Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057730.t1 | XP_013456513.1 | 100 | 415 | 0 | 0 | 1 | 415 | 35 | 449 | 3.70E-237 | 830.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057730.t1 | Q9LD90 | 86.6 | 411 | 52 | 2 | 1 | 411 | 28 | 435 | 2.8e-209 | 729.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057730.t1 | A0A072ULA4 | 100.0 | 415 | 0 | 0 | 1 | 415 | 35 | 449 | 2.7e-237 | 830.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene057730 | MS.gene069339 | 0.810286 | 1.24E-50 | -1.69E-46 |
| MS.gene057730 | MS.gene50962 | 0.810337 | 1.21E-50 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057730.t1 | MTR_4g074160 | 98.446 | 579 | 8 | 1 | 1 | 579 | 35 | 612 | 0.0 | 1149 |
| MS.gene057730.t1 | MTR_6g004400 | 30.348 | 201 | 106 | 5 | 46 | 212 | 346 | 546 | 6.86e-23 | 103 |
| MS.gene057730.t1 | MTR_6g004400 | 40.244 | 82 | 49 | 0 | 46 | 127 | 346 | 427 | 1.36e-11 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057730.t1 | AT3G57150 | 83.521 | 443 | 61 | 5 | 1 | 441 | 28 | 460 | 0.0 | 730 |
| MS.gene057730.t1 | AT5G14460 | 31.771 | 192 | 97 | 5 | 55 | 212 | 323 | 514 | 3.61e-23 | 103 |
Find 148 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGGGTTAGGTCTGGGATTA+TGG | 0.176925 | 4.4:+36039179 | MS.gene057730:CDS |
| AGCCGCTTCATCTACTTTCT+TGG | 0.219661 | 4.4:-36039904 | None:intergenic |
| GTTCATTTGGGTTTAGTTCT+TGG | 0.230459 | 4.4:+36039129 | MS.gene057730:CDS |
| TAGGACTATGTGTGTTCATT+TGG | 0.258261 | 4.4:+36039116 | MS.gene057730:CDS |
| AGAAACATTTAGTTGTGTTT+TGG | 0.271760 | 4.4:+36039067 | MS.gene057730:CDS |
| GATCTCTGCAGCATTATCTT+TGG | 0.294718 | 4.4:-36040180 | None:intergenic |
| GCTGGTATGGCGGCTGCTAC+TGG | 0.295017 | 4.4:+36039720 | MS.gene057730:CDS |
| ATGTCTTCACCTATTCTTCT+TGG | 0.341008 | 4.4:-36040274 | None:intergenic |
| GAGGAGGGTTGTTATGCCTT+TGG | 0.341470 | 4.4:+36039287 | MS.gene057730:CDS |
| ACTCTTGATCCTAAGGTTAC+TGG | 0.345085 | 4.4:+36038805 | MS.gene057730:CDS |
| ACCATCAACTTCAGCAACTT+TGG | 0.346981 | 4.4:-36039865 | None:intergenic |
| GGAAATGGGGTTTGGGTCCT+AGG | 0.348440 | 4.4:+36039574 | MS.gene057730:CDS |
| GGTGCTAAGTTGATGATTCC+TGG | 0.355636 | 4.4:+36039375 | MS.gene057730:CDS |
| CGTGCTCTTGAAACTTTAAC+TGG | 0.360375 | 4.4:+36038949 | MS.gene057730:CDS |
| TATGGGTGAGAAGGATAATA+TGG | 0.361091 | 4.4:+36039197 | MS.gene057730:CDS |
| CAGTTTGACGTGTCGATTGT+AGG | 0.368144 | 4.4:-36038571 | None:intergenic |
| TTTGACTAGTTATAAGAGAT+TGG | 0.369510 | 4.4:+36039317 | MS.gene057730:CDS |
| GGGATACTTATCCGAGGAAA+TGG | 0.370351 | 4.4:+36039559 | MS.gene057730:CDS |
| AGGACTATGTGTGTTCATTT+GGG | 0.370476 | 4.4:+36039117 | MS.gene057730:CDS |
| TGTCTTCACCTATTCTTCTT+GGG | 0.379511 | 4.4:-36040273 | None:intergenic |
| ATTGCTGATTATCTGAAATA+TGG | 0.384973 | 4.4:+36038685 | MS.gene057730:CDS |
| GGTGGGGACGCCGTGATTGC+TGG | 0.392518 | 4.4:+36039702 | MS.gene057730:CDS |
| TGATGATTCCTGGTTTGCTT+AGG | 0.395707 | 4.4:+36039385 | MS.gene057730:CDS |
| CAAAGATGCCCAAGAAGAAT+AGG | 0.398166 | 4.4:+36040265 | MS.gene057730:CDS |
| GGTTACTATGCATGATGTTA+TGG | 0.406717 | 4.4:+36039218 | MS.gene057730:CDS |
| TTCTCAGACTTGTCCACCTC+AGG | 0.408947 | 4.4:-36040131 | None:intergenic |
| TTATCCGAGGAAATGGGGTT+TGG | 0.409185 | 4.4:+36039566 | MS.gene057730:CDS |
| CTACAATCGACACGTCAAAC+TGG | 0.422242 | 4.4:+36038572 | MS.gene057730:CDS |
| CTGGTATGGCGGCTGCTACT+GGG | 0.423425 | 4.4:+36039721 | MS.gene057730:CDS |
| TAAGATCAAGAGGGTGGTTA+TGG | 0.424039 | 4.4:+36039533 | MS.gene057730:CDS |
| TTGGACTTCTTAGCAGGAGC+AGG | 0.428365 | 4.4:-36039846 | None:intergenic |
| AGGGTTAGGTCTGGGATTAT+GGG | 0.428508 | 4.4:+36039180 | MS.gene057730:CDS |
| GCTGATTGCTGCAGGGAAGC+TGG | 0.431749 | 4.4:+36039614 | MS.gene057730:CDS |
| TCAAGAGGGTGGTTATGGAT+AGG | 0.433226 | 4.4:+36039538 | MS.gene057730:CDS |
| GGATACTTATCCGAGGAAAT+GGG | 0.435995 | 4.4:+36039560 | MS.gene057730:CDS |
| AAGAAGAAGGATAAAGAGAA+TGG | 0.436116 | 4.4:+36039966 | MS.gene057730:CDS |
| GCTGTGAATGCTATTTGTTA+TGG | 0.437584 | 4.4:+36039354 | MS.gene057730:CDS |
| TGAGATGACTACTGCTGTTA+TGG | 0.438520 | 4.4:+36039485 | MS.gene057730:CDS |
| TATCCGAGGAAATGGGGTTT+GGG | 0.438978 | 4.4:+36039567 | MS.gene057730:CDS |
| TCTTGAGGAGTACTTTCATT+CGG | 0.440773 | 4.4:-36039651 | None:intergenic |
| AGGTGAGTGACCAGCTGGAA+GGG | 0.444423 | 4.4:-36038650 | None:intergenic |
| AGAGGGTGAGAAGGTTAAGA+AGG | 0.448672 | 4.4:+36039776 | MS.gene057730:CDS |
| TTATAAGAGATTGGTCGTTA+AGG | 0.450138 | 4.4:+36039326 | MS.gene057730:CDS |
| AGCTTAGGAGGGTTAGGTCT+GGG | 0.450353 | 4.4:+36039172 | MS.gene057730:CDS |
| CAAGAGGGTGGTTATGGATA+GGG | 0.456296 | 4.4:+36039539 | MS.gene057730:CDS |
| GCAACTTTGGACTTCTTAGC+AGG | 0.461403 | 4.4:-36039852 | None:intergenic |
| AAGAAGAAGCTGATTGCTGC+AGG | 0.463700 | 4.4:+36039606 | MS.gene057730:CDS |
| GGACGCCGTGATTGCTGGTA+TGG | 0.464126 | 4.4:+36039707 | MS.gene057730:CDS |
| CTCTTGATCCTAAGGTTACT+GGG | 0.467083 | 4.4:+36038806 | MS.gene057730:CDS |
| TTGGGTTTAGTTCTTGGTGT+TGG | 0.469171 | 4.4:+36039135 | MS.gene057730:CDS |
| GTTCTCATGAGGTTGTTGCT+TGG | 0.470108 | 4.4:+36038740 | MS.gene057730:CDS |
| TGCTGTTCCTGATGTTGCTA+AGG | 0.476360 | 4.4:+36038921 | MS.gene057730:CDS |
| TCCAAAGTTGCTGAAGTTGA+TGG | 0.479321 | 4.4:+36039864 | MS.gene057730:CDS |
| GAGGGTTGTTATGCCTTTGG+AGG | 0.479919 | 4.4:+36039290 | MS.gene057730:CDS |
| GGTTTAGTTCTTGGTGTTGG+TGG | 0.480018 | 4.4:+36039138 | MS.gene057730:CDS |
| GCAACAACCTCATGAGAACT+AGG | 0.480488 | 4.4:-36038736 | None:intergenic |
| TGCAAGAGCTTAGGAGGGTT+AGG | 0.482197 | 4.4:+36039166 | MS.gene057730:CDS |
| CAGTGGTACTCTTGATCCTA+AGG | 0.482757 | 4.4:+36038798 | MS.gene057730:CDS |
| GTCTGGGATTATGGGTGAGA+AGG | 0.485087 | 4.4:+36039188 | MS.gene057730:CDS |
| TGCTCAGTATGTTTATGATA+AGG | 0.488747 | 4.4:+36039242 | MS.gene057730:CDS |
| GAGCTTAGGAGGGTTAGGTC+TGG | 0.490050 | 4.4:+36039171 | MS.gene057730:CDS |
| TGATGAGGAGAAGGTTGAAA+AGG | 0.490781 | 4.4:+36040004 | MS.gene057730:CDS |
| AAGAGTATGTTTGTATTGCT+AGG | 0.493913 | 4.4:+36038890 | MS.gene057730:CDS |
| GAGAAGGTTAAGAAGGATGA+TGG | 0.494500 | 4.4:+36039783 | MS.gene057730:CDS |
| TCATGAGAACTAGGGTTAGC+AGG | 0.495387 | 4.4:-36038727 | None:intergenic |
| AGAAGGTTAAGAAGGATGAT+GGG | 0.497001 | 4.4:+36039784 | MS.gene057730:CDS |
| GTGAGGCTGGTACTTACGTT+AGG | 0.500342 | 4.4:+36039097 | MS.gene057730:CDS |
| GGTGAGTGACCAGCTGGAAG+GGG | 0.501707 | 4.4:-36038649 | None:intergenic |
| ATCAAATTCCCAGTAACCTT+AGG | 0.503949 | 4.4:-36038814 | None:intergenic |
| GTGAAGTCTCAACAAGGTGC+TGG | 0.505447 | 4.4:+36038865 | MS.gene057730:CDS |
| CGAGCTACCTTAGCAACATC+AGG | 0.506820 | 4.4:-36038928 | None:intergenic |
| GTCATATGCAAGAGCTTAGG+AGG | 0.508607 | 4.4:+36039160 | MS.gene057730:CDS |
| TATTCTTCGTGTCGAGAAGA+CGG | 0.508925 | 4.4:+36038771 | MS.gene057730:CDS |
| GAAAGTAGATGAAGCGGCTG+TGG | 0.509335 | 4.4:+36039908 | MS.gene057730:CDS |
| GAAATGGGGTTTGGGTCCTA+GGG | 0.510777 | 4.4:+36039575 | MS.gene057730:CDS |
| AAAGAGGTTGCTGATGAAGA+GGG | 0.510792 | 4.4:+36039759 | MS.gene057730:CDS |
| TGCTGATGAAGAGGGTGAGA+AGG | 0.511607 | 4.4:+36039767 | MS.gene057730:CDS |
| TTGAGAGGTGAGTGACCAGC+TGG | 0.515974 | 4.4:-36038655 | None:intergenic |
| ATTCTTCGTGTCGAGAAGAC+GGG | 0.516109 | 4.4:+36038772 | MS.gene057730:CDS |
| GTTATGGCTACTTGTGATCA+TGG | 0.518206 | 4.4:+36039501 | MS.gene057730:CDS |
| AGAGCGATGAGACTTATTTG+AGG | 0.518362 | 4.4:+36039268 | MS.gene057730:CDS |
| GTGGTCATATGCAAGAGCTT+AGG | 0.520527 | 4.4:+36039157 | MS.gene057730:CDS |
| GACCGTCTCAATGTCCGTAC+TGG | 0.525181 | 4.4:+36038616 | MS.gene057730:CDS |
| GTACTCCTCAAGAGTGGATG+AGG | 0.525760 | 4.4:+36039661 | MS.gene057730:CDS |
| CGATGAGACTTATTTGAGGA+GGG | 0.530709 | 4.4:+36039272 | MS.gene057730:CDS |
| TATTTCAGATAATCAGCAAT+GGG | 0.541396 | 4.4:-36038682 | None:intergenic |
| TTCTCAAACCTAAGCAAACC+AGG | 0.544985 | 4.4:-36039393 | None:intergenic |
| TGAAGTCGGTTCGCCTGAGG+TGG | 0.545768 | 4.4:+36040118 | MS.gene057730:CDS |
| TGCATCTTCTGATGAGGAGA+AGG | 0.555918 | 4.4:+36039995 | MS.gene057730:CDS |
| AGCCGCCATACCAGCAATCA+CGG | 0.555963 | 4.4:-36039712 | None:intergenic |
| GTGAGTGACCAGCTGGAAGG+GGG | 0.556834 | 4.4:-36038648 | None:intergenic |
| TGAAGGTGGTTCTCCTGAAG+TGG | 0.558835 | 4.4:+36040055 | MS.gene057730:CDS |
| AAGGGTGAAGCTATTGCCCT+TGG | 0.558857 | 4.4:+36039456 | MS.gene057730:CDS |
| TTAAGAAGGATGATGGGGAA+GGG | 0.559638 | 4.4:+36039790 | MS.gene057730:CDS |
| GGACCCAAACCCCATTTCCT+CGG | 0.561902 | 4.4:-36039570 | None:intergenic |
| GTTAAGAAGGATGATGGGGA+AGG | 0.562363 | 4.4:+36039789 | MS.gene057730:CDS |
| GACCAAGAAAGTAGATGAAG+CGG | 0.563615 | 4.4:+36039902 | MS.gene057730:CDS |
| CTGCTGTTAAGAGACAACTT+AGG | 0.565713 | 4.4:+36039001 | MS.gene057730:CDS |
| AGTAGATGAAGCGGCTGTGG+AGG | 0.570309 | 4.4:+36039911 | MS.gene057730:CDS |
| TGGACTTCTTAGCAGGAGCA+GGG | 0.572350 | 4.4:-36039845 | None:intergenic |
| GCAGGGAAGCTGGATAAGCA+TGG | 0.572801 | 4.4:+36039624 | MS.gene057730:CDS |
| CGCCGTGATTGCTGGTATGG+CGG | 0.577954 | 4.4:+36039710 | MS.gene057730:CDS |
| TTCTTCTTCATAGAAGCCCT+AGG | 0.578222 | 4.4:-36039591 | None:intergenic |
| ATAAGCACAACCTCCTCACC+AGG | 0.579419 | 4.4:-36039426 | None:intergenic |
| CACAAGGAAACGAGTGAAGT+CGG | 0.580195 | 4.4:+36040104 | MS.gene057730:CDS |
| GCGATGAGACTTATTTGAGG+AGG | 0.584233 | 4.4:+36039271 | MS.gene057730:CDS |
| AAGGGCAATAGCTTCACCCT+TGG | 0.584541 | 4.4:-36039454 | None:intergenic |
| CAGGGAAGCTGGATAAGCAT+GGG | 0.585096 | 4.4:+36039625 | MS.gene057730:CDS |
| TCAGCAATGGGTCGTTTGAG+AGG | 0.590490 | 4.4:-36038670 | None:intergenic |
| GAAAGAGGTTGCTGATGAAG+AGG | 0.591372 | 4.4:+36039758 | MS.gene057730:CDS |
| GAGGTGAGTGACCAGCTGGA+AGG | 0.595183 | 4.4:-36038651 | None:intergenic |
| CACAAGGAAAAGGGTGAAGG+TGG | 0.596642 | 4.4:+36040041 | MS.gene057730:CDS |
| ACATTCCTCATCCACTCTTG+AGG | 0.608152 | 4.4:-36039666 | None:intergenic |
| GAAGGTTAAGAAGGATGATG+GGG | 0.610370 | 4.4:+36039785 | MS.gene057730:CDS |
| CTAGTCAAAAGAACCTCCAA+AGG | 0.615878 | 4.4:-36039303 | None:intergenic |
| TGAGTGACCAGCTGGAAGGG+GGG | 0.617538 | 4.4:-36038647 | None:intergenic |
| GATACTTATCCGAGGAAATG+GGG | 0.621162 | 4.4:+36039561 | MS.gene057730:CDS |
| GACCAGTACGGACATTGAGA+CGG | 0.621256 | 4.4:-36038618 | None:intergenic |
| TATTGACAGAGCAACAAGGT+TGG | 0.622420 | 4.4:+36038843 | MS.gene057730:CDS |
| CTCTTAACAGCAGAAATCAA+AGG | 0.625059 | 4.4:-36038991 | None:intergenic |
| ATATTTCAGATAATCAGCAA+TGG | 0.627850 | 4.4:-36038683 | None:intergenic |
| TGCAGAGATCAGTAACGGAA+AGG | 0.627993 | 4.4:+36040193 | MS.gene057730:CDS |
| ATGAAAGTACTCCTCAAGAG+TGG | 0.631391 | 4.4:+36039655 | MS.gene057730:CDS |
| GTATTGTTGCTAAGATCAAG+AGG | 0.631960 | 4.4:+36039523 | MS.gene057730:CDS |
| CAACAACCTCATGAGAACTA+GGG | 0.632219 | 4.4:-36038735 | None:intergenic |
| GAGTGAAGTCGGTTCGCCTG+AGG | 0.633165 | 4.4:+36040115 | MS.gene057730:CDS |
| AAGCACAAGGAAAAGGGTGA+AGG | 0.635412 | 4.4:+36040038 | MS.gene057730:CDS |
| TGCTAACCCTAGTTCTCATG+AGG | 0.636176 | 4.4:+36038729 | MS.gene057730:CDS |
| AATGCTGCAGAGATCAGTAA+CGG | 0.637087 | 4.4:+36040188 | MS.gene057730:CDS |
| TAGTCATCTCAGCAATACCA+AGG | 0.640655 | 4.4:-36039473 | None:intergenic |
| AGCTGCTGCATCTTCTGATG+AGG | 0.641491 | 4.4:+36039989 | MS.gene057730:CDS |
| GACTGAAGATGTGAAGAAAG+AGG | 0.647185 | 4.4:+36039743 | MS.gene057730:CDS |
| TTTGAGAATGATATTGAACC+TGG | 0.653930 | 4.4:+36039408 | MS.gene057730:CDS |
| TTAACAGCAGAAATCAAAGG+TGG | 0.656440 | 4.4:-36038988 | None:intergenic |
| AGAAGAAGCTGATTGCTGCA+GGG | 0.658320 | 4.4:+36039607 | MS.gene057730:CDS |
| GGTTGTGCTTATGACTACCA+AGG | 0.659102 | 4.4:+36039437 | MS.gene057730:CDS |
| TGTTGCTAAGATCAAGAGGG+TGG | 0.661471 | 4.4:+36039527 | MS.gene057730:CDS |
| GAATGATATTGAACCTGGTG+AGG | 0.674019 | 4.4:+36039413 | MS.gene057730:CDS |
| ATCACGGCGTCCCCACCAGT+AGG | 0.679551 | 4.4:-36039696 | None:intergenic |
| AGTCATCTCAGCAATACCAA+GGG | 0.685774 | 4.4:-36039472 | None:intergenic |
| TGATATTGAACCTGGTGAGG+AGG | 0.686276 | 4.4:+36039416 | MS.gene057730:CDS |
| TTTGTATTGACAGAGCAACA+AGG | 0.689194 | 4.4:+36038839 | MS.gene057730:CDS |
| GTTGTGCTTATGACTACCAA+GGG | 0.691718 | 4.4:+36039438 | MS.gene057730:CDS |
| TATTGTTGCTAAGATCAAGA+GGG | 0.700862 | 4.4:+36039524 | MS.gene057730:CDS |
| AGGTTGGTGAAGTCTCAACA+AGG | 0.706918 | 4.4:+36038859 | MS.gene057730:CDS |
| TGGATAGGGATACTTATCCG+AGG | 0.711704 | 4.4:+36039553 | MS.gene057730:CDS |
| TCATATGCAAGAGCTTAGGA+GGG | 0.728673 | 4.4:+36039161 | MS.gene057730:CDS |
| GTCGAGAAGACGGGTCACAG+TGG | 0.744339 | 4.4:+36038781 | MS.gene057730:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AAAGAAGAAGAAAAAGAAGA+AGG | + | chr4.4:36039953-36039972 | MS.gene057730:CDS | 25.0% |
| ! | ATATTTCAGATAATCAGCAA+TGG | - | chr4.4:36038686-36038705 | None:intergenic | 25.0% |
| ! | TATTTCAGATAATCAGCAAT+GGG | - | chr4.4:36038685-36038704 | None:intergenic | 25.0% |
| !! | AGAAACATTTAGTTGTGTTT+TGG | + | chr4.4:36039067-36039086 | MS.gene057730:CDS | 25.0% |
| !! | ATTGCTGATTATCTGAAATA+TGG | + | chr4.4:36038685-36038704 | MS.gene057730:CDS | 25.0% |
| !! | TTTGACTAGTTATAAGAGAT+TGG | + | chr4.4:36039317-36039336 | MS.gene057730:CDS | 25.0% |
| !!! | TCGTAGTTTTTCAACAAAAT+GGG | - | chr4.4:36038598-36038617 | None:intergenic | 25.0% |
| AAGAAGAAGGATAAAGAGAA+TGG | + | chr4.4:36039966-36039985 | MS.gene057730:CDS | 30.0% | |
| TATTGTTGCTAAGATCAAGA+GGG | + | chr4.4:36039524-36039543 | MS.gene057730:CDS | 30.0% | |
| TGCTCAGTATGTTTATGATA+AGG | + | chr4.4:36039242-36039261 | MS.gene057730:CDS | 30.0% | |
| TTTGAGAATGATATTGAACC+TGG | + | chr4.4:36039408-36039427 | MS.gene057730:CDS | 30.0% | |
| ! | AAAAAGAAGCACAAGGAAAA+GGG | + | chr4.4:36040032-36040051 | MS.gene057730:CDS | 30.0% |
| ! | AAGAGTATGTTTGTATTGCT+AGG | + | chr4.4:36038890-36038909 | MS.gene057730:CDS | 30.0% |
| ! | TTATAAGAGATTGGTCGTTA+AGG | + | chr4.4:36039326-36039345 | MS.gene057730:CDS | 30.0% |
| !! | GTCGTAGTTTTTCAACAAAA+TGG | - | chr4.4:36038599-36038618 | None:intergenic | 30.0% |
| !!! | ATTGTAGGTGTTAGTTTTTC+AGG | - | chr4.4:36038559-36038578 | None:intergenic | 30.0% |
| AGAAGGTTAAGAAGGATGAT+GGG | + | chr4.4:36039784-36039803 | MS.gene057730:CDS | 35.0% | |
| AGGACTATGTGTGTTCATTT+GGG | + | chr4.4:36039117-36039136 | MS.gene057730:CDS | 35.0% | |
| ATCAAATTCCCAGTAACCTT+AGG | - | chr4.4:36038817-36038836 | None:intergenic | 35.0% | |
| CTCTTAACAGCAGAAATCAA+AGG | - | chr4.4:36038994-36039013 | None:intergenic | 35.0% | |
| GGTTACTATGCATGATGTTA+TGG | + | chr4.4:36039218-36039237 | MS.gene057730:CDS | 35.0% | |
| GTATTGTTGCTAAGATCAAG+AGG | + | chr4.4:36039523-36039542 | MS.gene057730:CDS | 35.0% | |
| TAGGACTATGTGTGTTCATT+TGG | + | chr4.4:36039116-36039135 | MS.gene057730:CDS | 35.0% | |
| TATGGGTGAGAAGGATAATA+TGG | + | chr4.4:36039197-36039216 | MS.gene057730:CDS | 35.0% | |
| TTAACAGCAGAAATCAAAGG+TGG | - | chr4.4:36038991-36039010 | None:intergenic | 35.0% | |
| ! | GAAAAAGAAGCACAAGGAAA+AGG | + | chr4.4:36040031-36040050 | MS.gene057730:CDS | 35.0% |
| ! | GAAGAAGAAAAAGAAGCACA+AGG | + | chr4.4:36040088-36040107 | MS.gene057730:CDS | 35.0% |
| ! | GCTGTGAATGCTATTTGTTA+TGG | + | chr4.4:36039354-36039373 | MS.gene057730:CDS | 35.0% |
| ! | TTTGTATTGACAGAGCAACA+AGG | + | chr4.4:36038839-36038858 | MS.gene057730:CDS | 35.0% |
| !! | GTTCATTTGGGTTTAGTTCT+TGG | + | chr4.4:36039129-36039148 | MS.gene057730:CDS | 35.0% |
| !! | TCTTGAGGAGTACTTTCATT+CGG | - | chr4.4:36039654-36039673 | None:intergenic | 35.0% |
| !!! | AATGTTGTTTTACCTACTGG+TGG | + | chr4.4:36039684-36039703 | MS.gene057730:CDS | 35.0% |
| !!! | AGGAATGTTGTTTTACCTAC+TGG | + | chr4.4:36039681-36039700 | MS.gene057730:CDS | 35.0% |
| !!! | ATGTTGTTTTACCTACTGGT+GGG | + | chr4.4:36039685-36039704 | MS.gene057730:CDS | 35.0% |
| AAAGAGGTTGCTGATGAAGA+GGG | + | chr4.4:36039759-36039778 | MS.gene057730:CDS | 40.0% | |
| AATGCTGCAGAGATCAGTAA+CGG | + | chr4.4:36040188-36040207 | MS.gene057730:CDS | 40.0% | |
| ACCATCAACTTCAGCAACTT+TGG | - | chr4.4:36039868-36039887 | None:intergenic | 40.0% | |
| ACTCTTGATCCTAAGGTTAC+TGG | + | chr4.4:36038805-36038824 | MS.gene057730:CDS | 40.0% | |
| AGAGCGATGAGACTTATTTG+AGG | + | chr4.4:36039268-36039287 | MS.gene057730:CDS | 40.0% | |
| AGTCATCTCAGCAATACCAA+GGG | - | chr4.4:36039475-36039494 | None:intergenic | 40.0% | |
| CAACAACCTCATGAGAACTA+GGG | - | chr4.4:36038738-36038757 | None:intergenic | 40.0% | |
| CGATGAGACTTATTTGAGGA+GGG | + | chr4.4:36039272-36039291 | MS.gene057730:CDS | 40.0% | |
| CGTGCTCTTGAAACTTTAAC+TGG | + | chr4.4:36038949-36038968 | MS.gene057730:CDS | 40.0% | |
| CTAGTCAAAAGAACCTCCAA+AGG | - | chr4.4:36039306-36039325 | None:intergenic | 40.0% | |
| CTCTTGATCCTAAGGTTACT+GGG | + | chr4.4:36038806-36038825 | MS.gene057730:CDS | 40.0% | |
| CTGCTGTTAAGAGACAACTT+AGG | + | chr4.4:36039001-36039020 | MS.gene057730:CDS | 40.0% | |
| GAAGGTTAAGAAGGATGATG+GGG | + | chr4.4:36039785-36039804 | MS.gene057730:CDS | 40.0% | |
| GAATGATATTGAACCTGGTG+AGG | + | chr4.4:36039413-36039432 | MS.gene057730:CDS | 40.0% | |
| GACCAAGAAAGTAGATGAAG+CGG | + | chr4.4:36039902-36039921 | MS.gene057730:CDS | 40.0% | |
| GACTGAAGATGTGAAGAAAG+AGG | + | chr4.4:36039743-36039762 | MS.gene057730:CDS | 40.0% | |
| GAGAAGGTTAAGAAGGATGA+TGG | + | chr4.4:36039783-36039802 | MS.gene057730:CDS | 40.0% | |
| GATACTTATCCGAGGAAATG+GGG | + | chr4.4:36039561-36039580 | MS.gene057730:CDS | 40.0% | |
| GATCTCTGCAGCATTATCTT+TGG | - | chr4.4:36040183-36040202 | None:intergenic | 40.0% | |
| GGATACTTATCCGAGGAAAT+GGG | + | chr4.4:36039560-36039579 | MS.gene057730:CDS | 40.0% | |
| GTTATGGCTACTTGTGATCA+TGG | + | chr4.4:36039501-36039520 | MS.gene057730:CDS | 40.0% | |
| GTTGTGCTTATGACTACCAA+GGG | + | chr4.4:36039438-36039457 | MS.gene057730:CDS | 40.0% | |
| TAAGATCAAGAGGGTGGTTA+TGG | + | chr4.4:36039533-36039552 | MS.gene057730:CDS | 40.0% | |
| TAGTCATCTCAGCAATACCA+AGG | - | chr4.4:36039476-36039495 | None:intergenic | 40.0% | |
| TATTCTTCGTGTCGAGAAGA+CGG | + | chr4.4:36038771-36038790 | MS.gene057730:CDS | 40.0% | |
| TATTGACAGAGCAACAAGGT+TGG | + | chr4.4:36038843-36038862 | MS.gene057730:CDS | 40.0% | |
| TCATATGCAAGAGCTTAGGA+GGG | + | chr4.4:36039161-36039180 | MS.gene057730:CDS | 40.0% | |
| TCCAAAGTTGCTGAAGTTGA+TGG | + | chr4.4:36039864-36039883 | MS.gene057730:CDS | 40.0% | |
| TGAGATGACTACTGCTGTTA+TGG | + | chr4.4:36039485-36039504 | MS.gene057730:CDS | 40.0% | |
| TGATGAGGAGAAGGTTGAAA+AGG | + | chr4.4:36040004-36040023 | MS.gene057730:CDS | 40.0% | |
| TTCTCAAACCTAAGCAAACC+AGG | - | chr4.4:36039396-36039415 | None:intergenic | 40.0% | |
| TTCTTCTTCATAGAAGCCCT+AGG | - | chr4.4:36039594-36039613 | None:intergenic | 40.0% | |
| ! | GGAGAAGAAAAAGAAGCACA+AGG | + | chr4.4:36040025-36040044 | MS.gene057730:CDS | 40.0% |
| ! | TTCTCAGACTTTTCCACTTC+AGG | - | chr4.4:36040071-36040090 | None:intergenic | 40.0% |
| !! | ATGAAAGTACTCCTCAAGAG+TGG | + | chr4.4:36039655-36039674 | MS.gene057730:CDS | 40.0% |
| !! | TGATGATTCCTGGTTTGCTT+AGG | + | chr4.4:36039385-36039404 | MS.gene057730:CDS | 40.0% |
| !! | TGTGTTTTGGATTTCGTGTG+AGG | + | chr4.4:36039080-36039099 | MS.gene057730:CDS | 40.0% |
| !! | TTAAGAAGGATGATGGGGAA+GGG | + | chr4.4:36039790-36039809 | MS.gene057730:CDS | 40.0% |
| !! | TTGGGTTTAGTTCTTGGTGT+TGG | + | chr4.4:36039135-36039154 | MS.gene057730:CDS | 40.0% |
| !!! | TGTTGTTTTACCTACTGGTG+GGG | + | chr4.4:36039686-36039705 | MS.gene057730:CDS | 40.0% |
| AAGAAGAAGCTGATTGCTGC+AGG | + | chr4.4:36039606-36039625 | MS.gene057730:CDS | 45.0% | |
| AAGCACAAGGAAAAGGGTGA+AGG | + | chr4.4:36040038-36040057 | MS.gene057730:CDS | 45.0% | |
| ACATTCCTCATCCACTCTTG+AGG | - | chr4.4:36039669-36039688 | None:intergenic | 45.0% | |
| AGAAGAAGCTGATTGCTGCA+GGG | + | chr4.4:36039607-36039626 | MS.gene057730:CDS | 45.0% | |
| AGAGGGTGAGAAGGTTAAGA+AGG | + | chr4.4:36039776-36039795 | MS.gene057730:CDS | 45.0% | |
| AGCCGCTTCATCTACTTTCT+TGG | - | chr4.4:36039907-36039926 | None:intergenic | 45.0% | |
| ATTCTTCGTGTCGAGAAGAC+GGG | + | chr4.4:36038772-36038791 | MS.gene057730:CDS | 45.0% | |
| CAAGAGGGTGGTTATGGATA+GGG | + | chr4.4:36039539-36039558 | MS.gene057730:CDS | 45.0% | |
| CACAAGGAAACGAGTGAAGT+CGG | + | chr4.4:36040104-36040123 | MS.gene057730:CDS | 45.0% | |
| CAGTGGTACTCTTGATCCTA+AGG | + | chr4.4:36038798-36038817 | MS.gene057730:CDS | 45.0% | |
| CTACAATCGACACGTCAAAC+TGG | + | chr4.4:36038572-36038591 | MS.gene057730:CDS | 45.0% | |
| GAAAGAGGTTGCTGATGAAG+AGG | + | chr4.4:36039758-36039777 | MS.gene057730:CDS | 45.0% | |
| GCAACAACCTCATGAGAACT+AGG | - | chr4.4:36038739-36038758 | None:intergenic | 45.0% | |
| GCAACTTTGGACTTCTTAGC+AGG | - | chr4.4:36039855-36039874 | None:intergenic | 45.0% | |
| GCGATGAGACTTATTTGAGG+AGG | + | chr4.4:36039271-36039290 | MS.gene057730:CDS | 45.0% | |
| GGGATACTTATCCGAGGAAA+TGG | + | chr4.4:36039559-36039578 | MS.gene057730:CDS | 45.0% | |
| GGTTGTGCTTATGACTACCA+AGG | + | chr4.4:36039437-36039456 | MS.gene057730:CDS | 45.0% | |
| GTCATATGCAAGAGCTTAGG+AGG | + | chr4.4:36039160-36039179 | MS.gene057730:CDS | 45.0% | |
| GTGGTCATATGCAAGAGCTT+AGG | + | chr4.4:36039157-36039176 | MS.gene057730:CDS | 45.0% | |
| GTTCTCATGAGGTTGTTGCT+TGG | + | chr4.4:36038740-36038759 | MS.gene057730:CDS | 45.0% | |
| TATCCGAGGAAATGGGGTTT+GGG | + | chr4.4:36039567-36039586 | MS.gene057730:CDS | 45.0% | |
| TCAAGAGGGTGGTTATGGAT+AGG | + | chr4.4:36039538-36039557 | MS.gene057730:CDS | 45.0% | |
| TGATATTGAACCTGGTGAGG+AGG | + | chr4.4:36039416-36039435 | MS.gene057730:CDS | 45.0% | |
| TGCATCTTCTGATGAGGAGA+AGG | + | chr4.4:36039995-36040014 | MS.gene057730:CDS | 45.0% | |
| TGCTGTTCCTGATGTTGCTA+AGG | + | chr4.4:36038921-36038940 | MS.gene057730:CDS | 45.0% | |
| TGGATAGGGATACTTATCCG+AGG | + | chr4.4:36039553-36039572 | MS.gene057730:CDS | 45.0% | |
| TGTTGCTAAGATCAAGAGGG+TGG | + | chr4.4:36039527-36039546 | MS.gene057730:CDS | 45.0% | |
| TTATCCGAGGAAATGGGGTT+TGG | + | chr4.4:36039566-36039585 | MS.gene057730:CDS | 45.0% | |
| ! | AGGGTTAGGTCTGGGATTAT+GGG | + | chr4.4:36039180-36039199 | MS.gene057730:CDS | 45.0% |
| ! | TCATGAGAACTAGGGTTAGC+AGG | - | chr4.4:36038730-36038749 | None:intergenic | 45.0% |
| ! | TGCAGAGATCAGTAACGGAA+AGG | + | chr4.4:36040193-36040212 | MS.gene057730:CDS | 45.0% |
| ! | TGCTAACCCTAGTTCTCATG+AGG | + | chr4.4:36038729-36038748 | MS.gene057730:CDS | 45.0% |
| ! | TTTTGGATTTCGTGTGAGGC+TGG | + | chr4.4:36039084-36039103 | MS.gene057730:CDS | 45.0% |
| !! | AGGTTGGTGAAGTCTCAACA+AGG | + | chr4.4:36038859-36038878 | MS.gene057730:CDS | 45.0% |
| !! | CAGTTTGACGTGTCGATTGT+AGG | - | chr4.4:36038574-36038593 | None:intergenic | 45.0% |
| !! | GGTGCTAAGTTGATGATTCC+TGG | + | chr4.4:36039375-36039394 | MS.gene057730:CDS | 45.0% |
| !! | GGTTTAGTTCTTGGTGTTGG+TGG | + | chr4.4:36039138-36039157 | MS.gene057730:CDS | 45.0% |
| !! | GTTAAGAAGGATGATGGGGA+AGG | + | chr4.4:36039789-36039808 | MS.gene057730:CDS | 45.0% |
| AAGGGCAATAGCTTCACCCT+TGG | - | chr4.4:36039457-36039476 | None:intergenic | 50.0% | |
| AAGGGTGAAGCTATTGCCCT+TGG | + | chr4.4:36039456-36039475 | MS.gene057730:CDS | 50.0% | |
| AGCTGCTGCATCTTCTGATG+AGG | + | chr4.4:36039989-36040008 | MS.gene057730:CDS | 50.0% | |
| AGCTTAGGAGGGTTAGGTCT+GGG | + | chr4.4:36039172-36039191 | MS.gene057730:CDS | 50.0% | |
| ATAAGCACAACCTCCTCACC+AGG | - | chr4.4:36039429-36039448 | None:intergenic | 50.0% | |
| CACAAGGAAAAGGGTGAAGG+TGG | + | chr4.4:36040041-36040060 | MS.gene057730:CDS | 50.0% | |
| CAGGGAAGCTGGATAAGCAT+GGG | + | chr4.4:36039625-36039644 | MS.gene057730:CDS | 50.0% | |
| CGAGCTACCTTAGCAACATC+AGG | - | chr4.4:36038931-36038950 | None:intergenic | 50.0% | |
| GAAAGTAGATGAAGCGGCTG+TGG | + | chr4.4:36039908-36039927 | MS.gene057730:CDS | 50.0% | |
| GAAATGGGGTTTGGGTCCTA+GGG | + | chr4.4:36039575-36039594 | MS.gene057730:CDS | 50.0% | |
| GACCAGTACGGACATTGAGA+CGG | - | chr4.4:36038621-36038640 | None:intergenic | 50.0% | |
| GAGGAGGGTTGTTATGCCTT+TGG | + | chr4.4:36039287-36039306 | MS.gene057730:CDS | 50.0% | |
| GAGGGTTGTTATGCCTTTGG+AGG | + | chr4.4:36039290-36039309 | MS.gene057730:CDS | 50.0% | |
| GTACTCCTCAAGAGTGGATG+AGG | + | chr4.4:36039661-36039680 | MS.gene057730:CDS | 50.0% | |
| GTGAAGTCTCAACAAGGTGC+TGG | + | chr4.4:36038865-36038884 | MS.gene057730:CDS | 50.0% | |
| GTGAGGCTGGTACTTACGTT+AGG | + | chr4.4:36039097-36039116 | MS.gene057730:CDS | 50.0% | |
| TCAGCAATGGGTCGTTTGAG+AGG | - | chr4.4:36038673-36038692 | None:intergenic | 50.0% | |
| TGAAGGTGGTTCTCCTGAAG+TGG | + | chr4.4:36040055-36040074 | MS.gene057730:CDS | 50.0% | |
| TGCAAGAGCTTAGGAGGGTT+AGG | + | chr4.4:36039166-36039185 | MS.gene057730:CDS | 50.0% | |
| TGCTGATGAAGAGGGTGAGA+AGG | + | chr4.4:36039767-36039786 | MS.gene057730:CDS | 50.0% | |
| TGGACTTCTTAGCAGGAGCA+GGG | - | chr4.4:36039848-36039867 | None:intergenic | 50.0% | |
| TTCTCAGACTTGTCCACCTC+AGG | - | chr4.4:36040134-36040153 | None:intergenic | 50.0% | |
| TTGGACTTCTTAGCAGGAGC+AGG | - | chr4.4:36039849-36039868 | None:intergenic | 50.0% | |
| ! | GAGGGTTAGGTCTGGGATTA+TGG | + | chr4.4:36039179-36039198 | MS.gene057730:CDS | 50.0% |
| ! | GTCTGGGATTATGGGTGAGA+AGG | + | chr4.4:36039188-36039207 | MS.gene057730:CDS | 50.0% |
| AGCCGCCATACCAGCAATCA+CGG | - | chr4.4:36039715-36039734 | None:intergenic | 55.0% | |
| AGGTGAGTGACCAGCTGGAA+GGG | - | chr4.4:36038653-36038672 | None:intergenic | 55.0% | |
| AGTAGATGAAGCGGCTGTGG+AGG | + | chr4.4:36039911-36039930 | MS.gene057730:CDS | 55.0% | |
| GACCGTCTCAATGTCCGTAC+TGG | + | chr4.4:36038616-36038635 | MS.gene057730:CDS | 55.0% | |
| GAGCTTAGGAGGGTTAGGTC+TGG | + | chr4.4:36039171-36039190 | MS.gene057730:CDS | 55.0% | |
| GCAGGGAAGCTGGATAAGCA+TGG | + | chr4.4:36039624-36039643 | MS.gene057730:CDS | 55.0% | |
| GGAAATGGGGTTTGGGTCCT+AGG | + | chr4.4:36039574-36039593 | MS.gene057730:CDS | 55.0% | |
| GGACCCAAACCCCATTTCCT+CGG | - | chr4.4:36039573-36039592 | None:intergenic | 55.0% | |
| TTGAGAGGTGAGTGACCAGC+TGG | - | chr4.4:36038658-36038677 | None:intergenic | 55.0% | |
| ! | GGGGGGTATAGTGACCAGTA+CGG | - | chr4.4:36038633-36038652 | None:intergenic | 55.0% |
| CACTATACCCCCCTTCCAGC+TGG | + | chr4.4:36038640-36038659 | MS.gene057730:CDS | 60.0% | |
| CGCCGTGATTGCTGGTATGG+CGG | + | chr4.4:36039710-36039729 | MS.gene057730:CDS | 60.0% | |
| CTGGTATGGCGGCTGCTACT+GGG | + | chr4.4:36039721-36039740 | MS.gene057730:CDS | 60.0% | |
| GAGGTGAGTGACCAGCTGGA+AGG | - | chr4.4:36038654-36038673 | None:intergenic | 60.0% | |
| GCTGATTGCTGCAGGGAAGC+TGG | + | chr4.4:36039614-36039633 | MS.gene057730:CDS | 60.0% | |
| GGACGCCGTGATTGCTGGTA+TGG | + | chr4.4:36039707-36039726 | MS.gene057730:CDS | 60.0% | |
| GGTGAGTGACCAGCTGGAAG+GGG | - | chr4.4:36038652-36038671 | None:intergenic | 60.0% | |
| GTCGAGAAGACGGGTCACAG+TGG | + | chr4.4:36038781-36038800 | MS.gene057730:CDS | 60.0% | |
| GTGAGTGACCAGCTGGAAGG+GGG | - | chr4.4:36038651-36038670 | None:intergenic | 60.0% | |
| TGAGTGACCAGCTGGAAGGG+GGG | - | chr4.4:36038650-36038669 | None:intergenic | 60.0% | |
| !! | GAGTGAAGTCGGTTCGCCTG+AGG | + | chr4.4:36040115-36040134 | MS.gene057730:CDS | 60.0% |
| !! | TGAAGTCGGTTCGCCTGAGG+TGG | + | chr4.4:36040118-36040137 | MS.gene057730:CDS | 60.0% |
| ATCACGGCGTCCCCACCAGT+AGG | - | chr4.4:36039699-36039718 | None:intergenic | 65.0% | |
| GCTGGTATGGCGGCTGCTAC+TGG | + | chr4.4:36039720-36039739 | MS.gene057730:CDS | 65.0% | |
| GGTGGGGACGCCGTGATTGC+TGG | + | chr4.4:36039702-36039721 | MS.gene057730:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 36038547 | 36040286 | 36038547 | ID=MS.gene057730 |
| chr4.4 | mRNA | 36038547 | 36040286 | 36038547 | ID=MS.gene057730.t1;Parent=MS.gene057730 |
| chr4.4 | exon | 36038547 | 36040286 | 36038547 | ID=MS.gene057730.t1.exon1;Parent=MS.gene057730.t1 |
| chr4.4 | CDS | 36038547 | 36040286 | 36038547 | ID=cds.MS.gene057730.t1;Parent=MS.gene057730.t1 |
| Gene Sequence |
| Protein sequence |
