Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003501.t1 | XP_013456513.1 | 96 | 449 | 18 | 0 | 1 | 449 | 1 | 449 | 1.80E-242 | 848.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003501.t1 | Q9LD90 | 82.8 | 437 | 68 | 3 | 9 | 445 | 6 | 435 | 6.0e-210 | 731.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003501.t1 | A0A072ULA4 | 96.0 | 449 | 18 | 0 | 1 | 449 | 1 | 449 | 1.3e-242 | 848.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003501.t1 | MTR_4g074160 | 97.553 | 613 | 14 | 1 | 1 | 613 | 1 | 612 | 0.0 | 1211 |
| MS.gene003501.t1 | MTR_6g004400 | 30.348 | 201 | 106 | 5 | 80 | 246 | 346 | 546 | 4.97e-23 | 103 |
| MS.gene003501.t1 | MTR_6g004400 | 40.244 | 82 | 49 | 0 | 80 | 161 | 346 | 427 | 8.83e-12 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003501.t1 | AT3G57150 | 80.171 | 469 | 77 | 6 | 9 | 475 | 6 | 460 | 0.0 | 735 |
| MS.gene003501.t1 | AT5G14460 | 31.771 | 192 | 97 | 5 | 89 | 246 | 323 | 514 | 2.87e-23 | 104 |
Find 157 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGGGTTAGGTCTGGGATTA+TGG | 0.176925 | 4.3:-32898098 | MS.gene003501:CDS |
| AGCCGCTTCATCTACTTTCT+TGG | 0.219661 | 4.3:+32897373 | None:intergenic |
| GTTCATTTGGGTTTAGTTCT+TGG | 0.230459 | 4.3:-32898148 | MS.gene003501:CDS |
| AGAAACATTTAGTTGTGTTT+TGG | 0.271760 | 4.3:-32898210 | MS.gene003501:CDS |
| TGGTGCTAAGTTGATGATTC+CGG | 0.283073 | 4.3:-32897903 | MS.gene003501:CDS |
| GATCTCTGCAGCATTATCTT+TGG | 0.294718 | 4.3:+32897097 | None:intergenic |
| GCTGGTATGGCGGCTGCTAC+TGG | 0.295017 | 4.3:-32897557 | MS.gene003501:CDS |
| TAGGACTATGTGTGTTCATT+TGG | 0.300884 | 4.3:-32898161 | MS.gene003501:CDS |
| ATGTCTTCACCTATTCTTCT+TGG | 0.341008 | 4.3:+32897003 | None:intergenic |
| GAGGAGGGTTGTTATGCCTT+TGG | 0.341470 | 4.3:-32897990 | MS.gene003501:CDS |
| ACCATCAACTTCAGCAACTT+TGG | 0.346981 | 4.3:+32897412 | None:intergenic |
| ACTCTTGATCCTAAGGTTAC+TGG | 0.353369 | 4.3:-32898472 | MS.gene003501:CDS |
| CGTGCTCTTGAAACTTTAAC+TGG | 0.360375 | 4.3:-32898328 | MS.gene003501:CDS |
| TATGGGTGAGAAGGATAATA+TGG | 0.361091 | 4.3:-32898080 | MS.gene003501:CDS |
| GGTGCTAAGTTGATGATTCC+GGG | 0.361757 | 4.3:-32897902 | MS.gene003501:CDS |
| CAGTTTGAGGTGTCGATTGT+AGG | 0.363827 | 4.3:+32898706 | None:intergenic |
| TTTGACTAGTTATAAGAGAT+TGG | 0.369510 | 4.3:-32897960 | MS.gene003501:CDS |
| GGGATACTTATCCGAGGAAA+TGG | 0.370351 | 4.3:-32897718 | MS.gene003501:CDS |
| TTATAAGAGATTGGTCCTTA+AGG | 0.373054 | 4.3:-32897951 | MS.gene003501:CDS |
| TGTCTTCACCTATTCTTCTT+GGG | 0.379511 | 4.3:+32897004 | None:intergenic |
| ATTGCTGATTATCTGAAATA+TGG | 0.384973 | 4.3:-32898592 | MS.gene003501:CDS |
| AGGACTATGTGTGTTCATTT+GGG | 0.389668 | 4.3:-32898160 | MS.gene003501:CDS |
| GGTGGGGACGCCGTGATTGC+TGG | 0.392518 | 4.3:-32897575 | MS.gene003501:CDS |
| CAAAGATGCCCAAGAAGAAT+AGG | 0.398166 | 4.3:-32897012 | None:intergenic |
| GGTTACTATGCATGATGTTA+TGG | 0.406717 | 4.3:-32898059 | MS.gene003501:CDS |
| TTCTCAGACTTGTCCACCTC+AGG | 0.408947 | 4.3:+32897146 | None:intergenic |
| TTATCCGAGGAAATGGGGTT+TGG | 0.416217 | 4.3:-32897711 | MS.gene003501:CDS |
| CAACAAAATGGGCCAGTTTG+AGG | 0.417673 | 4.3:+32898693 | None:intergenic |
| CTGGTATGGCGGCTGCTACT+GGG | 0.423425 | 4.3:-32897556 | MS.gene003501:CDS |
| TAAGATCAAGAGGGTGGTTA+TGG | 0.424039 | 4.3:-32897744 | MS.gene003501:CDS |
| CATTCACAGCTGAATCCTTA+AGG | 0.426146 | 4.3:+32897936 | None:intergenic |
| TTGGACTTCTTAGCAGGAGC+AGG | 0.428365 | 4.3:+32897431 | None:intergenic |
| AGGGTTAGGTCTGGGATTAT+GGG | 0.428508 | 4.3:-32898097 | MS.gene003501:CDS |
| TGATGATTCCGGGTTTGCTT+AGG | 0.429928 | 4.3:-32897892 | MS.gene003501:CDS |
| GCTGATTGCTGCAGGGAAGC+TGG | 0.431749 | 4.3:-32897663 | MS.gene003501:CDS |
| TCAAGAGGGTGGTTATGGAT+AGG | 0.433226 | 4.3:-32897739 | MS.gene003501:CDS |
| GGATACTTATCCGAGGAAAT+GGG | 0.435995 | 4.3:-32897717 | MS.gene003501:CDS |
| AAGAAGAAGGATAAAGAGAA+TGG | 0.436116 | 4.3:-32897311 | MS.gene003501:CDS |
| GCTGTGAATGCTATTTGTTA+TGG | 0.437584 | 4.3:-32897923 | MS.gene003501:CDS |
| TGAGATGACTACTGCTGTTA+TGG | 0.438520 | 4.3:-32897792 | MS.gene003501:CDS |
| TATCCGAGGAAATGGGGTTT+GGG | 0.439560 | 4.3:-32897710 | MS.gene003501:CDS |
| TCTTGAGGAGTACTTTCATT+CGG | 0.440773 | 4.3:+32897626 | None:intergenic |
| AGAGGGTGAGAAGGTTAAGA+AGG | 0.448672 | 4.3:-32897501 | MS.gene003501:CDS |
| GTTTGATCATGAAATCTTGT+TGG | 0.449019 | 4.3:+32898743 | None:intergenic |
| AGCTTAGGAGGGTTAGGTCT+GGG | 0.450353 | 4.3:-32898105 | MS.gene003501:CDS |
| GGAAATGGGGTTTGGGACCT+AGG | 0.450905 | 4.3:-32897703 | MS.gene003501:CDS |
| GTTCTCATGAAGTTGTTGCT+TGG | 0.453320 | 4.3:-32898537 | MS.gene003501:CDS |
| CAAGAGGGTGGTTATGGATA+GGG | 0.456296 | 4.3:-32897738 | MS.gene003501:CDS |
| TCTTGCCTTCAGAGAGAGAT+GGG | 0.460200 | 4.3:+32898815 | None:intergenic |
| GTGAGGCCGGTACTTATGTT+AGG | 0.460583 | 4.3:-32898180 | MS.gene003501:CDS |
| GCAACTTTGGACTTCTTAGC+AGG | 0.461403 | 4.3:+32897425 | None:intergenic |
| AAGAAGAAGCTGATTGCTGC+AGG | 0.463700 | 4.3:-32897671 | MS.gene003501:CDS |
| GGACGCCGTGATTGCTGGTA+TGG | 0.464126 | 4.3:-32897570 | MS.gene003501:CDS |
| CTCTTGATCCTAAGGTTACT+GGG | 0.467083 | 4.3:-32898471 | MS.gene003501:CDS |
| CTACAATCGACACCTCAAAC+TGG | 0.467674 | 4.3:-32898705 | MS.gene003501:CDS |
| TTGGGTTTAGTTCTTGGTGT+TGG | 0.469171 | 4.3:-32898142 | MS.gene003501:CDS |
| TTCTTGCCTTCAGAGAGAGA+TGG | 0.474253 | 4.3:+32898814 | None:intergenic |
| CACTATACCCCTCTTCCAGC+TGG | 0.475250 | 4.3:-32898637 | MS.gene003501:CDS |
| TCATGAGAACTAGGGTTAGC+AGG | 0.475546 | 4.3:+32898550 | None:intergenic |
| TGCTGTTCCTGATGTTGCTA+AGG | 0.476360 | 4.3:-32898356 | MS.gene003501:CDS |
| TCCAAAGTTGCTGAAGTTGA+TGG | 0.479321 | 4.3:-32897413 | MS.gene003501:CDS |
| GAGGGTTGTTATGCCTTTGG+AGG | 0.479919 | 4.3:-32897987 | MS.gene003501:CDS |
| GGTTTAGTTCTTGGTGTTGG+TGG | 0.480018 | 4.3:-32898139 | MS.gene003501:CDS |
| TGCAAGAGCTTAGGAGGGTT+AGG | 0.482197 | 4.3:-32898111 | MS.gene003501:CDS |
| GTCTGGGATTATGGGTGAGA+AGG | 0.485087 | 4.3:-32898089 | MS.gene003501:CDS |
| TGCTCAGTATGTTTATGATA+AGG | 0.488747 | 4.3:-32898035 | MS.gene003501:CDS |
| GAGCTTAGGAGGGTTAGGTC+TGG | 0.490050 | 4.3:-32898106 | MS.gene003501:CDS |
| TGATGAGGAGAAGGTTGAAA+AGG | 0.490781 | 4.3:-32897273 | MS.gene003501:CDS |
| AAGAGTATGTTTGTATTGCT+AGG | 0.493913 | 4.3:-32898387 | MS.gene003501:CDS |
| GAGAAGGTTAAGAAGGATGA+TGG | 0.494500 | 4.3:-32897494 | MS.gene003501:CDS |
| AGAAGGTTAAGAAGGATGAT+GGG | 0.497001 | 4.3:-32897493 | MS.gene003501:CDS |
| GCAACAACTTCATGAGAACT+AGG | 0.500392 | 4.3:+32898541 | None:intergenic |
| CACAAGGAAAAGGGTGAAGA+TGG | 0.502250 | 4.3:-32897236 | MS.gene003501:CDS |
| ATCAAATTCCCAGTAACCTT+AGG | 0.503949 | 4.3:+32898463 | None:intergenic |
| GTGAAGTCTCAACAAGGTGC+TGG | 0.505447 | 4.3:-32898412 | MS.gene003501:CDS |
| CGAGCTACCTTAGCAACATC+AGG | 0.506820 | 4.3:+32898349 | None:intergenic |
| GTCATATGCAAGAGCTTAGG+AGG | 0.508607 | 4.3:-32898117 | MS.gene003501:CDS |
| GAAATGGGGTTTGGGACCTA+GGG | 0.508639 | 4.3:-32897702 | MS.gene003501:CDS |
| TATTCTTCGTGTCGAGAAGA+CGG | 0.508925 | 4.3:-32898506 | MS.gene003501:CDS |
| GAAAGTAGATGAAGCGGCTG+TGG | 0.509335 | 4.3:-32897369 | MS.gene003501:CDS |
| GGTGAGTGACCAGCTGGAAG+AGG | 0.510001 | 4.3:+32898628 | None:intergenic |
| AAAGAGGTTGCTGATGAAGA+GGG | 0.510792 | 4.3:-32897518 | MS.gene003501:CDS |
| TGCTGATGAAGAGGGTGAGA+AGG | 0.511607 | 4.3:-32897510 | MS.gene003501:CDS |
| TAGCGGTACTCTTGATCCTA+AGG | 0.513861 | 4.3:-32898479 | MS.gene003501:CDS |
| GTGAGTGACCAGCTGGAAGA+GGG | 0.515407 | 4.3:+32898629 | None:intergenic |
| TTGAGAGGTGAGTGACCAGC+TGG | 0.515974 | 4.3:+32898622 | None:intergenic |
| ATTCTTCGTGTCGAGAAGAC+GGG | 0.516109 | 4.3:-32898505 | MS.gene003501:CDS |
| GTTATGGCTACTTGTGATCA+TGG | 0.518206 | 4.3:-32897776 | MS.gene003501:CDS |
| AGAGCGATGAGACTTATTTG+AGG | 0.518362 | 4.3:-32898009 | MS.gene003501:CDS |
| GTGGTCATATGCAAGAGCTT+AGG | 0.520527 | 4.3:-32898120 | MS.gene003501:CDS |
| AGAGAGAGATGGGGACATGA+TGG | 0.524072 | 4.3:+32898825 | None:intergenic |
| GTACTCCTCAAGAGTGGATG+AGG | 0.525760 | 4.3:-32897616 | MS.gene003501:CDS |
| CGATGAGACTTATTTGAGGA+GGG | 0.530709 | 4.3:-32898005 | MS.gene003501:CDS |
| GACCGCCTCAATGTCCGTAC+TGG | 0.533848 | 4.3:-32898661 | MS.gene003501:CDS |
| TATTTCAGATAATCAGCAAT+GGG | 0.541396 | 4.3:+32898595 | None:intergenic |
| TGAAGTCGGTTCGCCTGAGG+TGG | 0.545768 | 4.3:-32897159 | MS.gene003501:CDS |
| TGCATCTTCTGATGAGGAGA+AGG | 0.555918 | 4.3:-32897282 | MS.gene003501:CDS |
| AGCCGCCATACCAGCAATCA+CGG | 0.555963 | 4.3:+32897565 | None:intergenic |
| TTCTCAAACCTAAGCAAACC+CGG | 0.556341 | 4.3:+32897884 | None:intergenic |
| TGAAGATGGTTCTCCTGAAG+TGG | 0.558835 | 4.3:-32897222 | MS.gene003501:CDS |
| AAGGGTGAAGCTATTGCCCT+TGG | 0.558857 | 4.3:-32897821 | MS.gene003501:CDS |
| TTAAGAAGGATGATGGGGAA+GGG | 0.559638 | 4.3:-32897487 | MS.gene003501:CDS |
| GTTAAGAAGGATGATGGGGA+AGG | 0.562363 | 4.3:-32897488 | MS.gene003501:CDS |
| GACCAAGAAAGTAGATGAAG+CGG | 0.563615 | 4.3:-32897375 | MS.gene003501:CDS |
| GGTCCCAAACCCCATTTCCT+CGG | 0.564176 | 4.3:+32897707 | None:intergenic |
| CTGCTGTTAAGAGACAACTT+AGG | 0.565713 | 4.3:-32898276 | MS.gene003501:CDS |
| ATGTCCCCATCTCTCTCTGA+AGG | 0.569959 | 4.3:-32898820 | MS.gene003501:CDS |
| AGTAGATGAAGCGGCTGTGG+AGG | 0.570309 | 4.3:-32897366 | MS.gene003501:CDS |
| TGGACTTCTTAGCAGGAGCA+GGG | 0.572350 | 4.3:+32897432 | None:intergenic |
| GCAGGGAAGCTGGATAAGCA+TGG | 0.572801 | 4.3:-32897653 | MS.gene003501:CDS |
| TTCTTCTTCATAGAAGCCCT+AGG | 0.575773 | 4.3:+32897686 | None:intergenic |
| CGCCGTGATTGCTGGTATGG+CGG | 0.577954 | 4.3:-32897567 | MS.gene003501:CDS |
| ATAAGCACAACCTCCTCACC+AGG | 0.579419 | 4.3:+32897851 | None:intergenic |
| CACAAGGAAACGAGTGAAGT+CGG | 0.580195 | 4.3:-32897173 | MS.gene003501:CDS |
| GCGATGAGACTTATTTGAGG+AGG | 0.584233 | 4.3:-32898006 | MS.gene003501:CDS |
| AAGGGCAATAGCTTCACCCT+TGG | 0.584541 | 4.3:+32897823 | None:intergenic |
| CAGGGAAGCTGGATAAGCAT+GGG | 0.585096 | 4.3:-32897652 | MS.gene003501:CDS |
| TCAGCAATGGGTCGTTTGAG+AGG | 0.590490 | 4.3:+32898607 | None:intergenic |
| GAAAGAGGTTGCTGATGAAG+AGG | 0.591372 | 4.3:-32897519 | MS.gene003501:CDS |
| CATAGTCCTAACATAAGTAC+CGG | 0.600318 | 4.3:+32898174 | None:intergenic |
| ACATTCCTCATCCACTCTTG+AGG | 0.608152 | 4.3:+32897611 | None:intergenic |
| GAAGGTTAAGAAGGATGATG+GGG | 0.610370 | 4.3:-32897492 | MS.gene003501:CDS |
| CAACAACTTCATGAGAACTA+GGG | 0.610401 | 4.3:+32898542 | None:intergenic |
| CTAGTCAAAAGAACCTCCAA+AGG | 0.615878 | 4.3:+32897974 | None:intergenic |
| TATTGACAGAGCAACGAGGT+TGG | 0.616767 | 4.3:-32898434 | MS.gene003501:CDS |
| GATACTTATCCGAGGAAATG+GGG | 0.621162 | 4.3:-32897716 | MS.gene003501:CDS |
| AGTGACCAGTACGGACATTG+AGG | 0.623451 | 4.3:+32898656 | None:intergenic |
| CTCTTAACAGCAGAAATCAA+AGG | 0.625059 | 4.3:+32898286 | None:intergenic |
| ATATTTCAGATAATCAGCAA+TGG | 0.627850 | 4.3:+32898594 | None:intergenic |
| TGCAGAGATCAGTAACGGAA+AGG | 0.627993 | 4.3:-32897084 | MS.gene003501:CDS |
| ATGAAAGTACTCCTCAAGAG+TGG | 0.631391 | 4.3:-32897622 | MS.gene003501:CDS |
| GTATTGTTGCTAAGATCAAG+AGG | 0.631960 | 4.3:-32897754 | MS.gene003501:CDS |
| GAGTGAAGTCGGTTCGCCTG+AGG | 0.633165 | 4.3:-32897162 | MS.gene003501:CDS |
| AATGCTGCAGAGATCAGTAA+CGG | 0.637087 | 4.3:-32897089 | MS.gene003501:CDS |
| TAGTCATCTCAGCAATACCA+AGG | 0.640655 | 4.3:+32897804 | None:intergenic |
| AGCTGCTGCATCTTCTGATG+AGG | 0.641491 | 4.3:-32897288 | MS.gene003501:CDS |
| GACTGAAGATGTGAAGAAAG+AGG | 0.647185 | 4.3:-32897534 | MS.gene003501:CDS |
| TTTGAGAATGATATTGAACC+TGG | 0.653930 | 4.3:-32897869 | MS.gene003501:CDS |
| TTAACAGCAGAAATCAAAGG+TGG | 0.656440 | 4.3:+32898289 | None:intergenic |
| AGAAGAAGCTGATTGCTGCA+GGG | 0.658320 | 4.3:-32897670 | MS.gene003501:CDS |
| GGTTGTGCTTATGACTACCA+AGG | 0.659102 | 4.3:-32897840 | MS.gene003501:CDS |
| TGTTGCTAAGATCAAGAGGG+TGG | 0.661471 | 4.3:-32897750 | MS.gene003501:CDS |
| TGAGTGACCAGCTGGAAGAG+GGG | 0.666816 | 4.3:+32898630 | None:intergenic |
| CTTGCCTTCAGAGAGAGATG+GGG | 0.670821 | 4.3:+32898816 | None:intergenic |
| GAGGGGTATAGTGACCAGTA+CGG | 0.673581 | 4.3:+32898647 | None:intergenic |
| GAATGATATTGAACCTGGTG+AGG | 0.674019 | 4.3:-32897864 | MS.gene003501:CDS |
| ATCACGGCGTCCCCACCAGT+AGG | 0.679551 | 4.3:+32897581 | None:intergenic |
| AGTCATCTCAGCAATACCAA+GGG | 0.685774 | 4.3:+32897805 | None:intergenic |
| TGATATTGAACCTGGTGAGG+AGG | 0.686276 | 4.3:-32897861 | MS.gene003501:CDS |
| GTTGTGCTTATGACTACCAA+GGG | 0.691718 | 4.3:-32897839 | MS.gene003501:CDS |
| GACCAGTACGGACATTGAGG+CGG | 0.696590 | 4.3:+32898659 | None:intergenic |
| TATTGTTGCTAAGATCAAGA+GGG | 0.700862 | 4.3:-32897753 | MS.gene003501:CDS |
| TGGATAGGGATACTTATCCG+AGG | 0.711704 | 4.3:-32897724 | MS.gene003501:CDS |
| AGGTTGGTGAAGTCTCAACA+AGG | 0.713738 | 4.3:-32898418 | MS.gene003501:CDS |
| GTCGAGAAGACGGGTCATAG+CGG | 0.724258 | 4.3:-32898496 | MS.gene003501:CDS |
| TCATATGCAAGAGCTTAGGA+GGG | 0.728673 | 4.3:-32898116 | MS.gene003501:CDS |
| TTTGTATTGACAGAGCAACG+AGG | 0.787641 | 4.3:-32898438 | MS.gene003501:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AAAGAAGAAGAAAAAGAAGA+AGG | - | chr4.3:32898521-32898540 | MS.gene003501:CDS | 25.0% |
| ! | ATATTTCAGATAATCAGCAA+TGG | + | chr4.3:32897254-32897273 | None:intergenic | 25.0% |
| ! | TATTTCAGATAATCAGCAAT+GGG | + | chr4.3:32897253-32897272 | None:intergenic | 25.0% |
| !! | AGAAACATTTAGTTGTGTTT+TGG | - | chr4.3:32897635-32897654 | MS.gene003501:CDS | 25.0% |
| !! | ATTGCTGATTATCTGAAATA+TGG | - | chr4.3:32897253-32897272 | MS.gene003501:CDS | 25.0% |
| !! | TTTGACTAGTTATAAGAGAT+TGG | - | chr4.3:32897885-32897904 | MS.gene003501:CDS | 25.0% |
| !!! | TCGTAGTTTTTCAACAAAAT+GGG | + | chr4.3:32897166-32897185 | None:intergenic | 25.0% |
| AAGAAGAAGGATAAAGAGAA+TGG | - | chr4.3:32898534-32898553 | MS.gene003501:CDS | 30.0% | |
| GTTTGATCATGAAATCTTGT+TGG | + | chr4.3:32897105-32897124 | None:intergenic | 30.0% | |
| TATTGTTGCTAAGATCAAGA+GGG | - | chr4.3:32898092-32898111 | MS.gene003501:CDS | 30.0% | |
| TGCTCAGTATGTTTATGATA+AGG | - | chr4.3:32897810-32897829 | MS.gene003501:CDS | 30.0% | |
| TTTGAGAATGATATTGAACC+TGG | - | chr4.3:32897976-32897995 | MS.gene003501:CDS | 30.0% | |
| ! | AAAAAGAAGCACAAGGAAAA+GGG | - | chr4.3:32898600-32898619 | MS.gene003501:CDS | 30.0% |
| ! | AAGAGTATGTTTGTATTGCT+AGG | - | chr4.3:32897458-32897477 | MS.gene003501:CDS | 30.0% |
| ! | TTATAAGAGATTGGTCCTTA+AGG | - | chr4.3:32897894-32897913 | MS.gene003501:CDS | 30.0% |
| !! | GTCGTAGTTTTTCAACAAAA+TGG | + | chr4.3:32897167-32897186 | None:intergenic | 30.0% |
| !!! | ATCTGGTTTTGTATGTTTGT+CGG | + | chr4.3:32897071-32897090 | None:intergenic | 30.0% |
| !!! | ATGAAATCTTGTTGGTTTTG+TGG | + | chr4.3:32897097-32897116 | None:intergenic | 30.0% |
| !!! | ATTGTAGGTGTTAGTTTTTC+AGG | + | chr4.3:32897127-32897146 | None:intergenic | 30.0% |
| AGAAGGTTAAGAAGGATGAT+GGG | - | chr4.3:32898352-32898371 | MS.gene003501:CDS | 35.0% | |
| AGGACTATGTGTGTTCATTT+GGG | - | chr4.3:32897685-32897704 | MS.gene003501:CDS | 35.0% | |
| ATCAAATTCCCAGTAACCTT+AGG | + | chr4.3:32897385-32897404 | None:intergenic | 35.0% | |
| CAACAACTTCATGAGAACTA+GGG | + | chr4.3:32897306-32897325 | None:intergenic | 35.0% | |
| CATAGTCCTAACATAAGTAC+CGG | + | chr4.3:32897674-32897693 | None:intergenic | 35.0% | |
| CTCTTAACAGCAGAAATCAA+AGG | + | chr4.3:32897562-32897581 | None:intergenic | 35.0% | |
| GGTTACTATGCATGATGTTA+TGG | - | chr4.3:32897786-32897805 | MS.gene003501:CDS | 35.0% | |
| GTATTGTTGCTAAGATCAAG+AGG | - | chr4.3:32898091-32898110 | MS.gene003501:CDS | 35.0% | |
| TAGGACTATGTGTGTTCATT+TGG | - | chr4.3:32897684-32897703 | MS.gene003501:CDS | 35.0% | |
| TATGGGTGAGAAGGATAATA+TGG | - | chr4.3:32897765-32897784 | MS.gene003501:CDS | 35.0% | |
| TTAACAGCAGAAATCAAAGG+TGG | + | chr4.3:32897559-32897578 | None:intergenic | 35.0% | |
| ! | GAAAAAGAAGCACAAGGAAA+AGG | - | chr4.3:32898599-32898618 | MS.gene003501:CDS | 35.0% |
| ! | GAAGAAGAAAAAGAAGCACA+AGG | - | chr4.3:32898656-32898675 | MS.gene003501:CDS | 35.0% |
| ! | GCTGTGAATGCTATTTGTTA+TGG | - | chr4.3:32897922-32897941 | MS.gene003501:CDS | 35.0% |
| !! | GTTCATTTGGGTTTAGTTCT+TGG | - | chr4.3:32897697-32897716 | MS.gene003501:CDS | 35.0% |
| !! | TCTTGAGGAGTACTTTCATT+CGG | + | chr4.3:32898222-32898241 | None:intergenic | 35.0% |
| !!! | AATGTTGTTTTACCTACTGG+TGG | - | chr4.3:32898252-32898271 | MS.gene003501:CDS | 35.0% |
| !!! | AGGAATGTTGTTTTACCTAC+TGG | - | chr4.3:32898249-32898268 | MS.gene003501:CDS | 35.0% |
| !!! | ATGTTGTTTTACCTACTGGT+GGG | - | chr4.3:32898253-32898272 | MS.gene003501:CDS | 35.0% |
| AAAGAGGTTGCTGATGAAGA+GGG | - | chr4.3:32898327-32898346 | MS.gene003501:CDS | 40.0% | |
| AATGCTGCAGAGATCAGTAA+CGG | - | chr4.3:32898756-32898775 | MS.gene003501:CDS | 40.0% | |
| ACCATCAACTTCAGCAACTT+TGG | + | chr4.3:32898436-32898455 | None:intergenic | 40.0% | |
| ACTCTTGATCCTAAGGTTAC+TGG | - | chr4.3:32897373-32897392 | MS.gene003501:CDS | 40.0% | |
| AGAGCGATGAGACTTATTTG+AGG | - | chr4.3:32897836-32897855 | MS.gene003501:CDS | 40.0% | |
| AGTCATCTCAGCAATACCAA+GGG | + | chr4.3:32898043-32898062 | None:intergenic | 40.0% | |
| CATTCACAGCTGAATCCTTA+AGG | + | chr4.3:32897912-32897931 | None:intergenic | 40.0% | |
| CGATGAGACTTATTTGAGGA+GGG | - | chr4.3:32897840-32897859 | MS.gene003501:CDS | 40.0% | |
| CGTGCTCTTGAAACTTTAAC+TGG | - | chr4.3:32897517-32897536 | MS.gene003501:CDS | 40.0% | |
| CTAGTCAAAAGAACCTCCAA+AGG | + | chr4.3:32897874-32897893 | None:intergenic | 40.0% | |
| CTCTTGATCCTAAGGTTACT+GGG | - | chr4.3:32897374-32897393 | MS.gene003501:CDS | 40.0% | |
| CTGCTGTTAAGAGACAACTT+AGG | - | chr4.3:32897569-32897588 | MS.gene003501:CDS | 40.0% | |
| GAAGGTTAAGAAGGATGATG+GGG | - | chr4.3:32898353-32898372 | MS.gene003501:CDS | 40.0% | |
| GAATGATATTGAACCTGGTG+AGG | - | chr4.3:32897981-32898000 | MS.gene003501:CDS | 40.0% | |
| GACCAAGAAAGTAGATGAAG+CGG | - | chr4.3:32898470-32898489 | MS.gene003501:CDS | 40.0% | |
| GACTGAAGATGTGAAGAAAG+AGG | - | chr4.3:32898311-32898330 | MS.gene003501:CDS | 40.0% | |
| GAGAAGGTTAAGAAGGATGA+TGG | - | chr4.3:32898351-32898370 | MS.gene003501:CDS | 40.0% | |
| GATACTTATCCGAGGAAATG+GGG | - | chr4.3:32898129-32898148 | MS.gene003501:CDS | 40.0% | |
| GATCTCTGCAGCATTATCTT+TGG | + | chr4.3:32898751-32898770 | None:intergenic | 40.0% | |
| GCAACAACTTCATGAGAACT+AGG | + | chr4.3:32897307-32897326 | None:intergenic | 40.0% | |
| GGATACTTATCCGAGGAAAT+GGG | - | chr4.3:32898128-32898147 | MS.gene003501:CDS | 40.0% | |
| GTTATGGCTACTTGTGATCA+TGG | - | chr4.3:32898069-32898088 | MS.gene003501:CDS | 40.0% | |
| GTTCTCATGAAGTTGTTGCT+TGG | - | chr4.3:32897308-32897327 | MS.gene003501:CDS | 40.0% | |
| GTTGTGCTTATGACTACCAA+GGG | - | chr4.3:32898006-32898025 | MS.gene003501:CDS | 40.0% | |
| TAAGATCAAGAGGGTGGTTA+TGG | - | chr4.3:32898101-32898120 | MS.gene003501:CDS | 40.0% | |
| TAGTCATCTCAGCAATACCA+AGG | + | chr4.3:32898044-32898063 | None:intergenic | 40.0% | |
| TATTCTTCGTGTCGAGAAGA+CGG | - | chr4.3:32897339-32897358 | MS.gene003501:CDS | 40.0% | |
| TCATATGCAAGAGCTTAGGA+GGG | - | chr4.3:32897729-32897748 | MS.gene003501:CDS | 40.0% | |
| TCCAAAGTTGCTGAAGTTGA+TGG | - | chr4.3:32898432-32898451 | MS.gene003501:CDS | 40.0% | |
| TGAGATGACTACTGCTGTTA+TGG | - | chr4.3:32898053-32898072 | MS.gene003501:CDS | 40.0% | |
| TGATGAGGAGAAGGTTGAAA+AGG | - | chr4.3:32898572-32898591 | MS.gene003501:CDS | 40.0% | |
| TTCTCAAACCTAAGCAAACC+CGG | + | chr4.3:32897964-32897983 | None:intergenic | 40.0% | |
| TTCTTCTTCATAGAAGCCCT+AGG | + | chr4.3:32898162-32898181 | None:intergenic | 40.0% | |
| ! | GGAGAAGAAAAAGAAGCACA+AGG | - | chr4.3:32898593-32898612 | MS.gene003501:CDS | 40.0% |
| ! | TTCTCAGACTTTTCCACTTC+AGG | + | chr4.3:32898639-32898658 | None:intergenic | 40.0% |
| ! | TTTGTATTGACAGAGCAACG+AGG | - | chr4.3:32897407-32897426 | MS.gene003501:CDS | 40.0% |
| !! | ATGAAAGTACTCCTCAAGAG+TGG | - | chr4.3:32898223-32898242 | MS.gene003501:CDS | 40.0% |
| !! | TGGTGCTAAGTTGATGATTC+CGG | - | chr4.3:32897942-32897961 | MS.gene003501:CDS | 40.0% |
| !! | TGTGTTTTGGATTTCGTGTG+AGG | - | chr4.3:32897648-32897667 | MS.gene003501:CDS | 40.0% |
| !! | TTAAGAAGGATGATGGGGAA+GGG | - | chr4.3:32898358-32898377 | MS.gene003501:CDS | 40.0% |
| !! | TTGGGTTTAGTTCTTGGTGT+TGG | - | chr4.3:32897703-32897722 | MS.gene003501:CDS | 40.0% |
| !!! | TGTTGGTTTTGTGGTTCATC+TGG | + | chr4.3:32897088-32897107 | None:intergenic | 40.0% |
| !!! | TGTTGTTTTACCTACTGGTG+GGG | - | chr4.3:32898254-32898273 | MS.gene003501:CDS | 40.0% |
| AAGAAGAAGCTGATTGCTGC+AGG | - | chr4.3:32898174-32898193 | MS.gene003501:CDS | 45.0% | |
| ACATTCCTCATCCACTCTTG+AGG | + | chr4.3:32898237-32898256 | None:intergenic | 45.0% | |
| AGAAGAAGCTGATTGCTGCA+GGG | - | chr4.3:32898175-32898194 | MS.gene003501:CDS | 45.0% | |
| AGAGGGTGAGAAGGTTAAGA+AGG | - | chr4.3:32898344-32898363 | MS.gene003501:CDS | 45.0% | |
| AGCCGCTTCATCTACTTTCT+TGG | + | chr4.3:32898475-32898494 | None:intergenic | 45.0% | |
| ATTCTTCGTGTCGAGAAGAC+GGG | - | chr4.3:32897340-32897359 | MS.gene003501:CDS | 45.0% | |
| CAACAAAATGGGCCAGTTTG+AGG | + | chr4.3:32897155-32897174 | None:intergenic | 45.0% | |
| CAAGAGGGTGGTTATGGATA+GGG | - | chr4.3:32898107-32898126 | MS.gene003501:CDS | 45.0% | |
| CACAAGGAAAAGGGTGAAGA+TGG | - | chr4.3:32898609-32898628 | MS.gene003501:CDS | 45.0% | |
| CACAAGGAAACGAGTGAAGT+CGG | - | chr4.3:32898672-32898691 | MS.gene003501:CDS | 45.0% | |
| CTACAATCGACACCTCAAAC+TGG | - | chr4.3:32897140-32897159 | MS.gene003501:CDS | 45.0% | |
| GAAAGAGGTTGCTGATGAAG+AGG | - | chr4.3:32898326-32898345 | MS.gene003501:CDS | 45.0% | |
| GCAACTTTGGACTTCTTAGC+AGG | + | chr4.3:32898423-32898442 | None:intergenic | 45.0% | |
| GCGATGAGACTTATTTGAGG+AGG | - | chr4.3:32897839-32897858 | MS.gene003501:CDS | 45.0% | |
| GGGATACTTATCCGAGGAAA+TGG | - | chr4.3:32898127-32898146 | MS.gene003501:CDS | 45.0% | |
| GGTTGTGCTTATGACTACCA+AGG | - | chr4.3:32898005-32898024 | MS.gene003501:CDS | 45.0% | |
| GTCATATGCAAGAGCTTAGG+AGG | - | chr4.3:32897728-32897747 | MS.gene003501:CDS | 45.0% | |
| GTGGTCATATGCAAGAGCTT+AGG | - | chr4.3:32897725-32897744 | MS.gene003501:CDS | 45.0% | |
| TAGCGGTACTCTTGATCCTA+AGG | - | chr4.3:32897366-32897385 | MS.gene003501:CDS | 45.0% | |
| TATCCGAGGAAATGGGGTTT+GGG | - | chr4.3:32898135-32898154 | MS.gene003501:CDS | 45.0% | |
| TATTGACAGAGCAACGAGGT+TGG | - | chr4.3:32897411-32897430 | MS.gene003501:CDS | 45.0% | |
| TCAAGAGGGTGGTTATGGAT+AGG | - | chr4.3:32898106-32898125 | MS.gene003501:CDS | 45.0% | |
| TCTTGCCTTCAGAGAGAGAT+GGG | + | chr4.3:32897033-32897052 | None:intergenic | 45.0% | |
| TGAAGATGGTTCTCCTGAAG+TGG | - | chr4.3:32898623-32898642 | MS.gene003501:CDS | 45.0% | |
| TGATATTGAACCTGGTGAGG+AGG | - | chr4.3:32897984-32898003 | MS.gene003501:CDS | 45.0% | |
| TGCATCTTCTGATGAGGAGA+AGG | - | chr4.3:32898563-32898582 | MS.gene003501:CDS | 45.0% | |
| TGCTGTTCCTGATGTTGCTA+AGG | - | chr4.3:32897489-32897508 | MS.gene003501:CDS | 45.0% | |
| TGGATAGGGATACTTATCCG+AGG | - | chr4.3:32898121-32898140 | MS.gene003501:CDS | 45.0% | |
| TGTTGCTAAGATCAAGAGGG+TGG | - | chr4.3:32898095-32898114 | MS.gene003501:CDS | 45.0% | |
| TTATCCGAGGAAATGGGGTT+TGG | - | chr4.3:32898134-32898153 | MS.gene003501:CDS | 45.0% | |
| TTCTTGCCTTCAGAGAGAGA+TGG | + | chr4.3:32897034-32897053 | None:intergenic | 45.0% | |
| ! | AGGGTTAGGTCTGGGATTAT+GGG | - | chr4.3:32897748-32897767 | MS.gene003501:CDS | 45.0% |
| ! | TCATGAGAACTAGGGTTAGC+AGG | + | chr4.3:32897298-32897317 | None:intergenic | 45.0% |
| ! | TGATGATTCCGGGTTTGCTT+AGG | - | chr4.3:32897953-32897972 | MS.gene003501:CDS | 45.0% |
| ! | TGCAGAGATCAGTAACGGAA+AGG | - | chr4.3:32898761-32898780 | MS.gene003501:CDS | 45.0% |
| ! | TTTTGGATTTCGTGTGAGGC+CGG | - | chr4.3:32897652-32897671 | MS.gene003501:CDS | 45.0% |
| !! | AGGTTGGTGAAGTCTCAACA+AGG | - | chr4.3:32897427-32897446 | MS.gene003501:CDS | 45.0% |
| !! | CAGTTTGAGGTGTCGATTGT+AGG | + | chr4.3:32897142-32897161 | None:intergenic | 45.0% |
| !! | GGTGCTAAGTTGATGATTCC+GGG | - | chr4.3:32897943-32897962 | MS.gene003501:CDS | 45.0% |
| !! | GGTTTAGTTCTTGGTGTTGG+TGG | - | chr4.3:32897706-32897725 | MS.gene003501:CDS | 45.0% |
| !! | GTTAAGAAGGATGATGGGGA+AGG | - | chr4.3:32898357-32898376 | MS.gene003501:CDS | 45.0% |
| AAGGGCAATAGCTTCACCCT+TGG | + | chr4.3:32898025-32898044 | None:intergenic | 50.0% | |
| AAGGGTGAAGCTATTGCCCT+TGG | - | chr4.3:32898024-32898043 | MS.gene003501:CDS | 50.0% | |
| AGAGAGAGATGGGGACATGA+TGG | + | chr4.3:32897023-32897042 | None:intergenic | 50.0% | |
| AGCTGCTGCATCTTCTGATG+AGG | - | chr4.3:32898557-32898576 | MS.gene003501:CDS | 50.0% | |
| AGCTTAGGAGGGTTAGGTCT+GGG | - | chr4.3:32897740-32897759 | MS.gene003501:CDS | 50.0% | |
| AGTGACCAGTACGGACATTG+AGG | + | chr4.3:32897192-32897211 | None:intergenic | 50.0% | |
| ATAAGCACAACCTCCTCACC+AGG | + | chr4.3:32897997-32898016 | None:intergenic | 50.0% | |
| ATGTCCCCATCTCTCTCTGA+AGG | - | chr4.3:32897025-32897044 | MS.gene003501:CDS | 50.0% | |
| CAGGGAAGCTGGATAAGCAT+GGG | - | chr4.3:32898193-32898212 | MS.gene003501:CDS | 50.0% | |
| CGAGCTACCTTAGCAACATC+AGG | + | chr4.3:32897499-32897518 | None:intergenic | 50.0% | |
| CTTGCCTTCAGAGAGAGATG+GGG | + | chr4.3:32897032-32897051 | None:intergenic | 50.0% | |
| GAAAGTAGATGAAGCGGCTG+TGG | - | chr4.3:32898476-32898495 | MS.gene003501:CDS | 50.0% | |
| GAGGAGGGTTGTTATGCCTT+TGG | - | chr4.3:32897855-32897874 | MS.gene003501:CDS | 50.0% | |
| GAGGGTTGTTATGCCTTTGG+AGG | - | chr4.3:32897858-32897877 | MS.gene003501:CDS | 50.0% | |
| GTACTCCTCAAGAGTGGATG+AGG | - | chr4.3:32898229-32898248 | MS.gene003501:CDS | 50.0% | |
| GTGAAGTCTCAACAAGGTGC+TGG | - | chr4.3:32897433-32897452 | MS.gene003501:CDS | 50.0% | |
| GTGAGGCCGGTACTTATGTT+AGG | - | chr4.3:32897665-32897684 | MS.gene003501:CDS | 50.0% | |
| TCAGCAATGGGTCGTTTGAG+AGG | + | chr4.3:32897241-32897260 | None:intergenic | 50.0% | |
| TGCAAGAGCTTAGGAGGGTT+AGG | - | chr4.3:32897734-32897753 | MS.gene003501:CDS | 50.0% | |
| TGCTGATGAAGAGGGTGAGA+AGG | - | chr4.3:32898335-32898354 | MS.gene003501:CDS | 50.0% | |
| TGGACTTCTTAGCAGGAGCA+GGG | + | chr4.3:32898416-32898435 | None:intergenic | 50.0% | |
| TTCTCAGACTTGTCCACCTC+AGG | + | chr4.3:32898702-32898721 | None:intergenic | 50.0% | |
| TTGGACTTCTTAGCAGGAGC+AGG | + | chr4.3:32898417-32898436 | None:intergenic | 50.0% | |
| ! | GAAATGGGGTTTGGGACCTA+GGG | - | chr4.3:32898143-32898162 | MS.gene003501:CDS | 50.0% |
| ! | GAGGGGTATAGTGACCAGTA+CGG | + | chr4.3:32897201-32897220 | None:intergenic | 50.0% |
| ! | GAGGGTTAGGTCTGGGATTA+TGG | - | chr4.3:32897747-32897766 | MS.gene003501:CDS | 50.0% |
| ! | GTCTGGGATTATGGGTGAGA+AGG | - | chr4.3:32897756-32897775 | MS.gene003501:CDS | 50.0% |
| AGCCGCCATACCAGCAATCA+CGG | + | chr4.3:32898283-32898302 | None:intergenic | 55.0% | |
| AGTAGATGAAGCGGCTGTGG+AGG | - | chr4.3:32898479-32898498 | MS.gene003501:CDS | 55.0% | |
| CACTATACCCCTCTTCCAGC+TGG | - | chr4.3:32897208-32897227 | MS.gene003501:CDS | 55.0% | |
| GACCAGTACGGACATTGAGG+CGG | + | chr4.3:32897189-32897208 | None:intergenic | 55.0% | |
| GAGCTTAGGAGGGTTAGGTC+TGG | - | chr4.3:32897739-32897758 | MS.gene003501:CDS | 55.0% | |
| GCAGGGAAGCTGGATAAGCA+TGG | - | chr4.3:32898192-32898211 | MS.gene003501:CDS | 55.0% | |
| GGTCCCAAACCCCATTTCCT+CGG | + | chr4.3:32898141-32898160 | None:intergenic | 55.0% | |
| GTCGAGAAGACGGGTCATAG+CGG | - | chr4.3:32897349-32897368 | MS.gene003501:CDS | 55.0% | |
| GTGAGTGACCAGCTGGAAGA+GGG | + | chr4.3:32897219-32897238 | None:intergenic | 55.0% | |
| TGAGTGACCAGCTGGAAGAG+GGG | + | chr4.3:32897218-32897237 | None:intergenic | 55.0% | |
| TTGAGAGGTGAGTGACCAGC+TGG | + | chr4.3:32897226-32897245 | None:intergenic | 55.0% | |
| ! | GGAAATGGGGTTTGGGACCT+AGG | - | chr4.3:32898142-32898161 | MS.gene003501:CDS | 55.0% |
| CGCCGTGATTGCTGGTATGG+CGG | - | chr4.3:32898278-32898297 | MS.gene003501:CDS | 60.0% | |
| CTGGTATGGCGGCTGCTACT+GGG | - | chr4.3:32898289-32898308 | MS.gene003501:CDS | 60.0% | |
| GACCGCCTCAATGTCCGTAC+TGG | - | chr4.3:32897184-32897203 | MS.gene003501:CDS | 60.0% | |
| GCTGATTGCTGCAGGGAAGC+TGG | - | chr4.3:32898182-32898201 | MS.gene003501:CDS | 60.0% | |
| GGACGCCGTGATTGCTGGTA+TGG | - | chr4.3:32898275-32898294 | MS.gene003501:CDS | 60.0% | |
| GGTGAGTGACCAGCTGGAAG+AGG | + | chr4.3:32897220-32897239 | None:intergenic | 60.0% | |
| !! | GAGTGAAGTCGGTTCGCCTG+AGG | - | chr4.3:32898683-32898702 | MS.gene003501:CDS | 60.0% |
| !! | TGAAGTCGGTTCGCCTGAGG+TGG | - | chr4.3:32898686-32898705 | MS.gene003501:CDS | 60.0% |
| ATCACGGCGTCCCCACCAGT+AGG | + | chr4.3:32898267-32898286 | None:intergenic | 65.0% | |
| GCTGGTATGGCGGCTGCTAC+TGG | - | chr4.3:32898288-32898307 | MS.gene003501:CDS | 65.0% | |
| GGTGGGGACGCCGTGATTGC+TGG | - | chr4.3:32898270-32898289 | MS.gene003501:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 32897013 | 32898854 | 32897013 | ID=MS.gene003501 |
| chr4.3 | mRNA | 32897013 | 32898854 | 32897013 | ID=MS.gene003501.t1;Parent=MS.gene003501 |
| chr4.3 | exon | 32897013 | 32898854 | 32897013 | ID=MS.gene003501.t1.exon1;Parent=MS.gene003501.t1 |
| chr4.3 | CDS | 32897013 | 32898854 | 32897013 | ID=cds.MS.gene003501.t1;Parent=MS.gene003501.t1 |
| Gene Sequence |
| Protein sequence |
