Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50638.t1 | XP_013468489.1 | 95 | 457 | 23 | 0 | 1 | 457 | 1 | 457 | 6.90E-250 | 872.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50638.t1 | Q94C59 | 45.8 | 334 | 171 | 5 | 128 | 457 | 201 | 528 | 1.4e-81 | 305.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50638.t1 | A0A072VLM7 | 95.0 | 457 | 23 | 0 | 1 | 457 | 1 | 457 | 5.0e-250 | 872.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049396 | MS.gene50638 | 0.800119 | 1.67E-48 | -1.69E-46 |
| MS.gene050868 | MS.gene50638 | 0.829307 | 5.54E-55 | -1.69E-46 |
| MS.gene050871 | MS.gene50638 | 0.833784 | 4.37E-56 | -1.69E-46 |
| MS.gene052164 | MS.gene50638 | 0.815408 | 9.39E-52 | -1.69E-46 |
| MS.gene053626 | MS.gene50638 | 0.851259 | 9.97E-61 | -1.69E-46 |
| MS.gene053633 | MS.gene50638 | 0.816187 | 6.29E-52 | -1.69E-46 |
| MS.gene054003 | MS.gene50638 | 0.858171 | 9.89E-63 | -1.69E-46 |
| MS.gene054595 | MS.gene50638 | 0.815071 | 1.12E-51 | -1.69E-46 |
| MS.gene055486 | MS.gene50638 | 0.821669 | 3.57E-53 | -1.69E-46 |
| MS.gene05601 | MS.gene50638 | 0.821736 | 3.45E-53 | -1.69E-46 |
| MS.gene056166 | MS.gene50638 | 0.843484 | 1.36E-58 | -1.69E-46 |
| MS.gene057086 | MS.gene50638 | 0.827408 | 1.59E-54 | -1.69E-46 |
| MS.gene057734 | MS.gene50638 | 0.817271 | 3.60E-52 | -1.69E-46 |
| MS.gene05787 | MS.gene50638 | 0.802116 | 6.54E-49 | -1.69E-46 |
| MS.gene058157 | MS.gene50638 | 0.829935 | 3.90E-55 | -1.69E-46 |
| MS.gene059367 | MS.gene50638 | 0.837218 | 5.92E-57 | -1.69E-46 |
| MS.gene059368 | MS.gene50638 | 0.818777 | 1.64E-52 | -1.69E-46 |
| MS.gene05995 | MS.gene50638 | 0.838062 | 3.59E-57 | -1.69E-46 |
| MS.gene05996 | MS.gene50638 | 0.837763 | 4.29E-57 | -1.69E-46 |
| MS.gene060295 | MS.gene50638 | 0.849743 | 2.66E-60 | -1.69E-46 |
| MS.gene060482 | MS.gene50638 | 0.813869 | 2.06E-51 | -1.69E-46 |
| MS.gene060483 | MS.gene50638 | -0.817177 | 3.77E-52 | -1.69E-46 |
| MS.gene060778 | MS.gene50638 | 0.821852 | 3.24E-53 | -1.69E-46 |
| MS.gene060837 | MS.gene50638 | 0.800247 | 1.58E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50638.t1 | MTR_1g069915 | 96.718 | 457 | 15 | 0 | 1 | 457 | 1 | 457 | 0.0 | 906 |
| MS.gene50638.t1 | MTR_2g031610 | 44.416 | 394 | 192 | 5 | 91 | 457 | 64 | 457 | 6.46e-117 | 351 |
| MS.gene50638.t1 | MTR_8g095360 | 44.606 | 343 | 176 | 6 | 120 | 457 | 158 | 491 | 1.24e-96 | 300 |
| MS.gene50638.t1 | MTR_4g033435 | 40.054 | 372 | 199 | 10 | 101 | 457 | 222 | 584 | 5.10e-89 | 283 |
| MS.gene50638.t1 | MTR_3g097350 | 40.469 | 341 | 190 | 7 | 118 | 451 | 221 | 555 | 2.18e-84 | 270 |
| MS.gene50638.t1 | MTR_4g013300 | 37.982 | 337 | 195 | 6 | 129 | 457 | 107 | 437 | 6.71e-80 | 255 |
| MS.gene50638.t1 | MTR_7g070480 | 38.150 | 346 | 203 | 6 | 118 | 457 | 71 | 411 | 3.08e-76 | 245 |
| MS.gene50638.t1 | MTR_4g033435 | 39.841 | 251 | 132 | 7 | 101 | 340 | 222 | 464 | 2.22e-53 | 186 |
| MS.gene50638.t1 | MTR_3g098530 | 28.507 | 221 | 129 | 9 | 142 | 353 | 62 | 262 | 3.30e-13 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50638.t1 | AT1G30690 | 45.808 | 334 | 171 | 5 | 128 | 457 | 201 | 528 | 1.31e-100 | 311 |
| MS.gene50638.t1 | AT1G30690 | 45.808 | 334 | 171 | 5 | 128 | 457 | 201 | 528 | 1.31e-100 | 311 |
| MS.gene50638.t1 | AT4G09160 | 44.838 | 339 | 167 | 6 | 131 | 457 | 301 | 631 | 2.19e-90 | 288 |
| MS.gene50638.t1 | AT4G09160 | 44.838 | 339 | 167 | 6 | 131 | 457 | 301 | 631 | 2.33e-90 | 288 |
| MS.gene50638.t1 | AT4G09160 | 44.838 | 339 | 167 | 6 | 131 | 457 | 326 | 656 | 3.08e-90 | 288 |
| MS.gene50638.t1 | AT1G72160 | 38.667 | 375 | 205 | 6 | 91 | 457 | 124 | 481 | 2.38e-83 | 265 |
| MS.gene50638.t1 | AT3G51670 | 40.060 | 332 | 188 | 6 | 132 | 457 | 69 | 395 | 3.34e-79 | 252 |
| MS.gene50638.t1 | AT1G22530 | 34.670 | 349 | 207 | 9 | 120 | 457 | 303 | 641 | 1.09e-64 | 220 |
| MS.gene50638.t1 | AT1G22530 | 34.957 | 349 | 206 | 9 | 120 | 457 | 337 | 675 | 1.77e-64 | 221 |
| MS.gene50638.t1 | AT1G72150 | 33.134 | 335 | 205 | 8 | 131 | 457 | 243 | 566 | 6.38e-58 | 201 |
Find 90 sgRNAs with CRISPR-Local
Find 143 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTATTGAGGAAATTCTTAA+AGG | 0.227165 | 1.2:+53157220 | MS.gene50638:CDS |
| AAAATTCAAGAAGCAATTAT+TGG | 0.227229 | 1.2:+53157074 | MS.gene50638:CDS |
| TTGTTAGGTGAAGGAGAAAA+AGG | 0.245387 | 1.2:+53157104 | MS.gene50638:CDS |
| ATCTTAGAGATATTACATTA+TGG | 0.248604 | 1.2:+53157153 | MS.gene50638:CDS |
| TAAAATTCTTGATGAAGATT+TGG | 0.250588 | 1.2:+53157319 | MS.gene50638:CDS |
| TGGTGTTGATGGAATTATTC+AGG | 0.274026 | 1.2:+53157538 | MS.gene50638:CDS |
| ATAGTAATAACAGTTGAAAA+TGG | 0.282119 | 1.2:+53158785 | MS.gene50638:CDS |
| AGCTCTTTCATTCCTTGAAT+TGG | 0.286220 | 1.2:-53157581 | None:intergenic |
| TTGTAGTAAATGCACCATTT+TGG | 0.309402 | 1.2:+53157782 | MS.gene50638:CDS |
| TTCTGGCAAATTCTCGTTGC+CGG | 0.319245 | 1.2:+53156788 | MS.gene50638:CDS |
| ATTATTGGAAAATATTTGTT+AGG | 0.321956 | 1.2:+53157089 | MS.gene50638:CDS |
| AAAATTCTTGATGAAGATTT+GGG | 0.329182 | 1.2:+53157320 | MS.gene50638:CDS |
| GCTCAACTCCGTCAGCAAAA+AGG | 0.352272 | 1.2:+53157601 | MS.gene50638:CDS |
| TTGTATGAACATTCATCATT+TGG | 0.366571 | 1.2:-53158689 | None:intergenic |
| ACGAGAATTTGCCAGAAAAC+TGG | 0.369041 | 1.2:-53156782 | None:intergenic |
| TCTTAGAGATATTACATTAT+GGG | 0.371202 | 1.2:+53157154 | MS.gene50638:CDS |
| TGTGCCCTACTTGGTAATAA+AGG | 0.371867 | 1.2:-53157182 | None:intergenic |
| GAGATGGAGGATTCAATTGA+TGG | 0.376525 | 1.2:+53157484 | MS.gene50638:CDS |
| AATTTGTACAAGAAGACATT+TGG | 0.376644 | 1.2:+53157434 | MS.gene50638:CDS |
| GAGCATCTTCCAGCTGGATA+TGG | 0.380972 | 1.2:+53158006 | MS.gene50638:CDS |
| GACACTCACCTGAGAAGAAT+TGG | 0.395803 | 1.2:-53157892 | None:intergenic |
| AATTTCATGTTGGTAGCTTC+TGG | 0.400803 | 1.2:-53158941 | None:intergenic |
| AGCCTAATCTCTGCAGGACT+TGG | 0.407088 | 1.2:-53157017 | None:intergenic |
| CAGCTGGATATGGTGGTCTA+AGG | 0.408968 | 1.2:+53158016 | MS.gene50638:CDS |
| TATCCAGCTGGAAGATGCTC+TGG | 0.411235 | 1.2:-53158003 | None:intergenic |
| CTACAAAACCAAAGTGTTGT+TGG | 0.411528 | 1.2:+53158719 | MS.gene50638:CDS |
| AGCTACCAACATGAAATTGA+TGG | 0.418460 | 1.2:+53158946 | MS.gene50638:CDS |
| TTGAAAAGTGCACCAATTCA+AGG | 0.425968 | 1.2:+53157569 | MS.gene50638:CDS |
| TGTGAAGTGTAGAGCCAAAA+TGG | 0.434368 | 1.2:-53157796 | None:intergenic |
| CAAGAGAAAGAAATCATTGT+TGG | 0.439581 | 1.2:+53157040 | MS.gene50638:CDS |
| TAGTAATAACAGTTGAAAAT+GGG | 0.440697 | 1.2:+53158786 | MS.gene50638:CDS |
| TGTTACAGAAGACATTGGTT+TGG | 0.442089 | 1.2:+53157276 | MS.gene50638:CDS |
| TGCTCTAAAACTTTATCATC+AGG | 0.448465 | 1.2:-53158063 | None:intergenic |
| CTCTTGAGCCTAATCTCTGC+AGG | 0.448756 | 1.2:-53157023 | None:intergenic |
| GGAAAATATTTGTTAGGTGA+AGG | 0.449552 | 1.2:+53157095 | MS.gene50638:CDS |
| CTTAAAGGCTAAAGATTACA+AGG | 0.464692 | 1.2:+53157235 | MS.gene50638:CDS |
| CGTTGCCGGAAAATCCGATC+AGG | 0.466677 | 1.2:+53156802 | MS.gene50638:CDS |
| AGAATTGGTGTGACCCTTTG+TGG | 0.480253 | 1.2:-53157877 | None:intergenic |
| GGCCCAGAGCATCTTCCAGC+TGG | 0.482220 | 1.2:+53158000 | MS.gene50638:CDS |
| TAGTGATGTGGAACGAGAAT+TGG | 0.486000 | 1.2:+53156971 | MS.gene50638:CDS |
| CTCATGGCCTCTTCCCTGAT+CGG | 0.487905 | 1.2:-53156816 | None:intergenic |
| GTACCTTCATGTGCCCTACT+TGG | 0.493972 | 1.2:-53157191 | None:intergenic |
| ATATTTGGATAGTAGAGATA+AGG | 0.496144 | 1.2:+53157364 | MS.gene50638:CDS |
| ACTGTTATTACTATCTTCCC+TGG | 0.497920 | 1.2:-53158776 | None:intergenic |
| TTGTTGAGCACCTCATTGAC+TGG | 0.499653 | 1.2:-53158123 | None:intergenic |
| GTGTTCCTTTATTACCAAGT+AGG | 0.502140 | 1.2:+53157177 | MS.gene50638:CDS |
| TGACCCTTTGTGGTCTTGCA+AGG | 0.502712 | 1.2:-53157867 | None:intergenic |
| TGCTGTCACCAACAACACTT+TGG | 0.503098 | 1.2:-53158727 | None:intergenic |
| TGTTCCTTTATTACCAAGTA+GGG | 0.503280 | 1.2:+53157178 | MS.gene50638:CDS |
| GGGTCACACCAATTCTTCTC+AGG | 0.506747 | 1.2:+53157884 | MS.gene50638:CDS |
| CACCAAGTCCTGCAGAGATT+AGG | 0.512586 | 1.2:+53157015 | MS.gene50638:CDS |
| CATCCTTGCAAGACCACAAA+GGG | 0.520308 | 1.2:+53157864 | MS.gene50638:CDS |
| CTTCACAAGTGTTATTCTCA+AGG | 0.523067 | 1.2:+53157812 | MS.gene50638:CDS |
| ATGAAATGTCACAGGTACAT+AGG | 0.530202 | 1.2:+53157979 | MS.gene50638:intron |
| TTGGTTGATGATGATGAGGT+AGG | 0.531055 | 1.2:+53156990 | MS.gene50638:CDS |
| ATGTGGGACATAACTGTTGT+TGG | 0.536809 | 1.2:+53158635 | MS.gene50638:CDS |
| GGAAAATCCGATCAGGGAAG+AGG | 0.541733 | 1.2:+53156809 | MS.gene50638:CDS |
| CTTAGAGATATTACATTATG+GGG | 0.542377 | 1.2:+53157155 | MS.gene50638:CDS |
| ATGTTCATCATTGCATTCAT+CGG | 0.544558 | 1.2:-53156844 | None:intergenic |
| GGACATAACTGTTGTTGGAT+GGG | 0.553153 | 1.2:+53158640 | MS.gene50638:CDS |
| GCATTCATCGGTATCACTCA+TGG | 0.553380 | 1.2:-53156832 | None:intergenic |
| TGGTTGATGATGATGAGGTA+GGG | 0.556544 | 1.2:+53156991 | MS.gene50638:CDS |
| TCGTAAACATAGTAACAAAC+CGG | 0.557690 | 1.2:-53157395 | None:intergenic |
| TAGAGATAAGGAAGGTCGAC+CGG | 0.565192 | 1.2:+53157376 | MS.gene50638:CDS |
| CTTAGACCACCATATCCAGC+TGG | 0.567452 | 1.2:-53158015 | None:intergenic |
| CATCTTCCAGCTGGATATGG+TGG | 0.574311 | 1.2:+53158009 | MS.gene50638:CDS |
| ATCCAGCTGGAAGATGCTCT+GGG | 0.577545 | 1.2:-53158002 | None:intergenic |
| TTCTGCCATCAATTTCATGT+TGG | 0.581698 | 1.2:-53158951 | None:intergenic |
| AATGAGGACGAAGATGATCA+TGG | 0.585537 | 1.2:+53156924 | MS.gene50638:CDS |
| GTTGTTTCAAAGCTATTACC+CGG | 0.594800 | 1.2:+53157631 | MS.gene50638:CDS |
| TGACATGTTACAGAAGACAT+TGG | 0.594854 | 1.2:+53157271 | MS.gene50638:CDS |
| CTGGATATGGTGGTCTAAGG+AGG | 0.598272 | 1.2:+53158019 | MS.gene50638:CDS |
| TGGATGGGAGGTGATTTACA+AGG | 0.598715 | 1.2:+53158655 | MS.gene50638:CDS |
| TTTGCCAGAAAACTGGAGCA+TGG | 0.611039 | 1.2:-53156775 | None:intergenic |
| AGACTGGAGTGACAATAATG+TGG | 0.612074 | 1.2:+53158618 | MS.gene50638:intron |
| CATAACTGTTGTTGGATGGG+AGG | 0.613416 | 1.2:+53158643 | MS.gene50638:CDS |
| GACTGGAGTGACAATAATGT+GGG | 0.615833 | 1.2:+53158619 | MS.gene50638:intron |
| GGGACATAACTGTTGTTGGA+TGG | 0.617419 | 1.2:+53158639 | MS.gene50638:CDS |
| AGTTGAATTTCCAGTCAATG+AGG | 0.619748 | 1.2:+53158113 | MS.gene50638:CDS |
| TTGGATAGTAGAGATAAGGA+AGG | 0.628322 | 1.2:+53157368 | MS.gene50638:CDS |
| TTACCAAGTAGGGCACATGA+AGG | 0.629064 | 1.2:+53157188 | MS.gene50638:CDS |
| TCATGATCTTGTTAGTGATG+TGG | 0.637441 | 1.2:+53156959 | MS.gene50638:CDS |
| TCAAATAAGACTTATCAATG+AGG | 0.649999 | 1.2:+53156908 | MS.gene50638:CDS |
| AAGGTACTGATATTGTATTG+AGG | 0.652952 | 1.2:+53157207 | MS.gene50638:CDS |
| GTTGCCGGAAAATCCGATCA+GGG | 0.653037 | 1.2:+53156803 | MS.gene50638:CDS |
| TCATCCTTGCAAGACCACAA+AGG | 0.655234 | 1.2:+53157863 | MS.gene50638:CDS |
| GGTTTGTTACTATGTTTACG+AGG | 0.673551 | 1.2:+53157397 | MS.gene50638:CDS |
| AGAATTGGTTGATGATGATG+AGG | 0.676048 | 1.2:+53156986 | MS.gene50638:CDS |
| GATGAATGCAATGATGAACA+TGG | 0.677939 | 1.2:+53156846 | MS.gene50638:CDS |
| ATGAATGCAATGATGAACAT+GGG | 0.696221 | 1.2:+53156847 | MS.gene50638:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGAAATAAATTAGAACAA+AGG | - | chr1.2:53158589-53158608 | None:intergenic | 15.0% |
| !! | AATAGAGTAAATATCTAAAT+TGG | - | chr1.2:53158546-53158565 | None:intergenic | 15.0% |
| !! | ATTATTGGAAAATATTTGTT+AGG | + | chr1.2:53157089-53157108 | MS.gene50638:CDS | 15.0% |
| !!! | TGAATTTTATGTTATACTTA+AGG | - | chr1.2:53157917-53157936 | None:intergenic | 15.0% |
| !! | AAAATTCAAGAAGCAATTAT+TGG | + | chr1.2:53157074-53157093 | MS.gene50638:CDS | 20.0% |
| !! | AAAATTCTTGATGAAGATTT+GGG | + | chr1.2:53157320-53157339 | MS.gene50638:CDS | 20.0% |
| !! | ATAGTAATAACAGTTGAAAA+TGG | + | chr1.2:53158785-53158804 | MS.gene50638:CDS | 20.0% |
| !! | ATCATTGATATTATTCACTT+AGG | + | chr1.2:53158357-53158376 | MS.gene50638:intron | 20.0% |
| !! | ATCTTAGAGATATTACATTA+TGG | + | chr1.2:53157153-53157172 | MS.gene50638:CDS | 20.0% |
| !! | TAAAATTCTTGATGAAGATT+TGG | + | chr1.2:53157319-53157338 | MS.gene50638:CDS | 20.0% |
| !! | TAGTAATAACAGTTGAAAAT+GGG | + | chr1.2:53158786-53158805 | MS.gene50638:CDS | 20.0% |
| !! | TCTTAGAGATATTACATTAT+GGG | + | chr1.2:53157154-53157173 | MS.gene50638:CDS | 20.0% |
| !!! | AAATTGGTCTTTGAAATTAT+AGG | - | chr1.2:53158530-53158549 | None:intergenic | 20.0% |
| !!! | ACATTTTTATAAACTATCTC+CGG | - | chr1.2:53157653-53157672 | None:intergenic | 20.0% |
| !!! | GATTTTCATTGAAATCTAAA+TGG | - | chr1.2:53156890-53156909 | None:intergenic | 20.0% |
| !!! | TATATTTTTTTGCATTCAGT+AGG | + | chr1.2:53158918-53158937 | MS.gene50638:intron | 20.0% |
| !!! | TTTTGAAAAAGTTGGATATT+TGG | + | chr1.2:53157349-53157368 | MS.gene50638:CDS | 20.0% |
| !!! | TTTTGTGTAAATATCAAATC+CGG | + | chr1.2:53158213-53158232 | MS.gene50638:intron | 20.0% |
| ! | AATTTGTACAAGAAGACATT+TGG | + | chr1.2:53157434-53157453 | MS.gene50638:CDS | 25.0% |
| ! | ACTTATTTGAGCTTATCTAT+TGG | + | chr1.2:53157690-53157709 | MS.gene50638:intron | 25.0% |
| ! | AGAAAAAATTTCATTGCCAA+AGG | + | chr1.2:53157127-53157146 | MS.gene50638:CDS | 25.0% |
| ! | ATATTTGGATAGTAGAGATA+AGG | + | chr1.2:53157364-53157383 | MS.gene50638:CDS | 25.0% |
| ! | CTTAGAGATATTACATTATG+GGG | + | chr1.2:53157155-53157174 | MS.gene50638:CDS | 25.0% |
| ! | TACAATATCTTCAAATGAAG+TGG | - | chr1.2:53158900-53158919 | None:intergenic | 25.0% |
| ! | TATGATAGCAAAATGAACAT+TGG | - | chr1.2:53158863-53158882 | None:intergenic | 25.0% |
| ! | TCAAATAAGACTTATCAATG+AGG | + | chr1.2:53156908-53156927 | MS.gene50638:CDS | 25.0% |
| ! | TGTATTGAGGAAATTCTTAA+AGG | + | chr1.2:53157220-53157239 | MS.gene50638:CDS | 25.0% |
| ! | TTAACATTATGAAATGTCAC+AGG | + | chr1.2:53157971-53157990 | MS.gene50638:intron | 25.0% |
| ! | TTGTATGAACATTCATCATT+TGG | - | chr1.2:53158692-53158711 | None:intergenic | 25.0% |
| !! | CATTTTTATAAACTATCTCC+GGG | - | chr1.2:53157652-53157671 | None:intergenic | 25.0% |
| !! | CTTTTTACATAAATGAACCA+GGG | + | chr1.2:53158759-53158778 | MS.gene50638:CDS | 25.0% |
| !! | TCTTTTTACATAAATGAACC+AGG | + | chr1.2:53158758-53158777 | MS.gene50638:CDS | 25.0% |
| !! | TTGGAATATTGATAACATGA+GGG | - | chr1.2:53158271-53158290 | None:intergenic | 25.0% |
| !! | TTTGGAATATTGATAACATG+AGG | - | chr1.2:53158272-53158291 | None:intergenic | 25.0% |
| !!! | ATATCTCTAAGATTTTCCTT+TGG | - | chr1.2:53157146-53157165 | None:intergenic | 25.0% |
| !!! | ATTAAGAAGTTGAGTTTTAG+AGG | + | chr1.2:53157515-53157534 | MS.gene50638:CDS | 25.0% |
| ACTCTATTTATGAACCATGT+TGG | + | chr1.2:53158558-53158577 | MS.gene50638:intron | 30.0% | |
| ATGAATGCAATGATGAACAT+GGG | + | chr1.2:53156847-53156866 | MS.gene50638:CDS | 30.0% | |
| ATGTTCATCATTGCATTCAT+CGG | - | chr1.2:53156847-53156866 | None:intergenic | 30.0% | |
| CAAGAGAAAGAAATCATTGT+TGG | + | chr1.2:53157040-53157059 | MS.gene50638:CDS | 30.0% | |
| CAATATTCCAAAATGACTCA+TGG | + | chr1.2:53158280-53158299 | MS.gene50638:intron | 30.0% | |
| CTTAAAGGCTAAAGATTACA+AGG | + | chr1.2:53157235-53157254 | MS.gene50638:CDS | 30.0% | |
| GATACAACCCTAAAATTTCA+AGG | - | chr1.2:53158240-53158259 | None:intergenic | 30.0% | |
| TATCATCAGGAGAAAAATCT+TGG | - | chr1.2:53158053-53158072 | None:intergenic | 30.0% | |
| TCGTAAACATAGTAACAAAC+CGG | - | chr1.2:53157398-53157417 | None:intergenic | 30.0% | |
| TGTAACAATCTAATCTCTCA+CGG | - | chr1.2:53158505-53158524 | None:intergenic | 30.0% | |
| TGTTCCTTTATTACCAAGTA+GGG | + | chr1.2:53157178-53157197 | MS.gene50638:CDS | 30.0% | |
| ! | GGAAAATATTTGTTAGGTGA+AGG | + | chr1.2:53157095-53157114 | MS.gene50638:CDS | 30.0% |
| ! | TGGAATATTGATAACATGAG+GGG | - | chr1.2:53158270-53158289 | None:intergenic | 30.0% |
| ! | TTGTAGTAAATGCACCATTT+TGG | + | chr1.2:53157782-53157801 | MS.gene50638:CDS | 30.0% |
| !! | AAGGTACTGATATTGTATTG+AGG | + | chr1.2:53157207-53157226 | MS.gene50638:CDS | 30.0% |
| !! | GGTTCTGATTTTGAAAAAGT+TGG | + | chr1.2:53157341-53157360 | MS.gene50638:CDS | 30.0% |
| !! | TGAACTTCTTTTTGTTTCTC+TGG | - | chr1.2:53157846-53157865 | None:intergenic | 30.0% |
| !! | TGCTCTAAAACTTTATCATC+AGG | - | chr1.2:53158066-53158085 | None:intergenic | 30.0% |
| !!! | AATGTGACTTGTTTTTGAGA+TGG | + | chr1.2:53157468-53157487 | MS.gene50638:CDS | 30.0% |
| AACCCTAAAATTTCAAGGAC+CGG | - | chr1.2:53158235-53158254 | None:intergenic | 35.0% | |
| ACTGTTATTACTATCTTCCC+TGG | - | chr1.2:53158779-53158798 | None:intergenic | 35.0% | |
| AGCTACCAACATGAAATTGA+TGG | + | chr1.2:53158946-53158965 | MS.gene50638:CDS | 35.0% | |
| AGCTCTTTCATTCCTTGAAT+TGG | - | chr1.2:53157584-53157603 | None:intergenic | 35.0% | |
| AGTTGAATTTCCAGTCAATG+AGG | + | chr1.2:53158113-53158132 | MS.gene50638:CDS | 35.0% | |
| ATGAAATGTCACAGGTACAT+AGG | + | chr1.2:53157979-53157998 | MS.gene50638:intron | 35.0% | |
| CCTCTATCTGAATCTGTTAT+CGG | + | chr1.2:53158330-53158349 | MS.gene50638:intron | 35.0% | |
| CGATAACAGATTCAGATAGA+GGG | - | chr1.2:53158332-53158351 | None:intergenic | 35.0% | |
| CTAGTCCCTACATATATCAA+TGG | + | chr1.2:53158425-53158444 | MS.gene50638:intron | 35.0% | |
| GATGAATGCAATGATGAACA+TGG | + | chr1.2:53156846-53156865 | MS.gene50638:CDS | 35.0% | |
| GTGTTCCTTTATTACCAAGT+AGG | + | chr1.2:53157177-53157196 | MS.gene50638:CDS | 35.0% | |
| TCATGATCTTGTTAGTGATG+TGG | + | chr1.2:53156959-53156978 | MS.gene50638:CDS | 35.0% | |
| TCCCTACATATATCAATGGA+GGG | + | chr1.2:53158429-53158448 | MS.gene50638:intron | 35.0% | |
| TCCCTCCATTGATATATGTA+GGG | - | chr1.2:53158433-53158452 | None:intergenic | 35.0% | |
| TGACATGTTACAGAAGACAT+TGG | + | chr1.2:53157271-53157290 | MS.gene50638:CDS | 35.0% | |
| TTCCCTCCATTGATATATGT+AGG | - | chr1.2:53158434-53158453 | None:intergenic | 35.0% | |
| TTCTGCCATCAATTTCATGT+TGG | - | chr1.2:53158954-53158973 | None:intergenic | 35.0% | |
| TTGGATAGTAGAGATAAGGA+AGG | + | chr1.2:53157368-53157387 | MS.gene50638:CDS | 35.0% | |
| TTGTTAGGTGAAGGAGAAAA+AGG | + | chr1.2:53157104-53157123 | MS.gene50638:CDS | 35.0% | |
| TTTCTTTGATGTGTCTAGAC+TGG | + | chr1.2:53158602-53158621 | MS.gene50638:intron | 35.0% | |
| ! | AATCCGGTCCTTGAAATTTT+AGG | + | chr1.2:53158229-53158248 | MS.gene50638:intron | 35.0% |
| ! | ATCCGGTCCTTGAAATTTTA+GGG | + | chr1.2:53158230-53158249 | MS.gene50638:intron | 35.0% |
| ! | CTTCACAAGTGTTATTCTCA+AGG | + | chr1.2:53157812-53157831 | MS.gene50638:CDS | 35.0% |
| ! | GTTGTTTCAAAGCTATTACC+CGG | + | chr1.2:53157631-53157650 | MS.gene50638:CDS | 35.0% |
| ! | TGCAATTCCATGAGTCATTT+TGG | - | chr1.2:53158290-53158309 | None:intergenic | 35.0% |
| ! | TGCAATTTCAGAGACCATTT+TGG | + | chr1.2:53158469-53158488 | MS.gene50638:intron | 35.0% |
| ! | TGTTACAGAAGACATTGGTT+TGG | + | chr1.2:53157276-53157295 | MS.gene50638:CDS | 35.0% |
| ! | TTGAAAAGTGCACCAATTCA+AGG | + | chr1.2:53157569-53157588 | MS.gene50638:CDS | 35.0% |
| !! | AATTTCATGTTGGTAGCTTC+TGG | - | chr1.2:53158944-53158963 | None:intergenic | 35.0% |
| !! | ACGGTATCGATATTCCAAAA+TGG | - | chr1.2:53158486-53158505 | None:intergenic | 35.0% |
| !! | AGAATTGGTTGATGATGATG+AGG | + | chr1.2:53156986-53157005 | MS.gene50638:CDS | 35.0% |
| !! | CTACAAAACCAAAGTGTTGT+TGG | + | chr1.2:53158719-53158738 | MS.gene50638:CDS | 35.0% |
| !! | GGTTTGTTACTATGTTTACG+AGG | + | chr1.2:53157397-53157416 | MS.gene50638:CDS | 35.0% |
| !! | TGGTGTTGATGGAATTATTC+AGG | + | chr1.2:53157538-53157557 | MS.gene50638:CDS | 35.0% |
| !!! | AAGAAGTTGAGTTTTAGAGG+TGG | + | chr1.2:53157518-53157537 | MS.gene50638:CDS | 35.0% |
| AATGAGGACGAAGATGATCA+TGG | + | chr1.2:53156924-53156943 | MS.gene50638:CDS | 40.0% | |
| ACGAGAATTTGCCAGAAAAC+TGG | - | chr1.2:53156785-53156804 | None:intergenic | 40.0% | |
| AGACTGGAGTGACAATAATG+TGG | + | chr1.2:53158618-53158637 | MS.gene50638:intron | 40.0% | |
| ATGTGGGACATAACTGTTGT+TGG | + | chr1.2:53158635-53158654 | MS.gene50638:CDS | 40.0% | |
| CCGATAACAGATTCAGATAG+AGG | - | chr1.2:53158333-53158352 | None:intergenic | 40.0% | |
| GAACAAAGGAAAGTCCAACA+TGG | - | chr1.2:53158575-53158594 | None:intergenic | 40.0% | |
| GACTGGAGTGACAATAATGT+GGG | + | chr1.2:53158619-53158638 | MS.gene50638:intron | 40.0% | |
| GAGATGGAGGATTCAATTGA+TGG | + | chr1.2:53157484-53157503 | MS.gene50638:CDS | 40.0% | |
| GGACATAACTGTTGTTGGAT+GGG | + | chr1.2:53158640-53158659 | MS.gene50638:CDS | 40.0% | |
| GTCCCTACATATATCAATGG+AGG | + | chr1.2:53158428-53158447 | MS.gene50638:intron | 40.0% | |
| TAGTGATGTGGAACGAGAAT+TGG | + | chr1.2:53156971-53156990 | MS.gene50638:CDS | 40.0% | |
| TGTGAAGTGTAGAGCCAAAA+TGG | - | chr1.2:53157799-53157818 | None:intergenic | 40.0% | |
| ! | AGTCTAGAGTGGCATTAAGT+TGG | - | chr1.2:53158405-53158424 | None:intergenic | 40.0% |
| ! | CATAAGAGCCTTTTTGCTGA+CGG | - | chr1.2:53157612-53157631 | None:intergenic | 40.0% |
| ! | TGTGCCCTACTTGGTAATAA+AGG | - | chr1.2:53157185-53157204 | None:intergenic | 40.0% |
| !! | TGGTTGATGATGATGAGGTA+GGG | + | chr1.2:53156991-53157010 | MS.gene50638:CDS | 40.0% |
| !! | TTGGTTGATGATGATGAGGT+AGG | + | chr1.2:53156990-53157009 | MS.gene50638:CDS | 40.0% |
| !!! | AGTTTTAGAGGTGGTGTTGA+TGG | + | chr1.2:53157527-53157546 | MS.gene50638:CDS | 40.0% |
| !!! | GTGACTTGTTTTTGAGATGG+AGG | + | chr1.2:53157471-53157490 | MS.gene50638:CDS | 40.0% |
| AGAATTGGTGTGACCCTTTG+TGG | - | chr1.2:53157880-53157899 | None:intergenic | 45.0% | |
| CATAACTGTTGTTGGATGGG+AGG | + | chr1.2:53158643-53158662 | MS.gene50638:CDS | 45.0% | |
| CATCCTTGCAAGACCACAAA+GGG | + | chr1.2:53157864-53157883 | MS.gene50638:CDS | 45.0% | |
| GACACTCACCTGAGAAGAAT+TGG | - | chr1.2:53157895-53157914 | None:intergenic | 45.0% | |
| GCATTCATCGGTATCACTCA+TGG | - | chr1.2:53156835-53156854 | None:intergenic | 45.0% | |
| GGGACATAACTGTTGTTGGA+TGG | + | chr1.2:53158639-53158658 | MS.gene50638:CDS | 45.0% | |
| TAGAGATAAGGAAGGTCGAC+CGG | + | chr1.2:53157376-53157395 | MS.gene50638:CDS | 45.0% | |
| TCATCCTTGCAAGACCACAA+AGG | + | chr1.2:53157863-53157882 | MS.gene50638:CDS | 45.0% | |
| TGCTGTCACCAACAACACTT+TGG | - | chr1.2:53158730-53158749 | None:intergenic | 45.0% | |
| TGGATGGGAGGTGATTTACA+AGG | + | chr1.2:53158655-53158674 | MS.gene50638:CDS | 45.0% | |
| TTACCAAGTAGGGCACATGA+AGG | + | chr1.2:53157188-53157207 | MS.gene50638:CDS | 45.0% | |
| TTCTGGCAAATTCTCGTTGC+CGG | + | chr1.2:53156788-53156807 | MS.gene50638:CDS | 45.0% | |
| TTGTTGAGCACCTCATTGAC+TGG | - | chr1.2:53158126-53158145 | None:intergenic | 45.0% | |
| ! | TCTTCCCTGATCGGATTTTC+CGG | - | chr1.2:53156810-53156829 | None:intergenic | 45.0% |
| AGCCTAATCTCTGCAGGACT+TGG | - | chr1.2:53157020-53157039 | None:intergenic | 50.0% | |
| ATCCAGCTGGAAGATGCTCT+GGG | - | chr1.2:53158005-53158024 | None:intergenic | 50.0% | |
| CACCAAGTCCTGCAGAGATT+AGG | + | chr1.2:53157015-53157034 | MS.gene50638:CDS | 50.0% | |
| CAGCTGGATATGGTGGTCTA+AGG | + | chr1.2:53158016-53158035 | MS.gene50638:CDS | 50.0% | |
| CATCTTCCAGCTGGATATGG+TGG | + | chr1.2:53158009-53158028 | MS.gene50638:CDS | 50.0% | |
| CTCTTGAGCCTAATCTCTGC+AGG | - | chr1.2:53157026-53157045 | None:intergenic | 50.0% | |
| CTGGATATGGTGGTCTAAGG+AGG | + | chr1.2:53158019-53158038 | MS.gene50638:CDS | 50.0% | |
| CTTAGACCACCATATCCAGC+TGG | - | chr1.2:53158018-53158037 | None:intergenic | 50.0% | |
| GAGCATCTTCCAGCTGGATA+TGG | + | chr1.2:53158006-53158025 | MS.gene50638:CDS | 50.0% | |
| GCTCAACTCCGTCAGCAAAA+AGG | + | chr1.2:53157601-53157620 | MS.gene50638:CDS | 50.0% | |
| GGAAAATCCGATCAGGGAAG+AGG | + | chr1.2:53156809-53156828 | MS.gene50638:CDS | 50.0% | |
| GGGTCACACCAATTCTTCTC+AGG | + | chr1.2:53157884-53157903 | MS.gene50638:CDS | 50.0% | |
| GTACCTTCATGTGCCCTACT+TGG | - | chr1.2:53157194-53157213 | None:intergenic | 50.0% | |
| GTAGGGACTAGAGTCTAGAG+TGG | - | chr1.2:53158416-53158435 | None:intergenic | 50.0% | |
| GTTGCCGGAAAATCCGATCA+GGG | + | chr1.2:53156803-53156822 | MS.gene50638:CDS | 50.0% | |
| TATCCAGCTGGAAGATGCTC+TGG | - | chr1.2:53158006-53158025 | None:intergenic | 50.0% | |
| ! | TGACCCTTTGTGGTCTTGCA+AGG | - | chr1.2:53157870-53157889 | None:intergenic | 50.0% |
| CGTTGCCGGAAAATCCGATC+AGG | + | chr1.2:53156802-53156821 | MS.gene50638:CDS | 55.0% | |
| CTCATGGCCTCTTCCCTGAT+CGG | - | chr1.2:53156819-53156838 | None:intergenic | 55.0% | |
| ! | GGCCCAGAGCATCTTCCAGC+TGG | + | chr1.2:53158000-53158019 | MS.gene50638:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 53156777 | 53158976 | 53156777 | ID=MS.gene50638 |
| chr1.2 | mRNA | 53156777 | 53158976 | 53156777 | ID=MS.gene50638.t1;Parent=MS.gene50638 |
| chr1.2 | exon | 53156777 | 53157670 | 53156777 | ID=MS.gene50638.t1.exon1;Parent=MS.gene50638.t1 |
| chr1.2 | CDS | 53156777 | 53157670 | 53156777 | ID=cds.MS.gene50638.t1;Parent=MS.gene50638.t1 |
| chr1.2 | exon | 53157781 | 53157905 | 53157781 | ID=MS.gene50638.t1.exon2;Parent=MS.gene50638.t1 |
| chr1.2 | CDS | 53157781 | 53157905 | 53157781 | ID=cds.MS.gene50638.t1;Parent=MS.gene50638.t1 |
| chr1.2 | exon | 53157993 | 53158134 | 53157993 | ID=MS.gene50638.t1.exon3;Parent=MS.gene50638.t1 |
| chr1.2 | CDS | 53157993 | 53158134 | 53157993 | ID=cds.MS.gene50638.t1;Parent=MS.gene50638.t1 |
| chr1.2 | exon | 53158620 | 53158828 | 53158620 | ID=MS.gene50638.t1.exon4;Parent=MS.gene50638.t1 |
| chr1.2 | CDS | 53158620 | 53158828 | 53158620 | ID=cds.MS.gene50638.t1;Parent=MS.gene50638.t1 |
| chr1.2 | exon | 53158937 | 53158976 | 53158937 | ID=MS.gene50638.t1.exon5;Parent=MS.gene50638.t1 |
| chr1.2 | CDS | 53158937 | 53158976 | 53158937 | ID=cds.MS.gene50638.t1;Parent=MS.gene50638.t1 |
| Gene Sequence |
| Protein sequence |
