Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067809.t1 | XP_013449501.1 | 98.7 | 151 | 2 | 0 | 1 | 151 | 1 | 151 | 3.00E-56 | 228.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067809.t1 | Q8VZT0 | 87.7 | 154 | 19 | 0 | 1 | 154 | 1 | 154 | 1.8e-49 | 197.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067809.t1 | A0A072U1E4 | 98.7 | 151 | 2 | 0 | 1 | 151 | 1 | 151 | 2.1e-56 | 228.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049361 | MS.gene067809 | 0.866606 | 2.52E-65 | -1.69E-46 |
| MS.gene051984 | MS.gene067809 | 0.815691 | 8.12E-52 | -1.69E-46 |
| MS.gene052664 | MS.gene067809 | 0.823273 | 1.51E-53 | -1.69E-46 |
| MS.gene056387 | MS.gene067809 | -0.802889 | 4.53E-49 | -1.69E-46 |
| MS.gene060483 | MS.gene067809 | 0.824901 | 6.28E-54 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067809.t1 | MTR_7g085640 | 98.020 | 202 | 4 | 0 | 1 | 202 | 1 | 202 | 4.71e-129 | 361 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067809.t1 | AT3G03920 | 80.921 | 152 | 29 | 0 | 51 | 202 | 51 | 202 | 7.91e-66 | 201 |
| MS.gene067809.t1 | AT5G18180 | 83.962 | 106 | 16 | 1 | 51 | 156 | 38 | 142 | 4.76e-59 | 184 |
Find 80 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGGACGTGGTGGTGGTTTC+AGG | 0.136974 | 7.1:+19456101 | MS.gene067809:CDS |
| GGGAAAGTTGATGAAATATT+TGG | 0.233909 | 7.1:+19454795 | MS.gene067809:CDS |
| CCACGGCCGCCACCTCTTGC+AGG | 0.283854 | 7.1:-19454401 | None:intergenic |
| CAGGGGAAGGGGAAGATTCT+AGG | 0.312093 | 7.1:+19456120 | MS.gene067809:CDS |
| GGCCGTGGAGGCGGTAGTTT+TGG | 0.321118 | 7.1:+19456004 | MS.gene067809:CDS |
| GAGGACCTCTTCCACCCCTT+GGG | 0.337023 | 7.1:-19456072 | None:intergenic |
| AGAGGTGGCGGCCGTGGTGG+TGG | 0.384933 | 7.1:+19454407 | MS.gene067809:CDS |
| GCTAGAGGCAAGAGCTTCCT+AGG | 0.395733 | 7.1:-19454995 | None:intergenic |
| CTGCAAAACATGACTCAGAT+TGG | 0.398576 | 7.1:+19454774 | MS.gene067809:CDS |
| CCTGCAAGAGGTGGCGGCCG+TGG | 0.400024 | 7.1:+19454401 | MS.gene067809:CDS |
| GGAGGACCTCTTCCACCCCT+TGG | 0.406720 | 7.1:-19456073 | None:intergenic |
| AGAGGTGGAGGCCGTGGAGG+CGG | 0.421112 | 7.1:+19455995 | MS.gene067809:CDS |
| GTTGCTACTTCATATGCATC+TGG | 0.429953 | 7.1:+19454953 | MS.gene067809:CDS |
| GGTGGTAGAGGTGGAGGCCG+TGG | 0.431868 | 7.1:+19455989 | MS.gene067809:CDS |
| TTCGGCGGTGGACGTGGTGG+TGG | 0.435593 | 7.1:+19454506 | MS.gene067809:CDS |
| TATTGCAGGGGACAAGCATC+AGG | 0.437663 | 7.1:+19455968 | MS.gene067809:intron |
| TGGACGTGGTGGTGGTTTCA+GGG | 0.439381 | 7.1:+19456102 | MS.gene067809:CDS |
| CCTAGGGGTGGACGTGGTGG+TGG | 0.441999 | 7.1:+19456094 | MS.gene067809:CDS |
| GGTGGTGGTTTCAGGGGAAG+GGG | 0.442686 | 7.1:+19456109 | MS.gene067809:CDS |
| GTGGTGGTGGTTTCAGGGGA+AGG | 0.444907 | 7.1:+19456107 | MS.gene067809:CDS |
| GGTCGATTCGGCGGTGGACG+TGG | 0.450036 | 7.1:+19454500 | MS.gene067809:CDS |
| TTTGGTAGAGGTGGTGGCCG+TGG | 0.453111 | 7.1:+19456022 | MS.gene067809:CDS |
| GGGGTGGAAGAGGTCCTCCT+AGG | 0.457993 | 7.1:+19456077 | MS.gene067809:CDS |
| CACGGCCGCCACCTCTTGCA+GGG | 0.459887 | 7.1:-19454400 | None:intergenic |
| GGACGTGGTGGTGGTCGATT+CGG | 0.462851 | 7.1:+19454488 | MS.gene067809:CDS |
| GGCGGTGGACGTGGTGGTGG+AGG | 0.463762 | 7.1:+19454509 | MS.gene067809:CDS |
| GGTGGTGGCCGTGGAGGCAG+TGG | 0.474714 | 7.1:+19456031 | MS.gene067809:CDS |
| TGCAAAACATGACTCAGATT+GGG | 0.474986 | 7.1:+19454775 | MS.gene067809:CDS |
| GGTGGACGTGGTGGTGGAGG+TGG | 0.479988 | 7.1:+19454512 | MS.gene067809:CDS |
| GGACCTCCCTCCGAAGTTGT+AGG | 0.483894 | 7.1:+19454548 | MS.gene067809:CDS |
| GGGTGGAAGAGGTCCTCCTA+GGG | 0.493747 | 7.1:+19456078 | MS.gene067809:CDS |
| GGACGTGGTGGTGGTTTCAG+GGG | 0.499741 | 7.1:+19456103 | MS.gene067809:CDS |
| GGCCGTGGTGGTGGATTCAG+AGG | 0.507562 | 7.1:+19454416 | MS.gene067809:CDS |
| GAAACTCACAGATTCATTGA+TGG | 0.508035 | 7.1:-19454820 | None:intergenic |
| GGTCCTCCTAGGGGTGGACG+TGG | 0.512243 | 7.1:+19456088 | MS.gene067809:CDS |
| GGACAAGCATCAGGTGGTAG+AGG | 0.524486 | 7.1:+19455977 | MS.gene067809:CDS |
| TTTCTATTAAAATGATGGAA+GGG | 0.525814 | 7.1:+19454927 | MS.gene067809:CDS |
| TACCCACGAACCTACAACTT+CGG | 0.527744 | 7.1:-19454558 | None:intergenic |
| GCATCAGGTGGTAGAGGTGG+AGG | 0.530555 | 7.1:+19455983 | MS.gene067809:CDS |
| CCTCCTAGGGGTGGACGTGG+TGG | 0.531426 | 7.1:+19456091 | MS.gene067809:CDS |
| ACGTTTATCCATGCTTGTGA+AGG | 0.531931 | 7.1:+19454693 | MS.gene067809:CDS |
| GCAAGAGGTGGCGGCCGTGG+TGG | 0.532210 | 7.1:+19454404 | MS.gene067809:CDS |
| TGGTGGTGGTTTCAGGGGAA+GGG | 0.532527 | 7.1:+19456108 | MS.gene067809:CDS |
| CAAGCATCAGGTGGTAGAGG+TGG | 0.537811 | 7.1:+19455980 | MS.gene067809:CDS |
| CACGAAAACCACTGCCTCCA+CGG | 0.540739 | 7.1:-19456039 | None:intergenic |
| GGATTCAGAGGTGGCCGAGA+TGG | 0.541387 | 7.1:+19454428 | MS.gene067809:CDS |
| AGGACCTCTTCCACCCCTTG+GGG | 0.544079 | 7.1:-19456071 | None:intergenic |
| TTCAGAGGTGGCCGAGATGG+TGG | 0.544595 | 7.1:+19454431 | MS.gene067809:CDS |
| GGATTCAGAGGTGGTCGTGA+TGG | 0.545084 | 7.1:+19454452 | MS.gene067809:CDS |
| GGTGGTGGTCGATTCGGCGG+TGG | 0.547225 | 7.1:+19454494 | MS.gene067809:CDS |
| CAGCATCTCCTTCACAAGCA+TGG | 0.551580 | 7.1:-19454701 | None:intergenic |
| GGTGGAAGAGGTCCTCCTAG+GGG | 0.551953 | 7.1:+19456079 | MS.gene067809:CDS |
| AGGGGAAGGGGAAGATTCTA+GGG | 0.556759 | 7.1:+19456121 | MS.gene067809:CDS |
| GGACCTCTTCCACCCCTTGG+GGG | 0.557362 | 7.1:-19456070 | None:intergenic |
| GGTAGAGGTGGAGGCCGTGG+AGG | 0.559603 | 7.1:+19455992 | MS.gene067809:CDS |
| AGAGGTGGTCGTGATGGAGG+AGG | 0.560037 | 7.1:+19454458 | MS.gene067809:CDS |
| TTCAGAGGTGGTCGTGATGG+AGG | 0.569077 | 7.1:+19454455 | MS.gene067809:CDS |
| ACGGCCGCCACCTCTTGCAG+GGG | 0.569761 | 7.1:-19454399 | None:intergenic |
| CCACCACCACGTCCACCCCT+AGG | 0.571422 | 7.1:-19456094 | None:intergenic |
| CACGAACCTACAACTTCGGA+GGG | 0.573435 | 7.1:-19454554 | None:intergenic |
| CGTGGTGGTGGTCGATTCGG+CGG | 0.575172 | 7.1:+19454491 | MS.gene067809:CDS |
| AAACTCACAGATTCATTGAT+GGG | 0.576692 | 7.1:-19454819 | None:intergenic |
| GGCCGAGATGGTGGATTCAG+AGG | 0.581009 | 7.1:+19454440 | MS.gene067809:CDS |
| GGAGGTGGATTTCGTGATGA+AGG | 0.587672 | 7.1:+19454527 | MS.gene067809:CDS |
| GTGAGAACATACTTCGGCTG+AGG | 0.591544 | 7.1:-19455028 | None:intergenic |
| GGTAGAGGTGGTGGCCGTGG+AGG | 0.602807 | 7.1:+19456025 | MS.gene067809:CDS |
| CGATTCGGCGGTGGACGTGG+TGG | 0.605050 | 7.1:+19454503 | MS.gene067809:CDS |
| CCACGAACCTACAACTTCGG+AGG | 0.605907 | 7.1:-19454555 | None:intergenic |
| GGAAGAGGTCCTCCTAGGGG+TGG | 0.608731 | 7.1:+19456082 | MS.gene067809:CDS |
| CCACCACGTCCACCCCTAGG+AGG | 0.613819 | 7.1:-19456091 | None:intergenic |
| TACCAAAACTACCGCCTCCA+CGG | 0.619239 | 7.1:-19456006 | None:intergenic |
| CGAGATGGTGGATTCAGAGG+TGG | 0.625804 | 7.1:+19454443 | MS.gene067809:CDS |
| CACCTCTGAATCCACCATCT+CGG | 0.628054 | 7.1:-19454442 | None:intergenic |
| CTAGAGGCAAGAGCTTCCTA+GGG | 0.630481 | 7.1:-19454994 | None:intergenic |
| TGAGGAAGAAATCTTGCTAG+AGG | 0.638685 | 7.1:-19455010 | None:intergenic |
| CGGCCGCCACCTCTTGCAGG+GGG | 0.639435 | 7.1:-19454398 | None:intergenic |
| CGTGGTGGTGGATTCAGAGG+TGG | 0.644993 | 7.1:+19454419 | MS.gene067809:CDS |
| GAACCTACAACTTCGGAGGG+AGG | 0.658354 | 7.1:-19454551 | None:intergenic |
| TGCAGGGGACAAGCATCAGG+TGG | 0.672433 | 7.1:+19455971 | MS.gene067809:intron |
| CACCTCTGAATCCACCACCA+CGG | 0.697043 | 7.1:-19454418 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTCATTTTTTCAATAAAA+CGG | - | chr7.1:19455430-19455449 | None:intergenic | 10.0% |
| !! | CATAAACAAGTAAATTAATT+AGG | - | chr7.1:19455133-19455152 | None:intergenic | 15.0% |
| !! | ATACTTGTTTGTTTGTTTAA+AGG | + | chr7.1:19455484-19455503 | MS.gene067809:intron | 20.0% |
| !! | TACATCAGATAAAAATAAGA+GGG | + | chr7.1:19455710-19455729 | MS.gene067809:intron | 20.0% |
| !! | TCTTTGATATTAGCTATATA+CGG | + | chr7.1:19455646-19455665 | MS.gene067809:intron | 20.0% |
| !! | TTACATCAGATAAAAATAAG+AGG | + | chr7.1:19455709-19455728 | MS.gene067809:intron | 20.0% |
| !!! | AAAAAATGGAATTTTCTCAT+TGG | - | chr7.1:19454739-19454758 | None:intergenic | 20.0% |
| !!! | CTAATATCAAAGACTAATTT+TGG | - | chr7.1:19455639-19455658 | None:intergenic | 20.0% |
| !!! | CTTATATGTTTTGTTGAAAT+GGG | + | chr7.1:19454866-19454885 | MS.gene067809:intron | 20.0% |
| !!! | GTACTTTTCTATTAAAATGA+TGG | + | chr7.1:19454922-19454941 | MS.gene067809:intron | 20.0% |
| !!! | TAAATAGGAGCATTAAAAAA+TGG | - | chr7.1:19454753-19454772 | None:intergenic | 20.0% |
| !!! | TCTTATATGTTTTGTTGAAA+TGG | + | chr7.1:19454865-19454884 | MS.gene067809:intron | 20.0% |
| !!! | TTTCTATTAAAATGATGGAA+GGG | + | chr7.1:19454927-19454946 | MS.gene067809:CDS | 20.0% |
| !!! | TTTTCTATTAAAATGATGGA+AGG | + | chr7.1:19454926-19454945 | MS.gene067809:CDS | 20.0% |
| ! | AATAAATTGTTGTATGCAGT+TGG | + | chr7.1:19455869-19455888 | MS.gene067809:intron | 25.0% |
| ! | AATTGACTGATTATTATTGC+AGG | + | chr7.1:19455954-19455973 | MS.gene067809:intron | 25.0% |
| ! | ATCTGATGTAACATCAATTA+GGG | - | chr7.1:19455700-19455719 | None:intergenic | 25.0% |
| ! | ATTGACTGATTATTATTGCA+GGG | + | chr7.1:19455955-19455974 | MS.gene067809:intron | 25.0% |
| ! | TATCTGATGTAACATCAATT+AGG | - | chr7.1:19455701-19455720 | None:intergenic | 25.0% |
| !! | ACTTAGACAGGTTAATTTTA+AGG | - | chr7.1:19455056-19455075 | None:intergenic | 25.0% |
| !! | ATTGTACAGTTGATGTTAAA+TGG | + | chr7.1:19455076-19455095 | MS.gene067809:intron | 25.0% |
| !! | CATATGAAATAAAGCATTAG+AGG | - | chr7.1:19455341-19455360 | None:intergenic | 25.0% |
| !! | TTGTACAGTTGATGTTAAAT+GGG | + | chr7.1:19455077-19455096 | MS.gene067809:intron | 25.0% |
| !!! | TTTTTTGTTGGCTTTTGAAA+CGG | + | chr7.1:19455906-19455925 | MS.gene067809:intron | 25.0% |
| AAACTCACAGATTCATTGAT+GGG | - | chr7.1:19454822-19454841 | None:intergenic | 30.0% | |
| CAATTAACACAAGGAAATGT+GGG | - | chr7.1:19455824-19455843 | None:intergenic | 30.0% | |
| CAGATTACATCAAGACAAAA+AGG | - | chr7.1:19455456-19455475 | None:intergenic | 30.0% | |
| TTGACTGATTATTATTGCAG+GGG | + | chr7.1:19455956-19455975 | MS.gene067809:intron | 30.0% | |
| ! | CTATTTCTTGATTGCTATGT+TGG | + | chr7.1:19455195-19455214 | MS.gene067809:intron | 30.0% |
| ! | GTCATGTTTTGCAGATAAAT+AGG | - | chr7.1:19454768-19454787 | None:intergenic | 30.0% |
| !! | GGGAAAGTTGATGAAATATT+TGG | + | chr7.1:19454795-19454814 | MS.gene067809:CDS | 30.0% |
| !! | GTTTAATTTGATGTTTGCAG+AGG | + | chr7.1:19454665-19454684 | MS.gene067809:intron | 30.0% |
| !!! | CTTTGCTTGGAATTTTTTGT+TGG | + | chr7.1:19455894-19455913 | MS.gene067809:intron | 30.0% |
| ATCTGTGAGTTTCTCTTTGT+TGG | + | chr7.1:19454830-19454849 | MS.gene067809:intron | 35.0% | |
| CAACTGTACAATACTTAGAC+AGG | - | chr7.1:19455068-19455087 | None:intergenic | 35.0% | |
| CATTTCCTTGTGTTAATTGC+TGG | + | chr7.1:19455825-19455844 | MS.gene067809:intron | 35.0% | |
| CTAATGCATGTTGAACAACA+AGG | - | chr7.1:19455536-19455555 | None:intergenic | 35.0% | |
| GAAACTCACAGATTCATTGA+TGG | - | chr7.1:19454823-19454842 | None:intergenic | 35.0% | |
| GCAATTAACACAAGGAAATG+TGG | - | chr7.1:19455825-19455844 | None:intergenic | 35.0% | |
| TGCAAAACATGACTCAGATT+GGG | + | chr7.1:19454775-19454794 | MS.gene067809:CDS | 35.0% | |
| ! | ACAAGTTTTACATTGACCCT+AGG | + | chr7.1:19454978-19454997 | MS.gene067809:CDS | 35.0% |
| !! | GTCTAATTTTGAGTGTGAGA+GGG | + | chr7.1:19455570-19455589 | MS.gene067809:intron | 35.0% |
| !! | TGTCTAATTTTGAGTGTGAG+AGG | + | chr7.1:19455569-19455588 | MS.gene067809:intron | 35.0% |
| AAGGCAGTGAGAACATACTT+CGG | - | chr7.1:19455037-19455056 | None:intergenic | 40.0% | |
| ACATCAATTAGGGACAGTAC+AGG | - | chr7.1:19455690-19455709 | None:intergenic | 40.0% | |
| ACGTTTATCCATGCTTGTGA+AGG | + | chr7.1:19454693-19454712 | MS.gene067809:CDS | 40.0% | |
| CAGTTCACACATTCTTCACA+TGG | - | chr7.1:19455285-19455304 | None:intergenic | 40.0% | |
| CTACATGCTAGAATGTAACC+TGG | + | chr7.1:19455793-19455812 | MS.gene067809:intron | 40.0% | |
| CTGCAAAACATGACTCAGAT+TGG | + | chr7.1:19454774-19454793 | MS.gene067809:CDS | 40.0% | |
| GGTTACATTCTAGCATGTAG+AGG | - | chr7.1:19455793-19455812 | None:intergenic | 40.0% | |
| TATGCAGTTGGATCTTTGCT+TGG | + | chr7.1:19455881-19455900 | MS.gene067809:intron | 40.0% | |
| TGAGGAAGAAATCTTGCTAG+AGG | - | chr7.1:19455013-19455032 | None:intergenic | 40.0% | |
| TGCATCCAGCAATTAACACA+AGG | - | chr7.1:19455833-19455852 | None:intergenic | 40.0% | |
| ! | GTTGCTACTTCATATGCATC+TGG | + | chr7.1:19454953-19454972 | MS.gene067809:CDS | 40.0% |
| TACCCACGAACCTACAACTT+CGG | - | chr7.1:19454561-19454580 | None:intergenic | 45.0% | |
| !! | TTGAGTGTGAGAGGGTGTTA+AGG | + | chr7.1:19455578-19455597 | MS.gene067809:intron | 45.0% |
| AAGGAAATGTGGGACAGTCC+AGG | - | chr7.1:19455814-19455833 | None:intergenic | 50.0% | |
| CACCTCTGAATCCACCATCT+CGG | - | chr7.1:19454445-19454464 | None:intergenic | 50.0% | |
| CACGAACCTACAACTTCGGA+GGG | - | chr7.1:19454557-19454576 | None:intergenic | 50.0% | |
| CAGCATCTCCTTCACAAGCA+TGG | - | chr7.1:19454704-19454723 | None:intergenic | 50.0% | |
| CTAGAGGCAAGAGCTTCCTA+GGG | - | chr7.1:19454997-19455016 | None:intergenic | 50.0% | |
| CTCCGAAGTTGTAGGTTCGT+GGG | + | chr7.1:19454556-19454575 | MS.gene067809:intron | 50.0% | |
| GTGAGAACATACTTCGGCTG+AGG | - | chr7.1:19455031-19455050 | None:intergenic | 50.0% | |
| TACCAAAACTACCGCCTCCA+CGG | - | chr7.1:19456009-19456028 | None:intergenic | 50.0% | |
| TATTGCAGGGGACAAGCATC+AGG | + | chr7.1:19455968-19455987 | MS.gene067809:intron | 50.0% | |
| ! | AGGCAGTGGTTTTCGTGGAA+GGG | + | chr7.1:19456045-19456064 | MS.gene067809:CDS | 50.0% |
| ! | GGAGGTGGATTTCGTGATGA+AGG | + | chr7.1:19454527-19454546 | MS.gene067809:CDS | 50.0% |
| !! | AGAGGGTGTTAAGGTGTGGT+GGG | + | chr7.1:19455587-19455606 | MS.gene067809:intron | 50.0% |
| !! | TGTGAGAGGGTGTTAAGGTG+TGG | + | chr7.1:19455583-19455602 | MS.gene067809:intron | 50.0% |
| !!! | GGTAGTTTTGGTAGAGGTGG+TGG | + | chr7.1:19456016-19456035 | MS.gene067809:CDS | 50.0% |
| CAAGCATCAGGTGGTAGAGG+TGG | + | chr7.1:19455980-19455999 | MS.gene067809:CDS | 55.0% | |
| CACCTCTGAATCCACCACCA+CGG | - | chr7.1:19454421-19454440 | None:intergenic | 55.0% | |
| CACGAAAACCACTGCCTCCA+CGG | - | chr7.1:19456042-19456061 | None:intergenic | 55.0% | |
| CCACGAACCTACAACTTCGG+AGG | - | chr7.1:19454558-19454577 | None:intergenic | 55.0% | |
| CCTCCGAAGTTGTAGGTTCG+TGG | + | chr7.1:19454555-19454574 | MS.gene067809:intron | 55.0% | |
| GAACCTACAACTTCGGAGGG+AGG | - | chr7.1:19454554-19454573 | None:intergenic | 55.0% | |
| GCTAGAGGCAAGAGCTTCCT+AGG | - | chr7.1:19454998-19455017 | None:intergenic | 55.0% | |
| GGACAAGCATCAGGTGGTAG+AGG | + | chr7.1:19455977-19455996 | MS.gene067809:CDS | 55.0% | |
| GGATTCAGAGGTGGTCGTGA+TGG | + | chr7.1:19454452-19454471 | MS.gene067809:CDS | 55.0% | |
| TTCAGAGGTGGTCGTGATGG+AGG | + | chr7.1:19454455-19454474 | MS.gene067809:CDS | 55.0% | |
| ! | GAGGCAGTGGTTTTCGTGGA+AGG | + | chr7.1:19456044-19456063 | MS.gene067809:CDS | 55.0% |
| ! | GGCAGTGGTTTTCGTGGAAG+GGG | + | chr7.1:19456046-19456065 | MS.gene067809:CDS | 55.0% |
| !! | CGAGATGGTGGATTCAGAGG+TGG | + | chr7.1:19454443-19454462 | MS.gene067809:CDS | 55.0% |
| !! | CGTGATGGAGGAGGTTTTCG+TGG | + | chr7.1:19454467-19454486 | MS.gene067809:CDS | 55.0% |
| !! | GAGAGGGTGTTAAGGTGTGG+TGG | + | chr7.1:19455586-19455605 | MS.gene067809:intron | 55.0% |
| !! | TGGACGTGGTGGTGGTTTCA+GGG | + | chr7.1:19456102-19456121 | MS.gene067809:CDS | 55.0% |
| !! | TGGTGGTGGTTTCAGGGGAA+GGG | + | chr7.1:19456108-19456127 | MS.gene067809:CDS | 55.0% |
| !!! | GGAGGCGGTAGTTTTGGTAG+AGG | + | chr7.1:19456010-19456029 | MS.gene067809:CDS | 55.0% |
| !!! | GGCGGTAGTTTTGGTAGAGG+TGG | + | chr7.1:19456013-19456032 | MS.gene067809:CDS | 55.0% |
| AGGACCTCTTCCACCCCTTG+GGG | - | chr7.1:19456074-19456093 | None:intergenic | 60.0% | |
| ATGAGACCCCCTGCAAGAGG+TGG | + | chr7.1:19454392-19454411 | MS.gene067809:CDS | 60.0% | |
| GAGGACCTCTTCCACCCCTT+GGG | - | chr7.1:19456075-19456094 | None:intergenic | 60.0% | |
| GCATCAGGTGGTAGAGGTGG+AGG | + | chr7.1:19455983-19456002 | MS.gene067809:CDS | 60.0% | |
| GGACCTCCCTCCGAAGTTGT+AGG | + | chr7.1:19454548-19454567 | MS.gene067809:CDS | 60.0% | |
| GGATTCAGAGGTGGCCGAGA+TGG | + | chr7.1:19454428-19454447 | MS.gene067809:CDS | 60.0% | |
| GGGTGGAAGAGGTCCTCCTA+GGG | + | chr7.1:19456078-19456097 | MS.gene067809:CDS | 60.0% | |
| GGTGGAAGAGGTCCTCCTAG+GGG | + | chr7.1:19456079-19456098 | MS.gene067809:CDS | 60.0% | |
| TGCAGGGGACAAGCATCAGG+TGG | + | chr7.1:19455971-19455990 | MS.gene067809:intron | 60.0% | |
| TTCAGAGGTGGCCGAGATGG+TGG | + | chr7.1:19454431-19454450 | MS.gene067809:CDS | 60.0% | |
| ! | AGAGGTGGTCGTGATGGAGG+AGG | + | chr7.1:19454458-19454477 | MS.gene067809:CDS | 60.0% |
| ! | CGTGGAGGCAGTGGTTTTCG+TGG | + | chr7.1:19456040-19456059 | MS.gene067809:CDS | 60.0% |
| ! | GGAGGAGGTTTTCGTGGACG+TGG | + | chr7.1:19454473-19454492 | MS.gene067809:CDS | 60.0% |
| ! | GGAGGTTTTCGTGGACGTGG+TGG | + | chr7.1:19454476-19454495 | MS.gene067809:CDS | 60.0% |
| ! | GGTGGTGGTTTCAGGGGAAG+GGG | + | chr7.1:19456109-19456128 | MS.gene067809:CDS | 60.0% |
| ! | GGTTTTCGTGGACGTGGTGG+TGG | + | chr7.1:19454479-19454498 | MS.gene067809:CDS | 60.0% |
| ! | TTTGGTAGAGGTGGTGGCCG+TGG | + | chr7.1:19456022-19456041 | MS.gene067809:CDS | 60.0% |
| !! | CGTGGTGGTGGATTCAGAGG+TGG | + | chr7.1:19454419-19454438 | MS.gene067809:CDS | 60.0% |
| !! | GGACGTGGTGGTGGTCGATT+CGG | + | chr7.1:19454488-19454507 | MS.gene067809:CDS | 60.0% |
| !! | GGACGTGGTGGTGGTTTCAG+GGG | + | chr7.1:19456103-19456122 | MS.gene067809:CDS | 60.0% |
| !! | GGCCGAGATGGTGGATTCAG+AGG | + | chr7.1:19454440-19454459 | MS.gene067809:CDS | 60.0% |
| !! | GTGGACGTGGTGGTGGTTTC+AGG | + | chr7.1:19456101-19456120 | MS.gene067809:CDS | 60.0% |
| !! | GTGGTGGTGGTTTCAGGGGA+AGG | + | chr7.1:19456107-19456126 | MS.gene067809:CDS | 60.0% |
| AGACCCCCTGCAAGAGGTGG+CGG | + | chr7.1:19454395-19454414 | MS.gene067809:CDS | 65.0% | |
| GGAAGAGGTCCTCCTAGGGG+TGG | + | chr7.1:19456082-19456101 | MS.gene067809:CDS | 65.0% | |
| GGACCTCTTCCACCCCTTGG+GGG | - | chr7.1:19456073-19456092 | None:intergenic | 65.0% | |
| GGAGGACCTCTTCCACCCCT+TGG | - | chr7.1:19456076-19456095 | None:intergenic | 65.0% | |
| GGGGTGGAAGAGGTCCTCCT+AGG | + | chr7.1:19456077-19456096 | MS.gene067809:CDS | 65.0% | |
| TCGTGGAAGGGGTCCCCCAA+GGG | + | chr7.1:19456057-19456076 | MS.gene067809:CDS | 65.0% | |
| TTCGTGGAAGGGGTCCCCCA+AGG | + | chr7.1:19456056-19456075 | MS.gene067809:CDS | 65.0% | |
| ! | GGCCGTGGAGGCGGTAGTTT+TGG | + | chr7.1:19456004-19456023 | MS.gene067809:CDS | 65.0% |
| !! | CGTGGTGGTGGTCGATTCGG+CGG | + | chr7.1:19454491-19454510 | MS.gene067809:CDS | 65.0% |
| !! | GGCCGTGGTGGTGGATTCAG+AGG | + | chr7.1:19454416-19454435 | MS.gene067809:CDS | 65.0% |
| ACGGCCGCCACCTCTTGCAG+GGG | - | chr7.1:19454402-19454421 | None:intergenic | 70.0% | |
| AGAGGTGGAGGCCGTGGAGG+CGG | + | chr7.1:19455995-19456014 | MS.gene067809:CDS | 70.0% | |
| CACGGCCGCCACCTCTTGCA+GGG | - | chr7.1:19454403-19454422 | None:intergenic | 70.0% | |
| CCACCACCACGTCCACCCCT+AGG | - | chr7.1:19456097-19456116 | None:intergenic | 70.0% | |
| CCACCACGTCCACCCCTAGG+AGG | - | chr7.1:19456094-19456113 | None:intergenic | 70.0% | |
| CCTAGGGGTGGACGTGGTGG+TGG | + | chr7.1:19456094-19456113 | MS.gene067809:CDS | 70.0% | |
| CCTCCTAGGGGTGGACGTGG+TGG | + | chr7.1:19456091-19456110 | MS.gene067809:CDS | 70.0% | |
| CGTGGAAGGGGTCCCCCAAG+GGG | + | chr7.1:19456058-19456077 | MS.gene067809:CDS | 70.0% | |
| GGTAGAGGTGGAGGCCGTGG+AGG | + | chr7.1:19455992-19456011 | MS.gene067809:CDS | 70.0% | |
| GGTCCCCCAAGGGGTGGAAG+AGG | + | chr7.1:19456067-19456086 | MS.gene067809:CDS | 70.0% | |
| GGTCCTCCTAGGGGTGGACG+TGG | + | chr7.1:19456088-19456107 | MS.gene067809:CDS | 70.0% | |
| GGTGGTAGAGGTGGAGGCCG+TGG | + | chr7.1:19455989-19456008 | MS.gene067809:CDS | 70.0% | |
| TTCGGCGGTGGACGTGGTGG+TGG | + | chr7.1:19454506-19454525 | MS.gene067809:CDS | 70.0% | |
| ! | CGATTCGGCGGTGGACGTGG+TGG | + | chr7.1:19454503-19454522 | MS.gene067809:CDS | 70.0% |
| ! | GGTAGAGGTGGTGGCCGTGG+AGG | + | chr7.1:19456025-19456044 | MS.gene067809:CDS | 70.0% |
| !! | GGTCGATTCGGCGGTGGACG+TGG | + | chr7.1:19454500-19454519 | MS.gene067809:CDS | 70.0% |
| !! | GGTGGACGTGGTGGTGGAGG+TGG | + | chr7.1:19454512-19454531 | MS.gene067809:CDS | 70.0% |
| !! | GGTGGTGGTCGATTCGGCGG+TGG | + | chr7.1:19454494-19454513 | MS.gene067809:CDS | 70.0% |
| CCACGGCCGCCACCTCTTGC+AGG | - | chr7.1:19454404-19454423 | None:intergenic | 75.0% | |
| CGGCCGCCACCTCTTGCAGG+GGG | - | chr7.1:19454401-19454420 | None:intergenic | 75.0% | |
| GGAAGGGGTCCCCCAAGGGG+TGG | + | chr7.1:19456061-19456080 | MS.gene067809:CDS | 75.0% | |
| ! | AGAGGTGGCGGCCGTGGTGG+TGG | + | chr7.1:19454407-19454426 | MS.gene067809:CDS | 75.0% |
| ! | CCTGCAAGAGGTGGCGGCCG+TGG | + | chr7.1:19454401-19454420 | MS.gene067809:CDS | 75.0% |
| ! | GCAAGAGGTGGCGGCCGTGG+TGG | + | chr7.1:19454404-19454423 | MS.gene067809:CDS | 75.0% |
| ! | GGTGGTGGCCGTGGAGGCAG+TGG | + | chr7.1:19456031-19456050 | MS.gene067809:CDS | 75.0% |
| !! | GGCGGTGGACGTGGTGGTGG+AGG | + | chr7.1:19454509-19454528 | MS.gene067809:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 19454392 | 19456141 | 19454392 | ID=MS.gene067809 |
| chr7.1 | mRNA | 19454392 | 19456141 | 19454392 | ID=MS.gene067809.t1;Parent=MS.gene067809 |
| chr7.1 | exon | 19454392 | 19454569 | 19454392 | ID=MS.gene067809.t1.exon1;Parent=MS.gene067809.t1 |
| chr7.1 | CDS | 19454392 | 19454569 | 19454392 | ID=cds.MS.gene067809.t1;Parent=MS.gene067809.t1 |
| chr7.1 | exon | 19454685 | 19454833 | 19454685 | ID=MS.gene067809.t1.exon2;Parent=MS.gene067809.t1 |
| chr7.1 | CDS | 19454685 | 19454833 | 19454685 | ID=cds.MS.gene067809.t1;Parent=MS.gene067809.t1 |
| chr7.1 | exon | 19454923 | 19455038 | 19454923 | ID=MS.gene067809.t1.exon3;Parent=MS.gene067809.t1 |
| chr7.1 | CDS | 19454923 | 19455038 | 19454923 | ID=cds.MS.gene067809.t1;Parent=MS.gene067809.t1 |
| chr7.1 | exon | 19455976 | 19456141 | 19455976 | ID=MS.gene067809.t1.exon4;Parent=MS.gene067809.t1 |
| chr7.1 | CDS | 19455976 | 19456141 | 19455976 | ID=cds.MS.gene067809.t1;Parent=MS.gene067809.t1 |
| Gene Sequence |
| Protein sequence |
