Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52097.t1 | XP_013456513.1 | 98.7 | 449 | 6 | 0 | 1 | 449 | 1 | 449 | 2.20E-243 | 851.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52097.t1 | Q9LD90 | 86.4 | 413 | 53 | 2 | 33 | 445 | 26 | 435 | 3.5e-210 | 732.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52097.t1 | A0A072ULA4 | 98.7 | 449 | 6 | 0 | 1 | 449 | 1 | 449 | 1.6e-243 | 851.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053122 | MS.gene52097 | 0.814844 | 1.25E-51 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52097.t1 | MTR_4g074160 | 97.879 | 613 | 12 | 1 | 1 | 613 | 1 | 612 | 0.0 | 1215 |
| MS.gene52097.t1 | MTR_6g004400 | 30.348 | 201 | 106 | 5 | 80 | 246 | 346 | 546 | 4.51e-23 | 103 |
| MS.gene52097.t1 | MTR_6g004400 | 40.244 | 82 | 49 | 0 | 80 | 161 | 346 | 427 | 8.90e-12 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52097.t1 | AT3G57150 | 80.171 | 469 | 77 | 6 | 9 | 475 | 6 | 460 | 0.0 | 736 |
| MS.gene52097.t1 | AT5G14460 | 31.771 | 192 | 97 | 5 | 89 | 246 | 323 | 514 | 2.19e-23 | 104 |
Find 155 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGGGTTAGGTCTGGGATTA+TGG | 0.176925 | 4.1:-29735410 | MS.gene52097:CDS |
| AGCCGCTTCATCTACTTTCT+TGG | 0.219661 | 4.1:+29734685 | None:intergenic |
| GTTCATTTGGGTTTAGTTCT+TGG | 0.230459 | 4.1:-29735460 | MS.gene52097:CDS |
| TAGGACTATGTGTGTTCATT+TGG | 0.258261 | 4.1:-29735473 | MS.gene52097:CDS |
| AGAAACATTTAGTTGTGTTT+TGG | 0.271760 | 4.1:-29735522 | MS.gene52097:CDS |
| TGGTGCTAAGTTGATGATTC+CGG | 0.283073 | 4.1:-29735215 | MS.gene52097:CDS |
| GATCTCTGCAGCATTATCTT+TGG | 0.294718 | 4.1:+29734409 | None:intergenic |
| GCTGGTATGGCGGCTGCTAC+TGG | 0.295017 | 4.1:-29734869 | MS.gene52097:CDS |
| TTCTGGTTCTGTATCTTTGT+TGG | 0.332866 | 4.1:+29736089 | None:intergenic |
| GGAAATGGGGTTTGGGTCCT+AGG | 0.334847 | 4.1:-29735015 | MS.gene52097:CDS |
| ATGTCTTCACCTATTCTTCT+TGG | 0.341008 | 4.1:+29734315 | None:intergenic |
| GAGGAGGGTTGTTATGCCTT+TGG | 0.341470 | 4.1:-29735302 | MS.gene52097:CDS |
| ACCATCAACTTCAGCAACTT+TGG | 0.346981 | 4.1:+29734724 | None:intergenic |
| TCTTGAGGAGTACTCTCATT+TGG | 0.359979 | 4.1:+29734938 | None:intergenic |
| CGTGCTCTTGAAACTTTAAC+TGG | 0.360375 | 4.1:-29735640 | MS.gene52097:CDS |
| TATGGGTGAGAAGGATAATA+TGG | 0.361091 | 4.1:-29735392 | MS.gene52097:CDS |
| GGTGCTAAGTTGATGATTCC+GGG | 0.361757 | 4.1:-29735214 | MS.gene52097:CDS |
| ACACTTGATCCTAAGGTTAC+TGG | 0.362659 | 4.1:-29735784 | MS.gene52097:CDS |
| CAGTTTGAGGTGTCGATTGT+AGG | 0.363827 | 4.1:+29736018 | None:intergenic |
| GGGATACTTATCCAAGGAAA+TGG | 0.367770 | 4.1:-29735030 | MS.gene52097:CDS |
| TTTGACTAGTTATAAGAGAT+TGG | 0.369510 | 4.1:-29735272 | MS.gene52097:CDS |
| AGGACTATGTGTGTTCATTT+GGG | 0.370476 | 4.1:-29735472 | MS.gene52097:CDS |
| GTTTGATCATGAAATCTTGC+TGG | 0.372543 | 4.1:+29736055 | None:intergenic |
| TTATCCAAGGAAATGGGGTT+TGG | 0.379286 | 4.1:-29735023 | MS.gene52097:CDS |
| TGTCTTCACCTATTCTTCTT+GGG | 0.379511 | 4.1:+29734316 | None:intergenic |
| ATTGCTGATTATCTGAAATA+TGG | 0.384973 | 4.1:-29735904 | MS.gene52097:CDS |
| GGTGGGGACGCCGTGATTGC+TGG | 0.392518 | 4.1:-29734887 | MS.gene52097:CDS |
| CAAAGATGCCCAAGAAGAAT+AGG | 0.398166 | 4.1:-29734324 | None:intergenic |
| GGTTACTATGCATGATGTTA+TGG | 0.406717 | 4.1:-29735371 | MS.gene52097:CDS |
| TTCTCAGACTTGTCCACCTC+AGG | 0.408947 | 4.1:+29734458 | None:intergenic |
| GGATACTTATCCAAGGAAAT+GGG | 0.411240 | 4.1:-29735029 | MS.gene52097:CDS |
| CAACAAAATGGGCCAGTTTG+AGG | 0.417673 | 4.1:+29736005 | None:intergenic |
| CTGGTATGGCGGCTGCTACT+GGG | 0.423425 | 4.1:-29734868 | MS.gene52097:CDS |
| TAAGATCAAGAGGGTGGTTA+TGG | 0.424039 | 4.1:-29735056 | MS.gene52097:CDS |
| TTGGACTTCTTAGCAGGAGC+AGG | 0.428365 | 4.1:+29734743 | None:intergenic |
| AGGGTTAGGTCTGGGATTAT+GGG | 0.428508 | 4.1:-29735409 | MS.gene52097:CDS |
| TATCCAAGGAAATGGGGTTT+GGG | 0.429219 | 4.1:-29735022 | MS.gene52097:CDS |
| TGATGATTCCGGGTTTGCTT+AGG | 0.429928 | 4.1:-29735204 | MS.gene52097:CDS |
| GCTGATTGCTGCAGGGAAGC+TGG | 0.431749 | 4.1:-29734975 | MS.gene52097:CDS |
| TCAAGAGGGTGGTTATGGAT+AGG | 0.433226 | 4.1:-29735051 | MS.gene52097:CDS |
| GGACCCAAACCCCATTTCCT+TGG | 0.435435 | 4.1:+29735019 | None:intergenic |
| AAGAAGAAGGATAAAGAGAA+TGG | 0.436116 | 4.1:-29734623 | MS.gene52097:CDS |
| GCTGTGAATGCTATTTGTTA+TGG | 0.437584 | 4.1:-29735235 | MS.gene52097:CDS |
| AGGTGAGTGACCAGCTGGAA+GGG | 0.444423 | 4.1:+29735939 | None:intergenic |
| TGAGATGACTACTGCTGTTA+TGG | 0.447598 | 4.1:-29735104 | MS.gene52097:CDS |
| AGAGGGTGAGAAGGTTAAGA+AGG | 0.448672 | 4.1:-29734813 | MS.gene52097:CDS |
| CACTTGATCCTAAGGTTACT+GGG | 0.449632 | 4.1:-29735783 | MS.gene52097:CDS |
| TTATAAGAGATTGGTCGTTA+AGG | 0.450138 | 4.1:-29735263 | MS.gene52097:CDS |
| AGCTTAGGAGGGTTAGGTCT+GGG | 0.450353 | 4.1:-29735417 | MS.gene52097:CDS |
| CAAGAGGGTGGTTATGGATA+GGG | 0.456296 | 4.1:-29735050 | MS.gene52097:CDS |
| TCTTGCCTTCAGAGAGAGAT+GGG | 0.460200 | 4.1:+29736127 | None:intergenic |
| GCAACTTTGGACTTCTTAGC+AGG | 0.461403 | 4.1:+29734737 | None:intergenic |
| AAGAAGAAGCTGATTGCTGC+AGG | 0.463700 | 4.1:-29734983 | MS.gene52097:CDS |
| GGACGCCGTGATTGCTGGTA+TGG | 0.464126 | 4.1:-29734882 | MS.gene52097:CDS |
| CTACAATCGACACCTCAAAC+TGG | 0.467674 | 4.1:-29736017 | MS.gene52097:CDS |
| TGCTGATGAAGAGGGTGAGA+AGG | 0.468986 | 4.1:-29734822 | MS.gene52097:CDS |
| TTGGGTTTAGTTCTTGGTGT+TGG | 0.469171 | 4.1:-29735454 | MS.gene52097:CDS |
| GTTCTCATGAGGTTGTTGCT+TGG | 0.470108 | 4.1:-29735849 | MS.gene52097:CDS |
| TTCTTGCCTTCAGAGAGAGA+TGG | 0.474253 | 4.1:+29736126 | None:intergenic |
| TGCTGTTCCTGATGTTGCTA+AGG | 0.476360 | 4.1:-29735668 | MS.gene52097:CDS |
| TCCAAAGTTGCTGAAGTTGA+TGG | 0.479321 | 4.1:-29734725 | MS.gene52097:CDS |
| GAGGGTTGTTATGCCTTTGG+AGG | 0.479919 | 4.1:-29735299 | MS.gene52097:CDS |
| GGTTTAGTTCTTGGTGTTGG+TGG | 0.480018 | 4.1:-29735451 | MS.gene52097:CDS |
| GCAACAACCTCATGAGAACT+AGG | 0.480488 | 4.1:+29735853 | None:intergenic |
| TGCAAGAGCTTAGGAGGGTT+AGG | 0.482197 | 4.1:-29735423 | MS.gene52097:CDS |
| GTCTGGGATTATGGGTGAGA+AGG | 0.485087 | 4.1:-29735401 | MS.gene52097:CDS |
| TGCTCAGTATGTTTATGATA+AGG | 0.488747 | 4.1:-29735347 | MS.gene52097:CDS |
| GAGCTTAGGAGGGTTAGGTC+TGG | 0.490050 | 4.1:-29735418 | MS.gene52097:CDS |
| TGATGAGGAGAAGGTTGAAA+AGG | 0.490781 | 4.1:-29734585 | MS.gene52097:CDS |
| AAGAGTATGTTTGTATTGCT+AGG | 0.493913 | 4.1:-29735699 | MS.gene52097:CDS |
| GAGAAGGTTAAGAAGGATGA+TGG | 0.494500 | 4.1:-29734806 | MS.gene52097:CDS |
| TCATGAGAACTAGGGTTAGC+AGG | 0.495387 | 4.1:+29735862 | None:intergenic |
| AGAAGGTTAAGAAGGATGAT+GGG | 0.497001 | 4.1:-29734805 | MS.gene52097:CDS |
| GGTTGTGCTTATGACTACTA+AGG | 0.498206 | 4.1:-29735152 | MS.gene52097:CDS |
| GTGAGGCTGGTACTTACGTT+AGG | 0.500342 | 4.1:-29735492 | MS.gene52097:CDS |
| GGTGAGTGACCAGCTGGAAG+GGG | 0.501707 | 4.1:+29735940 | None:intergenic |
| CACAAGGAAAAGGGTGAAGA+TGG | 0.502250 | 4.1:-29734548 | MS.gene52097:CDS |
| ATCAAATTCCCAGTAACCTT+AGG | 0.503949 | 4.1:+29735775 | None:intergenic |
| CGAGCTACCTTAGCAACATC+AGG | 0.506820 | 4.1:+29735661 | None:intergenic |
| GTCATATGCAAGAGCTTAGG+AGG | 0.508607 | 4.1:-29735429 | MS.gene52097:CDS |
| GAAATGGGGTTTGGGTCCTA+GGG | 0.508825 | 4.1:-29735014 | MS.gene52097:CDS |
| TATTCTTCGTGTCGAGAAGA+CGG | 0.508925 | 4.1:-29735818 | MS.gene52097:CDS |
| GAAAGTAGATGAAGCGGCTG+TGG | 0.509335 | 4.1:-29734681 | MS.gene52097:CDS |
| AAAGAGATTGCTGATGAAGA+GGG | 0.509825 | 4.1:-29734830 | MS.gene52097:CDS |
| TAGTGGTACACTTGATCCTA+AGG | 0.515379 | 4.1:-29735791 | MS.gene52097:CDS |
| TTGAGAGGTGAGTGACCAGC+TGG | 0.515974 | 4.1:+29735934 | None:intergenic |
| ATTCTTCGTGTCGAGAAGAC+GGG | 0.516109 | 4.1:-29735817 | MS.gene52097:CDS |
| AGAGCGATGAGACTTATTTG+AGG | 0.518362 | 4.1:-29735321 | MS.gene52097:CDS |
| ATAAGCACAACCTCCTCGCC+AGG | 0.519005 | 4.1:+29735163 | None:intergenic |
| GTGGTCATATGCAAGAGCTT+AGG | 0.520527 | 4.1:-29735432 | MS.gene52097:CDS |
| GTGAAGTCTCAACAAGGAGC+TGG | 0.522928 | 4.1:-29735724 | MS.gene52097:CDS |
| AGAGAGAGATGGGGACATGA+TGG | 0.524072 | 4.1:+29736137 | None:intergenic |
| GTACTCCTCAAGAGTGGATG+AGG | 0.527125 | 4.1:-29734928 | MS.gene52097:CDS |
| CGATGAGACTTATTTGAGGA+GGG | 0.530709 | 4.1:-29735317 | MS.gene52097:CDS |
| GACCGCCTCAATGTCCGTAC+TGG | 0.533848 | 4.1:-29735973 | MS.gene52097:CDS |
| TTTGAGAATGATATTGAACC+TGG | 0.541287 | 4.1:-29735181 | MS.gene52097:CDS |
| TATTTCAGATAATCAGCAAT+GGG | 0.541396 | 4.1:+29735907 | None:intergenic |
| TGAAGTCGGTTCGCCTGAGG+TGG | 0.545768 | 4.1:-29734471 | MS.gene52097:CDS |
| TGCATCTTCTGATGAGGAGA+AGG | 0.555918 | 4.1:-29734594 | MS.gene52097:CDS |
| AGCCGCCATACCAGCAATCA+CGG | 0.555963 | 4.1:+29734877 | None:intergenic |
| TTCTCAAACCTAAGCAAACC+CGG | 0.556341 | 4.1:+29735196 | None:intergenic |
| AAGGGTGAAGCTATTGCCCT+TGG | 0.556685 | 4.1:-29735133 | MS.gene52097:CDS |
| GTGAGTGACCAGCTGGAAGG+GGG | 0.556834 | 4.1:+29735941 | None:intergenic |
| GTTATGGCAACTTGTGATCA+TGG | 0.557316 | 4.1:-29735088 | MS.gene52097:CDS |
| TGAAGATGGTTCTCCTGAAG+TGG | 0.558835 | 4.1:-29734534 | MS.gene52097:CDS |
| TTAAGAAGGATGATGGGGAA+GGG | 0.559638 | 4.1:-29734799 | MS.gene52097:CDS |
| GTTAAGAAGGATGATGGGGA+AGG | 0.562363 | 4.1:-29734800 | MS.gene52097:CDS |
| GACCAAGAAAGTAGATGAAG+CGG | 0.563615 | 4.1:-29734687 | MS.gene52097:CDS |
| GTCGAGAAGACGGGTCATAG+TGG | 0.565472 | 4.1:-29735808 | MS.gene52097:CDS |
| CTGCTGTTAAGAGACAACTT+AGG | 0.565713 | 4.1:-29735588 | MS.gene52097:CDS |
| ATGTCCCCATCTCTCTCTGA+AGG | 0.569959 | 4.1:-29736132 | MS.gene52097:CDS |
| AGTAGATGAAGCGGCTGTGG+AGG | 0.570309 | 4.1:-29734678 | MS.gene52097:CDS |
| TGGACTTCTTAGCAGGAGCA+GGG | 0.572350 | 4.1:+29734744 | None:intergenic |
| GCAGGGAAGCTGGATAAGCA+TGG | 0.572801 | 4.1:-29734965 | MS.gene52097:CDS |
| CGCCGTGATTGCTGGTATGG+CGG | 0.577954 | 4.1:-29734879 | MS.gene52097:CDS |
| TTCTTCTTCATAGAAGCCCT+AGG | 0.578222 | 4.1:+29734998 | None:intergenic |
| GAAAGAGATTGCTGATGAAG+AGG | 0.579848 | 4.1:-29734831 | MS.gene52097:CDS |
| CACAAGGAAACGAGTGAAGT+CGG | 0.580195 | 4.1:-29734485 | MS.gene52097:CDS |
| GCGATGAGACTTATTTGAGG+AGG | 0.584233 | 4.1:-29735318 | MS.gene52097:CDS |
| CAGGGAAGCTGGATAAGCAT+GGG | 0.585096 | 4.1:-29734964 | MS.gene52097:CDS |
| TCAGCAATGGGTCGTTTGAG+AGG | 0.590490 | 4.1:+29735919 | None:intergenic |
| GAGGTGAGTGACCAGCTGGA+AGG | 0.595183 | 4.1:+29735938 | None:intergenic |
| ACATTCCTCATCCACTCTTG+AGG | 0.608152 | 4.1:+29734923 | None:intergenic |
| GAAGGTTAAGAAGGATGATG+GGG | 0.610370 | 4.1:-29734804 | MS.gene52097:CDS |
| CTAGTCAAAAGAACCTCCAA+AGG | 0.615878 | 4.1:+29735286 | None:intergenic |
| TATTGACAGAGCAACGAGGT+TGG | 0.616767 | 4.1:-29735746 | MS.gene52097:CDS |
| TGAGTGACCAGCTGGAAGGG+GGG | 0.617538 | 4.1:+29735942 | None:intergenic |
| AGTGACCAGTACGGACATTG+AGG | 0.623451 | 4.1:+29735968 | None:intergenic |
| CTCTTAACAGCAGAAATCAA+AGG | 0.625059 | 4.1:+29735598 | None:intergenic |
| ATGAGAGTACTCCTCAAGAG+TGG | 0.625351 | 4.1:-29734934 | MS.gene52097:CDS |
| ATATTTCAGATAATCAGCAA+TGG | 0.627850 | 4.1:+29735906 | None:intergenic |
| TGCAGAGATCAGTAACGGAA+AGG | 0.627993 | 4.1:-29734396 | MS.gene52097:CDS |
| GTATTGTTGCTAAGATCAAG+AGG | 0.631960 | 4.1:-29735066 | MS.gene52097:CDS |
| CAACAACCTCATGAGAACTA+GGG | 0.632219 | 4.1:+29735854 | None:intergenic |
| GATACTTATCCAAGGAAATG+GGG | 0.632247 | 4.1:-29735028 | MS.gene52097:CDS |
| GAGTGAAGTCGGTTCGCCTG+AGG | 0.633165 | 4.1:-29734474 | MS.gene52097:CDS |
| TGCTAACCCTAGTTCTCATG+AGG | 0.636176 | 4.1:-29735860 | MS.gene52097:CDS |
| AATGCTGCAGAGATCAGTAA+CGG | 0.637087 | 4.1:-29734401 | MS.gene52097:CDS |
| TAGTCATCTCAGCAATACCA+AGG | 0.640655 | 4.1:+29735116 | None:intergenic |
| AGCTGCTGCATCTTCTGATG+AGG | 0.641491 | 4.1:-29734600 | MS.gene52097:CDS |
| TGGATAGGGATACTTATCCA+AGG | 0.646492 | 4.1:-29735036 | MS.gene52097:CDS |
| TTAACAGCAGAAATCAAAGG+TGG | 0.656440 | 4.1:+29735601 | None:intergenic |
| AGAAGAAGCTGATTGCTGCA+GGG | 0.658320 | 4.1:-29734982 | MS.gene52097:CDS |
| GAATGATATTGAACCTGGCG+AGG | 0.660663 | 4.1:-29735176 | MS.gene52097:CDS |
| TGTTGCTAAGATCAAGAGGG+TGG | 0.661471 | 4.1:-29735062 | MS.gene52097:CDS |
| ATCACGGCGTCCCCACCAGT+AGG | 0.665216 | 4.1:+29734893 | None:intergenic |
| TGATATTGAACCTGGCGAGG+AGG | 0.668163 | 4.1:-29735173 | MS.gene52097:CDS |
| CTTGCCTTCAGAGAGAGATG+GGG | 0.670821 | 4.1:+29736128 | None:intergenic |
| AGTCATCTCAGCAATACCAA+GGG | 0.685774 | 4.1:+29735117 | None:intergenic |
| GTTGTGCTTATGACTACTAA+GGG | 0.695369 | 4.1:-29735151 | MS.gene52097:CDS |
| GACCAGTACGGACATTGAGG+CGG | 0.696590 | 4.1:+29735971 | None:intergenic |
| TATTGTTGCTAAGATCAAGA+GGG | 0.700862 | 4.1:-29735065 | MS.gene52097:CDS |
| AGGTTGGTGAAGTCTCAACA+AGG | 0.711770 | 4.1:-29735730 | MS.gene52097:CDS |
| TCATATGCAAGAGCTTAGGA+GGG | 0.728673 | 4.1:-29735428 | MS.gene52097:CDS |
| TTTGTATTGACAGAGCAACG+AGG | 0.787641 | 4.1:-29735750 | MS.gene52097:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AAAGAAGAAGAAAAAGAAGA+AGG | - | chr4.1:29735833-29735852 | MS.gene52097:CDS | 25.0% |
| ! | ATATTTCAGATAATCAGCAA+TGG | + | chr4.1:29734566-29734585 | None:intergenic | 25.0% |
| ! | TATTTCAGATAATCAGCAAT+GGG | + | chr4.1:29734565-29734584 | None:intergenic | 25.0% |
| !! | AGAAACATTTAGTTGTGTTT+TGG | - | chr4.1:29734947-29734966 | MS.gene52097:CDS | 25.0% |
| !! | ATTGCTGATTATCTGAAATA+TGG | - | chr4.1:29734565-29734584 | MS.gene52097:CDS | 25.0% |
| !! | TTTGACTAGTTATAAGAGAT+TGG | - | chr4.1:29735197-29735216 | MS.gene52097:CDS | 25.0% |
| !!! | TCGTAGTTTTTCAACAAAAT+GGG | + | chr4.1:29734478-29734497 | None:intergenic | 25.0% |
| AAGAAGAAGGATAAAGAGAA+TGG | - | chr4.1:29735846-29735865 | MS.gene52097:CDS | 30.0% | |
| TATTGTTGCTAAGATCAAGA+GGG | - | chr4.1:29735404-29735423 | MS.gene52097:CDS | 30.0% | |
| TGCTCAGTATGTTTATGATA+AGG | - | chr4.1:29735122-29735141 | MS.gene52097:CDS | 30.0% | |
| TTTGAGAATGATATTGAACC+TGG | - | chr4.1:29735288-29735307 | MS.gene52097:CDS | 30.0% | |
| ! | AAAAAGAAGCACAAGGAAAA+GGG | - | chr4.1:29735912-29735931 | MS.gene52097:CDS | 30.0% |
| ! | AAGAGTATGTTTGTATTGCT+AGG | - | chr4.1:29734770-29734789 | MS.gene52097:CDS | 30.0% |
| ! | ATTGTAGGTGTAAGTTTTTC+AGG | + | chr4.1:29734439-29734458 | None:intergenic | 30.0% |
| ! | TTATAAGAGATTGGTCGTTA+AGG | - | chr4.1:29735206-29735225 | MS.gene52097:CDS | 30.0% |
| !! | GTCGTAGTTTTTCAACAAAA+TGG | + | chr4.1:29734479-29734498 | None:intergenic | 30.0% |
| AAAGAGATTGCTGATGAAGA+GGG | - | chr4.1:29735639-29735658 | MS.gene52097:CDS | 35.0% | |
| AGAAGGTTAAGAAGGATGAT+GGG | - | chr4.1:29735664-29735683 | MS.gene52097:CDS | 35.0% | |
| AGGACTATGTGTGTTCATTT+GGG | - | chr4.1:29734997-29735016 | MS.gene52097:CDS | 35.0% | |
| ATCAAATTCCCAGTAACCTT+AGG | + | chr4.1:29734697-29734716 | None:intergenic | 35.0% | |
| CTCTTAACAGCAGAAATCAA+AGG | + | chr4.1:29734874-29734893 | None:intergenic | 35.0% | |
| GATACTTATCCAAGGAAATG+GGG | - | chr4.1:29735441-29735460 | MS.gene52097:CDS | 35.0% | |
| GGATACTTATCCAAGGAAAT+GGG | - | chr4.1:29735440-29735459 | MS.gene52097:CDS | 35.0% | |
| GGTTACTATGCATGATGTTA+TGG | - | chr4.1:29735098-29735117 | MS.gene52097:CDS | 35.0% | |
| GTATTGTTGCTAAGATCAAG+AGG | - | chr4.1:29735403-29735422 | MS.gene52097:CDS | 35.0% | |
| GTTGTGCTTATGACTACTAA+GGG | - | chr4.1:29735318-29735337 | MS.gene52097:CDS | 35.0% | |
| GTTTGATCATGAAATCTTGC+TGG | + | chr4.1:29734417-29734436 | None:intergenic | 35.0% | |
| TAGGACTATGTGTGTTCATT+TGG | - | chr4.1:29734996-29735015 | MS.gene52097:CDS | 35.0% | |
| TATGGGTGAGAAGGATAATA+TGG | - | chr4.1:29735077-29735096 | MS.gene52097:CDS | 35.0% | |
| TTAACAGCAGAAATCAAAGG+TGG | + | chr4.1:29734871-29734890 | None:intergenic | 35.0% | |
| ! | GAAAAAGAAGCACAAGGAAA+AGG | - | chr4.1:29735911-29735930 | MS.gene52097:CDS | 35.0% |
| ! | GAAGAAGAAAAAGAAGCACA+AGG | - | chr4.1:29735968-29735987 | MS.gene52097:CDS | 35.0% |
| ! | GCTGTGAATGCTATTTGTTA+TGG | - | chr4.1:29735234-29735253 | MS.gene52097:CDS | 35.0% |
| !! | GTTCATTTGGGTTTAGTTCT+TGG | - | chr4.1:29735009-29735028 | MS.gene52097:CDS | 35.0% |
| !! | TTCTGGTTCTGTATCTTTGT+TGG | + | chr4.1:29734383-29734402 | None:intergenic | 35.0% |
| !!! | ATGAAATCTTGCTGGTTTTG+TGG | + | chr4.1:29734409-29734428 | None:intergenic | 35.0% |
| AATGCTGCAGAGATCAGTAA+CGG | - | chr4.1:29736068-29736087 | MS.gene52097:CDS | 40.0% | |
| ACACTTGATCCTAAGGTTAC+TGG | - | chr4.1:29734685-29734704 | MS.gene52097:CDS | 40.0% | |
| ACCATCAACTTCAGCAACTT+TGG | + | chr4.1:29735748-29735767 | None:intergenic | 40.0% | |
| AGAGCGATGAGACTTATTTG+AGG | - | chr4.1:29735148-29735167 | MS.gene52097:CDS | 40.0% | |
| AGTCATCTCAGCAATACCAA+GGG | + | chr4.1:29735355-29735374 | None:intergenic | 40.0% | |
| CAACAACCTCATGAGAACTA+GGG | + | chr4.1:29734618-29734637 | None:intergenic | 40.0% | |
| CACTTGATCCTAAGGTTACT+GGG | - | chr4.1:29734686-29734705 | MS.gene52097:CDS | 40.0% | |
| CGATGAGACTTATTTGAGGA+GGG | - | chr4.1:29735152-29735171 | MS.gene52097:CDS | 40.0% | |
| CGTGCTCTTGAAACTTTAAC+TGG | - | chr4.1:29734829-29734848 | MS.gene52097:CDS | 40.0% | |
| CTAGTCAAAAGAACCTCCAA+AGG | + | chr4.1:29735186-29735205 | None:intergenic | 40.0% | |
| CTGCTGTTAAGAGACAACTT+AGG | - | chr4.1:29734881-29734900 | MS.gene52097:CDS | 40.0% | |
| GAAAGAGATTGCTGATGAAG+AGG | - | chr4.1:29735638-29735657 | MS.gene52097:CDS | 40.0% | |
| GAAGGTTAAGAAGGATGATG+GGG | - | chr4.1:29735665-29735684 | MS.gene52097:CDS | 40.0% | |
| GACCAAGAAAGTAGATGAAG+CGG | - | chr4.1:29735782-29735801 | MS.gene52097:CDS | 40.0% | |
| GAGAAGGTTAAGAAGGATGA+TGG | - | chr4.1:29735663-29735682 | MS.gene52097:CDS | 40.0% | |
| GATCTCTGCAGCATTATCTT+TGG | + | chr4.1:29736063-29736082 | None:intergenic | 40.0% | |
| GGGATACTTATCCAAGGAAA+TGG | - | chr4.1:29735439-29735458 | MS.gene52097:CDS | 40.0% | |
| GGTTGTGCTTATGACTACTA+AGG | - | chr4.1:29735317-29735336 | MS.gene52097:CDS | 40.0% | |
| GTTATGGCAACTTGTGATCA+TGG | - | chr4.1:29735381-29735400 | MS.gene52097:CDS | 40.0% | |
| TAAGATCAAGAGGGTGGTTA+TGG | - | chr4.1:29735413-29735432 | MS.gene52097:CDS | 40.0% | |
| TAGTCATCTCAGCAATACCA+AGG | + | chr4.1:29735356-29735375 | None:intergenic | 40.0% | |
| TAGTGGTACACTTGATCCTA+AGG | - | chr4.1:29734678-29734697 | MS.gene52097:CDS | 40.0% | |
| TATCCAAGGAAATGGGGTTT+GGG | - | chr4.1:29735447-29735466 | MS.gene52097:CDS | 40.0% | |
| TATTCTTCGTGTCGAGAAGA+CGG | - | chr4.1:29734651-29734670 | MS.gene52097:CDS | 40.0% | |
| TCATATGCAAGAGCTTAGGA+GGG | - | chr4.1:29735041-29735060 | MS.gene52097:CDS | 40.0% | |
| TCCAAAGTTGCTGAAGTTGA+TGG | - | chr4.1:29735744-29735763 | MS.gene52097:CDS | 40.0% | |
| TGAGATGACTACTGCTGTTA+TGG | - | chr4.1:29735365-29735384 | MS.gene52097:CDS | 40.0% | |
| TGATGAGGAGAAGGTTGAAA+AGG | - | chr4.1:29735884-29735903 | MS.gene52097:CDS | 40.0% | |
| TGGATAGGGATACTTATCCA+AGG | - | chr4.1:29735433-29735452 | MS.gene52097:CDS | 40.0% | |
| TTATCCAAGGAAATGGGGTT+TGG | - | chr4.1:29735446-29735465 | MS.gene52097:CDS | 40.0% | |
| TTCTCAAACCTAAGCAAACC+CGG | + | chr4.1:29735276-29735295 | None:intergenic | 40.0% | |
| TTCTTCTTCATAGAAGCCCT+AGG | + | chr4.1:29735474-29735493 | None:intergenic | 40.0% | |
| ! | GGAGAAGAAAAAGAAGCACA+AGG | - | chr4.1:29735905-29735924 | MS.gene52097:CDS | 40.0% |
| ! | TTCTCAGACTTTTCCACTTC+AGG | + | chr4.1:29735951-29735970 | None:intergenic | 40.0% |
| ! | TTTGTATTGACAGAGCAACG+AGG | - | chr4.1:29734719-29734738 | MS.gene52097:CDS | 40.0% |
| !! | TCTTGAGGAGTACTCTCATT+TGG | + | chr4.1:29735534-29735553 | None:intergenic | 40.0% |
| !! | TGGTGCTAAGTTGATGATTC+CGG | - | chr4.1:29735254-29735273 | MS.gene52097:CDS | 40.0% |
| !! | TGTGTTTTGGATTTCGTGTG+AGG | - | chr4.1:29734960-29734979 | MS.gene52097:CDS | 40.0% |
| !! | TTAAGAAGGATGATGGGGAA+GGG | - | chr4.1:29735670-29735689 | MS.gene52097:CDS | 40.0% |
| !! | TTGGGTTTAGTTCTTGGTGT+TGG | - | chr4.1:29735015-29735034 | MS.gene52097:CDS | 40.0% |
| !!! | AATGTTGTTTTGCCTACTGG+TGG | - | chr4.1:29735564-29735583 | MS.gene52097:CDS | 40.0% |
| !!! | AGGAATGTTGTTTTGCCTAC+TGG | - | chr4.1:29735561-29735580 | MS.gene52097:CDS | 40.0% |
| !!! | ATGTTGTTTTGCCTACTGGT+GGG | - | chr4.1:29735565-29735584 | MS.gene52097:CDS | 40.0% |
| AAGAAGAAGCTGATTGCTGC+AGG | - | chr4.1:29735486-29735505 | MS.gene52097:CDS | 45.0% | |
| ACATTCCTCATCCACTCTTG+AGG | + | chr4.1:29735549-29735568 | None:intergenic | 45.0% | |
| AGAAGAAGCTGATTGCTGCA+GGG | - | chr4.1:29735487-29735506 | MS.gene52097:CDS | 45.0% | |
| AGAGGGTGAGAAGGTTAAGA+AGG | - | chr4.1:29735656-29735675 | MS.gene52097:CDS | 45.0% | |
| AGCCGCTTCATCTACTTTCT+TGG | + | chr4.1:29735787-29735806 | None:intergenic | 45.0% | |
| ATTCTTCGTGTCGAGAAGAC+GGG | - | chr4.1:29734652-29734671 | MS.gene52097:CDS | 45.0% | |
| CAACAAAATGGGCCAGTTTG+AGG | + | chr4.1:29734467-29734486 | None:intergenic | 45.0% | |
| CAAGAGGGTGGTTATGGATA+GGG | - | chr4.1:29735419-29735438 | MS.gene52097:CDS | 45.0% | |
| CACAAGGAAAAGGGTGAAGA+TGG | - | chr4.1:29735921-29735940 | MS.gene52097:CDS | 45.0% | |
| CACAAGGAAACGAGTGAAGT+CGG | - | chr4.1:29735984-29736003 | MS.gene52097:CDS | 45.0% | |
| CTACAATCGACACCTCAAAC+TGG | - | chr4.1:29734452-29734471 | MS.gene52097:CDS | 45.0% | |
| GAATGATATTGAACCTGGCG+AGG | - | chr4.1:29735293-29735312 | MS.gene52097:CDS | 45.0% | |
| GCAACAACCTCATGAGAACT+AGG | + | chr4.1:29734619-29734638 | None:intergenic | 45.0% | |
| GCAACTTTGGACTTCTTAGC+AGG | + | chr4.1:29735735-29735754 | None:intergenic | 45.0% | |
| GCGATGAGACTTATTTGAGG+AGG | - | chr4.1:29735151-29735170 | MS.gene52097:CDS | 45.0% | |
| GTCATATGCAAGAGCTTAGG+AGG | - | chr4.1:29735040-29735059 | MS.gene52097:CDS | 45.0% | |
| GTGGTCATATGCAAGAGCTT+AGG | - | chr4.1:29735037-29735056 | MS.gene52097:CDS | 45.0% | |
| GTTCTCATGAGGTTGTTGCT+TGG | - | chr4.1:29734620-29734639 | MS.gene52097:CDS | 45.0% | |
| TATTGACAGAGCAACGAGGT+TGG | - | chr4.1:29734723-29734742 | MS.gene52097:CDS | 45.0% | |
| TCAAGAGGGTGGTTATGGAT+AGG | - | chr4.1:29735418-29735437 | MS.gene52097:CDS | 45.0% | |
| TCTTGCCTTCAGAGAGAGAT+GGG | + | chr4.1:29734345-29734364 | None:intergenic | 45.0% | |
| TGAAGATGGTTCTCCTGAAG+TGG | - | chr4.1:29735935-29735954 | MS.gene52097:CDS | 45.0% | |
| TGCATCTTCTGATGAGGAGA+AGG | - | chr4.1:29735875-29735894 | MS.gene52097:CDS | 45.0% | |
| TGCTGTTCCTGATGTTGCTA+AGG | - | chr4.1:29734801-29734820 | MS.gene52097:CDS | 45.0% | |
| TGTTGCTAAGATCAAGAGGG+TGG | - | chr4.1:29735407-29735426 | MS.gene52097:CDS | 45.0% | |
| TTCTTGCCTTCAGAGAGAGA+TGG | + | chr4.1:29734346-29734365 | None:intergenic | 45.0% | |
| ! | AGGGTTAGGTCTGGGATTAT+GGG | - | chr4.1:29735060-29735079 | MS.gene52097:CDS | 45.0% |
| ! | TCATGAGAACTAGGGTTAGC+AGG | + | chr4.1:29734610-29734629 | None:intergenic | 45.0% |
| ! | TGATGATTCCGGGTTTGCTT+AGG | - | chr4.1:29735265-29735284 | MS.gene52097:CDS | 45.0% |
| ! | TGCAGAGATCAGTAACGGAA+AGG | - | chr4.1:29736073-29736092 | MS.gene52097:CDS | 45.0% |
| ! | TGCTAACCCTAGTTCTCATG+AGG | - | chr4.1:29734609-29734628 | MS.gene52097:CDS | 45.0% |
| ! | TTTTGGATTTCGTGTGAGGC+TGG | - | chr4.1:29734964-29734983 | MS.gene52097:CDS | 45.0% |
| !! | AGGTTGGTGAAGTCTCAACA+AGG | - | chr4.1:29734739-29734758 | MS.gene52097:CDS | 45.0% |
| !! | ATGAGAGTACTCCTCAAGAG+TGG | - | chr4.1:29735535-29735554 | MS.gene52097:CDS | 45.0% |
| !! | CAGTTTGAGGTGTCGATTGT+AGG | + | chr4.1:29734454-29734473 | None:intergenic | 45.0% |
| !! | GGTGCTAAGTTGATGATTCC+GGG | - | chr4.1:29735255-29735274 | MS.gene52097:CDS | 45.0% |
| !! | GGTTTAGTTCTTGGTGTTGG+TGG | - | chr4.1:29735018-29735037 | MS.gene52097:CDS | 45.0% |
| !! | GTTAAGAAGGATGATGGGGA+AGG | - | chr4.1:29735669-29735688 | MS.gene52097:CDS | 45.0% |
| !!! | TGCTGGTTTTGTGGTTGTTC+TGG | + | chr4.1:29734400-29734419 | None:intergenic | 45.0% |
| !!! | TGTTGTTTTGCCTACTGGTG+GGG | - | chr4.1:29735566-29735585 | MS.gene52097:CDS | 45.0% |
| AAGGGTGAAGCTATTGCCCT+TGG | - | chr4.1:29735336-29735355 | MS.gene52097:CDS | 50.0% | |
| AGAGAGAGATGGGGACATGA+TGG | + | chr4.1:29734335-29734354 | None:intergenic | 50.0% | |
| AGCTGCTGCATCTTCTGATG+AGG | - | chr4.1:29735869-29735888 | MS.gene52097:CDS | 50.0% | |
| AGCTTAGGAGGGTTAGGTCT+GGG | - | chr4.1:29735052-29735071 | MS.gene52097:CDS | 50.0% | |
| AGTGACCAGTACGGACATTG+AGG | + | chr4.1:29734504-29734523 | None:intergenic | 50.0% | |
| ATGTCCCCATCTCTCTCTGA+AGG | - | chr4.1:29734337-29734356 | MS.gene52097:CDS | 50.0% | |
| CAGGGAAGCTGGATAAGCAT+GGG | - | chr4.1:29735505-29735524 | MS.gene52097:CDS | 50.0% | |
| CGAGCTACCTTAGCAACATC+AGG | + | chr4.1:29734811-29734830 | None:intergenic | 50.0% | |
| CTTGCCTTCAGAGAGAGATG+GGG | + | chr4.1:29734344-29734363 | None:intergenic | 50.0% | |
| GAAAGTAGATGAAGCGGCTG+TGG | - | chr4.1:29735788-29735807 | MS.gene52097:CDS | 50.0% | |
| GAAATGGGGTTTGGGTCCTA+GGG | - | chr4.1:29735455-29735474 | MS.gene52097:CDS | 50.0% | |
| GAGGAGGGTTGTTATGCCTT+TGG | - | chr4.1:29735167-29735186 | MS.gene52097:CDS | 50.0% | |
| GAGGGTTGTTATGCCTTTGG+AGG | - | chr4.1:29735170-29735189 | MS.gene52097:CDS | 50.0% | |
| GTACTCCTCAAGAGTGGATG+AGG | - | chr4.1:29735541-29735560 | MS.gene52097:CDS | 50.0% | |
| GTGAAGTCTCAACAAGGAGC+TGG | - | chr4.1:29734745-29734764 | MS.gene52097:CDS | 50.0% | |
| GTGAGGCTGGTACTTACGTT+AGG | - | chr4.1:29734977-29734996 | MS.gene52097:CDS | 50.0% | |
| TCAGCAATGGGTCGTTTGAG+AGG | + | chr4.1:29734553-29734572 | None:intergenic | 50.0% | |
| TGATATTGAACCTGGCGAGG+AGG | - | chr4.1:29735296-29735315 | MS.gene52097:CDS | 50.0% | |
| TGCAAGAGCTTAGGAGGGTT+AGG | - | chr4.1:29735046-29735065 | MS.gene52097:CDS | 50.0% | |
| TGCTGATGAAGAGGGTGAGA+AGG | - | chr4.1:29735647-29735666 | MS.gene52097:CDS | 50.0% | |
| TGGACTTCTTAGCAGGAGCA+GGG | + | chr4.1:29735728-29735747 | None:intergenic | 50.0% | |
| TTCTCAGACTTGTCCACCTC+AGG | + | chr4.1:29736014-29736033 | None:intergenic | 50.0% | |
| TTGGACTTCTTAGCAGGAGC+AGG | + | chr4.1:29735729-29735748 | None:intergenic | 50.0% | |
| ! | GAGGGTTAGGTCTGGGATTA+TGG | - | chr4.1:29735059-29735078 | MS.gene52097:CDS | 50.0% |
| ! | GTCTGGGATTATGGGTGAGA+AGG | - | chr4.1:29735068-29735087 | MS.gene52097:CDS | 50.0% |
| AGCCGCCATACCAGCAATCA+CGG | + | chr4.1:29735595-29735614 | None:intergenic | 55.0% | |
| AGGTGAGTGACCAGCTGGAA+GGG | + | chr4.1:29734533-29734552 | None:intergenic | 55.0% | |
| AGTAGATGAAGCGGCTGTGG+AGG | - | chr4.1:29735791-29735810 | MS.gene52097:CDS | 55.0% | |
| ATAAGCACAACCTCCTCGCC+AGG | + | chr4.1:29735309-29735328 | None:intergenic | 55.0% | |
| GACCAGTACGGACATTGAGG+CGG | + | chr4.1:29734501-29734520 | None:intergenic | 55.0% | |
| GAGCTTAGGAGGGTTAGGTC+TGG | - | chr4.1:29735051-29735070 | MS.gene52097:CDS | 55.0% | |
| GCAGGGAAGCTGGATAAGCA+TGG | - | chr4.1:29735504-29735523 | MS.gene52097:CDS | 55.0% | |
| GGAAATGGGGTTTGGGTCCT+AGG | - | chr4.1:29735454-29735473 | MS.gene52097:CDS | 55.0% | |
| GGACCCAAACCCCATTTCCT+TGG | + | chr4.1:29735453-29735472 | None:intergenic | 55.0% | |
| GTCGAGAAGACGGGTCATAG+TGG | - | chr4.1:29734661-29734680 | MS.gene52097:CDS | 55.0% | |
| TTGAGAGGTGAGTGACCAGC+TGG | + | chr4.1:29734538-29734557 | None:intergenic | 55.0% | |
| ! | GGGGGGTATAGTGACCAGTA+CGG | + | chr4.1:29734513-29734532 | None:intergenic | 55.0% |
| CACTATACCCCCCTTCCAGC+TGG | - | chr4.1:29734520-29734539 | MS.gene52097:CDS | 60.0% | |
| CGCCGTGATTGCTGGTATGG+CGG | - | chr4.1:29735590-29735609 | MS.gene52097:CDS | 60.0% | |
| CTGGTATGGCGGCTGCTACT+GGG | - | chr4.1:29735601-29735620 | MS.gene52097:CDS | 60.0% | |
| GACCGCCTCAATGTCCGTAC+TGG | - | chr4.1:29734496-29734515 | MS.gene52097:CDS | 60.0% | |
| GAGGTGAGTGACCAGCTGGA+AGG | + | chr4.1:29734534-29734553 | None:intergenic | 60.0% | |
| GCTGATTGCTGCAGGGAAGC+TGG | - | chr4.1:29735494-29735513 | MS.gene52097:CDS | 60.0% | |
| GGACGCCGTGATTGCTGGTA+TGG | - | chr4.1:29735587-29735606 | MS.gene52097:CDS | 60.0% | |
| GGTGAGTGACCAGCTGGAAG+GGG | + | chr4.1:29734532-29734551 | None:intergenic | 60.0% | |
| GTGAGTGACCAGCTGGAAGG+GGG | + | chr4.1:29734531-29734550 | None:intergenic | 60.0% | |
| TGAGTGACCAGCTGGAAGGG+GGG | + | chr4.1:29734530-29734549 | None:intergenic | 60.0% | |
| !! | GAGTGAAGTCGGTTCGCCTG+AGG | - | chr4.1:29735995-29736014 | MS.gene52097:CDS | 60.0% |
| !! | TGAAGTCGGTTCGCCTGAGG+TGG | - | chr4.1:29735998-29736017 | MS.gene52097:CDS | 60.0% |
| ATCACGGCGTCCCCACCAGT+AGG | + | chr4.1:29735579-29735598 | None:intergenic | 65.0% | |
| GCTGGTATGGCGGCTGCTAC+TGG | - | chr4.1:29735600-29735619 | MS.gene52097:CDS | 65.0% | |
| GGTGGGGACGCCGTGATTGC+TGG | - | chr4.1:29735582-29735601 | MS.gene52097:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 29734325 | 29736166 | 29734325 | ID=MS.gene52097 |
| chr4.1 | mRNA | 29734325 | 29736166 | 29734325 | ID=MS.gene52097.t1;Parent=MS.gene52097 |
| chr4.1 | exon | 29734325 | 29736166 | 29734325 | ID=MS.gene52097.t1.exon1;Parent=MS.gene52097.t1 |
| chr4.1 | CDS | 29734325 | 29736166 | 29734325 | ID=cds.MS.gene52097.t1;Parent=MS.gene52097.t1 |
| Gene Sequence |
| Protein sequence |
