Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene50069.t1 | RHN61267.1 | 86.4 | 447 | 47 | 2 | 1 | 447 | 1 | 433 | 3.30E-156 | 561.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene50069.t1 | O65009 | 39.1 | 248 | 139 | 4 | 209 | 445 | 34 | 280 | 9.9e-45 | 182.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene50069.t1 | A0A396IEL3 | 86.4 | 447 | 47 | 2 | 1 | 447 | 1 | 433 | 2.3e-156 | 561.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049993 | MS.gene50069 | -0.824336 | 8.53E-54 | -1.69E-46 |
MS.gene050426 | MS.gene50069 | 0.817391 | 3.38E-52 | -1.69E-46 |
MS.gene050464 | MS.gene50069 | -0.812844 | 3.46E-51 | -1.69E-46 |
MS.gene050529 | MS.gene50069 | -0.802905 | 4.49E-49 | -1.69E-46 |
MS.gene051996 | MS.gene50069 | 0.822151 | 2.76E-53 | -1.69E-46 |
MS.gene052011 | MS.gene50069 | 0.828617 | 8.14E-55 | -1.69E-46 |
MS.gene052223 | MS.gene50069 | 0.864434 | 1.22E-64 | -1.69E-46 |
MS.gene054183 | MS.gene50069 | -0.808262 | 3.38E-50 | -1.69E-46 |
MS.gene054277 | MS.gene50069 | 0.82435 | 8.46E-54 | -1.69E-46 |
MS.gene054742 | MS.gene50069 | 0.830802 | 2.39E-55 | -1.69E-46 |
MS.gene055595 | MS.gene50069 | 0.806242 | 9.05E-50 | -1.69E-46 |
MS.gene055601 | MS.gene50069 | 0.840421 | 8.79E-58 | -1.69E-46 |
MS.gene056330 | MS.gene50069 | 0.865287 | 6.59E-65 | -1.69E-46 |
MS.gene056690 | MS.gene50069 | 0.830507 | 2.82E-55 | -1.69E-46 |
MS.gene056691 | MS.gene50069 | 0.961881 | 3.22E-120 | -1.69E-46 |
MS.gene056899 | MS.gene50069 | 0.854761 | 9.92E-62 | -1.69E-46 |
MS.gene056920 | MS.gene50069 | 0.831553 | 1.56E-55 | -1.69E-46 |
MS.gene056923 | MS.gene50069 | 0.832489 | 9.18E-56 | -1.69E-46 |
MS.gene056924 | MS.gene50069 | 0.842224 | 2.95E-58 | -1.69E-46 |
MS.gene058218 | MS.gene50069 | 0.814512 | 1.48E-51 | -1.69E-46 |
MS.gene059043 | MS.gene50069 | 0.814112 | 1.82E-51 | -1.69E-46 |
MS.gene060087 | MS.gene50069 | 0.829555 | 4.82E-55 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene50069.t1 | MTR_4g069570 | 91.098 | 337 | 24 | 2 | 111 | 447 | 6 | 336 | 0.0 | 631 |
MS.gene50069.t1 | MTR_4g069550 | 62.578 | 481 | 128 | 10 | 1 | 447 | 1 | 463 | 0.0 | 579 |
MS.gene50069.t1 | MTR_4g069520 | 62.174 | 460 | 112 | 6 | 41 | 447 | 273 | 723 | 0.0 | 566 |
MS.gene50069.t1 | MTR_4g069520 | 42.345 | 307 | 58 | 8 | 1 | 197 | 1 | 298 | 1.58e-53 | 191 |
MS.gene50069.t1 | MTR_4g069520 | 45.415 | 229 | 54 | 5 | 41 | 198 | 179 | 407 | 5.54e-45 | 167 |
MS.gene50069.t1 | MTR_4g069520 | 62.174 | 460 | 112 | 6 | 41 | 447 | 259 | 709 | 0.0 | 565 |
MS.gene50069.t1 | MTR_4g069520 | 44.369 | 293 | 58 | 7 | 1 | 197 | 1 | 284 | 4.21e-57 | 200 |
MS.gene50069.t1 | MTR_4g069520 | 45.415 | 229 | 54 | 5 | 41 | 198 | 165 | 393 | 6.08e-45 | 167 |
MS.gene50069.t1 | MTR_4g069040 | 57.567 | 337 | 120 | 5 | 118 | 446 | 188 | 509 | 4.08e-133 | 394 |
MS.gene50069.t1 | MTR_3g116320 | 41.839 | 435 | 216 | 11 | 36 | 447 | 268 | 688 | 2.80e-101 | 317 |
MS.gene50069.t1 | MTR_3g116270 | 38.431 | 510 | 247 | 19 | 1 | 447 | 1 | 506 | 2.01e-99 | 307 |
MS.gene50069.t1 | MTR_6g086530 | 71.220 | 205 | 58 | 1 | 243 | 446 | 1 | 205 | 2.69e-98 | 293 |
MS.gene50069.t1 | MTR_3g116410 | 47.032 | 219 | 111 | 4 | 231 | 446 | 59 | 275 | 1.35e-68 | 220 |
MS.gene50069.t1 | MTR_3g107830 | 46.575 | 219 | 112 | 4 | 231 | 446 | 39 | 255 | 3.21e-68 | 218 |
MS.gene50069.t1 | MTR_4g069680 | 45.662 | 219 | 114 | 4 | 231 | 446 | 70 | 286 | 4.16e-66 | 214 |
MS.gene50069.t1 | MTR_3g116380 | 45.455 | 220 | 114 | 4 | 231 | 447 | 87 | 303 | 1.49e-65 | 213 |
MS.gene50069.t1 | MTR_4g068420 | 62.590 | 139 | 33 | 1 | 309 | 447 | 2 | 121 | 6.18e-60 | 192 |
MS.gene50069.t1 | MTR_4g069540 | 90.588 | 85 | 8 | 0 | 210 | 294 | 13 | 97 | 5.33e-47 | 157 |
MS.gene50069.t1 | MTR_1g008500 | 38.356 | 219 | 125 | 6 | 231 | 445 | 171 | 383 | 3.97e-44 | 159 |
MS.gene50069.t1 | MTR_1g008510 | 37.156 | 218 | 130 | 5 | 229 | 445 | 113 | 324 | 1.25e-41 | 150 |
MS.gene50069.t1 | MTR_0312s0030 | 37.615 | 218 | 126 | 7 | 231 | 445 | 113 | 323 | 2.48e-41 | 150 |
MS.gene50069.t1 | MTR_1g007520 | 37.615 | 218 | 126 | 7 | 231 | 445 | 113 | 323 | 2.48e-41 | 150 |
MS.gene50069.t1 | MTR_3g109490 | 40.000 | 220 | 123 | 7 | 231 | 446 | 107 | 321 | 2.61e-41 | 149 |
MS.gene50069.t1 | MTR_1g008590 | 37.615 | 218 | 126 | 7 | 231 | 445 | 113 | 323 | 1.02e-40 | 148 |
MS.gene50069.t1 | MTR_1g008530 | 36.364 | 220 | 125 | 7 | 233 | 445 | 11 | 222 | 2.11e-40 | 144 |
MS.gene50069.t1 | MTR_1g008470 | 35.185 | 216 | 131 | 5 | 231 | 444 | 89 | 297 | 4.10e-40 | 145 |
MS.gene50069.t1 | MTR_1g008460 | 35.814 | 215 | 130 | 6 | 231 | 445 | 89 | 295 | 1.29e-39 | 144 |
MS.gene50069.t1 | MTR_1g008560 | 36.036 | 222 | 131 | 6 | 229 | 445 | 113 | 328 | 3.21e-39 | 144 |
MS.gene50069.t1 | MTR_1g008450 | 35.545 | 211 | 127 | 6 | 236 | 444 | 107 | 310 | 1.22e-34 | 131 |
MS.gene50069.t1 | MTR_1g008580 | 35.795 | 176 | 106 | 5 | 271 | 445 | 1 | 170 | 5.25e-33 | 123 |
MS.gene50069.t1 | MTR_3g078090 | 33.937 | 221 | 130 | 7 | 231 | 444 | 413 | 624 | 1.94e-30 | 124 |
MS.gene50069.t1 | MTR_5g034320 | 30.769 | 221 | 137 | 6 | 231 | 444 | 415 | 626 | 3.44e-28 | 117 |
MS.gene50069.t1 | MTR_8g064560 | 30.415 | 217 | 143 | 5 | 231 | 444 | 412 | 623 | 1.78e-26 | 112 |
MS.gene50069.t1 | MTR_8g064500 | 30.126 | 239 | 151 | 7 | 209 | 444 | 145 | 370 | 1.45e-25 | 107 |
MS.gene50069.t1 | MTR_8g064530 | 29.032 | 217 | 146 | 5 | 231 | 444 | 429 | 640 | 7.81e-24 | 104 |
MS.gene50069.t1 | MTR_4g133840 | 32.941 | 170 | 108 | 5 | 277 | 444 | 21 | 186 | 1.05e-22 | 95.5 |
MS.gene50069.t1 | MTR_5g033350 | 28.191 | 188 | 122 | 4 | 265 | 444 | 16 | 198 | 1.39e-19 | 87.0 |
MS.gene50069.t1 | MTR_5g033340 | 27.111 | 225 | 146 | 6 | 228 | 444 | 163 | 377 | 6.26e-19 | 88.6 |
MS.gene50069.t1 | MTR_5g033340 | 28.859 | 149 | 102 | 2 | 276 | 424 | 6 | 150 | 5.39e-16 | 79.7 |
MS.gene50069.t1 | MTR_5g033330 | 27.317 | 205 | 132 | 5 | 228 | 424 | 194 | 389 | 3.19e-17 | 84.7 |
MS.gene50069.t1 | MTR_5g033330 | 27.976 | 168 | 109 | 3 | 265 | 424 | 18 | 181 | 4.00e-16 | 81.3 |
MS.gene50069.t1 | MTR_5g033330 | 26.222 | 225 | 148 | 6 | 228 | 444 | 402 | 616 | 4.65e-16 | 80.9 |
MS.gene50069.t1 | MTR_2g081770 | 30.962 | 239 | 133 | 12 | 211 | 446 | 61 | 270 | 3.83e-17 | 81.6 |
MS.gene50069.t1 | MTR_8g046000 | 36.364 | 154 | 84 | 6 | 295 | 447 | 83 | 223 | 4.55e-17 | 80.9 |
MS.gene50069.t1 | MTR_8g445140 | 34.667 | 150 | 86 | 7 | 297 | 446 | 165 | 302 | 2.43e-16 | 79.7 |
MS.gene50069.t1 | MTR_8g045890 | 34.667 | 150 | 86 | 7 | 297 | 446 | 294 | 431 | 4.36e-16 | 80.5 |
MS.gene50069.t1 | MTR_8g045890 | 34.667 | 150 | 86 | 7 | 297 | 446 | 335 | 472 | 4.42e-16 | 80.5 |
MS.gene50069.t1 | MTR_8g045890 | 34.667 | 150 | 86 | 7 | 297 | 446 | 372 | 509 | 5.58e-16 | 80.5 |
MS.gene50069.t1 | MTR_8g445170 | 32.500 | 160 | 96 | 7 | 287 | 446 | 236 | 383 | 9.63e-16 | 79.0 |
MS.gene50069.t1 | MTR_8g045880 | 34.667 | 150 | 86 | 6 | 297 | 446 | 177 | 314 | 1.70e-14 | 74.7 |
MS.gene50069.t1 | MTR_8g045880 | 34.667 | 150 | 86 | 6 | 297 | 446 | 212 | 349 | 2.62e-14 | 74.3 |
MS.gene50069.t1 | MTR_8g045880 | 34.667 | 150 | 86 | 6 | 297 | 446 | 214 | 351 | 2.80e-14 | 74.3 |
MS.gene50069.t1 | MTR_2g081610 | 33.566 | 143 | 83 | 6 | 304 | 446 | 129 | 259 | 1.69e-13 | 70.9 |
MS.gene50069.t1 | MTR_2g081590 | 27.386 | 241 | 140 | 12 | 208 | 446 | 52 | 259 | 1.35e-12 | 68.2 |
MS.gene50069.t1 | MTR_8g075930 | 40.278 | 72 | 41 | 2 | 358 | 428 | 11 | 81 | 8.33e-12 | 61.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene50069.t1 | AT1G49320 | 37.387 | 222 | 131 | 3 | 231 | 445 | 58 | 278 | 1.17e-52 | 178 |
MS.gene50069.t1 | AT5G25610 | 37.104 | 221 | 127 | 7 | 231 | 445 | 176 | 390 | 1.50e-42 | 155 |
MS.gene50069.t1 | AT1G60390 | 27.027 | 407 | 246 | 18 | 62 | 444 | 241 | 620 | 7.65e-26 | 110 |
MS.gene50069.t1 | AT1G70370 | 26.905 | 420 | 261 | 18 | 48 | 444 | 226 | 622 | 1.69e-24 | 107 |
MS.gene50069.t1 | AT1G70370 | 26.905 | 420 | 261 | 18 | 48 | 444 | 226 | 622 | 1.69e-24 | 107 |
MS.gene50069.t1 | AT1G23760 | 29.319 | 191 | 129 | 4 | 255 | 444 | 433 | 618 | 1.15e-22 | 101 |
Find 132 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGTAAGCTCCGTTGGATTTA+TGG | 0.143157 | 4.2:-37149477 | None:intergenic |
TTTGATCTCCGTTGGATTTA+TGG | 0.163493 | 4.2:-37149210 | None:intergenic |
GAATTTGTTGACACAATTAT+TGG | 0.204523 | 4.2:+37149913 | MS.gene50069:CDS |
ATTCAGACAACTTGGGATTA+AGG | 0.231832 | 4.2:+37150218 | MS.gene50069:CDS |
GTATGATCCAAGTTAGAAAT+TGG | 0.234762 | 4.2:-37149610 | None:intergenic |
CTCCGTTGGATTTATGGTTA+TGG | 0.234942 | 4.2:-37149204 | None:intergenic |
TTGTACCCAGTAATGTAATT+TGG | 0.253989 | 4.2:-37149532 | None:intergenic |
CTATACCCGGTAATGTAATT+TGG | 0.262932 | 4.2:-37149178 | None:intergenic |
TCCGTTGGATTTATGGTTAT+GGG | 0.267348 | 4.2:-37149203 | None:intergenic |
TTCATTTGATTCTGGTTGTT+TGG | 0.269582 | 4.2:-37149281 | None:intergenic |
AAACTTCTTGGACCGGAAAT+TGG | 0.272020 | 4.2:-37149696 | None:intergenic |
TGTAATGACCCTCCAATTTC+CGG | 0.278512 | 4.2:+37149684 | MS.gene50069:CDS |
TGATGAGAATGGAGATAAAA+TGG | 0.280906 | 4.2:+37150140 | MS.gene50069:CDS |
CTCCGTTGGATTTATGGTTA+TGG | 0.282351 | 4.2:-37149471 | None:intergenic |
ATGTAAGGTTCATTCGATTC+TGG | 0.299569 | 4.2:-37149124 | None:intergenic |
TAGTAAATGGCATATGGATA+TGG | 0.303048 | 4.2:-37150066 | None:intergenic |
TGTCTGAATATAATATGATT+AGG | 0.304357 | 4.2:-37150204 | None:intergenic |
AGTTCTAGGTGAGGGGTTGC+TGG | 0.311022 | 4.2:-37149965 | None:intergenic |
AAGTGCTCCTCTCATGGATT+TGG | 0.314509 | 4.2:-37149821 | None:intergenic |
CAAAATCAAGTGGATTTAAA+TGG | 0.315181 | 4.2:+37149064 | MS.gene50069:CDS |
TCCGTTGGATTTATGGTTAT+GGG | 0.315611 | 4.2:-37149470 | None:intergenic |
TGTAAGGACCATTGGATTCA+TGG | 0.323411 | 4.2:-37149375 | None:intergenic |
GAACCTTACATGACTGGATA+TGG | 0.324109 | 4.2:+37149301 | MS.gene50069:CDS |
GAACCTTACATAACTGGATA+TGG | 0.326403 | 4.2:+37149136 | MS.gene50069:CDS |
GGTAATGTAATTTGATTGTT+TGG | 0.326516 | 4.2:-37149335 | None:intergenic |
CAATATCGTATAACTCAATA+TGG | 0.334238 | 4.2:+37149403 | MS.gene50069:CDS |
TTCATTCGATTCTGGTTGTT+TGG | 0.335521 | 4.2:-37149116 | None:intergenic |
CTTGAACACTTTAGTCTTTG+TGG | 0.337552 | 4.2:-37150103 | None:intergenic |
GACCATTGGATTCATGGTTA+TGG | 0.338346 | 4.2:-37149369 | None:intergenic |
TCCATTCAGATGTATCAAAA+TGG | 0.341451 | 4.2:-37150179 | None:intergenic |
TGCGAAGGGGAAACCGTTAC+AGG | 0.345500 | 4.2:+37149850 | MS.gene50069:CDS |
AGAGGTAAGGAGAAACTTCT+TGG | 0.347982 | 4.2:-37149708 | None:intergenic |
ACCATTGGATTCATGGTTAT+GGG | 0.349773 | 4.2:-37149368 | None:intergenic |
AAGCAACCAAATTACATTAC+TGG | 0.350332 | 4.2:+37149526 | MS.gene50069:CDS |
GGTAATGTAATTTGGTTGTT+TGG | 0.352526 | 4.2:-37149170 | None:intergenic |
TTGGCTTGAGGAGATCCTTC+AGG | 0.355790 | 4.2:-37149802 | None:intergenic |
TCGAATGAACCTTACATAAC+TGG | 0.367241 | 4.2:+37149130 | MS.gene50069:CDS |
ATGTAAGGTTCATTTGATTC+TGG | 0.372042 | 4.2:-37149289 | None:intergenic |
TCTTCTACGGAGTTGGTAGA+TGG | 0.379268 | 4.2:-37149583 | None:intergenic |
GTCTGAATATAATATGATTA+GGG | 0.381294 | 4.2:-37150203 | None:intergenic |
AAACAATCAAATTACATTAC+CGG | 0.386224 | 4.2:+37149337 | MS.gene50069:CDS |
AAGCAATCAAATTACATTAC+CGG | 0.386224 | 4.2:+37149439 | MS.gene50069:CDS |
AATGTAATGGCAATAGTAAA+TGG | 0.389637 | 4.2:-37150079 | None:intergenic |
AAACAACCAAATTACATTAC+CGG | 0.395982 | 4.2:+37149172 | MS.gene50069:CDS |
CACAAAGACTAAAGTGTTCA+AGG | 0.405308 | 4.2:+37150104 | MS.gene50069:CDS |
GAAAAGAGTTGAAGAATACT+TGG | 0.405738 | 4.2:-37149775 | None:intergenic |
GGATGACAAGCTACCCATTT+GGG | 0.407784 | 4.2:-37150039 | None:intergenic |
CATATTATATTCAGACAACT+TGG | 0.410545 | 4.2:+37150210 | MS.gene50069:CDS |
AGATCTCCCAATTTCTAACT+TGG | 0.414347 | 4.2:+37149603 | MS.gene50069:CDS |
GGTAATGTAATTTGATTGCT+TGG | 0.415162 | 4.2:-37149437 | None:intergenic |
CAAGACAGGATATTTCAGTT+TGG | 0.426765 | 4.2:+37149642 | MS.gene50069:CDS |
CTCTTCAAGTGCTCCTCTCA+TGG | 0.434563 | 4.2:-37149827 | None:intergenic |
CAAATTACATTACCGGGTAT+AGG | 0.434802 | 4.2:+37149179 | MS.gene50069:CDS |
CAAATTACATTACCGGGTAT+AGG | 0.434802 | 4.2:+37149446 | MS.gene50069:CDS |
TTGAGTTATGTAAGGACCAT+TGG | 0.436047 | 4.2:-37149383 | None:intergenic |
ATGATATTGATGTTCCCAAA+TGG | 0.438419 | 4.2:+37150025 | MS.gene50069:CDS |
TTACCATATCCAGTTATGTA+AGG | 0.446290 | 4.2:-37149139 | None:intergenic |
CCTCTCATGGATTTGGCTTG+AGG | 0.446591 | 4.2:-37149814 | None:intergenic |
GGGATGACAAGCTACCCATT+TGG | 0.447559 | 4.2:-37150040 | None:intergenic |
TCCCTGTGAACCATCTTATG+TGG | 0.449193 | 4.2:+37150271 | MS.gene50069:CDS |
GAGCATGGACTCTAGAGAAT+TGG | 0.449401 | 4.2:-37149890 | None:intergenic |
TAGTCTTTGTGGCAATGTAA+TGG | 0.454439 | 4.2:-37150092 | None:intergenic |
TGGCAATAGTAAATGGCATA+TGG | 0.457847 | 4.2:-37150072 | None:intergenic |
GGAGATAAAATGGAAGCTCT+TGG | 0.462321 | 4.2:+37150150 | MS.gene50069:CDS |
AGACAACTTGGGATTAAGGC+TGG | 0.463334 | 4.2:+37150222 | MS.gene50069:CDS |
ATACGATATTGAGTTATGTA+AGG | 0.463612 | 4.2:-37149391 | None:intergenic |
TATGATCCAAGTTAGAAATT+GGG | 0.467513 | 4.2:-37149609 | None:intergenic |
TGGCTTGAGGAGATCCTTCA+GGG | 0.473228 | 4.2:-37149801 | None:intergenic |
TGAAGTTATGTAAGCTCCGT+TGG | 0.478150 | 4.2:-37149485 | None:intergenic |
ATGATTATAAGCAGTTATGT+AGG | 0.479774 | 4.2:-37149089 | None:intergenic |
ATGATTATAAGCAGTTATGT+AGG | 0.479774 | 4.2:-37149254 | None:intergenic |
TTACCATATCCAGTCATGTA+AGG | 0.480524 | 4.2:-37149304 | None:intergenic |
CAAAATCAAGTGGATTCAAA+TGG | 0.483359 | 4.2:+37149229 | MS.gene50069:CDS |
TGATATTGATGTTCCCAAAT+GGG | 0.483777 | 4.2:+37150026 | MS.gene50069:CDS |
TGGGAGATCTTCTACGGAGT+TGG | 0.486029 | 4.2:-37149590 | None:intergenic |
TATGATGTCATTGATCCAAA+AGG | 0.494967 | 4.2:+37149556 | MS.gene50069:CDS |
CTTCTACGGAGTTGGTAGAT+GGG | 0.498054 | 4.2:-37149582 | None:intergenic |
AGTAAATGGCATATGGATAT+GGG | 0.502163 | 4.2:-37150065 | None:intergenic |
TGGCTTTGGGATGGCTACAT+TGG | 0.503222 | 4.2:-37150297 | None:intergenic |
GAGTTACCATAAAGAAGAAA+AGG | 0.507028 | 4.2:-37148310 | None:intergenic |
ATCATGTGATACTTCTAAAA+CGG | 0.508731 | 4.2:-37150007 | None:intergenic |
AGAGGGATAGTTCTAGGTGA+GGG | 0.508920 | 4.2:-37149973 | None:intergenic |
GAGCACTTGAAGAGTGCGAA+GGG | 0.516914 | 4.2:+37149836 | MS.gene50069:CDS |
CTTCTTGGACCGGAAATTGG+AGG | 0.517939 | 4.2:-37149693 | None:intergenic |
TTCTACGGAGTTGGTAGATG+GGG | 0.526558 | 4.2:-37149581 | None:intergenic |
AGAAATTGGGAGATCTTCTA+CGG | 0.530034 | 4.2:-37149596 | None:intergenic |
GGTCTTTGTCTCCCCTGTAA+CGG | 0.530396 | 4.2:-37149863 | None:intergenic |
GGGAGTTGTGACATCGAGAA+AGG | 0.530459 | 4.2:-37149754 | None:intergenic |
TCAAATGAACCTTACATGAC+TGG | 0.531844 | 4.2:+37149295 | MS.gene50069:CDS |
CATACAGAAGCTTTCAAGAC+AGG | 0.532423 | 4.2:+37149628 | MS.gene50069:CDS |
AACAACCAAATTACATTACC+GGG | 0.532937 | 4.2:+37149173 | MS.gene50069:CDS |
AGCAACCAAATTACATTACT+GGG | 0.535052 | 4.2:+37149527 | MS.gene50069:CDS |
AAAAGAGTTGAAGAATACTT+GGG | 0.539336 | 4.2:-37149774 | None:intergenic |
GACAACTTGGGATTAAGGCT+GGG | 0.540548 | 4.2:+37150223 | MS.gene50069:CDS |
ACATTGGAATCCACATAAGA+TGG | 0.540746 | 4.2:-37150281 | None:intergenic |
AACAATCAAATTACATTACC+GGG | 0.544310 | 4.2:+37149338 | MS.gene50069:CDS |
ACATCATTGTAGATTGGCAG+AGG | 0.551845 | 4.2:+37149004 | MS.gene50069:intron |
ATGGTTATGGGTCCTATACC+CGG | 0.552015 | 4.2:-37149191 | None:intergenic |
ATGGTTATGGGTCCTATACC+CGG | 0.552015 | 4.2:-37149458 | None:intergenic |
TCACTTGTTAGTGATGAGAA+TGG | 0.555520 | 4.2:+37150129 | MS.gene50069:CDS |
TAAGGAGAAACTTCTTGGAC+CGG | 0.557579 | 4.2:-37149703 | None:intergenic |
ATCCACATAAGATGGTTCAC+AGG | 0.559204 | 4.2:-37150273 | None:intergenic |
ATATTATATTCAGACAACTT+GGG | 0.559590 | 4.2:+37150211 | MS.gene50069:CDS |
TCTAGGTGAGGGGTTGCTGG+TGG | 0.565202 | 4.2:-37149962 | None:intergenic |
ACTTCATATGATAAACATGA+AGG | 0.566668 | 4.2:+37149502 | MS.gene50069:CDS |
TCTACGGAGTTGGTAGATGG+GGG | 0.569022 | 4.2:-37149580 | None:intergenic |
TTCTTGGACCGGAAATTGGA+GGG | 0.569528 | 4.2:-37149692 | None:intergenic |
AGTTTGGATGATCTTCACGT+TGG | 0.576107 | 4.2:+37149658 | MS.gene50069:CDS |
TAGAGGGATAGTTCTAGGTG+AGG | 0.581869 | 4.2:-37149974 | None:intergenic |
TTGTGACATCGAGAAAGGAA+TGG | 0.584970 | 4.2:-37149749 | None:intergenic |
GCTGCGAGATCAAAATCAAG+TGG | 0.587722 | 4.2:+37149054 | MS.gene50069:CDS |
GCGAAGGGGAAACCGTTACA+GGG | 0.589433 | 4.2:+37149851 | MS.gene50069:CDS |
GGAGCACTTGAAGAGTGCGA+AGG | 0.589477 | 4.2:+37149835 | MS.gene50069:CDS |
CAACGGAGATCAAAATCAAG+TGG | 0.591165 | 4.2:+37149219 | MS.gene50069:CDS |
AGCAATCAAATTACATTACC+GGG | 0.594581 | 4.2:+37149440 | MS.gene50069:CDS |
AAATGGCATATGGATATGGG+AGG | 0.595703 | 4.2:-37150062 | None:intergenic |
ATGGTTATGGGTCTTATACC+CGG | 0.605292 | 4.2:-37149356 | None:intergenic |
ATGGCATATGGATATGGGAG+GGG | 0.608580 | 4.2:-37150060 | None:intergenic |
TGTGTCAACAAATTCGAGCA+TGG | 0.613242 | 4.2:-37149905 | None:intergenic |
GAGGGATAGTTCTAGGTGAG+GGG | 0.618840 | 4.2:-37149972 | None:intergenic |
ACCCATAACCATGAATCCAA+TGG | 0.622347 | 4.2:+37149367 | MS.gene50069:CDS |
ACCCATAACCATAAATCCAA+CGG | 0.633019 | 4.2:+37149202 | MS.gene50069:CDS |
ACCCATAACCATAAATCCAA+CGG | 0.633019 | 4.2:+37149469 | MS.gene50069:CDS |
GGACTCTAGAGAATTGGCAC+AGG | 0.635769 | 4.2:-37149884 | None:intergenic |
CATCGAGAAAGGAATGGAGT+CGG | 0.647174 | 4.2:-37149743 | None:intergenic |
CCTCAAGCCAAATCCATGAG+AGG | 0.648458 | 4.2:+37149814 | MS.gene50069:CDS |
TCCACATAAGATGGTTCACA+GGG | 0.658935 | 4.2:-37150272 | None:intergenic |
CGAAGGGGAAACCGTTACAG+GGG | 0.669441 | 4.2:+37149852 | MS.gene50069:CDS |
CTACGGAGTTGGTAGATGGG+GGG | 0.677778 | 4.2:-37149579 | None:intergenic |
AGCACTTGAAGAGTGCGAAG+GGG | 0.678572 | 4.2:+37149837 | MS.gene50069:CDS |
ACAGGGAAGAAATGACACAC+TGG | 0.683295 | 4.2:-37150255 | None:intergenic |
AATGGCATATGGATATGGGA+GGG | 0.696886 | 4.2:-37150061 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATATATATATATATATATAT+AGG | - | chr4.2:37148705-37148686 | None:intergenic | 0.0% |
!! | TATATATATATATATATATA+GGG | - | chr4.2:37148704-37148685 | None:intergenic | 0.0% |
!! | ACCTTAAAAAAAATTAAAAG+TGG | - | chr4.2:37148629-37148648 | None:intergenic | 15.0% |
!!! | TCCACTTTTAATTTTTTTTA+AGG | + | chr4.2:37148625-37148644 | MS.gene50069:intron | 15.0% |
!!! | TTTCAATTAATTTTTCTTTG+AGG | + | chr4.2:37148783-37148802 | MS.gene50069:intron | 15.0% |
!! | AAACAATCAAATTACATTAC+CGG | + | chr4.2:37149337-37149356 | MS.gene50069:CDS | 20.0% |
!! | ATATTATATTCAGACAACTT+GGG | + | chr4.2:37150211-37150230 | MS.gene50069:CDS | 20.0% |
!! | GTCTGAATATAATATGATTA+GGG | - | chr4.2:37150206-37150225 | None:intergenic | 20.0% |
!! | TAGTAATAGTGATATCAATT+TGG | + | chr4.2:37148883-37148902 | MS.gene50069:intron | 20.0% |
!! | TGTCTGAATATAATATGATT+AGG | - | chr4.2:37150207-37150226 | None:intergenic | 20.0% |
!!! | AGGACATGATATTTTTTTTT+TGG | + | chr4.2:37148579-37148598 | MS.gene50069:intron | 20.0% |
!!! | TTTTTTAAGGTGAATAAGTA+GGG | + | chr4.2:37148638-37148657 | MS.gene50069:intron | 20.0% |
!!! | TTTTTTTAAGGTGAATAAGT+AGG | + | chr4.2:37148637-37148656 | MS.gene50069:intron | 20.0% |
! | AAAAGAGTTGAAGAATACTT+GGG | - | chr4.2:37149777-37149796 | None:intergenic | 25.0% |
! | AAACAACCAAATTACATTAC+CGG | + | chr4.2:37149172-37149191 | MS.gene50069:CDS | 25.0% |
! | AACAATCAAATTACATTACC+GGG | + | chr4.2:37149338-37149357 | MS.gene50069:CDS | 25.0% |
! | AAGCAATCAAATTACATTAC+CGG | + | chr4.2:37149439-37149458 | MS.gene50069:CDS | 25.0% |
! | AATGTAATGGCAATAGTAAA+TGG | - | chr4.2:37150082-37150101 | None:intergenic | 25.0% |
! | ACTTCATATGATAAACATGA+AGG | + | chr4.2:37149502-37149521 | MS.gene50069:CDS | 25.0% |
! | ATACGATATTGAGTTATGTA+AGG | - | chr4.2:37149394-37149413 | None:intergenic | 25.0% |
! | ATCAATTTGGCTAATCAATT+GGG | + | chr4.2:37148896-37148915 | MS.gene50069:intron | 25.0% |
! | ATGATTATAAGCAGTTATGT+AGG | - | chr4.2:37149092-37149111 | None:intergenic | 25.0% |
! | CAATATCGTATAACTCAATA+TGG | + | chr4.2:37149403-37149422 | MS.gene50069:CDS | 25.0% |
! | CATATTATATTCAGACAACT+TGG | + | chr4.2:37150210-37150229 | MS.gene50069:CDS | 25.0% |
! | GGTAATGTAATTTGATTGTT+TGG | - | chr4.2:37149338-37149357 | None:intergenic | 25.0% |
! | TATCAATTTGGCTAATCAAT+TGG | + | chr4.2:37148895-37148914 | MS.gene50069:intron | 25.0% |
! | TATGATCCAAGTTAGAAATT+GGG | - | chr4.2:37149612-37149631 | None:intergenic | 25.0% |
! | TTTATGGTAACTCAGTTATA+GGG | + | chr4.2:37148320-37148339 | MS.gene50069:intron | 25.0% |
!! | ATCATGTGATACTTCTAAAA+CGG | - | chr4.2:37150010-37150029 | None:intergenic | 25.0% |
!! | ATTTGGTTCAAATATCACAA+AGG | + | chr4.2:37148368-37148387 | MS.gene50069:intron | 25.0% |
!! | CAAAATCAAGTGGATTTAAA+TGG | + | chr4.2:37149064-37149083 | MS.gene50069:CDS | 25.0% |
!! | TTTAGTCCTTTTCTTCTTTA+TGG | + | chr4.2:37148304-37148323 | MS.gene50069:CDS | 25.0% |
!! | TTTGGTTCAAATATCACAAA+GGG | + | chr4.2:37148369-37148388 | MS.gene50069:intron | 25.0% |
!!! | ACTATTGTTTTATCAACACT+TGG | + | chr4.2:37148540-37148559 | MS.gene50069:intron | 25.0% |
!!! | GAATTTGTTGACACAATTAT+TGG | + | chr4.2:37149913-37149932 | MS.gene50069:CDS | 25.0% |
AACAACCAAATTACATTACC+GGG | + | chr4.2:37149173-37149192 | MS.gene50069:CDS | 30.0% | |
AAGCAACCAAATTACATTAC+TGG | + | chr4.2:37149526-37149545 | MS.gene50069:CDS | 30.0% | |
AGCAACCAAATTACATTACT+GGG | + | chr4.2:37149527-37149546 | MS.gene50069:CDS | 30.0% | |
AGCAATCAAATTACATTACC+GGG | + | chr4.2:37149440-37149459 | MS.gene50069:CDS | 30.0% | |
AGTAAATGGCATATGGATAT+GGG | - | chr4.2:37150068-37150087 | None:intergenic | 30.0% | |
ATGATATTGATGTTCCCAAA+TGG | + | chr4.2:37150025-37150044 | MS.gene50069:CDS | 30.0% | |
ATGTAAGGTTCATTTGATTC+TGG | - | chr4.2:37149292-37149311 | None:intergenic | 30.0% | |
CTTTATGGTAACTCAGTTAT+AGG | + | chr4.2:37148319-37148338 | MS.gene50069:intron | 30.0% | |
GAAAAGAGTTGAAGAATACT+TGG | - | chr4.2:37149778-37149797 | None:intergenic | 30.0% | |
GAGTTACCATAAAGAAGAAA+AGG | - | chr4.2:37148313-37148332 | None:intergenic | 30.0% | |
GGTAATGTAATTTGATTGCT+TGG | - | chr4.2:37149440-37149459 | None:intergenic | 30.0% | |
GGTAATGTAATTTGGTTGTT+TGG | - | chr4.2:37149173-37149192 | None:intergenic | 30.0% | |
GTATGATCCAAGTTAGAAAT+TGG | - | chr4.2:37149613-37149632 | None:intergenic | 30.0% | |
TAGTAAATGGCATATGGATA+TGG | - | chr4.2:37150069-37150088 | None:intergenic | 30.0% | |
TATGAAATATTCATACCGAC+AGG | + | chr4.2:37148706-37148725 | MS.gene50069:intron | 30.0% | |
TATGATGTCATTGATCCAAA+AGG | + | chr4.2:37149556-37149575 | MS.gene50069:CDS | 30.0% | |
TCATTGACATCATTGTAGAT+TGG | + | chr4.2:37148998-37149017 | MS.gene50069:intron | 30.0% | |
TCCATTCAGATGTATCAAAA+TGG | - | chr4.2:37150182-37150201 | None:intergenic | 30.0% | |
TCTAAATTCACAAGGACATA+CGG | + | chr4.2:37148729-37148748 | MS.gene50069:intron | 30.0% | |
TGATATTGATGTTCCCAAAT+GGG | + | chr4.2:37150026-37150045 | MS.gene50069:CDS | 30.0% | |
TGATGAGAATGGAGATAAAA+TGG | + | chr4.2:37150140-37150159 | MS.gene50069:CDS | 30.0% | |
TTAATTGCAAGGACTTTCAA+GGG | - | chr4.2:37148850-37148869 | None:intergenic | 30.0% | |
TTACCATATCCAGTTATGTA+AGG | - | chr4.2:37149142-37149161 | None:intergenic | 30.0% | |
TTGTACCCAGTAATGTAATT+TGG | - | chr4.2:37149535-37149554 | None:intergenic | 30.0% | |
TTTAATTGCAAGGACTTTCA+AGG | - | chr4.2:37148851-37148870 | None:intergenic | 30.0% | |
! | CAAAATCAAGTGGATTCAAA+TGG | + | chr4.2:37149229-37149248 | MS.gene50069:CDS | 30.0% |
! | TTCATTTGATTCTGGTTGTT+TGG | - | chr4.2:37149284-37149303 | None:intergenic | 30.0% |
! | TTTAGAACCTAGAGCTTTAT+GGG | - | chr4.2:37148818-37148837 | None:intergenic | 30.0% |
!!! | TACATCACGTTTTAATTGCA+AGG | - | chr4.2:37148861-37148880 | None:intergenic | 30.0% |
ACATTGGAATCCACATAAGA+TGG | - | chr4.2:37150284-37150303 | None:intergenic | 35.0% | |
ACCATTGGATTCATGGTTAT+GGG | - | chr4.2:37149371-37149390 | None:intergenic | 35.0% | |
ACCCATAACCATAAATCCAA+CGG | + | chr4.2:37149202-37149221 | MS.gene50069:CDS | 35.0% | |
AGAAATTGGGAGATCTTCTA+CGG | - | chr4.2:37149599-37149618 | None:intergenic | 35.0% | |
AGATCTCCCAATTTCTAACT+TGG | + | chr4.2:37149603-37149622 | MS.gene50069:CDS | 35.0% | |
ATGTAAGGTTCATTCGATTC+TGG | - | chr4.2:37149127-37149146 | None:intergenic | 35.0% | |
ATTCAGACAACTTGGGATTA+AGG | + | chr4.2:37150218-37150237 | MS.gene50069:CDS | 35.0% | |
CAAATTACATTACCGGGTAT+AGG | + | chr4.2:37149179-37149198 | MS.gene50069:CDS | 35.0% | |
CAAGACAGGATATTTCAGTT+TGG | + | chr4.2:37149642-37149661 | MS.gene50069:CDS | 35.0% | |
CTATACCCGGTAATGTAATT+TGG | - | chr4.2:37149181-37149200 | None:intergenic | 35.0% | |
GAACCTTACATAACTGGATA+TGG | + | chr4.2:37149136-37149155 | MS.gene50069:CDS | 35.0% | |
GTTCAAATATCACAAAGGGA+GGG | + | chr4.2:37148373-37148392 | MS.gene50069:intron | 35.0% | |
TAATTGCAAGGACTTTCAAG+GGG | - | chr4.2:37148849-37148868 | None:intergenic | 35.0% | |
TAGTCTTTGTGGCAATGTAA+TGG | - | chr4.2:37150095-37150114 | None:intergenic | 35.0% | |
TCAAATGAACCTTACATGAC+TGG | + | chr4.2:37149295-37149314 | MS.gene50069:CDS | 35.0% | |
TCATGTCCTACAAAACTCTA+CGG | - | chr4.2:37148568-37148587 | None:intergenic | 35.0% | |
TCCGTTGGATTTATGGTTAT+GGG | - | chr4.2:37149206-37149225 | None:intergenic | 35.0% | |
TCCTTACCTCTCAAAAAAAG+AGG | + | chr4.2:37149720-37149739 | MS.gene50069:CDS | 35.0% | |
TCGAATGAACCTTACATAAC+TGG | + | chr4.2:37149130-37149149 | MS.gene50069:CDS | 35.0% | |
TGGCAATAGTAAATGGCATA+TGG | - | chr4.2:37150075-37150094 | None:intergenic | 35.0% | |
TTACCATATCCAGTCATGTA+AGG | - | chr4.2:37149307-37149326 | None:intergenic | 35.0% | |
TTGAGTTATGTAAGGACCAT+TGG | - | chr4.2:37149386-37149405 | None:intergenic | 35.0% | |
TTTGATCTCCGTTGGATTTA+TGG | - | chr4.2:37149213-37149232 | None:intergenic | 35.0% | |
! | CACAAAGACTAAAGTGTTCA+AGG | + | chr4.2:37150104-37150123 | MS.gene50069:CDS | 35.0% |
! | CTTGAACACTTTAGTCTTTG+TGG | - | chr4.2:37150106-37150125 | None:intergenic | 35.0% |
! | TCACTTGTTAGTGATGAGAA+TGG | + | chr4.2:37150129-37150148 | MS.gene50069:CDS | 35.0% |
! | TTCATTCGATTCTGGTTGTT+TGG | - | chr4.2:37149119-37149138 | None:intergenic | 35.0% |
! | TTTTGTAGAGGGATAGTTCT+AGG | - | chr4.2:37149982-37150001 | None:intergenic | 35.0% |
!! | CTTTAGAACCTAGAGCTTTA+TGG | - | chr4.2:37148819-37148838 | None:intergenic | 35.0% |
!! | GCCATTTTGATACATCTGAA+TGG | + | chr4.2:37150178-37150197 | MS.gene50069:CDS | 35.0% |
!!! | AAAACGGTGTAGTTTTGTAG+AGG | - | chr4.2:37149994-37150013 | None:intergenic | 35.0% |
!!! | AAACGGTGTAGTTTTGTAGA+GGG | - | chr4.2:37149993-37150012 | None:intergenic | 35.0% |
AAACTTCTTGGACCGGAAAT+TGG | - | chr4.2:37149699-37149718 | None:intergenic | 40.0% | |
AAATGGCATATGGATATGGG+AGG | - | chr4.2:37150065-37150084 | None:intergenic | 40.0% | |
AATGGCATATGGATATGGGA+GGG | - | chr4.2:37150064-37150083 | None:intergenic | 40.0% | |
ACATCATTGTAGATTGGCAG+AGG | + | chr4.2:37149004-37149023 | MS.gene50069:intron | 40.0% | |
ACCCATAACCATGAATCCAA+TGG | + | chr4.2:37149367-37149386 | MS.gene50069:CDS | 40.0% | |
AGAGGTAAGGAGAAACTTCT+TGG | - | chr4.2:37149711-37149730 | None:intergenic | 40.0% | |
AGTTTGGATGATCTTCACGT+TGG | + | chr4.2:37149658-37149677 | MS.gene50069:CDS | 40.0% | |
ATCCACATAAGATGGTTCAC+AGG | - | chr4.2:37150276-37150295 | None:intergenic | 40.0% | |
CAACGGAGATCAAAATCAAG+TGG | + | chr4.2:37149219-37149238 | MS.gene50069:CDS | 40.0% | |
CATACAGAAGCTTTCAAGAC+AGG | + | chr4.2:37149628-37149647 | MS.gene50069:CDS | 40.0% | |
CCAATATCCCATAAAGCTCT+AGG | + | chr4.2:37148808-37148827 | MS.gene50069:intron | 40.0% | |
CCTTGTGAATTTAGACCTGT+CGG | - | chr4.2:37148724-37148743 | None:intergenic | 40.0% | |
CTCCGTTGGATTTATGGTTA+TGG | - | chr4.2:37149207-37149226 | None:intergenic | 40.0% | |
GAACCTTACATGACTGGATA+TGG | + | chr4.2:37149301-37149320 | MS.gene50069:CDS | 40.0% | |
GACCATTGGATTCATGGTTA+TGG | - | chr4.2:37149372-37149391 | None:intergenic | 40.0% | |
GGAGATAAAATGGAAGCTCT+TGG | + | chr4.2:37150150-37150169 | MS.gene50069:CDS | 40.0% | |
GGTTCAAATATCACAAAGGG+AGG | + | chr4.2:37148372-37148391 | MS.gene50069:intron | 40.0% | |
TAAGGAGAAACTTCTTGGAC+CGG | - | chr4.2:37149706-37149725 | None:intergenic | 40.0% | |
TCCAAATATCCATCAACTGG+AGG | - | chr4.2:37148432-37148451 | None:intergenic | 40.0% | |
TCCACATAAGATGGTTCACA+GGG | - | chr4.2:37150275-37150294 | None:intergenic | 40.0% | |
TGAAGTTATGTAAGCTCCGT+TGG | - | chr4.2:37149488-37149507 | None:intergenic | 40.0% | |
TGTAAGCTCCGTTGGATTTA+TGG | - | chr4.2:37149480-37149499 | None:intergenic | 40.0% | |
TGTAAGGACCATTGGATTCA+TGG | - | chr4.2:37149378-37149397 | None:intergenic | 40.0% | |
TGTAATGACCCTCCAATTTC+CGG | + | chr4.2:37149684-37149703 | MS.gene50069:CDS | 40.0% | |
TGTGTCAACAAATTCGAGCA+TGG | - | chr4.2:37149908-37149927 | None:intergenic | 40.0% | |
TTGTGACATCGAGAAAGGAA+TGG | - | chr4.2:37149752-37149771 | None:intergenic | 40.0% | |
! | ATGGTTATGGGTCTTATACC+CGG | - | chr4.2:37149359-37149378 | None:intergenic | 40.0% |
! | CAACTCTTTTCAATCCCTGA+AGG | + | chr4.2:37149787-37149806 | MS.gene50069:CDS | 40.0% |
! | CCTAGAGCTTTATGGGATAT+TGG | - | chr4.2:37148811-37148830 | None:intergenic | 40.0% |
!! | AGTTGATGGATATTTGGAGG+GGG | + | chr4.2:37148434-37148453 | MS.gene50069:intron | 40.0% |
!! | CACTTGATTTTGATCTCCGT+TGG | - | chr4.2:37149221-37149240 | None:intergenic | 40.0% |
!! | CAGTTGATGGATATTTGGAG+GGG | + | chr4.2:37148433-37148452 | MS.gene50069:intron | 40.0% |
!! | CCAGTTGATGGATATTTGGA+GGG | + | chr4.2:37148432-37148451 | MS.gene50069:intron | 40.0% |
!! | TCCAGTTGATGGATATTTGG+AGG | + | chr4.2:37148431-37148450 | MS.gene50069:intron | 40.0% |
!! | TCCTCCAGTTGATGGATATT+TGG | + | chr4.2:37148428-37148447 | MS.gene50069:intron | 40.0% |
!!! | GCCTCTTTTTTTGAGAGGTA+AGG | - | chr4.2:37149724-37149743 | None:intergenic | 40.0% |
AAGTGCTCCTCTCATGGATT+TGG | - | chr4.2:37149824-37149843 | None:intergenic | 45.0% | |
ACAGGGAAGAAATGACACAC+TGG | - | chr4.2:37150258-37150277 | None:intergenic | 45.0% | |
AGACAACTTGGGATTAAGGC+TGG | + | chr4.2:37150222-37150241 | MS.gene50069:CDS | 45.0% | |
ATGGCATATGGATATGGGAG+GGG | - | chr4.2:37150063-37150082 | None:intergenic | 45.0% | |
ATGGTTATGGGTCCTATACC+CGG | - | chr4.2:37149194-37149213 | None:intergenic | 45.0% | |
CATCGAGAAAGGAATGGAGT+CGG | - | chr4.2:37149746-37149765 | None:intergenic | 45.0% | |
CCCTCCAAATATCCATCAAC+TGG | - | chr4.2:37148435-37148454 | None:intergenic | 45.0% | |
CCGACAGGTCTAAATTCACA+AGG | + | chr4.2:37148721-37148740 | MS.gene50069:intron | 45.0% | |
GACAACTTGGGATTAAGGCT+GGG | + | chr4.2:37150223-37150242 | MS.gene50069:CDS | 45.0% | |
GCTGCGAGATCAAAATCAAG+TGG | + | chr4.2:37149054-37149073 | MS.gene50069:CDS | 45.0% | |
GGATGACAAGCTACCCATTT+GGG | - | chr4.2:37150042-37150061 | None:intergenic | 45.0% | |
TCCCTGTGAACCATCTTATG+TGG | + | chr4.2:37150271-37150290 | MS.gene50069:CDS | 45.0% | |
TCTAACTCTCCTCCAGTTGA+TGG | + | chr4.2:37148420-37148439 | MS.gene50069:intron | 45.0% | |
TTCTTGGACCGGAAATTGGA+GGG | - | chr4.2:37149695-37149714 | None:intergenic | 45.0% | |
! | GAGCATGGACTCTAGAGAAT+TGG | - | chr4.2:37149893-37149912 | None:intergenic | 45.0% |
!! | AGAGGGATAGTTCTAGGTGA+GGG | - | chr4.2:37149976-37149995 | None:intergenic | 45.0% |
!! | CTTCTACGGAGTTGGTAGAT+GGG | - | chr4.2:37149585-37149604 | None:intergenic | 45.0% |
!! | TAGAGGGATAGTTCTAGGTG+AGG | - | chr4.2:37149977-37149996 | None:intergenic | 45.0% |
!! | TCTTCTACGGAGTTGGTAGA+TGG | - | chr4.2:37149586-37149605 | None:intergenic | 45.0% |
!! | TTCTACGGAGTTGGTAGATG+GGG | - | chr4.2:37149584-37149603 | None:intergenic | 45.0% |
!! | TTGGCACCGTAGAGTTTTGT+AGG | + | chr4.2:37148559-37148578 | MS.gene50069:intron | 45.0% |
!!! | AGTCGGCCTCTTTTTTTGAG+AGG | - | chr4.2:37149729-37149748 | None:intergenic | 45.0% |
!! | ATATATATATATATATATAG+GGG | - | chr4.2:37148684-37148703 | None:intergenic | 5.0% |
!!! | TATTTTAAATTTTAGTTATT+TGG | + | chr4.2:37148351-37148370 | MS.gene50069:intron | 5.0% |
AGGGGTTGAAGTTTGACCTC+AGG | - | chr4.2:37148666-37148685 | None:intergenic | 50.0% | |
CCTCAAGCCAAATCCATGAG+AGG | + | chr4.2:37149814-37149833 | MS.gene50069:CDS | 50.0% | |
CTCTTCAAGTGCTCCTCTCA+TGG | - | chr4.2:37149830-37149849 | None:intergenic | 50.0% | |
CTTCTTGGACCGGAAATTGG+AGG | - | chr4.2:37149696-37149715 | None:intergenic | 50.0% | |
GGGAGTTGTGACATCGAGAA+AGG | - | chr4.2:37149757-37149776 | None:intergenic | 50.0% | |
GGGATGACAAGCTACCCATT+TGG | - | chr4.2:37150043-37150062 | None:intergenic | 50.0% | |
GGTCTTTGTCTCCCCTGTAA+CGG | - | chr4.2:37149866-37149885 | None:intergenic | 50.0% | |
TGGCTTGAGGAGATCCTTCA+GGG | - | chr4.2:37149804-37149823 | None:intergenic | 50.0% | |
TGGGAGATCTTCTACGGAGT+TGG | - | chr4.2:37149593-37149612 | None:intergenic | 50.0% | |
! | AGCACTTGAAGAGTGCGAAG+GGG | + | chr4.2:37149837-37149856 | MS.gene50069:CDS | 50.0% |
! | GAGCACTTGAAGAGTGCGAA+GGG | + | chr4.2:37149836-37149855 | MS.gene50069:CDS | 50.0% |
! | GGACTCTAGAGAATTGGCAC+AGG | - | chr4.2:37149887-37149906 | None:intergenic | 50.0% |
! | GTGAATAAGTAGGGTGCCTG+AGG | + | chr4.2:37148647-37148666 | MS.gene50069:intron | 50.0% |
! | TTGGCTTGAGGAGATCCTTC+AGG | - | chr4.2:37149805-37149824 | None:intergenic | 50.0% |
!! | CCTCTCATGGATTTGGCTTG+AGG | - | chr4.2:37149817-37149836 | None:intergenic | 50.0% |
!! | GAGGGATAGTTCTAGGTGAG+GGG | - | chr4.2:37149975-37149994 | None:intergenic | 50.0% |
!! | TCTACGGAGTTGGTAGATGG+GGG | - | chr4.2:37149583-37149602 | None:intergenic | 50.0% |
CGAAGGGGAAACCGTTACAG+GGG | + | chr4.2:37149852-37149871 | MS.gene50069:CDS | 55.0% | |
GCGAAGGGGAAACCGTTACA+GGG | + | chr4.2:37149851-37149870 | MS.gene50069:CDS | 55.0% | |
TGCGAAGGGGAAACCGTTAC+AGG | + | chr4.2:37149850-37149869 | MS.gene50069:CDS | 55.0% | |
! | GGAGCACTTGAAGAGTGCGA+AGG | + | chr4.2:37149835-37149854 | MS.gene50069:CDS | 55.0% |
! | TTGGTAGATGGGGGGCCTTT+TGG | - | chr4.2:37149574-37149593 | None:intergenic | 55.0% |
!! | AGTTCTAGGTGAGGGGTTGC+TGG | - | chr4.2:37149968-37149987 | None:intergenic | 55.0% |
!! | CTACGGAGTTGGTAGATGGG+GGG | - | chr4.2:37149582-37149601 | None:intergenic | 55.0% |
TCTAGGTGAGGGGTTGCTGG+TGG | - | chr4.2:37149965-37149984 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.2 | gene | 37148272 | 37150305 | 37148272 | ID=MS.gene50069 |
chr4.2 | mRNA | 37148272 | 37150305 | 37148272 | ID=MS.gene50069.t1;Parent=MS.gene50069 |
chr4.2 | exon | 37148272 | 37148325 | 37148272 | ID=MS.gene50069.t1.exon1;Parent=MS.gene50069.t1 |
chr4.2 | CDS | 37148272 | 37148325 | 37148272 | ID=cds.MS.gene50069.t1;Parent=MS.gene50069.t1 |
chr4.2 | exon | 37149016 | 37150305 | 37149016 | ID=MS.gene50069.t1.exon2;Parent=MS.gene50069.t1 |
chr4.2 | CDS | 37149016 | 37150305 | 37149016 | ID=cds.MS.gene50069.t1;Parent=MS.gene50069.t1 |
Gene Sequence |
Protein sequence |