Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene90954.t1 | XP_013456513.1 | 98.9 | 449 | 5 | 0 | 1 | 449 | 1 | 449 | 2.20E-243 | 851.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene90954.t1 | Q9LD90 | 86.4 | 413 | 53 | 2 | 33 | 445 | 26 | 435 | 2.7e-210 | 733.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene90954.t1 | A0A072ULA4 | 98.9 | 449 | 5 | 0 | 1 | 449 | 1 | 449 | 1.6e-243 | 851.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene90954.t1 | MTR_4g074160 | 98.042 | 613 | 11 | 1 | 1 | 613 | 1 | 612 | 0.0 | 1215 |
MS.gene90954.t1 | MTR_6g004400 | 30.348 | 201 | 106 | 5 | 80 | 246 | 346 | 546 | 4.80e-23 | 103 |
MS.gene90954.t1 | MTR_6g004400 | 40.244 | 82 | 49 | 0 | 80 | 161 | 346 | 427 | 8.90e-12 | 67.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene90954.t1 | AT3G57150 | 80.171 | 469 | 77 | 6 | 9 | 475 | 6 | 460 | 0.0 | 736 |
MS.gene90954.t1 | AT5G14460 | 31.771 | 192 | 97 | 5 | 89 | 246 | 323 | 514 | 2.15e-23 | 104 |
Find 158 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GAGGGTTAGGTCTGGGATTA+TGG | 0.176925 | 4.2:-34549279 | MS.gene90954:CDS |
AGCCGCTTCATCTACTTTCT+TGG | 0.219661 | 4.2:+34548554 | None:intergenic |
GTTCATTTGGGTTTAGTTCT+TGG | 0.230459 | 4.2:-34549329 | MS.gene90954:CDS |
AGAAACATTTAGTTGTGTTT+TGG | 0.271760 | 4.2:-34549391 | MS.gene90954:CDS |
TGGTGCTAAGTTGATGATTC+CGG | 0.283073 | 4.2:-34549084 | MS.gene90954:CDS |
GATCTCTGCAGCATTATCTT+TGG | 0.294718 | 4.2:+34548278 | None:intergenic |
GCTGGTATGGCGGCTGCTAC+TGG | 0.295017 | 4.2:-34548738 | MS.gene90954:CDS |
TAGGACTATGTGTGTTCATT+TGG | 0.300884 | 4.2:-34549342 | MS.gene90954:CDS |
TTCTGGTTCTGTATCTTTGT+TGG | 0.332866 | 4.2:+34549958 | None:intergenic |
ATGTCTTCACCTATTCTTCT+TGG | 0.341008 | 4.2:+34548184 | None:intergenic |
GAGGAGGGTTGTTATGCCTT+TGG | 0.341470 | 4.2:-34549171 | MS.gene90954:CDS |
ACTCTTGATCCTAAGGTTAC+TGG | 0.345085 | 4.2:-34549653 | MS.gene90954:CDS |
ACCATCAACTTCAGCAACTT+TGG | 0.346981 | 4.2:+34548593 | None:intergenic |
GGAAATGGGGTTTGGGTCCT+AGG | 0.348440 | 4.2:-34548884 | MS.gene90954:CDS |
CGTGCTCTTGAAACTTTAAC+TGG | 0.360375 | 4.2:-34549509 | MS.gene90954:CDS |
TATGGGTGAGAAGGATAATA+TGG | 0.361091 | 4.2:-34549261 | MS.gene90954:CDS |
GGTGCTAAGTTGATGATTCC+GGG | 0.361757 | 4.2:-34549083 | MS.gene90954:CDS |
CAGTTTGAGGTGTCGATTGT+AGG | 0.363827 | 4.2:+34549887 | None:intergenic |
TTTGACTAGTTATAAGAGAT+TGG | 0.369510 | 4.2:-34549141 | MS.gene90954:CDS |
GGGATACTTATCCGAGGAAA+TGG | 0.370351 | 4.2:-34548899 | MS.gene90954:CDS |
GTTTGATCATGAAATCTTGC+TGG | 0.372543 | 4.2:+34549924 | None:intergenic |
TGTCTTCACCTATTCTTCTT+GGG | 0.379511 | 4.2:+34548185 | None:intergenic |
ATTGCTGATTATCTGAAATA+TGG | 0.384973 | 4.2:-34549773 | MS.gene90954:CDS |
AGGACTATGTGTGTTCATTT+GGG | 0.389668 | 4.2:-34549341 | MS.gene90954:CDS |
GGTGGGGACGCCGTGATTGC+TGG | 0.392518 | 4.2:-34548756 | MS.gene90954:CDS |
CAAAGATGCCCAAGAAGAAT+AGG | 0.398166 | 4.2:-34548193 | None:intergenic |
GGTTACTATGCATGATGTTA+TGG | 0.406717 | 4.2:-34549240 | MS.gene90954:CDS |
TTCTCAGACTTGTCCACCTC+AGG | 0.408947 | 4.2:+34548327 | None:intergenic |
TTATCCGAGGAAATGGGGTT+TGG | 0.409185 | 4.2:-34548892 | MS.gene90954:CDS |
CAACAAAATGGGCCAGTTTG+AGG | 0.417673 | 4.2:+34549874 | None:intergenic |
CTGGTATGGCGGCTGCTACT+GGG | 0.423425 | 4.2:-34548737 | MS.gene90954:CDS |
TAAGATCAAGAGGGTGGTTA+TGG | 0.424039 | 4.2:-34548925 | MS.gene90954:CDS |
TTGGACTTCTTAGCAGGAGC+AGG | 0.428365 | 4.2:+34548612 | None:intergenic |
AGGGTTAGGTCTGGGATTAT+GGG | 0.428508 | 4.2:-34549278 | MS.gene90954:CDS |
TGATGATTCCGGGTTTGCTT+AGG | 0.429928 | 4.2:-34549073 | MS.gene90954:CDS |
GCTGATTGCTGCAGGGAAGC+TGG | 0.431749 | 4.2:-34548844 | MS.gene90954:CDS |
TCAAGAGGGTGGTTATGGAT+AGG | 0.433226 | 4.2:-34548920 | MS.gene90954:CDS |
GGATACTTATCCGAGGAAAT+GGG | 0.435995 | 4.2:-34548898 | MS.gene90954:CDS |
AAGAAGAAGGATAAAGAGAA+TGG | 0.436116 | 4.2:-34548492 | MS.gene90954:CDS |
GCTGTGAATGCTATTTGTTA+TGG | 0.437584 | 4.2:-34549104 | MS.gene90954:CDS |
TGAGATGACTACTGCTGTTA+TGG | 0.438520 | 4.2:-34548973 | MS.gene90954:CDS |
TATCCGAGGAAATGGGGTTT+GGG | 0.438978 | 4.2:-34548891 | MS.gene90954:CDS |
TCTTGAGGAGTACTTTCATT+CGG | 0.440773 | 4.2:+34548807 | None:intergenic |
AGGTGAGTGACCAGCTGGAA+GGG | 0.444423 | 4.2:+34549808 | None:intergenic |
AGAGGGTGAGAAGGTTAAGA+AGG | 0.448672 | 4.2:-34548682 | MS.gene90954:CDS |
TTATAAGAGATTGGTCGTTA+AGG | 0.450138 | 4.2:-34549132 | MS.gene90954:CDS |
AGCTTAGGAGGGTTAGGTCT+GGG | 0.450353 | 4.2:-34549286 | MS.gene90954:CDS |
CAAGAGGGTGGTTATGGATA+GGG | 0.456296 | 4.2:-34548919 | MS.gene90954:CDS |
TCTTGCCTTCAGAGAGAGAT+GGG | 0.460200 | 4.2:+34549996 | None:intergenic |
GTGAGGCCGGTACTTATGTT+AGG | 0.460583 | 4.2:-34549361 | MS.gene90954:CDS |
GCAACTTTGGACTTCTTAGC+AGG | 0.461403 | 4.2:+34548606 | None:intergenic |
AAGAAGAAGCTGATTGCTGC+AGG | 0.463700 | 4.2:-34548852 | MS.gene90954:CDS |
GGACGCCGTGATTGCTGGTA+TGG | 0.464126 | 4.2:-34548751 | MS.gene90954:CDS |
CTCTTGATCCTAAGGTTACT+GGG | 0.467083 | 4.2:-34549652 | MS.gene90954:CDS |
CTACAATCGACACCTCAAAC+TGG | 0.467674 | 4.2:-34549886 | MS.gene90954:CDS |
TTGGGTTTAGTTCTTGGTGT+TGG | 0.469171 | 4.2:-34549323 | MS.gene90954:CDS |
GTTCTCATGAGGTTGTTGCT+TGG | 0.470108 | 4.2:-34549718 | MS.gene90954:CDS |
TTCTTGCCTTCAGAGAGAGA+TGG | 0.474253 | 4.2:+34549995 | None:intergenic |
TGCTGTTCCTGATGTTGCTA+AGG | 0.476360 | 4.2:-34549537 | MS.gene90954:CDS |
TCCAAAGTTGCTGAAGTTGA+TGG | 0.479321 | 4.2:-34548594 | MS.gene90954:CDS |
GAGGGTTGTTATGCCTTTGG+AGG | 0.479919 | 4.2:-34549168 | MS.gene90954:CDS |
GGTTTAGTTCTTGGTGTTGG+TGG | 0.480018 | 4.2:-34549320 | MS.gene90954:CDS |
GCAACAACCTCATGAGAACT+AGG | 0.480488 | 4.2:+34549722 | None:intergenic |
TGCAAGAGCTTAGGAGGGTT+AGG | 0.482197 | 4.2:-34549292 | MS.gene90954:CDS |
CAGTGGTACTCTTGATCCTA+AGG | 0.482757 | 4.2:-34549660 | MS.gene90954:CDS |
GTCTGGGATTATGGGTGAGA+AGG | 0.485087 | 4.2:-34549270 | MS.gene90954:CDS |
TGCTCAGTATGTTTATGATA+AGG | 0.488747 | 4.2:-34549216 | MS.gene90954:CDS |
GAGCTTAGGAGGGTTAGGTC+TGG | 0.490050 | 4.2:-34549287 | MS.gene90954:CDS |
TGATGAGGAGAAGGTTGAAA+AGG | 0.490781 | 4.2:-34548454 | MS.gene90954:CDS |
AAGAGTATGTTTGTATTGCT+AGG | 0.493913 | 4.2:-34549568 | MS.gene90954:CDS |
GAGAAGGTTAAGAAGGATGA+TGG | 0.494500 | 4.2:-34548675 | MS.gene90954:CDS |
TCATGAGAACTAGGGTTAGC+AGG | 0.495387 | 4.2:+34549731 | None:intergenic |
AGAAGGTTAAGAAGGATGAT+GGG | 0.497001 | 4.2:-34548674 | MS.gene90954:CDS |
GTGAAATCTCAACAAGGTGC+TGG | 0.499500 | 4.2:-34549593 | MS.gene90954:CDS |
GGTGAGTGACCAGCTGGAAG+GGG | 0.501707 | 4.2:+34549809 | None:intergenic |
CACAAGGAAAAGGGTGAAGA+TGG | 0.502250 | 4.2:-34548417 | MS.gene90954:CDS |
ATCAAATTCCCAGTAACCTT+AGG | 0.503949 | 4.2:+34549644 | None:intergenic |
CGAGCTACCTTAGCAACATC+AGG | 0.506820 | 4.2:+34549530 | None:intergenic |
GTCATATGCAAGAGCTTAGG+AGG | 0.508607 | 4.2:-34549298 | MS.gene90954:CDS |
TATTCTTCGTGTCGAGAAGA+CGG | 0.508925 | 4.2:-34549687 | MS.gene90954:CDS |
GAAAGTAGATGAAGCGGCTG+TGG | 0.509335 | 4.2:-34548550 | MS.gene90954:CDS |
GAAATGGGGTTTGGGTCCTA+GGG | 0.510777 | 4.2:-34548883 | MS.gene90954:CDS |
AAAGAGGTTGCTGATGAAGA+GGG | 0.510792 | 4.2:-34548699 | MS.gene90954:CDS |
TGCTGATGAAGAGGGTGAGA+AGG | 0.511607 | 4.2:-34548691 | MS.gene90954:CDS |
TTGAGAGGTGAGTGACCAGC+TGG | 0.515974 | 4.2:+34549803 | None:intergenic |
ATTCTTCGTGTCGAGAAGAC+GGG | 0.516109 | 4.2:-34549686 | MS.gene90954:CDS |
GTTATGGCTACTTGTGATCA+TGG | 0.518206 | 4.2:-34548957 | MS.gene90954:CDS |
AGAGCGATGAGACTTATTTG+AGG | 0.518362 | 4.2:-34549190 | MS.gene90954:CDS |
GTGGTCATATGCAAGAGCTT+AGG | 0.520527 | 4.2:-34549301 | MS.gene90954:CDS |
AGAGAGAGATGGGGACATGA+TGG | 0.524072 | 4.2:+34550006 | None:intergenic |
GTACTCCTCAAGAGTGGATG+AGG | 0.525760 | 4.2:-34548797 | MS.gene90954:CDS |
CGATGAGACTTATTTGAGGA+GGG | 0.530709 | 4.2:-34549186 | MS.gene90954:CDS |
GACCGCCTCAATGTCCGTAC+TGG | 0.533848 | 4.2:-34549842 | MS.gene90954:CDS |
TATTTCAGATAATCAGCAAT+GGG | 0.541396 | 4.2:+34549776 | None:intergenic |
TGAAGTCGGTTCGCCTGAGG+TGG | 0.545768 | 4.2:-34548340 | MS.gene90954:CDS |
TGCATCTTCTGATGAGGAGA+AGG | 0.555918 | 4.2:-34548463 | MS.gene90954:CDS |
AGCCGCCATACCAGCAATCA+CGG | 0.555963 | 4.2:+34548746 | None:intergenic |
TTCTCAAACCTAAGCAAACC+CGG | 0.556341 | 4.2:+34549065 | None:intergenic |
GTGAGTGACCAGCTGGAAGG+GGG | 0.556834 | 4.2:+34549810 | None:intergenic |
TGAAGATGGTTCTCCTGAAG+TGG | 0.558835 | 4.2:-34548403 | MS.gene90954:CDS |
AAGGGTGAAGCTATTGCCCT+TGG | 0.558857 | 4.2:-34549002 | MS.gene90954:CDS |
TTAAGAAGGATGATGGGGAA+GGG | 0.559638 | 4.2:-34548668 | MS.gene90954:CDS |
GGACCCAAACCCCATTTCCT+CGG | 0.561902 | 4.2:+34548888 | None:intergenic |
GTTAAGAAGGATGATGGGGA+AGG | 0.562363 | 4.2:-34548669 | MS.gene90954:CDS |
GACCAAGAAAGTAGATGAAG+CGG | 0.563615 | 4.2:-34548556 | MS.gene90954:CDS |
CTGCTGTTAAGAGACAACTT+AGG | 0.565713 | 4.2:-34549457 | MS.gene90954:CDS |
ATGTCCCCATCTCTCTCTGA+AGG | 0.569959 | 4.2:-34550001 | MS.gene90954:CDS |
AGTAGATGAAGCGGCTGTGG+AGG | 0.570309 | 4.2:-34548547 | MS.gene90954:CDS |
TGGACTTCTTAGCAGGAGCA+GGG | 0.572350 | 4.2:+34548613 | None:intergenic |
GCAGGGAAGCTGGATAAGCA+TGG | 0.572801 | 4.2:-34548834 | MS.gene90954:CDS |
CGCCGTGATTGCTGGTATGG+CGG | 0.577954 | 4.2:-34548748 | MS.gene90954:CDS |
TTCTTCTTCATAGAAGCCCT+AGG | 0.578222 | 4.2:+34548867 | None:intergenic |
ATAAGCACAACCTCCTCACC+AGG | 0.579419 | 4.2:+34549032 | None:intergenic |
CACAAGGAAACGAGTGAAGT+CGG | 0.580195 | 4.2:-34548354 | MS.gene90954:CDS |
GCGATGAGACTTATTTGAGG+AGG | 0.584233 | 4.2:-34549187 | MS.gene90954:CDS |
AAGGGCAATAGCTTCACCCT+TGG | 0.584541 | 4.2:+34549004 | None:intergenic |
CAGGGAAGCTGGATAAGCAT+GGG | 0.585096 | 4.2:-34548833 | MS.gene90954:CDS |
TCAGCAATGGGTCGTTTGAG+AGG | 0.590490 | 4.2:+34549788 | None:intergenic |
GAAAGAGGTTGCTGATGAAG+AGG | 0.591372 | 4.2:-34548700 | MS.gene90954:CDS |
GAGGTGAGTGACCAGCTGGA+AGG | 0.595183 | 4.2:+34549807 | None:intergenic |
CATAGTCCTAACATAAGTAC+CGG | 0.600318 | 4.2:+34549355 | None:intergenic |
ACATTCCTCATCCACTCTTG+AGG | 0.608152 | 4.2:+34548792 | None:intergenic |
GAAGGTTAAGAAGGATGATG+GGG | 0.610370 | 4.2:-34548673 | MS.gene90954:CDS |
CTAGTCAAAAGAACCTCCAA+AGG | 0.615878 | 4.2:+34549155 | None:intergenic |
TATTGACAGAGCAACGAGGT+TGG | 0.616767 | 4.2:-34549615 | MS.gene90954:CDS |
TGAGTGACCAGCTGGAAGGG+GGG | 0.617538 | 4.2:+34549811 | None:intergenic |
GATACTTATCCGAGGAAATG+GGG | 0.621162 | 4.2:-34548897 | MS.gene90954:CDS |
AGTGACCAGTACGGACATTG+AGG | 0.623451 | 4.2:+34549837 | None:intergenic |
CTCTTAACAGCAGAAATCAA+AGG | 0.625059 | 4.2:+34549467 | None:intergenic |
ATATTTCAGATAATCAGCAA+TGG | 0.627850 | 4.2:+34549775 | None:intergenic |
TGCAGAGATCAGTAACGGAA+AGG | 0.627993 | 4.2:-34548265 | MS.gene90954:CDS |
ATGAAAGTACTCCTCAAGAG+TGG | 0.631391 | 4.2:-34548803 | MS.gene90954:CDS |
GTATTGTTGCTAAGATCAAG+AGG | 0.631960 | 4.2:-34548935 | MS.gene90954:CDS |
CAACAACCTCATGAGAACTA+GGG | 0.632219 | 4.2:+34549723 | None:intergenic |
GAGTGAAGTCGGTTCGCCTG+AGG | 0.633165 | 4.2:-34548343 | MS.gene90954:CDS |
TGCTAACCCTAGTTCTCATG+AGG | 0.636176 | 4.2:-34549729 | MS.gene90954:CDS |
AATGCTGCAGAGATCAGTAA+CGG | 0.637087 | 4.2:-34548270 | MS.gene90954:CDS |
TAGTCATCTCAGCAATACCA+AGG | 0.640655 | 4.2:+34548985 | None:intergenic |
AGCTGCTGCATCTTCTGATG+AGG | 0.641491 | 4.2:-34548469 | MS.gene90954:CDS |
GACTGAAGATGTGAAGAAAG+AGG | 0.647185 | 4.2:-34548715 | MS.gene90954:CDS |
TTTGAGAATGATATTGAACC+TGG | 0.653930 | 4.2:-34549050 | MS.gene90954:CDS |
TTAACAGCAGAAATCAAAGG+TGG | 0.656440 | 4.2:+34549470 | None:intergenic |
AGAAGAAGCTGATTGCTGCA+GGG | 0.658320 | 4.2:-34548851 | MS.gene90954:CDS |
GGTTGTGCTTATGACTACCA+AGG | 0.659102 | 4.2:-34549021 | MS.gene90954:CDS |
TGTTGCTAAGATCAAGAGGG+TGG | 0.661471 | 4.2:-34548931 | MS.gene90954:CDS |
CTTGCCTTCAGAGAGAGATG+GGG | 0.670821 | 4.2:+34549997 | None:intergenic |
GAATGATATTGAACCTGGTG+AGG | 0.674019 | 4.2:-34549045 | MS.gene90954:CDS |
ATCACGGCGTCCCCACCAGT+AGG | 0.679551 | 4.2:+34548762 | None:intergenic |
AGTCATCTCAGCAATACCAA+GGG | 0.685774 | 4.2:+34548986 | None:intergenic |
TGATATTGAACCTGGTGAGG+AGG | 0.686276 | 4.2:-34549042 | MS.gene90954:CDS |
GTTGTGCTTATGACTACCAA+GGG | 0.691718 | 4.2:-34549020 | MS.gene90954:CDS |
GACCAGTACGGACATTGAGG+CGG | 0.696590 | 4.2:+34549840 | None:intergenic |
TATTGTTGCTAAGATCAAGA+GGG | 0.700862 | 4.2:-34548934 | MS.gene90954:CDS |
TGGATAGGGATACTTATCCG+AGG | 0.711704 | 4.2:-34548905 | MS.gene90954:CDS |
TCATATGCAAGAGCTTAGGA+GGG | 0.728673 | 4.2:-34549297 | MS.gene90954:CDS |
AGGTTGGTGAAATCTCAACA+AGG | 0.729026 | 4.2:-34549599 | MS.gene90954:CDS |
GTCGAGAAGACGGGTCACAG+TGG | 0.744339 | 4.2:-34549677 | MS.gene90954:CDS |
TTTGTATTGACAGAGCAACG+AGG | 0.787641 | 4.2:-34549619 | MS.gene90954:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
! | AAAGAAGAAGAAAAAGAAGA+AGG | - | chr4.2:34549702-34549721 | MS.gene90954:CDS | 25.0% |
! | ATATTTCAGATAATCAGCAA+TGG | + | chr4.2:34548435-34548454 | None:intergenic | 25.0% |
! | TATTTCAGATAATCAGCAAT+GGG | + | chr4.2:34548434-34548453 | None:intergenic | 25.0% |
!! | AGAAACATTTAGTTGTGTTT+TGG | - | chr4.2:34548816-34548835 | MS.gene90954:CDS | 25.0% |
!! | ATTGCTGATTATCTGAAATA+TGG | - | chr4.2:34548434-34548453 | MS.gene90954:CDS | 25.0% |
!! | TTTGACTAGTTATAAGAGAT+TGG | - | chr4.2:34549066-34549085 | MS.gene90954:CDS | 25.0% |
!!! | TCGTAGTTTTTCAACAAAAT+GGG | + | chr4.2:34548347-34548366 | None:intergenic | 25.0% |
AAGAAGAAGGATAAAGAGAA+TGG | - | chr4.2:34549715-34549734 | MS.gene90954:CDS | 30.0% | |
TATTGTTGCTAAGATCAAGA+GGG | - | chr4.2:34549273-34549292 | MS.gene90954:CDS | 30.0% | |
TGCTCAGTATGTTTATGATA+AGG | - | chr4.2:34548991-34549010 | MS.gene90954:CDS | 30.0% | |
TTTGAGAATGATATTGAACC+TGG | - | chr4.2:34549157-34549176 | MS.gene90954:CDS | 30.0% | |
! | AAAAAGAAGCACAAGGAAAA+GGG | - | chr4.2:34549781-34549800 | MS.gene90954:CDS | 30.0% |
! | AAGAGTATGTTTGTATTGCT+AGG | - | chr4.2:34548639-34548658 | MS.gene90954:CDS | 30.0% |
! | ATTGTAGGTGTAAGTTTTTC+AGG | + | chr4.2:34548308-34548327 | None:intergenic | 30.0% |
! | TTATAAGAGATTGGTCGTTA+AGG | - | chr4.2:34549075-34549094 | MS.gene90954:CDS | 30.0% |
!! | GTCGTAGTTTTTCAACAAAA+TGG | + | chr4.2:34548348-34548367 | None:intergenic | 30.0% |
AGAAGGTTAAGAAGGATGAT+GGG | - | chr4.2:34549533-34549552 | MS.gene90954:CDS | 35.0% | |
AGGACTATGTGTGTTCATTT+GGG | - | chr4.2:34548866-34548885 | MS.gene90954:CDS | 35.0% | |
ATCAAATTCCCAGTAACCTT+AGG | + | chr4.2:34548566-34548585 | None:intergenic | 35.0% | |
CATAGTCCTAACATAAGTAC+CGG | + | chr4.2:34548855-34548874 | None:intergenic | 35.0% | |
CTCTTAACAGCAGAAATCAA+AGG | + | chr4.2:34548743-34548762 | None:intergenic | 35.0% | |
GGTTACTATGCATGATGTTA+TGG | - | chr4.2:34548967-34548986 | MS.gene90954:CDS | 35.0% | |
GTATTGTTGCTAAGATCAAG+AGG | - | chr4.2:34549272-34549291 | MS.gene90954:CDS | 35.0% | |
GTTTGATCATGAAATCTTGC+TGG | + | chr4.2:34548286-34548305 | None:intergenic | 35.0% | |
TAGGACTATGTGTGTTCATT+TGG | - | chr4.2:34548865-34548884 | MS.gene90954:CDS | 35.0% | |
TATGGGTGAGAAGGATAATA+TGG | - | chr4.2:34548946-34548965 | MS.gene90954:CDS | 35.0% | |
TTAACAGCAGAAATCAAAGG+TGG | + | chr4.2:34548740-34548759 | None:intergenic | 35.0% | |
! | GAAAAAGAAGCACAAGGAAA+AGG | - | chr4.2:34549780-34549799 | MS.gene90954:CDS | 35.0% |
! | GAAGAAGAAAAAGAAGCACA+AGG | - | chr4.2:34549837-34549856 | MS.gene90954:CDS | 35.0% |
! | GCTGTGAATGCTATTTGTTA+TGG | - | chr4.2:34549103-34549122 | MS.gene90954:CDS | 35.0% |
!! | GTTCATTTGGGTTTAGTTCT+TGG | - | chr4.2:34548878-34548897 | MS.gene90954:CDS | 35.0% |
!! | TCTTGAGGAGTACTTTCATT+CGG | + | chr4.2:34549403-34549422 | None:intergenic | 35.0% |
!! | TTCTGGTTCTGTATCTTTGT+TGG | + | chr4.2:34548252-34548271 | None:intergenic | 35.0% |
!!! | AATGTTGTTTTACCTACTGG+TGG | - | chr4.2:34549433-34549452 | MS.gene90954:CDS | 35.0% |
!!! | AGGAATGTTGTTTTACCTAC+TGG | - | chr4.2:34549430-34549449 | MS.gene90954:CDS | 35.0% |
!!! | ATGAAATCTTGCTGGTTTTG+TGG | + | chr4.2:34548278-34548297 | None:intergenic | 35.0% |
!!! | ATGTTGTTTTACCTACTGGT+GGG | - | chr4.2:34549434-34549453 | MS.gene90954:CDS | 35.0% |
AAAGAGGTTGCTGATGAAGA+GGG | - | chr4.2:34549508-34549527 | MS.gene90954:CDS | 40.0% | |
AATGCTGCAGAGATCAGTAA+CGG | - | chr4.2:34549937-34549956 | MS.gene90954:CDS | 40.0% | |
ACCATCAACTTCAGCAACTT+TGG | + | chr4.2:34549617-34549636 | None:intergenic | 40.0% | |
ACTCTTGATCCTAAGGTTAC+TGG | - | chr4.2:34548554-34548573 | MS.gene90954:CDS | 40.0% | |
AGAGCGATGAGACTTATTTG+AGG | - | chr4.2:34549017-34549036 | MS.gene90954:CDS | 40.0% | |
AGTCATCTCAGCAATACCAA+GGG | + | chr4.2:34549224-34549243 | None:intergenic | 40.0% | |
CAACAACCTCATGAGAACTA+GGG | + | chr4.2:34548487-34548506 | None:intergenic | 40.0% | |
CGATGAGACTTATTTGAGGA+GGG | - | chr4.2:34549021-34549040 | MS.gene90954:CDS | 40.0% | |
CGTGCTCTTGAAACTTTAAC+TGG | - | chr4.2:34548698-34548717 | MS.gene90954:CDS | 40.0% | |
CTAGTCAAAAGAACCTCCAA+AGG | + | chr4.2:34549055-34549074 | None:intergenic | 40.0% | |
CTCTTGATCCTAAGGTTACT+GGG | - | chr4.2:34548555-34548574 | MS.gene90954:CDS | 40.0% | |
CTGCTGTTAAGAGACAACTT+AGG | - | chr4.2:34548750-34548769 | MS.gene90954:CDS | 40.0% | |
GAAGGTTAAGAAGGATGATG+GGG | - | chr4.2:34549534-34549553 | MS.gene90954:CDS | 40.0% | |
GAATGATATTGAACCTGGTG+AGG | - | chr4.2:34549162-34549181 | MS.gene90954:CDS | 40.0% | |
GACCAAGAAAGTAGATGAAG+CGG | - | chr4.2:34549651-34549670 | MS.gene90954:CDS | 40.0% | |
GACTGAAGATGTGAAGAAAG+AGG | - | chr4.2:34549492-34549511 | MS.gene90954:CDS | 40.0% | |
GAGAAGGTTAAGAAGGATGA+TGG | - | chr4.2:34549532-34549551 | MS.gene90954:CDS | 40.0% | |
GATACTTATCCGAGGAAATG+GGG | - | chr4.2:34549310-34549329 | MS.gene90954:CDS | 40.0% | |
GATCTCTGCAGCATTATCTT+TGG | + | chr4.2:34549932-34549951 | None:intergenic | 40.0% | |
GGATACTTATCCGAGGAAAT+GGG | - | chr4.2:34549309-34549328 | MS.gene90954:CDS | 40.0% | |
GTTATGGCTACTTGTGATCA+TGG | - | chr4.2:34549250-34549269 | MS.gene90954:CDS | 40.0% | |
GTTGTGCTTATGACTACCAA+GGG | - | chr4.2:34549187-34549206 | MS.gene90954:CDS | 40.0% | |
TAAGATCAAGAGGGTGGTTA+TGG | - | chr4.2:34549282-34549301 | MS.gene90954:CDS | 40.0% | |
TAGTCATCTCAGCAATACCA+AGG | + | chr4.2:34549225-34549244 | None:intergenic | 40.0% | |
TATTCTTCGTGTCGAGAAGA+CGG | - | chr4.2:34548520-34548539 | MS.gene90954:CDS | 40.0% | |
TCATATGCAAGAGCTTAGGA+GGG | - | chr4.2:34548910-34548929 | MS.gene90954:CDS | 40.0% | |
TCCAAAGTTGCTGAAGTTGA+TGG | - | chr4.2:34549613-34549632 | MS.gene90954:CDS | 40.0% | |
TGAGATGACTACTGCTGTTA+TGG | - | chr4.2:34549234-34549253 | MS.gene90954:CDS | 40.0% | |
TGATGAGGAGAAGGTTGAAA+AGG | - | chr4.2:34549753-34549772 | MS.gene90954:CDS | 40.0% | |
TTCTCAAACCTAAGCAAACC+CGG | + | chr4.2:34549145-34549164 | None:intergenic | 40.0% | |
TTCTTCTTCATAGAAGCCCT+AGG | + | chr4.2:34549343-34549362 | None:intergenic | 40.0% | |
! | GGAGAAGAAAAAGAAGCACA+AGG | - | chr4.2:34549774-34549793 | MS.gene90954:CDS | 40.0% |
! | TTCTCAGACTTTTCCACTTC+AGG | + | chr4.2:34549820-34549839 | None:intergenic | 40.0% |
! | TTTGTATTGACAGAGCAACG+AGG | - | chr4.2:34548588-34548607 | MS.gene90954:CDS | 40.0% |
!! | AGGTTGGTGAAATCTCAACA+AGG | - | chr4.2:34548608-34548627 | MS.gene90954:CDS | 40.0% |
!! | ATGAAAGTACTCCTCAAGAG+TGG | - | chr4.2:34549404-34549423 | MS.gene90954:CDS | 40.0% |
!! | TGGTGCTAAGTTGATGATTC+CGG | - | chr4.2:34549123-34549142 | MS.gene90954:CDS | 40.0% |
!! | TGTGTTTTGGATTTCGTGTG+AGG | - | chr4.2:34548829-34548848 | MS.gene90954:CDS | 40.0% |
!! | TTAAGAAGGATGATGGGGAA+GGG | - | chr4.2:34549539-34549558 | MS.gene90954:CDS | 40.0% |
!! | TTGGGTTTAGTTCTTGGTGT+TGG | - | chr4.2:34548884-34548903 | MS.gene90954:CDS | 40.0% |
!!! | TGTTGTTTTACCTACTGGTG+GGG | - | chr4.2:34549435-34549454 | MS.gene90954:CDS | 40.0% |
AAGAAGAAGCTGATTGCTGC+AGG | - | chr4.2:34549355-34549374 | MS.gene90954:CDS | 45.0% | |
ACATTCCTCATCCACTCTTG+AGG | + | chr4.2:34549418-34549437 | None:intergenic | 45.0% | |
AGAAGAAGCTGATTGCTGCA+GGG | - | chr4.2:34549356-34549375 | MS.gene90954:CDS | 45.0% | |
AGAGGGTGAGAAGGTTAAGA+AGG | - | chr4.2:34549525-34549544 | MS.gene90954:CDS | 45.0% | |
AGCCGCTTCATCTACTTTCT+TGG | + | chr4.2:34549656-34549675 | None:intergenic | 45.0% | |
ATTCTTCGTGTCGAGAAGAC+GGG | - | chr4.2:34548521-34548540 | MS.gene90954:CDS | 45.0% | |
CAACAAAATGGGCCAGTTTG+AGG | + | chr4.2:34548336-34548355 | None:intergenic | 45.0% | |
CAAGAGGGTGGTTATGGATA+GGG | - | chr4.2:34549288-34549307 | MS.gene90954:CDS | 45.0% | |
CACAAGGAAAAGGGTGAAGA+TGG | - | chr4.2:34549790-34549809 | MS.gene90954:CDS | 45.0% | |
CACAAGGAAACGAGTGAAGT+CGG | - | chr4.2:34549853-34549872 | MS.gene90954:CDS | 45.0% | |
CAGTGGTACTCTTGATCCTA+AGG | - | chr4.2:34548547-34548566 | MS.gene90954:CDS | 45.0% | |
CTACAATCGACACCTCAAAC+TGG | - | chr4.2:34548321-34548340 | MS.gene90954:CDS | 45.0% | |
GAAAGAGGTTGCTGATGAAG+AGG | - | chr4.2:34549507-34549526 | MS.gene90954:CDS | 45.0% | |
GCAACAACCTCATGAGAACT+AGG | + | chr4.2:34548488-34548507 | None:intergenic | 45.0% | |
GCAACTTTGGACTTCTTAGC+AGG | + | chr4.2:34549604-34549623 | None:intergenic | 45.0% | |
GCGATGAGACTTATTTGAGG+AGG | - | chr4.2:34549020-34549039 | MS.gene90954:CDS | 45.0% | |
GGGATACTTATCCGAGGAAA+TGG | - | chr4.2:34549308-34549327 | MS.gene90954:CDS | 45.0% | |
GGTTGTGCTTATGACTACCA+AGG | - | chr4.2:34549186-34549205 | MS.gene90954:CDS | 45.0% | |
GTCATATGCAAGAGCTTAGG+AGG | - | chr4.2:34548909-34548928 | MS.gene90954:CDS | 45.0% | |
GTGAAATCTCAACAAGGTGC+TGG | - | chr4.2:34548614-34548633 | MS.gene90954:CDS | 45.0% | |
GTGGTCATATGCAAGAGCTT+AGG | - | chr4.2:34548906-34548925 | MS.gene90954:CDS | 45.0% | |
GTTCTCATGAGGTTGTTGCT+TGG | - | chr4.2:34548489-34548508 | MS.gene90954:CDS | 45.0% | |
TATCCGAGGAAATGGGGTTT+GGG | - | chr4.2:34549316-34549335 | MS.gene90954:CDS | 45.0% | |
TATTGACAGAGCAACGAGGT+TGG | - | chr4.2:34548592-34548611 | MS.gene90954:CDS | 45.0% | |
TCAAGAGGGTGGTTATGGAT+AGG | - | chr4.2:34549287-34549306 | MS.gene90954:CDS | 45.0% | |
TCTTGCCTTCAGAGAGAGAT+GGG | + | chr4.2:34548214-34548233 | None:intergenic | 45.0% | |
TGAAGATGGTTCTCCTGAAG+TGG | - | chr4.2:34549804-34549823 | MS.gene90954:CDS | 45.0% | |
TGATATTGAACCTGGTGAGG+AGG | - | chr4.2:34549165-34549184 | MS.gene90954:CDS | 45.0% | |
TGCATCTTCTGATGAGGAGA+AGG | - | chr4.2:34549744-34549763 | MS.gene90954:CDS | 45.0% | |
TGCTGTTCCTGATGTTGCTA+AGG | - | chr4.2:34548670-34548689 | MS.gene90954:CDS | 45.0% | |
TGGATAGGGATACTTATCCG+AGG | - | chr4.2:34549302-34549321 | MS.gene90954:CDS | 45.0% | |
TGTTGCTAAGATCAAGAGGG+TGG | - | chr4.2:34549276-34549295 | MS.gene90954:CDS | 45.0% | |
TTATCCGAGGAAATGGGGTT+TGG | - | chr4.2:34549315-34549334 | MS.gene90954:CDS | 45.0% | |
TTCTTGCCTTCAGAGAGAGA+TGG | + | chr4.2:34548215-34548234 | None:intergenic | 45.0% | |
! | AGGGTTAGGTCTGGGATTAT+GGG | - | chr4.2:34548929-34548948 | MS.gene90954:CDS | 45.0% |
! | TCATGAGAACTAGGGTTAGC+AGG | + | chr4.2:34548479-34548498 | None:intergenic | 45.0% |
! | TGATGATTCCGGGTTTGCTT+AGG | - | chr4.2:34549134-34549153 | MS.gene90954:CDS | 45.0% |
! | TGCAGAGATCAGTAACGGAA+AGG | - | chr4.2:34549942-34549961 | MS.gene90954:CDS | 45.0% |
! | TGCTAACCCTAGTTCTCATG+AGG | - | chr4.2:34548478-34548497 | MS.gene90954:CDS | 45.0% |
! | TTTTGGATTTCGTGTGAGGC+CGG | - | chr4.2:34548833-34548852 | MS.gene90954:CDS | 45.0% |
!! | CAGTTTGAGGTGTCGATTGT+AGG | + | chr4.2:34548323-34548342 | None:intergenic | 45.0% |
!! | GGTGCTAAGTTGATGATTCC+GGG | - | chr4.2:34549124-34549143 | MS.gene90954:CDS | 45.0% |
!! | GGTTTAGTTCTTGGTGTTGG+TGG | - | chr4.2:34548887-34548906 | MS.gene90954:CDS | 45.0% |
!! | GTTAAGAAGGATGATGGGGA+AGG | - | chr4.2:34549538-34549557 | MS.gene90954:CDS | 45.0% |
!!! | TGCTGGTTTTGTGGTTGTTC+TGG | + | chr4.2:34548269-34548288 | None:intergenic | 45.0% |
AAGGGCAATAGCTTCACCCT+TGG | + | chr4.2:34549206-34549225 | None:intergenic | 50.0% | |
AAGGGTGAAGCTATTGCCCT+TGG | - | chr4.2:34549205-34549224 | MS.gene90954:CDS | 50.0% | |
AGAGAGAGATGGGGACATGA+TGG | + | chr4.2:34548204-34548223 | None:intergenic | 50.0% | |
AGCTGCTGCATCTTCTGATG+AGG | - | chr4.2:34549738-34549757 | MS.gene90954:CDS | 50.0% | |
AGCTTAGGAGGGTTAGGTCT+GGG | - | chr4.2:34548921-34548940 | MS.gene90954:CDS | 50.0% | |
AGTGACCAGTACGGACATTG+AGG | + | chr4.2:34548373-34548392 | None:intergenic | 50.0% | |
ATAAGCACAACCTCCTCACC+AGG | + | chr4.2:34549178-34549197 | None:intergenic | 50.0% | |
ATGTCCCCATCTCTCTCTGA+AGG | - | chr4.2:34548206-34548225 | MS.gene90954:CDS | 50.0% | |
CAGGGAAGCTGGATAAGCAT+GGG | - | chr4.2:34549374-34549393 | MS.gene90954:CDS | 50.0% | |
CGAGCTACCTTAGCAACATC+AGG | + | chr4.2:34548680-34548699 | None:intergenic | 50.0% | |
CTTGCCTTCAGAGAGAGATG+GGG | + | chr4.2:34548213-34548232 | None:intergenic | 50.0% | |
GAAAGTAGATGAAGCGGCTG+TGG | - | chr4.2:34549657-34549676 | MS.gene90954:CDS | 50.0% | |
GAAATGGGGTTTGGGTCCTA+GGG | - | chr4.2:34549324-34549343 | MS.gene90954:CDS | 50.0% | |
GAGGAGGGTTGTTATGCCTT+TGG | - | chr4.2:34549036-34549055 | MS.gene90954:CDS | 50.0% | |
GAGGGTTGTTATGCCTTTGG+AGG | - | chr4.2:34549039-34549058 | MS.gene90954:CDS | 50.0% | |
GTACTCCTCAAGAGTGGATG+AGG | - | chr4.2:34549410-34549429 | MS.gene90954:CDS | 50.0% | |
GTGAGGCCGGTACTTATGTT+AGG | - | chr4.2:34548846-34548865 | MS.gene90954:CDS | 50.0% | |
TCAGCAATGGGTCGTTTGAG+AGG | + | chr4.2:34548422-34548441 | None:intergenic | 50.0% | |
TGCAAGAGCTTAGGAGGGTT+AGG | - | chr4.2:34548915-34548934 | MS.gene90954:CDS | 50.0% | |
TGCTGATGAAGAGGGTGAGA+AGG | - | chr4.2:34549516-34549535 | MS.gene90954:CDS | 50.0% | |
TGGACTTCTTAGCAGGAGCA+GGG | + | chr4.2:34549597-34549616 | None:intergenic | 50.0% | |
TTCTCAGACTTGTCCACCTC+AGG | + | chr4.2:34549883-34549902 | None:intergenic | 50.0% | |
TTGGACTTCTTAGCAGGAGC+AGG | + | chr4.2:34549598-34549617 | None:intergenic | 50.0% | |
! | GAGGGTTAGGTCTGGGATTA+TGG | - | chr4.2:34548928-34548947 | MS.gene90954:CDS | 50.0% |
! | GTCTGGGATTATGGGTGAGA+AGG | - | chr4.2:34548937-34548956 | MS.gene90954:CDS | 50.0% |
AGCCGCCATACCAGCAATCA+CGG | + | chr4.2:34549464-34549483 | None:intergenic | 55.0% | |
AGGTGAGTGACCAGCTGGAA+GGG | + | chr4.2:34548402-34548421 | None:intergenic | 55.0% | |
AGTAGATGAAGCGGCTGTGG+AGG | - | chr4.2:34549660-34549679 | MS.gene90954:CDS | 55.0% | |
GACCAGTACGGACATTGAGG+CGG | + | chr4.2:34548370-34548389 | None:intergenic | 55.0% | |
GAGCTTAGGAGGGTTAGGTC+TGG | - | chr4.2:34548920-34548939 | MS.gene90954:CDS | 55.0% | |
GCAGGGAAGCTGGATAAGCA+TGG | - | chr4.2:34549373-34549392 | MS.gene90954:CDS | 55.0% | |
GGAAATGGGGTTTGGGTCCT+AGG | - | chr4.2:34549323-34549342 | MS.gene90954:CDS | 55.0% | |
GGACCCAAACCCCATTTCCT+CGG | + | chr4.2:34549322-34549341 | None:intergenic | 55.0% | |
TTGAGAGGTGAGTGACCAGC+TGG | + | chr4.2:34548407-34548426 | None:intergenic | 55.0% | |
! | GGGGGGTATAGTGACCAGTA+CGG | + | chr4.2:34548382-34548401 | None:intergenic | 55.0% |
CACTATACCCCCCTTCCAGC+TGG | - | chr4.2:34548389-34548408 | MS.gene90954:CDS | 60.0% | |
CGCCGTGATTGCTGGTATGG+CGG | - | chr4.2:34549459-34549478 | MS.gene90954:CDS | 60.0% | |
CTGGTATGGCGGCTGCTACT+GGG | - | chr4.2:34549470-34549489 | MS.gene90954:CDS | 60.0% | |
GACCGCCTCAATGTCCGTAC+TGG | - | chr4.2:34548365-34548384 | MS.gene90954:CDS | 60.0% | |
GAGGTGAGTGACCAGCTGGA+AGG | + | chr4.2:34548403-34548422 | None:intergenic | 60.0% | |
GCTGATTGCTGCAGGGAAGC+TGG | - | chr4.2:34549363-34549382 | MS.gene90954:CDS | 60.0% | |
GGACGCCGTGATTGCTGGTA+TGG | - | chr4.2:34549456-34549475 | MS.gene90954:CDS | 60.0% | |
GGTGAGTGACCAGCTGGAAG+GGG | + | chr4.2:34548401-34548420 | None:intergenic | 60.0% | |
GTCGAGAAGACGGGTCACAG+TGG | - | chr4.2:34548530-34548549 | MS.gene90954:CDS | 60.0% | |
GTGAGTGACCAGCTGGAAGG+GGG | + | chr4.2:34548400-34548419 | None:intergenic | 60.0% | |
TGAGTGACCAGCTGGAAGGG+GGG | + | chr4.2:34548399-34548418 | None:intergenic | 60.0% | |
!! | GAGTGAAGTCGGTTCGCCTG+AGG | - | chr4.2:34549864-34549883 | MS.gene90954:CDS | 60.0% |
!! | TGAAGTCGGTTCGCCTGAGG+TGG | - | chr4.2:34549867-34549886 | MS.gene90954:CDS | 60.0% |
ATCACGGCGTCCCCACCAGT+AGG | + | chr4.2:34549448-34549467 | None:intergenic | 65.0% | |
GCTGGTATGGCGGCTGCTAC+TGG | - | chr4.2:34549469-34549488 | MS.gene90954:CDS | 65.0% | |
GGTGGGGACGCCGTGATTGC+TGG | - | chr4.2:34549451-34549470 | MS.gene90954:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.2 | gene | 34548194 | 34550035 | 34548194 | ID=MS.gene90954 |
chr4.2 | mRNA | 34548194 | 34550035 | 34548194 | ID=MS.gene90954.t1;Parent=MS.gene90954 |
chr4.2 | exon | 34548194 | 34550035 | 34548194 | ID=MS.gene90954.t1.exon1;Parent=MS.gene90954.t1 |
chr4.2 | CDS | 34548194 | 34550035 | 34548194 | ID=cds.MS.gene90954.t1;Parent=MS.gene90954.t1 |
Gene Sequence |
Protein sequence |