Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51106.t1 | XP_024639058.1 | 98.6 | 561 | 8 | 0 | 1 | 561 | 1 | 561 | 0.00E+00 | 1129 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51106.t1 | G7K7B5 | 98.6 | 561 | 8 | 0 | 1 | 561 | 1 | 561 | 0.0e+00 | 1129.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049873 | MS.gene51106 | -0.800366 | 1.49E-48 | -1.69E-46 |
| MS.gene050277 | MS.gene51106 | -0.803981 | 2.69E-49 | -1.69E-46 |
| MS.gene050303 | MS.gene51106 | -0.839594 | 1.44E-57 | -1.69E-46 |
| MS.gene050815 | MS.gene51106 | -0.808463 | 3.06E-50 | -1.69E-46 |
| MS.gene051330 | MS.gene51106 | -0.807409 | 5.13E-50 | -1.69E-46 |
| MS.gene05134 | MS.gene51106 | -0.806049 | 9.94E-50 | -1.69E-46 |
| MS.gene052302 | MS.gene51106 | -0.808125 | 3.61E-50 | -1.69E-46 |
| MS.gene052376 | MS.gene51106 | -0.823139 | 1.63E-53 | -1.69E-46 |
| MS.gene053054 | MS.gene51106 | 0.806185 | 9.30E-50 | -1.69E-46 |
| MS.gene055808 | MS.gene51106 | -0.835616 | 1.51E-56 | -1.69E-46 |
| MS.gene056091 | MS.gene51106 | -0.804728 | 1.88E-49 | -1.69E-46 |
| MS.gene056631 | MS.gene51106 | -0.822724 | 2.03E-53 | -1.69E-46 |
| MS.gene056642 | MS.gene51106 | -0.819235 | 1.29E-52 | -1.69E-46 |
| MS.gene057060 | MS.gene51106 | -0.814803 | 1.28E-51 | -1.69E-46 |
| MS.gene057705 | MS.gene51106 | -0.801308 | 9.57E-49 | -1.69E-46 |
| MS.gene058216 | MS.gene51106 | -0.811337 | 7.36E-51 | -1.69E-46 |
| MS.gene05954 | MS.gene51106 | -0.831203 | 1.91E-55 | -1.69E-46 |
| MS.gene059569 | MS.gene51106 | -0.81187 | 5.64E-51 | -1.69E-46 |
| MS.gene06001 | MS.gene51106 | -0.819049 | 1.42E-52 | -1.69E-46 |
| MS.gene060429 | MS.gene51106 | -0.868773 | 5.09E-66 | -1.69E-46 |
| MS.gene060572 | MS.gene51106 | -0.804335 | 2.27E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51106.t1 | MTR_5g083740 | 98.574 | 561 | 8 | 0 | 1 | 561 | 1 | 561 | 0.0 | 1158 |
| MS.gene51106.t1 | MTR_3g072040 | 63.186 | 565 | 141 | 6 | 1 | 561 | 1 | 502 | 0.0 | 653 |
| MS.gene51106.t1 | MTR_3g072070 | 66.667 | 483 | 133 | 5 | 1 | 479 | 1 | 459 | 0.0 | 632 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51106.t1 | AT3G10980 | 59.298 | 570 | 206 | 10 | 5 | 560 | 6 | 563 | 0.0 | 631 |
| MS.gene51106.t1 | AT5G05350 | 56.929 | 534 | 199 | 7 | 30 | 560 | 20 | 525 | 0.0 | 598 |
Find 117 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGTTCTAGCAGTTTCTTTA+TGG | 0.127897 | 5.1:-65944868 | MS.gene51106:CDS |
| ATCTTATGCGTTGCTGTTTC+AGG | 0.172175 | 5.1:-65946031 | MS.gene51106:CDS |
| CGCATAAGATCCACGCAAAA+AGG | 0.191675 | 5.1:+65946044 | None:intergenic |
| CTAAGTTTGGCGATATCTTT+TGG | 0.228804 | 5.1:+65945833 | None:intergenic |
| CTAGGTAAAGATTATGATTC+TGG | 0.262677 | 5.1:-65945590 | MS.gene51106:CDS |
| GCATTCCTTGCCGACTTCTT+TGG | 0.266606 | 5.1:+65945962 | None:intergenic |
| TTTCGGCAAGCCTGCGGTTT+CGG | 0.267613 | 5.1:-65945120 | MS.gene51106:CDS |
| TTGAAGAAGTTGATCCTATT+AGG | 0.274814 | 5.1:+65946253 | None:intergenic |
| AATTATACCTCTTTCTCATT+TGG | 0.282202 | 5.1:+65945162 | None:intergenic |
| AGTGGCAAGACGCTTGAATT+TGG | 0.310045 | 5.1:+65946213 | None:intergenic |
| CACTTTGGCTATTCTGTTGT+TGG | 0.321220 | 5.1:-65945091 | MS.gene51106:CDS |
| GCAGTACTCCTTTCTAAGTT+TGG | 0.322615 | 5.1:+65945820 | None:intergenic |
| TTGTGCATTTGGTTGGAATA+TGG | 0.330037 | 5.1:-65945369 | MS.gene51106:CDS |
| CCTACTTATGACTTCTGTTT+CGG | 0.336304 | 5.1:-65945137 | MS.gene51106:CDS |
| GTGGAGGAATACTTGACATT+TGG | 0.338866 | 5.1:-65945433 | MS.gene51106:CDS |
| TCGAGAACTTGAAATATCTA+TGG | 0.347292 | 5.1:+65946336 | None:intergenic |
| AGGAGAACTTGTCCCAGATT+TGG | 0.348843 | 5.1:+65944938 | None:intergenic |
| GGTGTGTCATCAACCAAATC+TGG | 0.354088 | 5.1:-65944951 | MS.gene51106:CDS |
| ATTGAGGAATGTAACAATAA+TGG | 0.360036 | 5.1:-65946382 | MS.gene51106:CDS |
| CATTGAGTGCTATTCCTAAT+AGG | 0.364914 | 5.1:-65946267 | MS.gene51106:CDS |
| ACTTCATAACATAATGGTTT+CGG | 0.365084 | 5.1:-65946428 | None:intergenic |
| ATGGTTTCGGTTGATAATAA+TGG | 0.365993 | 5.1:-65946415 | MS.gene51106:CDS |
| ATCGGTGCACCTGCAATTGC+TGG | 0.371089 | 5.1:-65945635 | MS.gene51106:CDS |
| CACTTTGTGGTCTAAACTTA+GGG | 0.372572 | 5.1:-65945712 | MS.gene51106:CDS |
| GCACTTTGTGGTCTAAACTT+AGG | 0.372663 | 5.1:-65945713 | MS.gene51106:CDS |
| AGGATCAACTTCTTCAAAAT+CGG | 0.383821 | 5.1:-65946247 | MS.gene51106:CDS |
| AAGAAACTGCTAGAACTTAG+AGG | 0.389392 | 5.1:+65944873 | None:intergenic |
| TTTGCTCAATATGCACTTTG+TGG | 0.392887 | 5.1:-65945725 | MS.gene51106:CDS |
| AGATGACAATAGAATGGATT+AGG | 0.399686 | 5.1:-65946084 | MS.gene51106:CDS |
| CTTTGTATCACCGGCGGAGT+TGG | 0.401446 | 5.1:+65944765 | None:intergenic |
| TGGAGGAATACTTGACATTT+GGG | 0.407333 | 5.1:-65945432 | MS.gene51106:CDS |
| CTTGACGGTTTGAAAGTAGA+AGG | 0.422675 | 5.1:+65944897 | None:intergenic |
| TTTATCATCTACAATATGAT+AGG | 0.429440 | 5.1:+65945034 | None:intergenic |
| GAGCGCCCGGCCATCGGTGT+TGG | 0.439028 | 5.1:-65945677 | MS.gene51106:CDS |
| GCCAAGATGAAAATCCAAAA+GGG | 0.440423 | 5.1:+65945284 | None:intergenic |
| ATATTGAGGATGACACTGTT+AGG | 0.445757 | 5.1:-65945253 | MS.gene51106:CDS |
| CTTGCTCAAGAAATGCGAAC+GGG | 0.448066 | 5.1:-65945062 | MS.gene51106:CDS |
| GTATATAGACCAGCAATTGC+AGG | 0.456063 | 5.1:+65945626 | None:intergenic |
| AGGCAATGTCTAGTAGGTGC+TGG | 0.460261 | 5.1:-65945233 | MS.gene51106:CDS |
| ACAAGATGGTAGAATAACTT+TGG | 0.464879 | 5.1:+65945875 | None:intergenic |
| AGAAAGGAGTACTGCAAGAA+TGG | 0.467535 | 5.1:-65945812 | MS.gene51106:CDS |
| AATATGGAGAGACTTGGCTT+TGG | 0.469184 | 5.1:-65945353 | MS.gene51106:CDS |
| CTTGGCTGCTGTTAATATTG+AGG | 0.476409 | 5.1:-65945267 | MS.gene51106:CDS |
| CTAGAACTTAGAGGACTTGA+CGG | 0.477113 | 5.1:+65944882 | None:intergenic |
| ATCCTGTTCCTTGTCATGAC+TGG | 0.479597 | 5.1:-65946004 | MS.gene51106:CDS |
| TGTATCACCGGCGGAGTTGG+TGG | 0.481477 | 5.1:+65944768 | None:intergenic |
| AATCTTTACCTAGAGGACTA+AGG | 0.482009 | 5.1:+65945600 | None:intergenic |
| TCGCGACGCAGAGGTGAAAT+CGG | 0.484106 | 5.1:+65944975 | None:intergenic |
| TCATGAATGGAAACACATAA+TGG | 0.490549 | 5.1:-65945777 | MS.gene51106:CDS |
| TACCAGTCATGACAAGGAAC+AGG | 0.492780 | 5.1:+65946002 | None:intergenic |
| GAACTTATAAGCCTCATGAA+TGG | 0.495861 | 5.1:-65945790 | MS.gene51106:CDS |
| CATATTCCAACACCGATGGC+CGG | 0.496400 | 5.1:+65945671 | None:intergenic |
| TGAAGAAGATGACAATAGAA+TGG | 0.501131 | 5.1:-65946090 | MS.gene51106:CDS |
| AGATATCGCCAAACTTAGAA+AGG | 0.504835 | 5.1:-65945828 | MS.gene51106:CDS |
| ACGGAAGATAGTGGACCATC+TGG | 0.504935 | 5.1:+65944834 | None:intergenic |
| GGAGATTCTCTTTGTATCAC+CGG | 0.509159 | 5.1:+65944756 | None:intergenic |
| GGAGGATCCAAATGAGAAAG+AGG | 0.509367 | 5.1:-65945169 | MS.gene51106:CDS |
| AGTATTCCTCCACTCCACTT+TGG | 0.512153 | 5.1:+65945443 | None:intergenic |
| ATATTCCAACACCGATGGCC+GGG | 0.512263 | 5.1:+65945672 | None:intergenic |
| AGCCAAGATGAAAATCCAAA+AGG | 0.513987 | 5.1:+65945283 | None:intergenic |
| TATACAATCCTTAGTCCTCT+AGG | 0.515282 | 5.1:-65945608 | MS.gene51106:CDS |
| TCTGGGACAAGTTCTCCTCT+TGG | 0.516682 | 5.1:-65944933 | MS.gene51106:CDS |
| GGAATAGCACTCAATGTGCT+CGG | 0.531235 | 5.1:+65946274 | None:intergenic |
| GGTTGGAATATGGAGAGACT+TGG | 0.540609 | 5.1:-65945359 | MS.gene51106:CDS |
| CGGTTTCGGACTGCACACTT+TGG | 0.541886 | 5.1:-65945106 | MS.gene51106:CDS |
| ATCTTGTACTTCTGTGCCGA+TGG | 0.543050 | 5.1:-65945859 | MS.gene51106:CDS |
| CAAGCGTCTTGCCACTCAGA+TGG | 0.543275 | 5.1:-65946206 | MS.gene51106:CDS |
| TTATGCGTTGCTGTTTCAGG+TGG | 0.547321 | 5.1:-65946028 | MS.gene51106:CDS |
| GGCAATGTCTAGTAGGTGCT+GGG | 0.548348 | 5.1:-65945232 | MS.gene51106:CDS |
| ATAATGGTAGTGGTAATTCT+CGG | 0.552969 | 5.1:-65945761 | MS.gene51106:CDS |
| TAATGGTAAAGATGAAATTG+AGG | 0.553613 | 5.1:-65946398 | MS.gene51106:CDS |
| ATTATGTGTTTCCATTCATG+AGG | 0.556074 | 5.1:+65945779 | None:intergenic |
| GAATAGCACTCAATGTGCTC+GGG | 0.557900 | 5.1:+65946275 | None:intergenic |
| CCGAAACAGAAGTCATAAGT+AGG | 0.558846 | 5.1:+65945137 | None:intergenic |
| TTCAAGTTCTCGAAGAGCAA+TGG | 0.559290 | 5.1:-65946326 | MS.gene51106:CDS |
| AAGGCACAGATTGTGAAGCC+TGG | 0.561142 | 5.1:+65946182 | None:intergenic |
| AGATCTGAGCGCCCGGCCAT+CGG | 0.567721 | 5.1:-65945683 | MS.gene51106:CDS |
| ATGGAAACACATAATGGTAG+TGG | 0.568927 | 5.1:-65945771 | MS.gene51106:CDS |
| AGAAGTCGGCAAGGAATGCA+TGG | 0.573813 | 5.1:-65945958 | MS.gene51106:CDS |
| CTTCTGTTTCGGCAAGCCTG+CGG | 0.574737 | 5.1:-65945126 | MS.gene51106:CDS |
| GTGTGTCATCAACCAAATCT+GGG | 0.575863 | 5.1:-65944950 | MS.gene51106:CDS |
| ATTTCACCTCTGCGTCGCGA+AGG | 0.576158 | 5.1:-65944972 | MS.gene51106:CDS |
| AAGCTATGTGAACTCGGAGA+AGG | 0.576858 | 5.1:+65946163 | None:intergenic |
| TTCTGTGATTCCAAAGAAGT+CGG | 0.578176 | 5.1:-65945972 | MS.gene51106:CDS |
| TCTCTTAAGCTATGTGAACT+CGG | 0.578236 | 5.1:+65946157 | None:intergenic |
| ATGGAATATCATAGTCCAGA+TGG | 0.578861 | 5.1:-65944849 | MS.gene51106:CDS |
| GTATAAAAGATCTGAGCGCC+CGG | 0.584269 | 5.1:-65945690 | MS.gene51106:CDS |
| TGGATCGGACGAAGAATCAC+AGG | 0.586235 | 5.1:-65945570 | MS.gene51106:CDS |
| ACTGTTAGGCAATGTCTAGT+AGG | 0.586758 | 5.1:-65945239 | MS.gene51106:CDS |
| CATACAGAAAAGCATAAAAG+TGG | 0.591275 | 5.1:+65945310 | None:intergenic |
| TTGCTCAAGAAATGCGAACG+GGG | 0.591460 | 5.1:-65945061 | MS.gene51106:CDS |
| TCTTGCCACTCAGATGGACC+AGG | 0.594178 | 5.1:-65946200 | MS.gene51106:CDS |
| GCAGAGGTGAAATCGGCGGT+TGG | 0.594442 | 5.1:+65944982 | None:intergenic |
| AATGATTCCACCAACTCCGC+CGG | 0.599929 | 5.1:-65944775 | MS.gene51106:CDS |
| GTGCTCGGGAACTTTCTACC+AGG | 0.603559 | 5.1:+65946289 | None:intergenic |
| TCTTGCTCAAGAAATGCGAA+CGG | 0.603658 | 5.1:-65945063 | MS.gene51106:CDS |
| TAAAGATTATGATTCTGGAT+CGG | 0.607721 | 5.1:-65945585 | MS.gene51106:CDS |
| CCAAGATGAAAATCCAAAAG+GGG | 0.608853 | 5.1:+65945285 | None:intergenic |
| TGCTCAAGAAATGCGAACGG+GGG | 0.610733 | 5.1:-65945060 | MS.gene51106:CDS |
| GATTAGGAACCCGATGAACA+TGG | 0.611445 | 5.1:-65946068 | MS.gene51106:CDS |
| TGAGACTGAAATCATTTGAG+AGG | 0.616878 | 5.1:-65945514 | MS.gene51106:CDS |
| CAGTCGAAAATAGACCAAAG+TGG | 0.632679 | 5.1:-65945457 | MS.gene51106:CDS |
| AATAGACCAAAGTGGAGTGG+AGG | 0.635594 | 5.1:-65945449 | MS.gene51106:CDS |
| ATGGTGACAGATGAAAATCC+TGG | 0.643050 | 5.1:-65946307 | MS.gene51106:CDS |
| ATCGGCACAGAAGTACAAGA+TGG | 0.645219 | 5.1:+65945861 | None:intergenic |
| GACACACCTTCGCGACGCAG+AGG | 0.651096 | 5.1:+65944966 | None:intergenic |
| TGATTCCAAAGAAGTCGGCA+AGG | 0.653679 | 5.1:-65945967 | MS.gene51106:CDS |
| AGTGTGCAGTCCGAAACCGC+AGG | 0.654614 | 5.1:+65945110 | None:intergenic |
| TCAACATACCAGTCATGACA+AGG | 0.654796 | 5.1:+65945996 | None:intergenic |
| GATTCTCTTTGTATCACCGG+CGG | 0.656253 | 5.1:+65944759 | None:intergenic |
| GAAAATAGACCAAAGTGGAG+TGG | 0.658100 | 5.1:-65945452 | MS.gene51106:CDS |
| TATACATATTCCAACACCGA+TGG | 0.667440 | 5.1:+65945667 | None:intergenic |
| GGAGACGAGTTGACACCAAG+AGG | 0.669536 | 5.1:+65944918 | None:intergenic |
| GAATCATAATCTTTACCTAG+AGG | 0.677371 | 5.1:+65945593 | None:intergenic |
| CAAGATGAAAATCCAAAAGG+GGG | 0.678756 | 5.1:+65945286 | None:intergenic |
| CGACGCAGAGGTGAAATCGG+CGG | 0.690132 | 5.1:+65944978 | None:intergenic |
| TGAAGCCTGGTCCATCTGAG+TGG | 0.740360 | 5.1:+65946195 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATCATCTACAATATGAT+AGG | + | chr5.1:65946136-65946155 | None:intergenic | 20.0% |
| ! | AATTATACCTCTTTCTCATT+TGG | + | chr5.1:65946008-65946027 | None:intergenic | 25.0% |
| ! | ATTGAGGAATGTAACAATAA+TGG | - | chr5.1:65944785-65944804 | MS.gene51106:CDS | 25.0% |
| ! | TAAAGATTATGATTCTGGAT+CGG | - | chr5.1:65945582-65945601 | MS.gene51106:CDS | 25.0% |
| ! | TAATGGTAAAGATGAAATTG+AGG | - | chr5.1:65944769-65944788 | MS.gene51106:CDS | 25.0% |
| !! | ATATGTATAACTTTTGCGAT+CGG | - | chr5.1:65945514-65945533 | MS.gene51106:CDS | 25.0% |
| ACAAGATGGTAGAATAACTT+TGG | + | chr5.1:65945295-65945314 | None:intergenic | 30.0% | |
| AGGATCAACTTCTTCAAAAT+CGG | - | chr5.1:65944920-65944939 | MS.gene51106:CDS | 30.0% | |
| ATTATGTGTTTCCATTCATG+AGG | + | chr5.1:65945391-65945410 | None:intergenic | 30.0% | |
| CTAGGTAAAGATTATGATTC+TGG | - | chr5.1:65945577-65945596 | MS.gene51106:CDS | 30.0% | |
| GAATCATAATCTTTACCTAG+AGG | + | chr5.1:65945577-65945596 | None:intergenic | 30.0% | |
| TCATGAATGGAAACACATAA+TGG | - | chr5.1:65945390-65945409 | MS.gene51106:CDS | 30.0% | |
| TCGAGAACTTGAAATATCTA+TGG | + | chr5.1:65944834-65944853 | None:intergenic | 30.0% | |
| TGAAGAAGATGACAATAGAA+TGG | - | chr5.1:65945077-65945096 | MS.gene51106:CDS | 30.0% | |
| ! | AAGTTCTAGCAGTTTCTTTA+TGG | - | chr5.1:65946299-65946318 | MS.gene51106:CDS | 30.0% |
| ! | AGATGACAATAGAATGGATT+AGG | - | chr5.1:65945083-65945102 | MS.gene51106:CDS | 30.0% |
| ! | CACTTTTATGCTTTTCTGTA+TGG | - | chr5.1:65945858-65945877 | MS.gene51106:CDS | 30.0% |
| ! | CATACAGAAAAGCATAAAAG+TGG | + | chr5.1:65945860-65945879 | None:intergenic | 30.0% |
| ! | TTCAGAAAGCTCTTCTTTTA+CGG | + | chr5.1:65946355-65946374 | None:intergenic | 30.0% |
| ! | TTGAAGAAGTTGATCCTATT+AGG | + | chr5.1:65944917-65944936 | None:intergenic | 30.0% |
| !! | ATAATGGTAGTGGTAATTCT+CGG | - | chr5.1:65945406-65945425 | MS.gene51106:CDS | 30.0% |
| !! | ATGGTTTCGGTTGATAATAA+TGG | - | chr5.1:65944752-65944771 | MS.gene51106:CDS | 30.0% |
| !! | TTCTGTACTTTTTGTGCATT+TGG | - | chr5.1:65945787-65945806 | MS.gene51106:CDS | 30.0% |
| !!! | GGGATTGTTCTATGTTTTTT+CGG | - | chr5.1:65945955-65945974 | MS.gene51106:CDS | 30.0% |
| AAGAAACTGCTAGAACTTAG+AGG | + | chr5.1:65946297-65946316 | None:intergenic | 35.0% | |
| AATCTTTACCTAGAGGACTA+AGG | + | chr5.1:65945570-65945589 | None:intergenic | 35.0% | |
| AGATATCGCCAAACTTAGAA+AGG | - | chr5.1:65945339-65945358 | MS.gene51106:CDS | 35.0% | |
| AGCCAAGATGAAAATCCAAA+AGG | + | chr5.1:65945887-65945906 | None:intergenic | 35.0% | |
| ATATTGAGGATGACACTGTT+AGG | - | chr5.1:65945914-65945933 | MS.gene51106:CDS | 35.0% | |
| ATGGAAACACATAATGGTAG+TGG | - | chr5.1:65945396-65945415 | MS.gene51106:CDS | 35.0% | |
| ATGGAATATCATAGTCCAGA+TGG | - | chr5.1:65946318-65946337 | MS.gene51106:CDS | 35.0% | |
| CAAGATGAAAATCCAAAAGG+GGG | + | chr5.1:65945884-65945903 | None:intergenic | 35.0% | |
| CACTTTGTGGTCTAAACTTA+GGG | - | chr5.1:65945455-65945474 | MS.gene51106:CDS | 35.0% | |
| CCAAGATGAAAATCCAAAAG+GGG | + | chr5.1:65945885-65945904 | None:intergenic | 35.0% | |
| CCTACTTATGACTTCTGTTT+CGG | - | chr5.1:65946030-65946049 | MS.gene51106:CDS | 35.0% | |
| GAACTTATAAGCCTCATGAA+TGG | - | chr5.1:65945377-65945396 | MS.gene51106:CDS | 35.0% | |
| GCCAAGATGAAAATCCAAAA+GGG | + | chr5.1:65945886-65945905 | None:intergenic | 35.0% | |
| TATACAATCCTTAGTCCTCT+AGG | - | chr5.1:65945559-65945578 | MS.gene51106:CDS | 35.0% | |
| TATACATATTCCAACACCGA+TGG | + | chr5.1:65945503-65945522 | None:intergenic | 35.0% | |
| TCTCTTAAGCTATGTGAACT+CGG | + | chr5.1:65945013-65945032 | None:intergenic | 35.0% | |
| TGAGACTGAAATCATTTGAG+AGG | - | chr5.1:65945653-65945672 | MS.gene51106:CDS | 35.0% | |
| TGGAGGAATACTTGACATTT+GGG | - | chr5.1:65945735-65945754 | MS.gene51106:CDS | 35.0% | |
| TTCTGTGATTCCAAAGAAGT+CGG | - | chr5.1:65945195-65945214 | MS.gene51106:CDS | 35.0% | |
| TTGTGCATTTGGTTGGAATA+TGG | - | chr5.1:65945798-65945817 | MS.gene51106:CDS | 35.0% | |
| TTTGCTCAATATGCACTTTG+TGG | - | chr5.1:65945442-65945461 | MS.gene51106:CDS | 35.0% | |
| ! | CATTGAGTGCTATTCCTAAT+AGG | - | chr5.1:65944900-65944919 | MS.gene51106:CDS | 35.0% |
| ! | CGATATCTTTTGGATTCCAT+CGG | + | chr5.1:65945327-65945346 | None:intergenic | 35.0% |
| ! | CTAAGTTTGGCGATATCTTT+TGG | + | chr5.1:65945337-65945356 | None:intergenic | 35.0% |
| ! | GTTTTCAAAGAAACTCGACT+GGG | - | chr5.1:65945048-65945067 | MS.gene51106:CDS | 35.0% |
| ! | TCTTCTTTTACGGAAGATAG+TGG | + | chr5.1:65946345-65946364 | None:intergenic | 35.0% |
| ! | TGTTTTCAAAGAAACTCGAC+TGG | - | chr5.1:65945047-65945066 | MS.gene51106:CDS | 35.0% |
| !! | GTACTTTTTGTGCATTTGGT+TGG | - | chr5.1:65945791-65945810 | MS.gene51106:CDS | 35.0% |
| !!! | TGTTTTTTCGGTATGCTCTA+TGG | - | chr5.1:65945967-65945986 | MS.gene51106:CDS | 35.0% |
| AATATGGAGAGACTTGGCTT+TGG | - | chr5.1:65945814-65945833 | MS.gene51106:CDS | 40.0% | |
| ACTGTTAGGCAATGTCTAGT+AGG | - | chr5.1:65945928-65945947 | MS.gene51106:CDS | 40.0% | |
| ATGGTGACAGATGAAAATCC+TGG | - | chr5.1:65944860-65944879 | MS.gene51106:CDS | 40.0% | |
| CACTTTGGCTATTCTGTTGT+TGG | - | chr5.1:65946076-65946095 | MS.gene51106:CDS | 40.0% | |
| CAGTCGAAAATAGACCAAAG+TGG | - | chr5.1:65945710-65945729 | MS.gene51106:CDS | 40.0% | |
| CCGAAACAGAAGTCATAAGT+AGG | + | chr5.1:65946033-65946052 | None:intergenic | 40.0% | |
| CTAGAACTTAGAGGACTTGA+CGG | + | chr5.1:65946288-65946307 | None:intergenic | 40.0% | |
| CTTGACGGTTTGAAAGTAGA+AGG | + | chr5.1:65946273-65946292 | None:intergenic | 40.0% | |
| CTTGGCTGCTGTTAATATTG+AGG | - | chr5.1:65945900-65945919 | MS.gene51106:CDS | 40.0% | |
| GAAAATAGACCAAAGTGGAG+TGG | - | chr5.1:65945715-65945734 | MS.gene51106:CDS | 40.0% | |
| GCACTTTGTGGTCTAAACTT+AGG | - | chr5.1:65945454-65945473 | MS.gene51106:CDS | 40.0% | |
| GCAGTACTCCTTTCTAAGTT+TGG | + | chr5.1:65945350-65945369 | None:intergenic | 40.0% | |
| GCATAAGATCCACGCAAAAA+GGG | + | chr5.1:65945125-65945144 | None:intergenic | 40.0% | |
| GGAGATTCTCTTTGTATCAC+CGG | + | chr5.1:65946414-65946433 | None:intergenic | 40.0% | |
| GTATATAGACCAGCAATTGC+AGG | + | chr5.1:65945544-65945563 | None:intergenic | 40.0% | |
| GTGGAGGAATACTTGACATT+TGG | - | chr5.1:65945734-65945753 | MS.gene51106:CDS | 40.0% | |
| GTGTGTCATCAACCAAATCT+GGG | - | chr5.1:65946217-65946236 | MS.gene51106:CDS | 40.0% | |
| TCAACATACCAGTCATGACA+AGG | + | chr5.1:65945174-65945193 | None:intergenic | 40.0% | |
| TCTTGCTCAAGAAATGCGAA+CGG | - | chr5.1:65946104-65946123 | MS.gene51106:CDS | 40.0% | |
| ! | CCCCTTTTGGATTTTCATCT+TGG | - | chr5.1:65945882-65945901 | MS.gene51106:CDS | 40.0% |
| ! | GTATGCTCTATGGTGGTTTT+TGG | - | chr5.1:65945977-65945996 | MS.gene51106:CDS | 40.0% |
| ! | TTCAAGTTCTCGAAGAGCAA+TGG | - | chr5.1:65944841-65944860 | MS.gene51106:CDS | 40.0% |
| !! | AGAAAGGAGTACTGCAAGAA+TGG | - | chr5.1:65945355-65945374 | MS.gene51106:CDS | 40.0% |
| !! | ATCTTATGCGTTGCTGTTTC+AGG | - | chr5.1:65945136-65945155 | MS.gene51106:CDS | 40.0% |
| !! | TTTTTCGGTATGCTCTATGG+TGG | - | chr5.1:65945970-65945989 | MS.gene51106:CDS | 40.0% |
| AAGCTATGTGAACTCGGAGA+AGG | + | chr5.1:65945007-65945026 | None:intergenic | 45.0% | |
| AATAGACCAAAGTGGAGTGG+AGG | - | chr5.1:65945718-65945737 | MS.gene51106:CDS | 45.0% | |
| AGGAGAACTTGTCCCAGATT+TGG | + | chr5.1:65946232-65946251 | None:intergenic | 45.0% | |
| AGTATTCCTCCACTCCACTT+TGG | + | chr5.1:65945727-65945746 | None:intergenic | 45.0% | |
| AGTGGCAAGACGCTTGAATT+TGG | + | chr5.1:65944957-65944976 | None:intergenic | 45.0% | |
| ATCCTGTTCCTTGTCATGAC+TGG | - | chr5.1:65945163-65945182 | MS.gene51106:CDS | 45.0% | |
| ATCTTGTACTTCTGTGCCGA+TGG | - | chr5.1:65945308-65945327 | MS.gene51106:CDS | 45.0% | |
| CAAAAAGGGCCATGTTCATC+GGG | + | chr5.1:65945111-65945130 | None:intergenic | 45.0% | |
| CGCATAAGATCCACGCAAAA+AGG | + | chr5.1:65945126-65945145 | None:intergenic | 45.0% | |
| CTTGCTCAAGAAATGCGAAC+GGG | - | chr5.1:65946105-65946124 | MS.gene51106:CDS | 45.0% | |
| GAATAGCACTCAATGTGCTC+GGG | + | chr5.1:65944895-65944914 | None:intergenic | 45.0% | |
| GATTAGGAACCCGATGAACA+TGG | - | chr5.1:65945099-65945118 | MS.gene51106:CDS | 45.0% | |
| GATTCTCTTTGTATCACCGG+CGG | + | chr5.1:65946411-65946430 | None:intergenic | 45.0% | |
| GCAAAAAGGGCCATGTTCAT+CGG | + | chr5.1:65945112-65945131 | None:intergenic | 45.0% | |
| GGAATAGCACTCAATGTGCT+CGG | + | chr5.1:65944896-65944915 | None:intergenic | 45.0% | |
| GGAGGATCCAAATGAGAAAG+AGG | - | chr5.1:65945998-65946017 | MS.gene51106:CDS | 45.0% | |
| GGTGTGTCATCAACCAAATC+TGG | - | chr5.1:65946216-65946235 | MS.gene51106:CDS | 45.0% | |
| GGTTGGAATATGGAGAGACT+TGG | - | chr5.1:65945808-65945827 | MS.gene51106:CDS | 45.0% | |
| GTATAAAAGATCTGAGCGCC+CGG | - | chr5.1:65945477-65945496 | MS.gene51106:CDS | 45.0% | |
| TACCAGTCATGACAAGGAAC+AGG | + | chr5.1:65945168-65945187 | None:intergenic | 45.0% | |
| TGATTCCAAAGAAGTCGGCA+AGG | - | chr5.1:65945200-65945219 | MS.gene51106:CDS | 45.0% | |
| TTGCTCAAGAAATGCGAACG+GGG | - | chr5.1:65946106-65946125 | MS.gene51106:CDS | 45.0% | |
| ! | ATCGGCACAGAAGTACAAGA+TGG | + | chr5.1:65945309-65945328 | None:intergenic | 45.0% |
| ! | TTTTCTGTATGGCCCCCTTT+TGG | - | chr5.1:65945869-65945888 | MS.gene51106:CDS | 45.0% |
| !! | TGCTCTATGGTGGTTTTTGG+AGG | - | chr5.1:65945980-65945999 | MS.gene51106:CDS | 45.0% |
| !! | TTATGCGTTGCTGTTTCAGG+TGG | - | chr5.1:65945139-65945158 | MS.gene51106:CDS | 45.0% |
| AAGGCACAGATTGTGAAGCC+TGG | + | chr5.1:65944988-65945007 | None:intergenic | 50.0% | |
| AATGATTCCACCAACTCCGC+CGG | - | chr5.1:65946392-65946411 | MS.gene51106:CDS | 50.0% | |
| AGAAGTCGGCAAGGAATGCA+TGG | - | chr5.1:65945209-65945228 | MS.gene51106:CDS | 50.0% | |
| AGGCAATGTCTAGTAGGTGC+TGG | - | chr5.1:65945934-65945953 | MS.gene51106:CDS | 50.0% | |
| ATATTCCAACACCGATGGCC+GGG | + | chr5.1:65945498-65945517 | None:intergenic | 50.0% | |
| CATATTCCAACACCGATGGC+CGG | + | chr5.1:65945499-65945518 | None:intergenic | 50.0% | |
| GGCAATGTCTAGTAGGTGCT+GGG | - | chr5.1:65945935-65945954 | MS.gene51106:CDS | 50.0% | |
| TGCTCAAGAAATGCGAACGG+GGG | - | chr5.1:65946107-65946126 | MS.gene51106:CDS | 50.0% | |
| TGGATCGGACGAAGAATCAC+AGG | - | chr5.1:65945597-65945616 | MS.gene51106:CDS | 50.0% | |
| ! | TCTGGGACAAGTTCTCCTCT+TGG | - | chr5.1:65946234-65946253 | MS.gene51106:CDS | 50.0% |
| ! | TGAACATGGCCCTTTTTGCG+TGG | - | chr5.1:65945113-65945132 | MS.gene51106:CDS | 50.0% |
| !! | ACGGAAGATAGTGGACCATC+TGG | + | chr5.1:65946336-65946355 | None:intergenic | 50.0% |
| !! | GCATTCCTTGCCGACTTCTT+TGG | + | chr5.1:65945208-65945227 | None:intergenic | 50.0% |
| ATCGGTGCACCTGCAATTGC+TGG | - | chr5.1:65945532-65945551 | MS.gene51106:CDS | 55.0% | |
| ATTTCACCTCTGCGTCGCGA+AGG | - | chr5.1:65946195-65946214 | MS.gene51106:CDS | 55.0% | |
| CAAGCGTCTTGCCACTCAGA+TGG | - | chr5.1:65944961-65944980 | MS.gene51106:CDS | 55.0% | |
| CGGTTTCGGACTGCACACTT+TGG | - | chr5.1:65946061-65946080 | MS.gene51106:CDS | 55.0% | |
| CTTCTGTTTCGGCAAGCCTG+CGG | - | chr5.1:65946041-65946060 | MS.gene51106:CDS | 55.0% | |
| CTTTGTATCACCGGCGGAGT+TGG | + | chr5.1:65946405-65946424 | None:intergenic | 55.0% | |
| GTGCTCGGGAACTTTCTACC+AGG | + | chr5.1:65944881-65944900 | None:intergenic | 55.0% | |
| TCGCGACGCAGAGGTGAAAT+CGG | + | chr5.1:65946195-65946214 | None:intergenic | 55.0% | |
| TCTTGCCACTCAGATGGACC+AGG | - | chr5.1:65944967-65944986 | MS.gene51106:CDS | 55.0% | |
| TGAAGCCTGGTCCATCTGAG+TGG | + | chr5.1:65944975-65944994 | None:intergenic | 55.0% | |
| TTTCGGCAAGCCTGCGGTTT+CGG | - | chr5.1:65946047-65946066 | MS.gene51106:CDS | 55.0% | |
| ! | GGAGACGAGTTGACACCAAG+AGG | + | chr5.1:65946252-65946271 | None:intergenic | 55.0% |
| AGTGTGCAGTCCGAAACCGC+AGG | + | chr5.1:65946060-65946079 | None:intergenic | 60.0% | |
| CGACGCAGAGGTGAAATCGG+CGG | + | chr5.1:65946192-65946211 | None:intergenic | 60.0% | |
| GCAGAGGTGAAATCGGCGGT+TGG | + | chr5.1:65946188-65946207 | None:intergenic | 60.0% | |
| TGTATCACCGGCGGAGTTGG+TGG | + | chr5.1:65946402-65946421 | None:intergenic | 60.0% | |
| AGATCTGAGCGCCCGGCCAT+CGG | - | chr5.1:65945484-65945503 | MS.gene51106:CDS | 65.0% | |
| GACACACCTTCGCGACGCAG+AGG | + | chr5.1:65946204-65946223 | None:intergenic | 65.0% | |
| GAGCGCCCGGCCATCGGTGT+TGG | - | chr5.1:65945490-65945509 | MS.gene51106:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 65944752 | 65946437 | 65944752 | ID=MS.gene51106 |
| chr5.1 | mRNA | 65944752 | 65946437 | 65944752 | ID=MS.gene51106.t1;Parent=MS.gene51106 |
| chr5.1 | exon | 65944752 | 65946437 | 65944752 | ID=MS.gene51106.t1.exon1;Parent=MS.gene51106.t1 |
| chr5.1 | CDS | 65944752 | 65946437 | 65944752 | ID=cds.MS.gene51106.t1;Parent=MS.gene51106.t1 |
| Gene Sequence |
| Protein sequence |
