AlfalfaGEDB | MS.gene057730

M. sativa cultivar XinJiangDaYe / MS.gene057730

KEGG: K11131
GO: GO:0001522 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0005488 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009982 GO:0009987 GO:0016070 GO:0016853 GO:0016866 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363
PFAM: PF01472.23 PF01509.21 PF08068.15 PF16198.8

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene057730.t1	XP_013456513.1	100	415	0	0	1	415	35	449	3.70E-237	830.9

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene057730.t1	Q9LD90	86.6	411	52	2	1	411	28	435	2.8e-209	729.6

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene057730.t1	A0A072ULA4	100.0	415	0	0	1	415	35	449	2.7e-237	830.9

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene057730	MS.gene069339	0.810286	1.24E-50	-1.69E-46
MS.gene057730	MS.gene50962	0.810337	1.21E-50	-1.69E-46

Showing 1 to 2 of 2 entries

Previous1Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
MS.gene002015	MS.gene057730	PPI
MS.gene002016	MS.gene057730	PPI
MS.gene003452	MS.gene057730	PPI
MS.gene003490	MS.gene057730	PPI
MS.gene003492	MS.gene057730	PPI
MS.gene003693	MS.gene057730	PPI
MS.gene003846	MS.gene057730	PPI
MS.gene004704	MS.gene057730	PPI
MS.gene004705	MS.gene057730	PPI
MS.gene00589	MS.gene057730	PPI

Showing 1 to 10 of 154 entries

Previous1 2 3 4 5…16Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene057730.t1	MTR_4g074160	98.446	579	8	1	1	579	35	612	0.0	1149
MS.gene057730.t1	MTR_6g004400	30.348	201	106	5	46	212	346	546	6.86e-23	103
MS.gene057730.t1	MTR_6g004400	40.244	82	49	0	46	127	346	427	1.36e-11	67.4

Showing 1 to 3 of 3 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene057730.t1	AT3G57150	83.521	443	61	5	1	441	28	460	0.0	730
MS.gene057730.t1	AT5G14460	31.771	192	97	5	55	212	323	514	3.61e-23	103

Showing 1 to 2 of 2 entries

Previous1Next

Find 148 sgRNAs with CRISPR-Local

Find 162 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAGGTTGCTGATGAAGA+GGG	0.510792	4.4:+36039759	MS.gene057730:CDS
AAGAAGAAGCTGATTGCTGC+AGG	0.463700	4.4:+36039606	MS.gene057730:CDS
AAGAAGAAGGATAAAGAGAA+TGG	0.436116	4.4:+36039966	MS.gene057730:CDS
AAGAGTATGTTTGTATTGCT+AGG	0.493913	4.4:+36038890	MS.gene057730:CDS
AAGCACAAGGAAAAGGGTGA+AGG	0.635412	4.4:+36040038	MS.gene057730:CDS
AAGGGCAATAGCTTCACCCT+TGG	0.584541	4.4:-36039454	None:intergenic
AAGGGTGAAGCTATTGCCCT+TGG	0.558857	4.4:+36039456	MS.gene057730:CDS
AATGCTGCAGAGATCAGTAA+CGG	0.637087	4.4:+36040188	MS.gene057730:CDS
ACATTCCTCATCCACTCTTG+AGG	0.608152	4.4:-36039666	None:intergenic
ACCATCAACTTCAGCAACTT+TGG	0.346981	4.4:-36039865	None:intergenic

Showing 1 to 10 of 148 entries

Previous1 2 3 4 5…15Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAGAAGAAGGATAAAGAGAA+TGG	+	chr4.4:36039966-36039985	MS.gene057730:CDS	30.0%
TATTGTTGCTAAGATCAAGA+GGG	+	chr4.4:36039524-36039543	MS.gene057730:CDS	30.0%
TGCTCAGTATGTTTATGATA+AGG	+	chr4.4:36039242-36039261	MS.gene057730:CDS	30.0%
TTTGAGAATGATATTGAACC+TGG	+	chr4.4:36039408-36039427	MS.gene057730:CDS	30.0%
AGAAGGTTAAGAAGGATGAT+GGG	+	chr4.4:36039784-36039803	MS.gene057730:CDS	35.0%
AGGACTATGTGTGTTCATTT+GGG	+	chr4.4:36039117-36039136	MS.gene057730:CDS	35.0%
ATCAAATTCCCAGTAACCTT+AGG	-	chr4.4:36038817-36038836	None:intergenic	35.0%
CTCTTAACAGCAGAAATCAA+AGG	-	chr4.4:36038994-36039013	None:intergenic	35.0%
GGTTACTATGCATGATGTTA+TGG	+	chr4.4:36039218-36039237	MS.gene057730:CDS	35.0%
GTATTGTTGCTAAGATCAAG+AGG	+	chr4.4:36039523-36039542	MS.gene057730:CDS	35.0%

Showing 1 to 10 of 162 entries

Previous1 2 3 4 5…17Next

Chromosome	Type	Strat	End	Strand	Name
chr4.4	gene	36038547	36040286	36038547	ID=MS.gene057730
chr4.4	mRNA	36038547	36040286	36038547	ID=MS.gene057730.t1;Parent=MS.gene057730
chr4.4	exon	36038547	36040286	36038547	ID=MS.gene057730.t1.exon1;Parent=MS.gene057730.t1
chr4.4	CDS	36038547	36040286	36038547	ID=cds.MS.gene057730.t1;Parent=MS.gene057730.t1

Gene Sequence

>MS.gene057730

ATGATCAAACCTGAAAAACTAACACCTACAATCGACACGTCAAACTGGCCCATTTTGTTGAAAAACTACGACCGTCTCAATGTCCGTACTGGTCACTATACCCCCCTTCCAGCTGGTCACTCACCTCTCAAACGACCCATTGCTGATTATCTGAAATATGGTGTTATCAATCTTGATAAGCCTGCTAACCCTAGTTCTCATGAGGTTGTTGCTTGGATCAAGCGTATTCTTCGTGTCGAGAAGACGGGTCACAGTGGTACTCTTGATCCTAAGGTTACTGGGAATTTGATTGTTTGTATTGACAGAGCAACAAGGTTGGTGAAGTCTCAACAAGGTGCTGGAAAAGAGTATGTTTGTATTGCTAGGCTTCATTCTGCTGTTCCTGATGTTGCTAAGGTAGCTCGTGCTCTTGAAACTTTAACTGGTGCTGTTTTTCAAAGACCACCTTTGATTTCTGCTGTTAAGAGACAACTTAGGATTAGAACTATTTATGAAAGTAAAATGCTTGAATATGATGCTGAGAAACATTTAGTTGTGTTTTGGATTTCGTGTGAGGCTGGTACTTACGTTAGGACTATGTGTGTTCATTTGGGTTTAGTTCTTGGTGTTGGTGGTCATATGCAAGAGCTTAGGAGGGTTAGGTCTGGGATTATGGGTGAGAAGGATAATATGGTTACTATGCATGATGTTATGGATGCTCAGTATGTTTATGATAAGGAGAAGAGCGATGAGACTTATTTGAGGAGGGTTGTTATGCCTTTGGAGGTTCTTTTGACTAGTTATAAGAGATTGGTCGTTAAGGATTCAGCTGTGAATGCTATTTGTTATGGTGCTAAGTTGATGATTCCTGGTTTGCTTAGGTTTGAGAATGATATTGAACCTGGTGAGGAGGTTGTGCTTATGACTACCAAGGGTGAAGCTATTGCCCTTGGTATTGCTGAGATGACTACTGCTGTTATGGCTACTTGTGATCATGGTATTGTTGCTAAGATCAAGAGGGTGGTTATGGATAGGGATACTTATCCGAGGAAATGGGGTTTGGGTCCTAGGGCTTCTATGAAGAAGAAGCTGATTGCTGCAGGGAAGCTGGATAAGCATGGGAAGCCGAATGAAAGTACTCCTCAAGAGTGGATGAGGAATGTTGTTTTACCTACTGGTGGGGACGCCGTGATTGCTGGTATGGCGGCTGCTACTGGGACTGAAGATGTGAAGAAAGAGGTTGCTGATGAAGAGGGTGAGAAGGTTAAGAAGGATGATGGGGAAGGGCGTAAGAGAAAGAAACATGAATCTGTCGATAGCCCTGCTCCTGCTAAGAAGTCCAAAGTTGCTGAAGTTGATGGTGAAGAAAAAGTGAAGACCAAGAAAGTAGATGAAGCGGCTGTGGAGGTTGAAGATGAGAAGAAAGAAAAGAAGAAGAAAAAGAAGAAGGATAAAGAGAATGGAGCTGCTGCATCTTCTGATGAGGAGAAGGTTGAAAAGGAGAAGAAAAAGAAGCACAAGGAAAAGGGTGAAGGTGGTTCTCCTGAAGTGGAAAAGTCTGAGAAGAAGAAAAAGAAGCACAAGGAAACGAGTGAAGTCGGTTCGCCTGAGGTGGACAAGTCTGAGAAGAAGAAAAAGAAGAAAGAGAAAGAAGCCAAAGATAATGCTGCAGAGATCAGTAACGGAAAGGATGAGAGCAATGCTGATAGAAGTGAGAAGAAGCACAAGAAAAAGAAAAACAAAGATGCCCAAGAAGAATAG

Protein sequence

>MS.gene057730.t1

MIKPEKLTPTIDTSNWPILLKNYDRLNVRTGHYTPLPAGHSPLKRPIADYLKYGVINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCIARLHSAVPDVAKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKMLEYDAEKHLVVFWISCEAGTYVRTMCVHLGLVLGVGGHMQELRRVRSGIMGEKDNMVTMHDVMDAQYVYDKEKSDETYLRRVVMPLEVLLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIEPGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIAAGKLDKHGKPNESTPQEWMRNVVLPTGGDAVIAGMAAATGTEDVKKEVADEEGEKVKKDDGEGRKRKKHESVDSPAPAKKSKVAEVDGEEKVKTKKVDEAAVEVEDEKKEKKKKKKKDKENGAAASSDEEKVEKEKKKKHKEKGEGGSPEVEKSEKKKKKHKETSEVGSPEVDKSEKKKKKKEKEAKDNAAEISNGKDESNADRSEKKHKKKKNKDAQEE