AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene90954


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene90954.t1 MTR_4g074160 98.042 613 11 1 1 613 1 612 0.0 1215
MS.gene90954.t1 MTR_6g004400 30.348 201 106 5 80 246 346 546 4.80e-23 103
MS.gene90954.t1 MTR_6g004400 40.244 82 49 0 80 161 346 427 8.90e-12 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene90954.t1 AT3G57150 80.171 469 77 6 9 475 6 460 0.0 736
MS.gene90954.t1 AT5G14460 31.771 192 97 5 89 246 323 514 2.15e-23 104

Find 158 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGGGTTAGGTCTGGGATTA+TGG 0.176925 4.2:-34549279 MS.gene90954:CDS
AGCCGCTTCATCTACTTTCT+TGG 0.219661 4.2:+34548554 None:intergenic
GTTCATTTGGGTTTAGTTCT+TGG 0.230459 4.2:-34549329 MS.gene90954:CDS
AGAAACATTTAGTTGTGTTT+TGG 0.271760 4.2:-34549391 MS.gene90954:CDS
TGGTGCTAAGTTGATGATTC+CGG 0.283073 4.2:-34549084 MS.gene90954:CDS
GATCTCTGCAGCATTATCTT+TGG 0.294718 4.2:+34548278 None:intergenic
GCTGGTATGGCGGCTGCTAC+TGG 0.295017 4.2:-34548738 MS.gene90954:CDS
TAGGACTATGTGTGTTCATT+TGG 0.300884 4.2:-34549342 MS.gene90954:CDS
TTCTGGTTCTGTATCTTTGT+TGG 0.332866 4.2:+34549958 None:intergenic
ATGTCTTCACCTATTCTTCT+TGG 0.341008 4.2:+34548184 None:intergenic
GAGGAGGGTTGTTATGCCTT+TGG 0.341470 4.2:-34549171 MS.gene90954:CDS
ACTCTTGATCCTAAGGTTAC+TGG 0.345085 4.2:-34549653 MS.gene90954:CDS
ACCATCAACTTCAGCAACTT+TGG 0.346981 4.2:+34548593 None:intergenic
GGAAATGGGGTTTGGGTCCT+AGG 0.348440 4.2:-34548884 MS.gene90954:CDS
CGTGCTCTTGAAACTTTAAC+TGG 0.360375 4.2:-34549509 MS.gene90954:CDS
TATGGGTGAGAAGGATAATA+TGG 0.361091 4.2:-34549261 MS.gene90954:CDS
GGTGCTAAGTTGATGATTCC+GGG 0.361757 4.2:-34549083 MS.gene90954:CDS
CAGTTTGAGGTGTCGATTGT+AGG 0.363827 4.2:+34549887 None:intergenic
TTTGACTAGTTATAAGAGAT+TGG 0.369510 4.2:-34549141 MS.gene90954:CDS
GGGATACTTATCCGAGGAAA+TGG 0.370351 4.2:-34548899 MS.gene90954:CDS
GTTTGATCATGAAATCTTGC+TGG 0.372543 4.2:+34549924 None:intergenic
TGTCTTCACCTATTCTTCTT+GGG 0.379511 4.2:+34548185 None:intergenic
ATTGCTGATTATCTGAAATA+TGG 0.384973 4.2:-34549773 MS.gene90954:CDS
AGGACTATGTGTGTTCATTT+GGG 0.389668 4.2:-34549341 MS.gene90954:CDS
GGTGGGGACGCCGTGATTGC+TGG 0.392518 4.2:-34548756 MS.gene90954:CDS
CAAAGATGCCCAAGAAGAAT+AGG 0.398166 4.2:-34548193 None:intergenic
GGTTACTATGCATGATGTTA+TGG 0.406717 4.2:-34549240 MS.gene90954:CDS
TTCTCAGACTTGTCCACCTC+AGG 0.408947 4.2:+34548327 None:intergenic
TTATCCGAGGAAATGGGGTT+TGG 0.409185 4.2:-34548892 MS.gene90954:CDS
CAACAAAATGGGCCAGTTTG+AGG 0.417673 4.2:+34549874 None:intergenic
CTGGTATGGCGGCTGCTACT+GGG 0.423425 4.2:-34548737 MS.gene90954:CDS
TAAGATCAAGAGGGTGGTTA+TGG 0.424039 4.2:-34548925 MS.gene90954:CDS
TTGGACTTCTTAGCAGGAGC+AGG 0.428365 4.2:+34548612 None:intergenic
AGGGTTAGGTCTGGGATTAT+GGG 0.428508 4.2:-34549278 MS.gene90954:CDS
TGATGATTCCGGGTTTGCTT+AGG 0.429928 4.2:-34549073 MS.gene90954:CDS
GCTGATTGCTGCAGGGAAGC+TGG 0.431749 4.2:-34548844 MS.gene90954:CDS
TCAAGAGGGTGGTTATGGAT+AGG 0.433226 4.2:-34548920 MS.gene90954:CDS
GGATACTTATCCGAGGAAAT+GGG 0.435995 4.2:-34548898 MS.gene90954:CDS
AAGAAGAAGGATAAAGAGAA+TGG 0.436116 4.2:-34548492 MS.gene90954:CDS
GCTGTGAATGCTATTTGTTA+TGG 0.437584 4.2:-34549104 MS.gene90954:CDS
TGAGATGACTACTGCTGTTA+TGG 0.438520 4.2:-34548973 MS.gene90954:CDS
TATCCGAGGAAATGGGGTTT+GGG 0.438978 4.2:-34548891 MS.gene90954:CDS
TCTTGAGGAGTACTTTCATT+CGG 0.440773 4.2:+34548807 None:intergenic
AGGTGAGTGACCAGCTGGAA+GGG 0.444423 4.2:+34549808 None:intergenic
AGAGGGTGAGAAGGTTAAGA+AGG 0.448672 4.2:-34548682 MS.gene90954:CDS
TTATAAGAGATTGGTCGTTA+AGG 0.450138 4.2:-34549132 MS.gene90954:CDS
AGCTTAGGAGGGTTAGGTCT+GGG 0.450353 4.2:-34549286 MS.gene90954:CDS
CAAGAGGGTGGTTATGGATA+GGG 0.456296 4.2:-34548919 MS.gene90954:CDS
TCTTGCCTTCAGAGAGAGAT+GGG 0.460200 4.2:+34549996 None:intergenic
GTGAGGCCGGTACTTATGTT+AGG 0.460583 4.2:-34549361 MS.gene90954:CDS
GCAACTTTGGACTTCTTAGC+AGG 0.461403 4.2:+34548606 None:intergenic
AAGAAGAAGCTGATTGCTGC+AGG 0.463700 4.2:-34548852 MS.gene90954:CDS
GGACGCCGTGATTGCTGGTA+TGG 0.464126 4.2:-34548751 MS.gene90954:CDS
CTCTTGATCCTAAGGTTACT+GGG 0.467083 4.2:-34549652 MS.gene90954:CDS
CTACAATCGACACCTCAAAC+TGG 0.467674 4.2:-34549886 MS.gene90954:CDS
TTGGGTTTAGTTCTTGGTGT+TGG 0.469171 4.2:-34549323 MS.gene90954:CDS
GTTCTCATGAGGTTGTTGCT+TGG 0.470108 4.2:-34549718 MS.gene90954:CDS
TTCTTGCCTTCAGAGAGAGA+TGG 0.474253 4.2:+34549995 None:intergenic
TGCTGTTCCTGATGTTGCTA+AGG 0.476360 4.2:-34549537 MS.gene90954:CDS
TCCAAAGTTGCTGAAGTTGA+TGG 0.479321 4.2:-34548594 MS.gene90954:CDS
GAGGGTTGTTATGCCTTTGG+AGG 0.479919 4.2:-34549168 MS.gene90954:CDS
GGTTTAGTTCTTGGTGTTGG+TGG 0.480018 4.2:-34549320 MS.gene90954:CDS
GCAACAACCTCATGAGAACT+AGG 0.480488 4.2:+34549722 None:intergenic
TGCAAGAGCTTAGGAGGGTT+AGG 0.482197 4.2:-34549292 MS.gene90954:CDS
CAGTGGTACTCTTGATCCTA+AGG 0.482757 4.2:-34549660 MS.gene90954:CDS
GTCTGGGATTATGGGTGAGA+AGG 0.485087 4.2:-34549270 MS.gene90954:CDS
TGCTCAGTATGTTTATGATA+AGG 0.488747 4.2:-34549216 MS.gene90954:CDS
GAGCTTAGGAGGGTTAGGTC+TGG 0.490050 4.2:-34549287 MS.gene90954:CDS
TGATGAGGAGAAGGTTGAAA+AGG 0.490781 4.2:-34548454 MS.gene90954:CDS
AAGAGTATGTTTGTATTGCT+AGG 0.493913 4.2:-34549568 MS.gene90954:CDS
GAGAAGGTTAAGAAGGATGA+TGG 0.494500 4.2:-34548675 MS.gene90954:CDS
TCATGAGAACTAGGGTTAGC+AGG 0.495387 4.2:+34549731 None:intergenic
AGAAGGTTAAGAAGGATGAT+GGG 0.497001 4.2:-34548674 MS.gene90954:CDS
GTGAAATCTCAACAAGGTGC+TGG 0.499500 4.2:-34549593 MS.gene90954:CDS
GGTGAGTGACCAGCTGGAAG+GGG 0.501707 4.2:+34549809 None:intergenic
CACAAGGAAAAGGGTGAAGA+TGG 0.502250 4.2:-34548417 MS.gene90954:CDS
ATCAAATTCCCAGTAACCTT+AGG 0.503949 4.2:+34549644 None:intergenic
CGAGCTACCTTAGCAACATC+AGG 0.506820 4.2:+34549530 None:intergenic
GTCATATGCAAGAGCTTAGG+AGG 0.508607 4.2:-34549298 MS.gene90954:CDS
TATTCTTCGTGTCGAGAAGA+CGG 0.508925 4.2:-34549687 MS.gene90954:CDS
GAAAGTAGATGAAGCGGCTG+TGG 0.509335 4.2:-34548550 MS.gene90954:CDS
GAAATGGGGTTTGGGTCCTA+GGG 0.510777 4.2:-34548883 MS.gene90954:CDS
AAAGAGGTTGCTGATGAAGA+GGG 0.510792 4.2:-34548699 MS.gene90954:CDS
TGCTGATGAAGAGGGTGAGA+AGG 0.511607 4.2:-34548691 MS.gene90954:CDS
TTGAGAGGTGAGTGACCAGC+TGG 0.515974 4.2:+34549803 None:intergenic
ATTCTTCGTGTCGAGAAGAC+GGG 0.516109 4.2:-34549686 MS.gene90954:CDS
GTTATGGCTACTTGTGATCA+TGG 0.518206 4.2:-34548957 MS.gene90954:CDS
AGAGCGATGAGACTTATTTG+AGG 0.518362 4.2:-34549190 MS.gene90954:CDS
GTGGTCATATGCAAGAGCTT+AGG 0.520527 4.2:-34549301 MS.gene90954:CDS
AGAGAGAGATGGGGACATGA+TGG 0.524072 4.2:+34550006 None:intergenic
GTACTCCTCAAGAGTGGATG+AGG 0.525760 4.2:-34548797 MS.gene90954:CDS
CGATGAGACTTATTTGAGGA+GGG 0.530709 4.2:-34549186 MS.gene90954:CDS
GACCGCCTCAATGTCCGTAC+TGG 0.533848 4.2:-34549842 MS.gene90954:CDS
TATTTCAGATAATCAGCAAT+GGG 0.541396 4.2:+34549776 None:intergenic
TGAAGTCGGTTCGCCTGAGG+TGG 0.545768 4.2:-34548340 MS.gene90954:CDS
TGCATCTTCTGATGAGGAGA+AGG 0.555918 4.2:-34548463 MS.gene90954:CDS
AGCCGCCATACCAGCAATCA+CGG 0.555963 4.2:+34548746 None:intergenic
TTCTCAAACCTAAGCAAACC+CGG 0.556341 4.2:+34549065 None:intergenic
GTGAGTGACCAGCTGGAAGG+GGG 0.556834 4.2:+34549810 None:intergenic
TGAAGATGGTTCTCCTGAAG+TGG 0.558835 4.2:-34548403 MS.gene90954:CDS
AAGGGTGAAGCTATTGCCCT+TGG 0.558857 4.2:-34549002 MS.gene90954:CDS
TTAAGAAGGATGATGGGGAA+GGG 0.559638 4.2:-34548668 MS.gene90954:CDS
GGACCCAAACCCCATTTCCT+CGG 0.561902 4.2:+34548888 None:intergenic
GTTAAGAAGGATGATGGGGA+AGG 0.562363 4.2:-34548669 MS.gene90954:CDS
GACCAAGAAAGTAGATGAAG+CGG 0.563615 4.2:-34548556 MS.gene90954:CDS
CTGCTGTTAAGAGACAACTT+AGG 0.565713 4.2:-34549457 MS.gene90954:CDS
ATGTCCCCATCTCTCTCTGA+AGG 0.569959 4.2:-34550001 MS.gene90954:CDS
AGTAGATGAAGCGGCTGTGG+AGG 0.570309 4.2:-34548547 MS.gene90954:CDS
TGGACTTCTTAGCAGGAGCA+GGG 0.572350 4.2:+34548613 None:intergenic
GCAGGGAAGCTGGATAAGCA+TGG 0.572801 4.2:-34548834 MS.gene90954:CDS
CGCCGTGATTGCTGGTATGG+CGG 0.577954 4.2:-34548748 MS.gene90954:CDS
TTCTTCTTCATAGAAGCCCT+AGG 0.578222 4.2:+34548867 None:intergenic
ATAAGCACAACCTCCTCACC+AGG 0.579419 4.2:+34549032 None:intergenic
CACAAGGAAACGAGTGAAGT+CGG 0.580195 4.2:-34548354 MS.gene90954:CDS
GCGATGAGACTTATTTGAGG+AGG 0.584233 4.2:-34549187 MS.gene90954:CDS
AAGGGCAATAGCTTCACCCT+TGG 0.584541 4.2:+34549004 None:intergenic
CAGGGAAGCTGGATAAGCAT+GGG 0.585096 4.2:-34548833 MS.gene90954:CDS
TCAGCAATGGGTCGTTTGAG+AGG 0.590490 4.2:+34549788 None:intergenic
GAAAGAGGTTGCTGATGAAG+AGG 0.591372 4.2:-34548700 MS.gene90954:CDS
GAGGTGAGTGACCAGCTGGA+AGG 0.595183 4.2:+34549807 None:intergenic
CATAGTCCTAACATAAGTAC+CGG 0.600318 4.2:+34549355 None:intergenic
ACATTCCTCATCCACTCTTG+AGG 0.608152 4.2:+34548792 None:intergenic
GAAGGTTAAGAAGGATGATG+GGG 0.610370 4.2:-34548673 MS.gene90954:CDS
CTAGTCAAAAGAACCTCCAA+AGG 0.615878 4.2:+34549155 None:intergenic
TATTGACAGAGCAACGAGGT+TGG 0.616767 4.2:-34549615 MS.gene90954:CDS
TGAGTGACCAGCTGGAAGGG+GGG 0.617538 4.2:+34549811 None:intergenic
GATACTTATCCGAGGAAATG+GGG 0.621162 4.2:-34548897 MS.gene90954:CDS
AGTGACCAGTACGGACATTG+AGG 0.623451 4.2:+34549837 None:intergenic
CTCTTAACAGCAGAAATCAA+AGG 0.625059 4.2:+34549467 None:intergenic
ATATTTCAGATAATCAGCAA+TGG 0.627850 4.2:+34549775 None:intergenic
TGCAGAGATCAGTAACGGAA+AGG 0.627993 4.2:-34548265 MS.gene90954:CDS
ATGAAAGTACTCCTCAAGAG+TGG 0.631391 4.2:-34548803 MS.gene90954:CDS
GTATTGTTGCTAAGATCAAG+AGG 0.631960 4.2:-34548935 MS.gene90954:CDS
CAACAACCTCATGAGAACTA+GGG 0.632219 4.2:+34549723 None:intergenic
GAGTGAAGTCGGTTCGCCTG+AGG 0.633165 4.2:-34548343 MS.gene90954:CDS
TGCTAACCCTAGTTCTCATG+AGG 0.636176 4.2:-34549729 MS.gene90954:CDS
AATGCTGCAGAGATCAGTAA+CGG 0.637087 4.2:-34548270 MS.gene90954:CDS
TAGTCATCTCAGCAATACCA+AGG 0.640655 4.2:+34548985 None:intergenic
AGCTGCTGCATCTTCTGATG+AGG 0.641491 4.2:-34548469 MS.gene90954:CDS
GACTGAAGATGTGAAGAAAG+AGG 0.647185 4.2:-34548715 MS.gene90954:CDS
TTTGAGAATGATATTGAACC+TGG 0.653930 4.2:-34549050 MS.gene90954:CDS
TTAACAGCAGAAATCAAAGG+TGG 0.656440 4.2:+34549470 None:intergenic
AGAAGAAGCTGATTGCTGCA+GGG 0.658320 4.2:-34548851 MS.gene90954:CDS
GGTTGTGCTTATGACTACCA+AGG 0.659102 4.2:-34549021 MS.gene90954:CDS
TGTTGCTAAGATCAAGAGGG+TGG 0.661471 4.2:-34548931 MS.gene90954:CDS
CTTGCCTTCAGAGAGAGATG+GGG 0.670821 4.2:+34549997 None:intergenic
GAATGATATTGAACCTGGTG+AGG 0.674019 4.2:-34549045 MS.gene90954:CDS
ATCACGGCGTCCCCACCAGT+AGG 0.679551 4.2:+34548762 None:intergenic
AGTCATCTCAGCAATACCAA+GGG 0.685774 4.2:+34548986 None:intergenic
TGATATTGAACCTGGTGAGG+AGG 0.686276 4.2:-34549042 MS.gene90954:CDS
GTTGTGCTTATGACTACCAA+GGG 0.691718 4.2:-34549020 MS.gene90954:CDS
GACCAGTACGGACATTGAGG+CGG 0.696590 4.2:+34549840 None:intergenic
TATTGTTGCTAAGATCAAGA+GGG 0.700862 4.2:-34548934 MS.gene90954:CDS
TGGATAGGGATACTTATCCG+AGG 0.711704 4.2:-34548905 MS.gene90954:CDS
TCATATGCAAGAGCTTAGGA+GGG 0.728673 4.2:-34549297 MS.gene90954:CDS
AGGTTGGTGAAATCTCAACA+AGG 0.729026 4.2:-34549599 MS.gene90954:CDS
GTCGAGAAGACGGGTCACAG+TGG 0.744339 4.2:-34549677 MS.gene90954:CDS
TTTGTATTGACAGAGCAACG+AGG 0.787641 4.2:-34549619 MS.gene90954:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AAAGAAGAAGAAAAAGAAGA+AGG - chr4.2:34549702-34549721 MS.gene90954:CDS 25.0%
! ATATTTCAGATAATCAGCAA+TGG + chr4.2:34548435-34548454 None:intergenic 25.0%
! TATTTCAGATAATCAGCAAT+GGG + chr4.2:34548434-34548453 None:intergenic 25.0%
!! AGAAACATTTAGTTGTGTTT+TGG - chr4.2:34548816-34548835 MS.gene90954:CDS 25.0%
!! ATTGCTGATTATCTGAAATA+TGG - chr4.2:34548434-34548453 MS.gene90954:CDS 25.0%
!! TTTGACTAGTTATAAGAGAT+TGG - chr4.2:34549066-34549085 MS.gene90954:CDS 25.0%
!!! TCGTAGTTTTTCAACAAAAT+GGG + chr4.2:34548347-34548366 None:intergenic 25.0%
AAGAAGAAGGATAAAGAGAA+TGG - chr4.2:34549715-34549734 MS.gene90954:CDS 30.0%
TATTGTTGCTAAGATCAAGA+GGG - chr4.2:34549273-34549292 MS.gene90954:CDS 30.0%
TGCTCAGTATGTTTATGATA+AGG - chr4.2:34548991-34549010 MS.gene90954:CDS 30.0%
TTTGAGAATGATATTGAACC+TGG - chr4.2:34549157-34549176 MS.gene90954:CDS 30.0%
! AAAAAGAAGCACAAGGAAAA+GGG - chr4.2:34549781-34549800 MS.gene90954:CDS 30.0%
! AAGAGTATGTTTGTATTGCT+AGG - chr4.2:34548639-34548658 MS.gene90954:CDS 30.0%
! ATTGTAGGTGTAAGTTTTTC+AGG + chr4.2:34548308-34548327 None:intergenic 30.0%
! TTATAAGAGATTGGTCGTTA+AGG - chr4.2:34549075-34549094 MS.gene90954:CDS 30.0%
!! GTCGTAGTTTTTCAACAAAA+TGG + chr4.2:34548348-34548367 None:intergenic 30.0%
AGAAGGTTAAGAAGGATGAT+GGG - chr4.2:34549533-34549552 MS.gene90954:CDS 35.0%
AGGACTATGTGTGTTCATTT+GGG - chr4.2:34548866-34548885 MS.gene90954:CDS 35.0%
ATCAAATTCCCAGTAACCTT+AGG + chr4.2:34548566-34548585 None:intergenic 35.0%
CATAGTCCTAACATAAGTAC+CGG + chr4.2:34548855-34548874 None:intergenic 35.0%
CTCTTAACAGCAGAAATCAA+AGG + chr4.2:34548743-34548762 None:intergenic 35.0%
GGTTACTATGCATGATGTTA+TGG - chr4.2:34548967-34548986 MS.gene90954:CDS 35.0%
GTATTGTTGCTAAGATCAAG+AGG - chr4.2:34549272-34549291 MS.gene90954:CDS 35.0%
GTTTGATCATGAAATCTTGC+TGG + chr4.2:34548286-34548305 None:intergenic 35.0%
TAGGACTATGTGTGTTCATT+TGG - chr4.2:34548865-34548884 MS.gene90954:CDS 35.0%
TATGGGTGAGAAGGATAATA+TGG - chr4.2:34548946-34548965 MS.gene90954:CDS 35.0%
TTAACAGCAGAAATCAAAGG+TGG + chr4.2:34548740-34548759 None:intergenic 35.0%
! GAAAAAGAAGCACAAGGAAA+AGG - chr4.2:34549780-34549799 MS.gene90954:CDS 35.0%
! GAAGAAGAAAAAGAAGCACA+AGG - chr4.2:34549837-34549856 MS.gene90954:CDS 35.0%
! GCTGTGAATGCTATTTGTTA+TGG - chr4.2:34549103-34549122 MS.gene90954:CDS 35.0%
!! GTTCATTTGGGTTTAGTTCT+TGG - chr4.2:34548878-34548897 MS.gene90954:CDS 35.0%
!! TCTTGAGGAGTACTTTCATT+CGG + chr4.2:34549403-34549422 None:intergenic 35.0%
!! TTCTGGTTCTGTATCTTTGT+TGG + chr4.2:34548252-34548271 None:intergenic 35.0%
!!! AATGTTGTTTTACCTACTGG+TGG - chr4.2:34549433-34549452 MS.gene90954:CDS 35.0%
!!! AGGAATGTTGTTTTACCTAC+TGG - chr4.2:34549430-34549449 MS.gene90954:CDS 35.0%
!!! ATGAAATCTTGCTGGTTTTG+TGG + chr4.2:34548278-34548297 None:intergenic 35.0%
!!! ATGTTGTTTTACCTACTGGT+GGG - chr4.2:34549434-34549453 MS.gene90954:CDS 35.0%
AAAGAGGTTGCTGATGAAGA+GGG - chr4.2:34549508-34549527 MS.gene90954:CDS 40.0%
AATGCTGCAGAGATCAGTAA+CGG - chr4.2:34549937-34549956 MS.gene90954:CDS 40.0%
ACCATCAACTTCAGCAACTT+TGG + chr4.2:34549617-34549636 None:intergenic 40.0%
ACTCTTGATCCTAAGGTTAC+TGG - chr4.2:34548554-34548573 MS.gene90954:CDS 40.0%
AGAGCGATGAGACTTATTTG+AGG - chr4.2:34549017-34549036 MS.gene90954:CDS 40.0%
AGTCATCTCAGCAATACCAA+GGG + chr4.2:34549224-34549243 None:intergenic 40.0%
CAACAACCTCATGAGAACTA+GGG + chr4.2:34548487-34548506 None:intergenic 40.0%
CGATGAGACTTATTTGAGGA+GGG - chr4.2:34549021-34549040 MS.gene90954:CDS 40.0%
CGTGCTCTTGAAACTTTAAC+TGG - chr4.2:34548698-34548717 MS.gene90954:CDS 40.0%
CTAGTCAAAAGAACCTCCAA+AGG + chr4.2:34549055-34549074 None:intergenic 40.0%
CTCTTGATCCTAAGGTTACT+GGG - chr4.2:34548555-34548574 MS.gene90954:CDS 40.0%
CTGCTGTTAAGAGACAACTT+AGG - chr4.2:34548750-34548769 MS.gene90954:CDS 40.0%
GAAGGTTAAGAAGGATGATG+GGG - chr4.2:34549534-34549553 MS.gene90954:CDS 40.0%
GAATGATATTGAACCTGGTG+AGG - chr4.2:34549162-34549181 MS.gene90954:CDS 40.0%
GACCAAGAAAGTAGATGAAG+CGG - chr4.2:34549651-34549670 MS.gene90954:CDS 40.0%
GACTGAAGATGTGAAGAAAG+AGG - chr4.2:34549492-34549511 MS.gene90954:CDS 40.0%
GAGAAGGTTAAGAAGGATGA+TGG - chr4.2:34549532-34549551 MS.gene90954:CDS 40.0%
GATACTTATCCGAGGAAATG+GGG - chr4.2:34549310-34549329 MS.gene90954:CDS 40.0%
GATCTCTGCAGCATTATCTT+TGG + chr4.2:34549932-34549951 None:intergenic 40.0%
GGATACTTATCCGAGGAAAT+GGG - chr4.2:34549309-34549328 MS.gene90954:CDS 40.0%
GTTATGGCTACTTGTGATCA+TGG - chr4.2:34549250-34549269 MS.gene90954:CDS 40.0%
GTTGTGCTTATGACTACCAA+GGG - chr4.2:34549187-34549206 MS.gene90954:CDS 40.0%
TAAGATCAAGAGGGTGGTTA+TGG - chr4.2:34549282-34549301 MS.gene90954:CDS 40.0%
TAGTCATCTCAGCAATACCA+AGG + chr4.2:34549225-34549244 None:intergenic 40.0%
TATTCTTCGTGTCGAGAAGA+CGG - chr4.2:34548520-34548539 MS.gene90954:CDS 40.0%
TCATATGCAAGAGCTTAGGA+GGG - chr4.2:34548910-34548929 MS.gene90954:CDS 40.0%
TCCAAAGTTGCTGAAGTTGA+TGG - chr4.2:34549613-34549632 MS.gene90954:CDS 40.0%
TGAGATGACTACTGCTGTTA+TGG - chr4.2:34549234-34549253 MS.gene90954:CDS 40.0%
TGATGAGGAGAAGGTTGAAA+AGG - chr4.2:34549753-34549772 MS.gene90954:CDS 40.0%
TTCTCAAACCTAAGCAAACC+CGG + chr4.2:34549145-34549164 None:intergenic 40.0%
TTCTTCTTCATAGAAGCCCT+AGG + chr4.2:34549343-34549362 None:intergenic 40.0%
! GGAGAAGAAAAAGAAGCACA+AGG - chr4.2:34549774-34549793 MS.gene90954:CDS 40.0%
! TTCTCAGACTTTTCCACTTC+AGG + chr4.2:34549820-34549839 None:intergenic 40.0%
! TTTGTATTGACAGAGCAACG+AGG - chr4.2:34548588-34548607 MS.gene90954:CDS 40.0%
!! AGGTTGGTGAAATCTCAACA+AGG - chr4.2:34548608-34548627 MS.gene90954:CDS 40.0%
!! ATGAAAGTACTCCTCAAGAG+TGG - chr4.2:34549404-34549423 MS.gene90954:CDS 40.0%
!! TGGTGCTAAGTTGATGATTC+CGG - chr4.2:34549123-34549142 MS.gene90954:CDS 40.0%
!! TGTGTTTTGGATTTCGTGTG+AGG - chr4.2:34548829-34548848 MS.gene90954:CDS 40.0%
!! TTAAGAAGGATGATGGGGAA+GGG - chr4.2:34549539-34549558 MS.gene90954:CDS 40.0%
!! TTGGGTTTAGTTCTTGGTGT+TGG - chr4.2:34548884-34548903 MS.gene90954:CDS 40.0%
!!! TGTTGTTTTACCTACTGGTG+GGG - chr4.2:34549435-34549454 MS.gene90954:CDS 40.0%
AAGAAGAAGCTGATTGCTGC+AGG - chr4.2:34549355-34549374 MS.gene90954:CDS 45.0%
ACATTCCTCATCCACTCTTG+AGG + chr4.2:34549418-34549437 None:intergenic 45.0%
AGAAGAAGCTGATTGCTGCA+GGG - chr4.2:34549356-34549375 MS.gene90954:CDS 45.0%
AGAGGGTGAGAAGGTTAAGA+AGG - chr4.2:34549525-34549544 MS.gene90954:CDS 45.0%
AGCCGCTTCATCTACTTTCT+TGG + chr4.2:34549656-34549675 None:intergenic 45.0%
ATTCTTCGTGTCGAGAAGAC+GGG - chr4.2:34548521-34548540 MS.gene90954:CDS 45.0%
CAACAAAATGGGCCAGTTTG+AGG + chr4.2:34548336-34548355 None:intergenic 45.0%
CAAGAGGGTGGTTATGGATA+GGG - chr4.2:34549288-34549307 MS.gene90954:CDS 45.0%
CACAAGGAAAAGGGTGAAGA+TGG - chr4.2:34549790-34549809 MS.gene90954:CDS 45.0%
CACAAGGAAACGAGTGAAGT+CGG - chr4.2:34549853-34549872 MS.gene90954:CDS 45.0%
CAGTGGTACTCTTGATCCTA+AGG - chr4.2:34548547-34548566 MS.gene90954:CDS 45.0%
CTACAATCGACACCTCAAAC+TGG - chr4.2:34548321-34548340 MS.gene90954:CDS 45.0%
GAAAGAGGTTGCTGATGAAG+AGG - chr4.2:34549507-34549526 MS.gene90954:CDS 45.0%
GCAACAACCTCATGAGAACT+AGG + chr4.2:34548488-34548507 None:intergenic 45.0%
GCAACTTTGGACTTCTTAGC+AGG + chr4.2:34549604-34549623 None:intergenic 45.0%
GCGATGAGACTTATTTGAGG+AGG - chr4.2:34549020-34549039 MS.gene90954:CDS 45.0%
GGGATACTTATCCGAGGAAA+TGG - chr4.2:34549308-34549327 MS.gene90954:CDS 45.0%
GGTTGTGCTTATGACTACCA+AGG - chr4.2:34549186-34549205 MS.gene90954:CDS 45.0%
GTCATATGCAAGAGCTTAGG+AGG - chr4.2:34548909-34548928 MS.gene90954:CDS 45.0%
GTGAAATCTCAACAAGGTGC+TGG - chr4.2:34548614-34548633 MS.gene90954:CDS 45.0%
GTGGTCATATGCAAGAGCTT+AGG - chr4.2:34548906-34548925 MS.gene90954:CDS 45.0%
GTTCTCATGAGGTTGTTGCT+TGG - chr4.2:34548489-34548508 MS.gene90954:CDS 45.0%
TATCCGAGGAAATGGGGTTT+GGG - chr4.2:34549316-34549335 MS.gene90954:CDS 45.0%
TATTGACAGAGCAACGAGGT+TGG - chr4.2:34548592-34548611 MS.gene90954:CDS 45.0%
TCAAGAGGGTGGTTATGGAT+AGG - chr4.2:34549287-34549306 MS.gene90954:CDS 45.0%
TCTTGCCTTCAGAGAGAGAT+GGG + chr4.2:34548214-34548233 None:intergenic 45.0%
TGAAGATGGTTCTCCTGAAG+TGG - chr4.2:34549804-34549823 MS.gene90954:CDS 45.0%
TGATATTGAACCTGGTGAGG+AGG - chr4.2:34549165-34549184 MS.gene90954:CDS 45.0%
TGCATCTTCTGATGAGGAGA+AGG - chr4.2:34549744-34549763 MS.gene90954:CDS 45.0%
TGCTGTTCCTGATGTTGCTA+AGG - chr4.2:34548670-34548689 MS.gene90954:CDS 45.0%
TGGATAGGGATACTTATCCG+AGG - chr4.2:34549302-34549321 MS.gene90954:CDS 45.0%
TGTTGCTAAGATCAAGAGGG+TGG - chr4.2:34549276-34549295 MS.gene90954:CDS 45.0%
TTATCCGAGGAAATGGGGTT+TGG - chr4.2:34549315-34549334 MS.gene90954:CDS 45.0%
TTCTTGCCTTCAGAGAGAGA+TGG + chr4.2:34548215-34548234 None:intergenic 45.0%
! AGGGTTAGGTCTGGGATTAT+GGG - chr4.2:34548929-34548948 MS.gene90954:CDS 45.0%
! TCATGAGAACTAGGGTTAGC+AGG + chr4.2:34548479-34548498 None:intergenic 45.0%
! TGATGATTCCGGGTTTGCTT+AGG - chr4.2:34549134-34549153 MS.gene90954:CDS 45.0%
! TGCAGAGATCAGTAACGGAA+AGG - chr4.2:34549942-34549961 MS.gene90954:CDS 45.0%
! TGCTAACCCTAGTTCTCATG+AGG - chr4.2:34548478-34548497 MS.gene90954:CDS 45.0%
! TTTTGGATTTCGTGTGAGGC+CGG - chr4.2:34548833-34548852 MS.gene90954:CDS 45.0%
!! CAGTTTGAGGTGTCGATTGT+AGG + chr4.2:34548323-34548342 None:intergenic 45.0%
!! GGTGCTAAGTTGATGATTCC+GGG - chr4.2:34549124-34549143 MS.gene90954:CDS 45.0%
!! GGTTTAGTTCTTGGTGTTGG+TGG - chr4.2:34548887-34548906 MS.gene90954:CDS 45.0%
!! GTTAAGAAGGATGATGGGGA+AGG - chr4.2:34549538-34549557 MS.gene90954:CDS 45.0%
!!! TGCTGGTTTTGTGGTTGTTC+TGG + chr4.2:34548269-34548288 None:intergenic 45.0%
AAGGGCAATAGCTTCACCCT+TGG + chr4.2:34549206-34549225 None:intergenic 50.0%
AAGGGTGAAGCTATTGCCCT+TGG - chr4.2:34549205-34549224 MS.gene90954:CDS 50.0%
AGAGAGAGATGGGGACATGA+TGG + chr4.2:34548204-34548223 None:intergenic 50.0%
AGCTGCTGCATCTTCTGATG+AGG - chr4.2:34549738-34549757 MS.gene90954:CDS 50.0%
AGCTTAGGAGGGTTAGGTCT+GGG - chr4.2:34548921-34548940 MS.gene90954:CDS 50.0%
AGTGACCAGTACGGACATTG+AGG + chr4.2:34548373-34548392 None:intergenic 50.0%
ATAAGCACAACCTCCTCACC+AGG + chr4.2:34549178-34549197 None:intergenic 50.0%
ATGTCCCCATCTCTCTCTGA+AGG - chr4.2:34548206-34548225 MS.gene90954:CDS 50.0%
CAGGGAAGCTGGATAAGCAT+GGG - chr4.2:34549374-34549393 MS.gene90954:CDS 50.0%
CGAGCTACCTTAGCAACATC+AGG + chr4.2:34548680-34548699 None:intergenic 50.0%
CTTGCCTTCAGAGAGAGATG+GGG + chr4.2:34548213-34548232 None:intergenic 50.0%
GAAAGTAGATGAAGCGGCTG+TGG - chr4.2:34549657-34549676 MS.gene90954:CDS 50.0%
GAAATGGGGTTTGGGTCCTA+GGG - chr4.2:34549324-34549343 MS.gene90954:CDS 50.0%
GAGGAGGGTTGTTATGCCTT+TGG - chr4.2:34549036-34549055 MS.gene90954:CDS 50.0%
GAGGGTTGTTATGCCTTTGG+AGG - chr4.2:34549039-34549058 MS.gene90954:CDS 50.0%
GTACTCCTCAAGAGTGGATG+AGG - chr4.2:34549410-34549429 MS.gene90954:CDS 50.0%
GTGAGGCCGGTACTTATGTT+AGG - chr4.2:34548846-34548865 MS.gene90954:CDS 50.0%
TCAGCAATGGGTCGTTTGAG+AGG + chr4.2:34548422-34548441 None:intergenic 50.0%
TGCAAGAGCTTAGGAGGGTT+AGG - chr4.2:34548915-34548934 MS.gene90954:CDS 50.0%
TGCTGATGAAGAGGGTGAGA+AGG - chr4.2:34549516-34549535 MS.gene90954:CDS 50.0%
TGGACTTCTTAGCAGGAGCA+GGG + chr4.2:34549597-34549616 None:intergenic 50.0%
TTCTCAGACTTGTCCACCTC+AGG + chr4.2:34549883-34549902 None:intergenic 50.0%
TTGGACTTCTTAGCAGGAGC+AGG + chr4.2:34549598-34549617 None:intergenic 50.0%
! GAGGGTTAGGTCTGGGATTA+TGG - chr4.2:34548928-34548947 MS.gene90954:CDS 50.0%
! GTCTGGGATTATGGGTGAGA+AGG - chr4.2:34548937-34548956 MS.gene90954:CDS 50.0%
AGCCGCCATACCAGCAATCA+CGG + chr4.2:34549464-34549483 None:intergenic 55.0%
AGGTGAGTGACCAGCTGGAA+GGG + chr4.2:34548402-34548421 None:intergenic 55.0%
AGTAGATGAAGCGGCTGTGG+AGG - chr4.2:34549660-34549679 MS.gene90954:CDS 55.0%
GACCAGTACGGACATTGAGG+CGG + chr4.2:34548370-34548389 None:intergenic 55.0%
GAGCTTAGGAGGGTTAGGTC+TGG - chr4.2:34548920-34548939 MS.gene90954:CDS 55.0%
GCAGGGAAGCTGGATAAGCA+TGG - chr4.2:34549373-34549392 MS.gene90954:CDS 55.0%
GGAAATGGGGTTTGGGTCCT+AGG - chr4.2:34549323-34549342 MS.gene90954:CDS 55.0%
GGACCCAAACCCCATTTCCT+CGG + chr4.2:34549322-34549341 None:intergenic 55.0%
TTGAGAGGTGAGTGACCAGC+TGG + chr4.2:34548407-34548426 None:intergenic 55.0%
! GGGGGGTATAGTGACCAGTA+CGG + chr4.2:34548382-34548401 None:intergenic 55.0%
CACTATACCCCCCTTCCAGC+TGG - chr4.2:34548389-34548408 MS.gene90954:CDS 60.0%
CGCCGTGATTGCTGGTATGG+CGG - chr4.2:34549459-34549478 MS.gene90954:CDS 60.0%
CTGGTATGGCGGCTGCTACT+GGG - chr4.2:34549470-34549489 MS.gene90954:CDS 60.0%
GACCGCCTCAATGTCCGTAC+TGG - chr4.2:34548365-34548384 MS.gene90954:CDS 60.0%
GAGGTGAGTGACCAGCTGGA+AGG + chr4.2:34548403-34548422 None:intergenic 60.0%
GCTGATTGCTGCAGGGAAGC+TGG - chr4.2:34549363-34549382 MS.gene90954:CDS 60.0%
GGACGCCGTGATTGCTGGTA+TGG - chr4.2:34549456-34549475 MS.gene90954:CDS 60.0%
GGTGAGTGACCAGCTGGAAG+GGG + chr4.2:34548401-34548420 None:intergenic 60.0%
GTCGAGAAGACGGGTCACAG+TGG - chr4.2:34548530-34548549 MS.gene90954:CDS 60.0%
GTGAGTGACCAGCTGGAAGG+GGG + chr4.2:34548400-34548419 None:intergenic 60.0%
TGAGTGACCAGCTGGAAGGG+GGG + chr4.2:34548399-34548418 None:intergenic 60.0%
!! GAGTGAAGTCGGTTCGCCTG+AGG - chr4.2:34549864-34549883 MS.gene90954:CDS 60.0%
!! TGAAGTCGGTTCGCCTGAGG+TGG - chr4.2:34549867-34549886 MS.gene90954:CDS 60.0%
ATCACGGCGTCCCCACCAGT+AGG + chr4.2:34549448-34549467 None:intergenic 65.0%
GCTGGTATGGCGGCTGCTAC+TGG - chr4.2:34549469-34549488 MS.gene90954:CDS 65.0%
GGTGGGGACGCCGTGATTGC+TGG - chr4.2:34549451-34549470 MS.gene90954:CDS 70.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 34548194 34550035 34548194 ID=MS.gene90954
chr4.2 mRNA 34548194 34550035 34548194 ID=MS.gene90954.t1;Parent=MS.gene90954
chr4.2 exon 34548194 34550035 34548194 ID=MS.gene90954.t1.exon1;Parent=MS.gene90954.t1
chr4.2 CDS 34548194 34550035 34548194 ID=cds.MS.gene90954.t1;Parent=MS.gene90954.t1
Gene Sequence

>MS.gene90954

ATGTCTTCCATCATGTCCCCATCTCTCTCTGAAGGCAAGAAGAAGAAGAAAAACACCAACAAAGATACAGAACCAGAACAACCACAAAACCAGCAAGATTTCATGATCAAACCTGAAAAACTTACACCTACAATCGACACCTCAAACTGGCCCATTTTGTTGAAAAACTACGACCGCCTCAATGTCCGTACTGGTCACTATACCCCCCTTCCAGCTGGTCACTCACCTCTCAAACGACCCATTGCTGATTATCTGAAATATGGTGTTATCAATCTTGATAAGCCTGCTAACCCTAGTTCTCATGAGGTTGTTGCTTGGATCAAGCGTATTCTTCGTGTCGAGAAGACGGGTCACAGTGGTACTCTTGATCCTAAGGTTACTGGGAATTTGATTGTTTGTATTGACAGAGCAACGAGGTTGGTGAAATCTCAACAAGGTGCTGGAAAAGAGTATGTTTGTATTGCTAGGCTTCATTCTGCTGTTCCTGATGTTGCTAAGGTAGCTCGTGCTCTTGAAACTTTAACTGGTGCTGTTTTTCAAAGACCACCTTTGATTTCTGCTGTTAAGAGACAACTTAGGATTAGAACTATTTATGAAAGTAAAATGCTTGAATATGATGCTGAGAAACATTTAGTTGTGTTTTGGATTTCGTGTGAGGCCGGTACTTATGTTAGGACTATGTGTGTTCATTTGGGTTTAGTTCTTGGTGTTGGTGGTCATATGCAAGAGCTTAGGAGGGTTAGGTCTGGGATTATGGGTGAGAAGGATAATATGGTTACTATGCATGATGTTATGGATGCTCAGTATGTTTATGATAAGGAGAAGAGCGATGAGACTTATTTGAGGAGGGTTGTTATGCCTTTGGAGGTTCTTTTGACTAGTTATAAGAGATTGGTCGTTAAGGATTCAGCTGTGAATGCTATTTGTTATGGTGCTAAGTTGATGATTCCGGGTTTGCTTAGGTTTGAGAATGATATTGAACCTGGTGAGGAGGTTGTGCTTATGACTACCAAGGGTGAAGCTATTGCCCTTGGTATTGCTGAGATGACTACTGCTGTTATGGCTACTTGTGATCATGGTATTGTTGCTAAGATCAAGAGGGTGGTTATGGATAGGGATACTTATCCGAGGAAATGGGGTTTGGGTCCTAGGGCTTCTATGAAGAAGAAGCTGATTGCTGCAGGGAAGCTGGATAAGCATGGGAAGCCGAATGAAAGTACTCCTCAAGAGTGGATGAGGAATGTTGTTTTACCTACTGGTGGGGACGCCGTGATTGCTGGTATGGCGGCTGCTACTGGGACTGAAGATGTGAAGAAAGAGGTTGCTGATGAAGAGGGTGAGAAGGTTAAGAAGGATGATGGGGAAGGGCGTAAGAGAAAGAAACATGAATCTGTCGATAGCCCTGCTCCTGCTAAGAAGTCCAAAGTTGCTGAAGTTGATGGTGAAGAAAAAGTGAAGACCAAGAAAGTAGATGAAGCGGCTGTGGAGGTTGAAGATGAGAAGAAAGAAAAGAAGAAGAAAAAGAAGAAGGATAAAGAGAATGGAGCTGCTGCATCTTCTGATGAGGAGAAGGTTGAAAAGGAGAAGAAAAAGAAGCACAAGGAAAAGGGTGAAGATGGTTCTCCTGAAGTGGAAAAGTCTGAGAAGAAGAAAAAGAAGCACAAGGAAACGAGTGAAGTCGGTTCGCCTGAGGTGGACAAGTCTGAGAAGAAGAAAAAGAAGAAAGAGAAAGAAGCCAAAGATAATGCTGCAGAGATCAGTAACGGAAAGGATGAGAGCAATGCTGATAGAAGTGAGAAGAAGCACAAGAAAAAGAAAAACAAAGATGCCCAAGAAGAATAG

Protein sequence

>MS.gene90954.t1

MSSIMSPSLSEGKKKKKNTNKDTEPEQPQNQQDFMIKPEKLTPTIDTSNWPILLKNYDRLNVRTGHYTPLPAGHSPLKRPIADYLKYGVINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCIARLHSAVPDVAKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKMLEYDAEKHLVVFWISCEAGTYVRTMCVHLGLVLGVGGHMQELRRVRSGIMGEKDNMVTMHDVMDAQYVYDKEKSDETYLRRVVMPLEVLLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIEPGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIAAGKLDKHGKPNESTPQEWMRNVVLPTGGDAVIAGMAAATGTEDVKKEVADEEGEKVKKDDGEGRKRKKHESVDSPAPAKKSKVAEVDGEEKVKTKKVDEAAVEVEDEKKEKKKKKKKDKENGAAASSDEEKVEKEKKKKHKEKGEDGSPEVEKSEKKKKKHKETSEVGSPEVDKSEKKKKKKEKEAKDNAAEISNGKDESNADRSEKKHKKKKNKDAQEE