAAGAAGGATGATG+GGG - chr4.2:34563470-34563489 MS.gene90957:CDS 40.0%
GAATGATATTGAACCTGGTG+AGG - chr4.2:34563098-34563117 MS.gene90957:CDS 40.0%
GACCAAGAAAGTAGATGAAG+CGG - chr4.2:34563587-34563606 MS.gene90957:CDS 40.0%
GACTGAAGATGTGAAGAAAG+AGG - chr4.2:34563428-34563447 MS.gene90957:CDS 40.0%
GAGAAGGTTAAGAAGGATGA+TGG - chr4.2:34563468-34563487 MS.gene90957:CDS 40.0%
GATACTTATCCGAGGAAATG+GGG - chr4.2:34563246-34563265 MS.gene90957:CDS 40.0%
GATCTCTGCAGCATTATCTT+TGG + chr4.2:34563868-34563887 None:intergenic 40.0%
GGATACTTATCCGAGGAAAT+GGG - chr4.2:34563245-34563264 MS.gene90957:CDS 40.0%
GTTATGGCTACTTGTGATCA+TGG - chr4.2:34563186-34563205 MS.gene90957:CDS 40.0%
GTTGTGCTTATGACTACCAA+GGG - chr4.2:34563123-34563142 MS.gene90957:CDS 40.0%
TAAGATCAAGAGGGTGGTTA+TGG - chr4.2:34563218-34563237 MS.gene90957:CDS 40.0%
TAGTCATCTCAGCAATACCA+AGG + chr4.2:34563161-34563180 None:intergenic 40.0%
TATTCTTCGTGTCGAGAAGA+CGG - chr4.2:34562456-34562475 MS.gene90957:CDS 40.0%
TCATATGCAAGAGCTTAGGA+GGG - chr4.2:34562846-34562865 MS.gene90957:CDS 40.0%
TCCAAAGTTGCTGAAGTTGA+TGG - chr4.2:34563549-34563568 MS.gene90957:CDS 40.0%
TGAGATGACTACTGCTGTTA+TGG - chr4.2:34563170-34563189 MS.gene90957:CDS 40.0%
TGATGAGGAGAAGGTTGAAA+AGG - chr4.2:34563689-34563708 MS.gene90957:CDS 40.0%
TTCTCAAACCTAAGCAAACC+CGG + chr4.2:34563081-34563100 None:intergenic 40.0%
TTCTTCTTCATAGAAGCCCT+AGG + chr4.2:34563279-34563298 None:intergenic 40.0%
! GGAGAAGAAAAAGAAGCACA+AGG - chr4.2:34563710-34563729 MS.gene90957:CDS 40.0%
! TTCTCAGACTTTTCCACTTC+AGG + chr4.2:34563756-34563775 None:intergenic 40.0%
! TTTGTATTGACAGAGCAACG+AGG - chr4.2:34562524-34562543 MS.gene90957:CDS 40.0%
!! AGGTTGGTGAAATCTCAACA+AGG - chr4.2:34562544-34562563 MS.gene90957:CDS 40.0%
!! ATGAAAGTACTCCTCAAGAG+TGG - chr4.2:34563340-34563359 MS.gene90957:CDS 40.0%
!! TGGTGCTAAGTTGATGATTC+CGG - chr4.2:34563059-34563078 MS.gene90957:CDS 40.0%
!! TGTGTTTTGGATTTCGTGTG+AGG - chr4.2:34562765-34562784 MS.gene90957:CDS 40.0%
!! TTAAGAAGGATGATGGGGAA+GGG - chr4.2:34563475-34563494 MS.gene90957:CDS 40.0%
!! TTGGGTTTAGTTCTTGGTGT+TGG - chr4.2:34562820-34562839 MS.gene90957:CDS 40.0%
!!! TGTTGTTTTACCTACTGGTG+GGG - chr4.2:34563371-34563390 MS.gene90957:CDS 40.0%
AAGAAGAAGCTGATTGCTGC+AGG - chr4.2:34563291-34563310 MS.gene90957:CDS 45.0%
ACATTCCTCATCCACTCTTG+AGG + chr4.2:34563354-34563373 None:intergenic 45.0%
AGAAGAAGCTGATTGCTGCA+GGG - chr4.2:34563292-34563311 MS.gene90957:CDS 45.0%
AGAGGGTGAGAAGGTTAAGA+AGG - chr4.2:34563461-34563480 MS.gene90957:CDS 45.0%
AGCCGCTTCATCTACTTTCT+TGG + chr4.2:34563592-34563611 None:intergenic 45.0%
ATTCTTCGTGTCGAGAAGAC+GGG - chr4.2:34562457-34562476 MS.gene90957:CDS 45.0%
CAACAAAATGGGCCAGTTTG+AGG + chr4.2:34562272-34562291 None:intergenic 45.0%
CAAGAGGGTGGTTATGGATA+GGG - chr4.2:34563224-34563243 MS.gene90957:CDS 45.0%
CACAAGGAAAAGGGTGAAGA+TGG - chr4.2:34563726-34563745 MS.gene90957:CDS 45.0%
CACAAGGAAACGAGTGAAGT+CGG - chr4.2:34563789-34563808 MS.gene90957:CDS 45.0%
CAGTGGTACTCTTGATCCTA+AGG - chr4.2:34562483-34562502 MS.gene90957:CDS 45.0%
CTACAATCGACACCTCAAAC+TGG - chr4.2:34562257-34562276 MS.gene90957:CDS 45.0%
GAAAGAGGTTGCTGATGAAG+AGG - chr4.2:34563443-34563462 MS.gene90957:CDS 45.0%
GCAACAACCTCATGAGAACT+AGG + chr4.2:34562424-34562443 None:intergenic 45.0%
GCAACTTTGGACTTCTTAGC+AGG + chr4.2:34563540-34563559 None:intergenic 45.0%
GCGATGAGACTTATTTGAGG+AGG - chr4.2:34562956-34562975 MS.gene90957:CDS 45.0%
GGGATACTTATCCGAGGAAA+TGG - chr4.2:34563244-34563263 MS.gene90957:CDS 45.0%
GGTTGTGCTTATGACTACCA+AGG - chr4.2:34563122-34563141 MS.gene90957:CDS 45.0%
GTCATATGCAAGAGCTTAGG+AGG - chr4.2:34562845-34562864 MS.gene90957:CDS 45.0%
GTGAAATCTCAACAAGGTGC+TGG - chr4.2:34562550-34562569 MS.gene90957:CDS 45.0%
GTGGTCATATGCAAGAGCTT+AGG - chr4.2:34562842-34562861 MS.gene90957:CDS 45.0%
GTTCTCATGAGGTTGTTGCT+TGG - chr4.2:34562425-34562444 MS.gene90957:CDS 45.0%
TATCCGAGGAAATGGGGTTT+GGG - chr4.2:34563252-34563271 MS.gene90957:CDS 45.0%
TATTGACAGAGCAACGAGGT+TGG - chr4.2:34562528-34562547 MS.gene90957:CDS 45.0%
TCAAGAGGGTGGTTATGGAT+AGG - chr4.2:34563223-34563242 MS.gene90957:CDS 45.0%
TCTTGCCTTCAGAGAGAGAT+GGG + chr4.2:34562150-34562169 None:intergenic 45.0%
TGAAGATGGTTCTCCTGAAG+TGG - chr4.2:34563740-34563759 MS.gene90957:CDS 45.0%
TGATATTGAACCTGGTGAGG+AGG - chr4.2:34563101-34563120 MS.gene90957:CDS 45.0%
TGCATCTTCTGATGAGGAGA+AGG - chr4.2:34563680-34563699 MS.gene90957:CDS 45.0%
TGCTGTTCCTGATGTTGCTA+AGG - chr4.2:34562606-34562625 MS.gene90957:CDS 45.0%
TGGATAGGGATACTTATCCG+AGG - chr4.2:34563238-34563257 MS.gene90957:CDS 45.0%
TGTTGCTAAGATCAAGAGGG+TGG - chr4.2:34563212-34563231 MS.gene90957:CDS 45.0%
TTATCCGAGGAAATGGGGTT+TGG - chr4.2:34563251-34563270 MS.gene90957:CDS 45.0%
TTCTTGCCTTCAGAGAGAGA+TGG + chr4.2:34562151-34562170 None:intergenic 45.0%
! AGGGTTAGGTCTGGGATTAT+GGG - chr4.2:34562865-34562884 MS.gene90957:CDS 45.0%
! TCATGAGAACTAGGGTTAGC+AGG + chr4.2:34562415-34562434 None:intergenic 45.0%
! TGATGATTCCGGGTTTGCTT+AGG - chr4.2:34563070-34563089 MS.gene90957:CDS 45.0%
! TGCAGAGATCAGTAACGGAA+AGG - chr4.2:34563878-34563897 MS.gene90957:CDS 45.0%
! TGCTAACCCTAGTTCTCATG+AGG - chr4.2:34562414-34562433 MS.gene90957:CDS 45.0%
! TTTTGGATTTCGTGTGAGGC+CGG - chr4.2:34562769-34562788 MS.gene90957:CDS 45.0%
!! CAGTTTGAGGTGTCGATTGT+AGG + chr4.2:34562259-34562278 None:intergenic 45.0%
!! GGTGCTAAGTTGATGATTCC+GGG - chr4.2:34563060-34563079 MS.gene90957:CDS 45.0%
!! GGTTTAGTTCTTGGTGTTGG+TGG - chr4.2:34562823-34562842 MS.gene90957:CDS 45.0%
!! GTTAAGAAGGATGATGGGGA+AGG - chr4.2:34563474-34563493 MS.gene90957:CDS 45.0%
!!! TGCTGGTTTTGTGGTTGTTC+TGG + chr4.2:34562205-34562224 None:intergenic 45.0%
AAGGGCAATAGCTTCACCCT+TGG + chr4.2:34563142-34563161 None:intergenic 50.0%
AAGGGTGAAGCTATTGCCCT+TGG - chr4.2:34563141-34563160 MS.gene90957:CDS 50.0%
AGAGAGAGATGGGGACATGA+TGG + chr4.2:34562140-34562159 None:intergenic 50.0%
AGCTGCTGCATCTTCTGATG+AGG - chr4.2:34563674-34563693 MS.gene90957:CDS 50.0%
AGCTTAGGAGGGTTAGGTCT+GGG - chr4.2:34562857-34562876 MS.gene90957:CDS 50.0%
AGTGACCAGTACGGACATTG+AGG + chr4.2:34562309-34562328 None:intergenic 50.0%
ATAAGCACAACCTCCTCACC+AGG + chr4.2:34563114-34563133 None:intergenic 50.0%
ATGTCCCCATCTCTCTCTGA+AGG - chr4.2:34562142-34562161 MS.gene90957:CDS 50.0%
CAGGGAAGCTGGATAAGCAT+GGG - chr4.2:34563310-34563329 MS.gene90957:CDS 50.0%
CGAGCTACCTTAGCAACATC+AGG + chr4.2:34562616-34562635 None:intergenic 50.0%
CTTGCCTTCAGAGAGAGATG+GGG + chr4.2:34562149-34562168 None:intergenic 50.0%
GAAAGTAGATGAAGCGGCTG+TGG - chr4.2:34563593-34563612 MS.gene90957:CDS 50.0%
GAAATGGGGTTTGGGTCCTA+GGG - chr4.2:34563260-34563279 MS.gene90957:CDS 50.0%
GAGGAGGGTTGTTATGCCTT+TGG - chr4.2:34562972-34562991 MS.gene90957:CDS 50.0%
GAGGGTTGTTATGCCTTTGG+AGG - chr4.2:34562975-34562994 MS.gene90957:CDS 50.0%
GTACTCCTCAAGAGTGGATG+AGG - chr4.2:34563346-34563365 MS.gene90957:CDS 50.0%
GTGAGGCCGGTACTTATGTT+AGG - chr4.2:34562782-34562801 MS.gene90957:CDS 50.0%
TCAGCAATGGGTCGTTTGAG+AGG + chr4.2:34562358-34562377 None:intergenic 50.0%
TGCAAGAGCTTAGGAGGGTT+AGG - chr4.2:34562851-34562870 MS.gene90957:CDS 50.0%
TGCTGATGAAGAGGGTGAGA+AGG - chr4.2:34563452-34563471 MS.gene90957:CDS 50.0%
TGGACTTCTTAGCAGGAGCA+GGG + chr4.2:34563533-34563552 None:intergenic 50.0%
TTCTCAGACTTGTCCACCTC+AGG + chr4.2:34563819-34563838 None:intergenic 50.0%
TTGGACTTCTTAGCAGGAGC+AGG + chr4.2:34563534-34563553 None:intergenic 50.0%
! GAGGGTTAGGTCTGGGATTA+TGG - chr4.2:34562864-34562883 MS.gene90957:CDS 50.0%
! GTCTGGGATTATGGGTGAGA+AGG - chr4.2:34562873-34562892 MS.gene90957:CDS 50.0%
AGCCGCCATACCAGCAATCA+CGG + chr4.2:34563400-34563419 None:intergenic 55.0%
AGGTGAGTGACCAGCTGGAA+GGG + chr4.2:34562338-34562357 None:intergenic 55.0%
AGTAGATGAAGCGGCTGTGG+AGG - chr4.2:34563596-34563615 MS.gene90957:CDS 55.0%
GACCAGTACGGACATTGAGG+CGG + chr4.2:34562306-34562325 None:intergenic 55.0%
GAGCTTAGGAGGGTTAGGTC+TGG - chr4.2:34562856-34562875 MS.gene90957:CDS 55.0%
GCAGGGAAGCTGGATAAGCA+TGG - chr4.2:34563309-34563328 MS.gene90957:CDS 55.0%
GGAAATGGGGTTTGGGTCCT+AGG - chr4.2:34563259-34563278 MS.gene90957:CDS 55.0%
GGACCCAAACCCCATTTCCT+CGG + chr4.2:34563258-34563277 None:intergenic 55.0%
TTGAGAGGTGAGTGACCAGC+TGG + chr4.2:34562343-34562362 None:intergenic 55.0%
! GGGGGGTATAGTGACCAGTA+CGG + chr4.2:34562318-34562337 None:intergenic 55.0%
CACTATACCCCCCTTCCAGC+TGG - chr4.2:34562325-34562344 MS.gene90957:CDS 60.0%
CGCCGTGATTGCTGGTATGG+CGG - chr4.2:34563395-34563414 MS.gene90957:CDS 60.0%
CTGGTATGGCGGCTGCTACT+GGG - chr4.2:34563406-34563425 MS.gene90957:CDS 60.0%
GACCGCCTCAATGTCCGTAC+TGG - chr4.2:34562301-34562320 MS.gene90957:CDS 60.0%
GAGGTGAGTGACCAGCTGGA+AGG + chr4.2:34562339-34562358 None:intergenic 60.0%
GCTGATTGCTGCAGGGAAGC+TGG - chr4.2:34563299-34563318 MS.gene90957:CDS 60.0%
GGACGCCGTGATTGCTGGTA+TGG - chr4.2:34563392-34563411 MS.gene90957:CDS 60.0%
GGTGAGTGACCAGCTGGAAG+GGG + chr4.2:34562337-34562356 None:intergenic 60.0%
GTCGAGAAGACGGGTCACAG+TGG - chr4.2:34562466-34562485 MS.gene90957:CDS 60.0%
GTGAGTGACCAGCTGGAAGG+GGG + chr4.2:34562336-34562355 None:intergenic 60.0%
TGAGTGACCAGCTGGAAGGG+GGG + chr4.2:34562335-34562354 None:intergenic 60.0%
!! GAGTGAAGTCGGTTCGCCTG+AGG - chr4.2:34563800-34563819 MS.gene90957:CDS 60.0%
!! TGAAGTCGGTTCGCCTGAGG+TGG - chr4.2:34563803-34563822 MS.gene90957:CDS 60.0%
ATCACGGCGTCCCCACCAGT+AGG + chr4.2:34563384-34563403 None:intergenic 65.0%
GCTGGTATGGCGGCTGCTAC+TGG - chr4.2:34563405-34563424 MS.gene90957:CDS 65.0%
GGTGGGGACGCCGTGATTGC+TGG - chr4.2:34563387-34563406 MS.gene90957:CDS 70.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 34562130 34563971 34562130 ID=MS.gene90957
chr4.2 mRNA 34562130 34563971 34562130 ID=MS.gene90957.t1;Parent=MS.gene90957
chr4.2 exon 34562130 34563971 34562130 ID=MS.gene90957.t1.exon1;Parent=MS.gene90957.t1
chr4.2 CDS 34562130 34563971 34562130 ID=cds.MS.gene90957.t1;Parent=MS.gene90957.t1
Gene Sequence

>MS.gene90957

ATGTCTTCCATCATGTCCCCATCTCTCTCTGAAGGCAAGAAGAAGAAGAAAAACACCAACAAAGATACAGAACCAGAACAACCACAAAACCAGCAAGATTTCATGATCAAACCTGAAAAACTTACACCTACAATCGACACCTCAAACTGGCCCATTTTGTTGAAAAACTACGACCGCCTCAATGTCCGTACTGGTCACTATACCCCCCTTCCAGCTGGTCACTCACCTCTCAAACGACCCATTGCTGATTATCTGAAATATGGTGTTATCAATCTTGATAAGCCTGCTAACCCTAGTTCTCATGAGGTTGTTGCTTGGATCAAGCGTATTCTTCGTGTCGAGAAGACGGGTCACAGTGGTACTCTTGATCCTAAGGTTACTGGGAATTTGATTGTTTGTATTGACAGAGCAACGAGGTTGGTGAAATCTCAACAAGGTGCTGGAAAAGAGTATGTTTGTATTGCTAGGCTTCATTCTGCTGTTCCTGATGTTGCTAAGGTAGCTCGTGCTCTTGAAACTTTAACTGGTGCTGTTTTTCAAAGACCACCTTTGATTTCTGCTGTTAAGAGACAACTTAGGATTAGAACTATTTATGAAAGTAAAATGCTTGAATATGATGCTGAGAAACATTTAGTTGTGTTTTGGATTTCGTGTGAGGCCGGTACTTATGTTAGGACTATGTGTGTTCATTTGGGTTTAGTTCTTGGTGTTGGTGGTCATATGCAAGAGCTTAGGAGGGTTAGGTCTGGGATTATGGGTGAGAAGGATAATATGGTTACTATGCATGATGTTATGGATGCTCAGTATGTTTATGATAAGGAGAAGAGCGATGAGACTTATTTGAGGAGGGTTGTTATGCCTTTGGAGGTTCTTTTGACTAGTTATAAGAGATTGGTCGTTAAGGATTCAGCTGTGAATGCTATTTGTTATGGTGCTAAGTTGATGATTCCGGGTTTGCTTAGGTTTGAGAATGATATTGAACCTGGTGAGGAGGTTGTGCTTATGACTACCAAGGGTGAAGCTATTGCCCTTGGTATTGCTGAGATGACTACTGCTGTTATGGCTACTTGTGATCATGGTATTGTTGCTAAGATCAAGAGGGTGGTTATGGATAGGGATACTTATCCGAGGAAATGGGGTTTGGGTCCTAGGGCTTCTATGAAGAAGAAGCTGATTGCTGCAGGGAAGCTGGATAAGCATGGGAAGCCGAATGAAAGTACTCCTCAAGAGTGGATGAGGAATGTTGTTTTACCTACTGGTGGGGACGCCGTGATTGCTGGTATGGCGGCTGCTACTGGGACTGAAGATGTGAAGAAAGAGGTTGCTGATGAAGAGGGTGAGAAGGTTAAGAAGGATGATGGGGAAGGGCGTAAGAGAAAGAAACATGAATCTGTCGATAGCCCTGCTCCTGCTAAGAAGTCCAAAGTTGCTGAAGTTGATGGTGAAGAAAAAGTGAAGACCAAGAAAGTAGATGAAGCGGCTGTGGAGGTTGAAGATGAGAAGAAAGAAAAGAAGAAGAAAAAGAAGAAGGATAAAGAGAATGGAGCTGCTGCATCTTCTGATGAGGAGAAGGTTGAAAAGGAGAAGAAAAAGAAGCACAAGGAAAAGGGTGAAGATGGTTCTCCTGAAGTGGAAAAGTCTGAGAAGAAGAAAAAGAAGCACAAGGAAACGAGTGAAGTCGGTTCGCCTGAGGTGGACAAGTCTGAGAAGAAGAAAAAGAAGAAAGAGAAAGAAGCCAAAGATAATGCTGCAGAGATCAGTAACGGAAAGGATGAGAGCAATGCTGATAGAAGTGAGAAGAAGCACAAGAAAAAGAAAAACAAAGATGCCCAAGAAGAATAG

Protein sequence

>MS.gene90957.t1

MSSIMSPSLSEGKKKKKNTNKDTEPEQPQNQQDFMIKPEKLTPTIDTSNWPILLKNYDRLNVRTGHYTPLPAGHSPLKRPIADYLKYGVINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCIARLHSAVPDVAKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKMLEYDAEKHLVVFWISCEAGTYVRTMCVHLGLVLGVGGHMQELRRVRSGIMGEKDNMVTMHDVMDAQYVYDKEKSDETYLRRVVMPLEVLLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIEPGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIAAGKLDKHGKPNESTPQEWMRNVVLPTGGDAVIAGMAAATGTEDVKKEVADEEGEKVKKDDGEGRKRKKHESVDSPAPAKKSKVAEVDGEEKVKTKKVDEAAVEVEDEKKEKKKKKKKDKENGAAASSDEEKVEKEKKKKHKEKGEDGSPEVEKSEKKKKKHKETSEVGSPEVDKSEKKKKKKEKEAKDNAAEISNGKDESNADRSEKKHKKKKNKDAQEE