Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51538.t1 | XP_003588876.1 | 91.8 | 73 | 6 | 0 | 1 | 73 | 2 | 74 | 3.20E-29 | 137.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51538.t1 | Q96319 | 79.2 | 72 | 15 | 0 | 2 | 73 | 5 | 76 | 5.8e-27 | 120.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51538.t1 | G7I895 | 91.8 | 73 | 6 | 0 | 1 | 73 | 2 | 74 | 2.3e-29 | 137.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene51538 | 0.847964 | 8.29E-60 | -1.69E-46 |
| MS.gene049404 | MS.gene51538 | 0.80075 | 1.24E-48 | -1.69E-46 |
| MS.gene049567 | MS.gene51538 | 0.801135 | 1.04E-48 | -1.69E-46 |
| MS.gene049873 | MS.gene51538 | 0.805582 | 1.25E-49 | -1.69E-46 |
| MS.gene050559 | MS.gene51538 | 0.817706 | 2.87E-52 | -1.69E-46 |
| MS.gene050561 | MS.gene51538 | 0.81467 | 1.37E-51 | -1.69E-46 |
| MS.gene050562 | MS.gene51538 | 0.801762 | 7.73E-49 | -1.69E-46 |
| MS.gene050780 | MS.gene51538 | 0.805013 | 1.64E-49 | -1.69E-46 |
| MS.gene051247 | MS.gene51538 | 0.807799 | 4.24E-50 | -1.69E-46 |
| MS.gene051744 | MS.gene51538 | 0.868201 | 7.78E-66 | -1.69E-46 |
| MS.gene052208 | MS.gene51538 | 0.820582 | 6.36E-53 | -1.69E-46 |
| MS.gene052582 | MS.gene51538 | 0.800065 | 1.72E-48 | -1.69E-46 |
| MS.gene052584 | MS.gene51538 | 0.803491 | 3.40E-49 | -1.69E-46 |
| MS.gene053006 | MS.gene51538 | 0.801776 | 7.68E-49 | -1.69E-46 |
| MS.gene053226 | MS.gene51538 | 0.840482 | 8.47E-58 | -1.69E-46 |
| MS.gene053998 | MS.gene51538 | 0.823477 | 1.36E-53 | -1.69E-46 |
| MS.gene054651 | MS.gene51538 | 0.805061 | 1.60E-49 | -1.69E-46 |
| MS.gene055778 | MS.gene51538 | 0.841163 | 5.61E-58 | -1.69E-46 |
| MS.gene055818 | MS.gene51538 | 0.814932 | 1.20E-51 | -1.69E-46 |
| MS.gene056366 | MS.gene51538 | 0.812611 | 3.89E-51 | -1.69E-46 |
| MS.gene05686 | MS.gene51538 | 0.812302 | 4.54E-51 | -1.69E-46 |
| MS.gene057026 | MS.gene51538 | 0.805715 | 1.17E-49 | -1.69E-46 |
| MS.gene057314 | MS.gene51538 | 0.81723 | 3.67E-52 | -1.69E-46 |
| MS.gene058037 | MS.gene51538 | 0.814898 | 1.22E-51 | -1.69E-46 |
| MS.gene058477 | MS.gene51538 | 0.813289 | 2.76E-51 | -1.69E-46 |
| MS.gene058979 | MS.gene51538 | 0.813937 | 1.99E-51 | -1.69E-46 |
| MS.gene059015 | MS.gene51538 | 0.82476 | 6.78E-54 | -1.69E-46 |
| MS.gene060521 | MS.gene51538 | 0.80986 | 1.54E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51538.t1 | MTR_1g014230 | 91.781 | 73 | 6 | 0 | 1 | 73 | 2 | 74 | 4.52e-44 | 137 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51538.t1 | AT5G10810 | 79.167 | 72 | 15 | 0 | 2 | 73 | 5 | 76 | 1.47e-37 | 121 |
Find 11 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGAGCTACCAGAACTTTCA+TGG | 0.334223 | 1.4:+7929177 | MS.gene51538:CDS |
| GTGAAAATCCATGAAAGTTC+TGG | 0.356886 | 1.4:-7929185 | None:intergenic |
| AGAAGTTTGAATTAGAATAA+TGG | 0.430839 | 1.4:-7929149 | None:intergenic |
| TAAGAGATATTTCTGACGGC+TGG | 0.446674 | 1.4:-7931117 | None:intergenic |
| AAATATCTCTTATGATATCA+TGG | 0.475878 | 1.4:+7931128 | MS.gene51538:CDS |
| TCCATCTCTCTTGCTATCGA+TGG | 0.553990 | 1.4:+7929208 | MS.gene51538:CDS |
| GCATATGTGGACTGTATGAA+AGG | 0.565109 | 1.4:+7931076 | MS.gene51538:CDS |
| ATCATAAGAGATATTTCTGA+CGG | 0.580337 | 1.4:-7931121 | None:intergenic |
| GATCTCTACAACTTCATAGA+CGG | 0.620195 | 1.4:+7931150 | MS.gene51538:CDS |
| ACCATCGATAGCAAGAGAGA+TGG | 0.627765 | 1.4:-7929209 | None:intergenic |
| ACTGTATGAAAGGAAACTGA+AGG | 0.645635 | 1.4:+7931086 | MS.gene51538:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTAGATAAATTTTTGAAA+AGG | - | chr1.4:7930106-7930125 | None:intergenic | 10.0% |
| !! | AAACATCATAATATTTAAAC+AGG | - | chr1.4:7930467-7930486 | None:intergenic | 15.0% |
| !! | ATAATACGGAAAAATAATAA+AGG | - | chr1.4:7930786-7930805 | None:intergenic | 15.0% |
| !! | CCTTATTCTTATAATAAAAT+TGG | + | chr1.4:7930428-7930447 | MS.gene51538:intron | 15.0% |
| !! | TATCAACAAAGAATATAATA+CGG | - | chr1.4:7930800-7930819 | None:intergenic | 15.0% |
| !! | TGTTTAAATATTATGATGTT+TGG | + | chr1.4:7930466-7930485 | MS.gene51538:intron | 15.0% |
| !!! | AAAAATGATTTTTTTTAACG+TGG | + | chr1.4:7929752-7929771 | MS.gene51538:intron | 15.0% |
| !!! | CCAATTTTATTATAAGAATA+AGG | - | chr1.4:7930431-7930450 | None:intergenic | 15.0% |
| !!! | GAGATTATATATTAGTTTAT+CGG | - | chr1.4:7929348-7929367 | None:intergenic | 15.0% |
| !! | AAATATCTCTTATGATATCA+TGG | + | chr1.4:7931128-7931147 | MS.gene51538:CDS | 20.0% |
| !! | AAGTATCAACAAAGAATAAA+GGG | - | chr1.4:7931002-7931021 | None:intergenic | 20.0% |
| !! | ACATAAAAAGAAAAGAAACT+TGG | - | chr1.4:7930001-7930020 | None:intergenic | 20.0% |
| !! | AGAAGTTTGAATTAGAATAA+TGG | - | chr1.4:7929152-7929171 | None:intergenic | 20.0% |
| !! | ATGATGAGATTTATTAGTTA+TGG | + | chr1.4:7929942-7929961 | MS.gene51538:intron | 20.0% |
| !! | CAAAATAAACACAAACTTTA+CGG | - | chr1.4:7930553-7930572 | None:intergenic | 20.0% |
| !! | CATAAAAAGAAAAGAAACTT+GGG | - | chr1.4:7930000-7930019 | None:intergenic | 20.0% |
| !! | TATCTTAAATTATGATTGAC+TGG | - | chr1.4:7930365-7930384 | None:intergenic | 20.0% |
| !! | TATTATGCATAGTATTCTTA+AGG | - | chr1.4:7929370-7929389 | None:intergenic | 20.0% |
| !!! | AAAAAGAAAGCATTATAACA+AGG | - | chr1.4:7929908-7929927 | None:intergenic | 20.0% |
| !!! | AAAGTATCAACAAAGAATAA+AGG | - | chr1.4:7931003-7931022 | None:intergenic | 20.0% |
| !!! | ACAAGAGTATAAAATTAAGA+TGG | - | chr1.4:7930025-7930044 | None:intergenic | 20.0% |
| !!! | ATATGGTTTTCATTAATTTG+TGG | + | chr1.4:7929588-7929607 | MS.gene51538:intron | 20.0% |
| !!! | ATGTATATGATGTGATTTTA+AGG | - | chr1.4:7930203-7930222 | None:intergenic | 20.0% |
| !!! | ATTCTTTGTTGATACTTTTA+GGG | + | chr1.4:7930806-7930825 | MS.gene51538:intron | 20.0% |
| !!! | TATTCTTTGTTGATACTTTT+AGG | + | chr1.4:7930805-7930824 | MS.gene51538:intron | 20.0% |
| !!! | TATTTTCTAGGTTGTTAATA+GGG | + | chr1.4:7930700-7930719 | MS.gene51538:intron | 20.0% |
| !!! | TTATTTTCTAGGTTGTTAAT+AGG | + | chr1.4:7930699-7930718 | MS.gene51538:intron | 20.0% |
| !!! | TTTTAATCATGTGTTTTTAC+AGG | + | chr1.4:7931054-7931073 | MS.gene51538:intron | 20.0% |
| !!! | TTTTGTCGTTTTTTTGTTTT+TGG | + | chr1.4:7929391-7929410 | MS.gene51538:intron | 20.0% |
| ! | ATAATAAAGGATGTAAATCC+CGG | - | chr1.4:7930773-7930792 | None:intergenic | 25.0% |
| ! | ATACATTTGTTCTCCTTATT+TGG | - | chr1.4:7929675-7929694 | None:intergenic | 25.0% |
| ! | ATTACAATGACAATGCTAAA+AGG | - | chr1.4:7929473-7929492 | None:intergenic | 25.0% |
| ! | CTAATCTGTTATATTTCTCT+AGG | - | chr1.4:7929632-7929651 | None:intergenic | 25.0% |
| ! | GACTTATGAAAATCCAAATA+AGG | + | chr1.4:7929659-7929678 | MS.gene51538:intron | 25.0% |
| ! | TAAGAATTCAACACATCAAA+AGG | + | chr1.4:7930071-7930090 | MS.gene51538:intron | 25.0% |
| ! | TATAGTAGTCTAATAGTTAG+AGG | + | chr1.4:7929692-7929711 | MS.gene51538:intron | 25.0% |
| ! | TCATTATCAGCATTAAATAG+AGG | + | chr1.4:7931031-7931050 | MS.gene51538:intron | 25.0% |
| ! | TGAAAACCATATATTCTTGA+TGG | - | chr1.4:7929580-7929599 | None:intergenic | 25.0% |
| ! | TTACAATGACAATGCTAAAA+GGG | - | chr1.4:7929472-7929491 | None:intergenic | 25.0% |
| !! | ACATCTGGAAATTATTTTCT+AGG | + | chr1.4:7930688-7930707 | MS.gene51538:intron | 25.0% |
| !! | ATCATAAGAGATATTTCTGA+CGG | - | chr1.4:7931124-7931143 | None:intergenic | 25.0% |
| !! | ATTTTCTAGGTTGTTAATAG+GGG | + | chr1.4:7930701-7930720 | MS.gene51538:intron | 25.0% |
| !! | CGTAAAGTTTGTGTTTATTT+TGG | + | chr1.4:7930551-7930570 | MS.gene51538:intron | 25.0% |
| !! | GCATTGTCATTGTAATATTT+TGG | + | chr1.4:7929477-7929496 | MS.gene51538:intron | 25.0% |
| !! | TTCTTTGTTGATACTTTTAG+GGG | + | chr1.4:7930807-7930826 | MS.gene51538:intron | 25.0% |
| !!! | TATATGATGTGATTTTAAGG+AGG | - | chr1.4:7930200-7930219 | None:intergenic | 25.0% |
| ATGGTAATAACCATCTACTT+GGG | + | chr1.4:7929227-7929246 | MS.gene51538:intron | 30.0% | |
| ATTGTTTCAATGTGACTGAA+AGG | + | chr1.4:7930852-7930871 | MS.gene51538:intron | 30.0% | |
| GAACATACTGTTTCAATATG+TGG | + | chr1.4:7930624-7930643 | MS.gene51538:intron | 30.0% | |
| GCATTACCATCAAGAATATA+TGG | + | chr1.4:7929571-7929590 | MS.gene51538:intron | 30.0% | |
| GTGTTATGGACTTCAAAAAT+TGG | + | chr1.4:7930395-7930414 | MS.gene51538:intron | 30.0% | |
| TCTGGACATGATTTATGATT+GGG | + | chr1.4:7929780-7929799 | MS.gene51538:intron | 30.0% | |
| ! | ATCACGATTGCATTTAAAAC+AGG | - | chr1.4:7930246-7930265 | None:intergenic | 30.0% |
| ! | TAATTTAAGATACTTTCGCG+AGG | + | chr1.4:7930373-7930392 | MS.gene51538:intron | 30.0% |
| ! | TCTTTGTTGATACTTTTAGG+GGG | + | chr1.4:7930808-7930827 | MS.gene51538:intron | 30.0% |
| !! | GTGATTTTAAGGAGGAATTA+AGG | - | chr1.4:7930192-7930211 | None:intergenic | 30.0% |
| !!! | TTTGGTTTTAACTGTGACTT+TGG | + | chr1.4:7929495-7929514 | MS.gene51538:intron | 30.0% |
| AAACTAATGCACCAAATGCT+TGG | - | chr1.4:7929435-7929454 | None:intergenic | 35.0% | |
| AATCAGTACCTGTGTTTGAT+GGG | - | chr1.4:7930129-7930148 | None:intergenic | 35.0% | |
| ACTGTATGAAAGGAAACTGA+AGG | + | chr1.4:7931086-7931105 | MS.gene51538:CDS | 35.0% | |
| AGTAAGAAAACGACAGTGAA+AGG | - | chr1.4:7929843-7929862 | None:intergenic | 35.0% | |
| AGTCTAATAGTTAGAGGTAG+AGG | + | chr1.4:7929698-7929717 | MS.gene51538:intron | 35.0% | |
| ATTTGTGGAACGCATACTAT+AGG | + | chr1.4:7929603-7929622 | MS.gene51538:intron | 35.0% | |
| CATACAATACACCAAATGGT+GGG | + | chr1.4:7930928-7930947 | MS.gene51538:intron | 35.0% | |
| CTCTGGACATGATTTATGAT+TGG | + | chr1.4:7929779-7929798 | MS.gene51538:intron | 35.0% | |
| GATCTCTACAACTTCATAGA+CGG | + | chr1.4:7931150-7931169 | MS.gene51538:CDS | 35.0% | |
| GATGGTAATAACCATCTACT+TGG | + | chr1.4:7929226-7929245 | MS.gene51538:intron | 35.0% | |
| GTGAAAATCCATGAAAGTTC+TGG | - | chr1.4:7929188-7929207 | None:intergenic | 35.0% | |
| GTGATATAGGACAATACATC+TGG | + | chr1.4:7930673-7930692 | MS.gene51538:intron | 35.0% | |
| GTTGCATACAATACACCAAA+TGG | + | chr1.4:7930924-7930943 | MS.gene51538:intron | 35.0% | |
| TAAGGAGGAATTAAGGCAAT+TGG | - | chr1.4:7930185-7930204 | None:intergenic | 35.0% | |
| TAATCAGTACCTGTGTTTGA+TGG | - | chr1.4:7930130-7930149 | None:intergenic | 35.0% | |
| TATTGATGTAAGCAGCGAAA+TGG | - | chr1.4:7930289-7930308 | None:intergenic | 35.0% | |
| TCATTGCTTCACAGTGATAT+AGG | + | chr1.4:7930660-7930679 | MS.gene51538:intron | 35.0% | |
| TCTTGTGTGAAAACAAGGTA+AGG | + | chr1.4:7930902-7930921 | MS.gene51538:intron | 35.0% | |
| TGACTTTGGATTGTGGAATT+TGG | + | chr1.4:7929509-7929528 | MS.gene51538:intron | 35.0% | |
| TTAACTGTGACTTTGGATTG+TGG | + | chr1.4:7929502-7929521 | MS.gene51538:intron | 35.0% | |
| TTATGATGTTTGGCTGTATG+AGG | + | chr1.4:7930476-7930495 | MS.gene51538:intron | 35.0% | |
| TTTGGCAGAGGAAGAATAAA+TGG | + | chr1.4:7929527-7929546 | MS.gene51538:intron | 35.0% | |
| TTTGTGGAACGCATACTATA+GGG | + | chr1.4:7929604-7929623 | MS.gene51538:intron | 35.0% | |
| ! | ATCTAAAACCCATCAAACAC+AGG | + | chr1.4:7930118-7930137 | MS.gene51538:intron | 35.0% |
| ! | CATTTAAAACAGGCGATTGA+AGG | - | chr1.4:7930236-7930255 | None:intergenic | 35.0% |
| !! | AAGCATTTGGTGCATTAGTT+TGG | + | chr1.4:7929434-7929453 | MS.gene51538:intron | 35.0% |
| !! | CTTTGTTGATACTTTTAGGG+GGG | + | chr1.4:7930809-7930828 | MS.gene51538:intron | 35.0% |
| !! | TGTGTTTTTACAGGCATATG+TGG | + | chr1.4:7931063-7931082 | MS.gene51538:intron | 35.0% |
| !!! | TTTTTTAACGTGGTTTGCTC+TGG | + | chr1.4:7929762-7929781 | MS.gene51538:intron | 35.0% |
| AACACCAAGCACATAGTTGA+TGG | - | chr1.4:7930521-7930540 | None:intergenic | 40.0% | |
| AAGTCCATCAACTATGTGCT+TGG | + | chr1.4:7930514-7930533 | MS.gene51538:intron | 40.0% | |
| AGGAATTAAGGCAATTGGAG+GGG | - | chr1.4:7930180-7930199 | None:intergenic | 40.0% | |
| ATGTAAGCAGCGAAATGGTT+AGG | - | chr1.4:7930284-7930303 | None:intergenic | 40.0% | |
| CAATTCACTGAATCAGTGCT+AGG | + | chr1.4:7929310-7929329 | MS.gene51538:intron | 40.0% | |
| CTTCCTATCTACCAAGCATT+TGG | + | chr1.4:7929421-7929440 | MS.gene51538:intron | 40.0% | |
| CTTGTCTAAACCTACTTCCT+TGG | + | chr1.4:7930040-7930059 | MS.gene51538:intron | 40.0% | |
| GAATTCTTAGTTGTCTGCCA+AGG | - | chr1.4:7930060-7930079 | None:intergenic | 40.0% | |
| GAGGAATTAAGGCAATTGGA+GGG | - | chr1.4:7930181-7930200 | None:intergenic | 40.0% | |
| GCATACAATACACCAAATGG+TGG | + | chr1.4:7930927-7930946 | MS.gene51538:intron | 40.0% | |
| GGACAGACTAGAGTAATTGT+AGG | + | chr1.4:7929719-7929738 | MS.gene51538:intron | 40.0% | |
| GTAATAACCATCTACTTGGG+TGG | + | chr1.4:7929230-7929249 | MS.gene51538:intron | 40.0% | |
| TAGAGCTACCAGAACTTTCA+TGG | + | chr1.4:7929177-7929196 | MS.gene51538:CDS | 40.0% | |
| TCAATGTGACTGAAAGGTCA+CGG | + | chr1.4:7930858-7930877 | MS.gene51538:intron | 40.0% | |
| ! | AAAGGCTTTTCTCACAAGGT+GGG | - | chr1.4:7929825-7929844 | None:intergenic | 40.0% |
| ! | ACAATTTTACCGTTGTGCCA+AGG | - | chr1.4:7930837-7930856 | None:intergenic | 40.0% |
| ! | AGTGAAAGGCTTTTCTCACA+AGG | - | chr1.4:7929829-7929848 | None:intergenic | 40.0% |
| ! | GCATATGTGGACTGTATGAA+AGG | + | chr1.4:7931076-7931095 | MS.gene51538:CDS | 40.0% |
| ! | TAAGAGATATTTCTGACGGC+TGG | - | chr1.4:7931120-7931139 | None:intergenic | 40.0% |
| ! | TGGTGTAGTTGATGCAAGTA+AGG | + | chr1.4:7929547-7929566 | MS.gene51538:intron | 40.0% |
| !!! | CAACTATGTGCTTGGTGTTT+TGG | + | chr1.4:7930522-7930541 | MS.gene51538:intron | 40.0% |
| !!! | TTGTGTTTATTTTGGCGAGC+AGG | + | chr1.4:7930559-7930578 | MS.gene51538:intron | 40.0% |
| AACAATACGTGCCTCTATCC+GGG | + | chr1.4:7930752-7930771 | MS.gene51538:intron | 45.0% | |
| ACAAAGAATAAAGGGCAGCC+CGG | - | chr1.4:7930994-7931013 | None:intergenic | 45.0% | |
| ACCATCGATAGCAAGAGAGA+TGG | - | chr1.4:7929212-7929231 | None:intergenic | 45.0% | |
| ACTTGGGAATCACACAGTCA+AGG | - | chr1.4:7929984-7930003 | None:intergenic | 45.0% | |
| AGGATGTAAATCCCGGATAG+AGG | - | chr1.4:7930766-7930785 | None:intergenic | 45.0% | |
| AGGGGGTTATACAGTAAGGT+TGG | - | chr1.4:7930162-7930181 | None:intergenic | 45.0% | |
| CAACAATACGTGCCTCTATC+CGG | + | chr1.4:7930751-7930770 | MS.gene51538:intron | 45.0% | |
| CAATGTGACTGAAAGGTCAC+GGG | + | chr1.4:7930859-7930878 | MS.gene51538:intron | 45.0% | |
| CAGGCTCTTGTGTGAAAACA+AGG | + | chr1.4:7930897-7930916 | MS.gene51538:intron | 45.0% | |
| CGTATTGTTGAGCACAATGG+CGG | - | chr1.4:7930741-7930760 | None:intergenic | 45.0% | |
| GCACCAAATGCTTGGTAGAT+AGG | - | chr1.4:7929427-7929446 | None:intergenic | 45.0% | |
| GCACGTATTGTTGAGCACAA+TGG | - | chr1.4:7930744-7930763 | None:intergenic | 45.0% | |
| GGAATTAAGGCAATTGGAGG+GGG | - | chr1.4:7930179-7930198 | None:intergenic | 45.0% | |
| GGAGGAATTAAGGCAATTGG+AGG | - | chr1.4:7930182-7930201 | None:intergenic | 45.0% | |
| TAGTTGTCTGCCAAGGAAGT+AGG | - | chr1.4:7930053-7930072 | None:intergenic | 45.0% | |
| TCACAATCCACCCAAGTAGA+TGG | - | chr1.4:7929240-7929259 | None:intergenic | 45.0% | |
| TGGATTGTGGAATTTGGCAG+AGG | + | chr1.4:7929515-7929534 | MS.gene51538:intron | 45.0% | |
| TTGGAGGGGGTTATACAGTA+AGG | - | chr1.4:7930166-7930185 | None:intergenic | 45.0% | |
| ! | AAGGCTTTTCTCACAAGGTG+GGG | - | chr1.4:7929824-7929843 | None:intergenic | 45.0% |
| ! | GAAAGGCTTTTCTCACAAGG+TGG | - | chr1.4:7929826-7929845 | None:intergenic | 45.0% |
| ! | GATACTTTCGCGAGGTGTTA+TGG | + | chr1.4:7930381-7930400 | MS.gene51538:intron | 45.0% |
| ! | TCCATCTCTCTTGCTATCGA+TGG | + | chr1.4:7929208-7929227 | MS.gene51538:CDS | 45.0% |
| !!! | TTAAAAAAAATCATTTTTAA+CGG | - | chr1.4:7929750-7929769 | None:intergenic | 5.0% |
| TCACACAAGAGCCTGTTTCC+AGG | - | chr1.4:7930892-7930911 | None:intergenic | 50.0% | |
| !! | ATTTTGGCGAGCAGGATCTG+TGG | + | chr1.4:7930567-7930586 | MS.gene51538:intron | 50.0% |
| AAGGTCACGGGTTCAAGTCC+TGG | + | chr1.4:7930871-7930890 | MS.gene51538:intron | 55.0% | |
| ACAAAAGCTCCCGCATACGC+AGG | - | chr1.4:7930968-7930987 | None:intergenic | 55.0% | |
| CAAAAGCTCCCGCATACGCA+GGG | - | chr1.4:7930967-7930986 | None:intergenic | 55.0% | |
| CGGGTTCAAGTCCTGGAAAC+AGG | + | chr1.4:7930878-7930897 | MS.gene51538:intron | 55.0% | |
| ! | ATGCGGGAGCTTTTGTGCAC+CGG | + | chr1.4:7930972-7930991 | MS.gene51538:intron | 55.0% |
| !!! | ATACTTTTAGGGGGGCGCCT+TGG | + | chr1.4:7930817-7930836 | MS.gene51538:intron | 55.0% |
| ! | CAAATGGTGGGACCCCTTCC+CGG | + | chr1.4:7930940-7930959 | MS.gene51538:intron | 60.0% |
| ! | TGCGGGAGCTTTTGTGCACC+GGG | + | chr1.4:7930973-7930992 | MS.gene51538:intron | 60.0% |
| CATACGCAGGGTCCGGGAAG+GGG | - | chr1.4:7930955-7930974 | None:intergenic | 65.0% | |
| CGGGAAGGGGTCCCACCATT+TGG | - | chr1.4:7930942-7930961 | None:intergenic | 65.0% | |
| CTTCCCGGACCCTGCGTATG+CGG | + | chr1.4:7930955-7930974 | MS.gene51538:intron | 65.0% | |
| GCATACGCAGGGTCCGGGAA+GGG | - | chr1.4:7930956-7930975 | None:intergenic | 65.0% | |
| TTCCCGGACCCTGCGTATGC+GGG | + | chr1.4:7930956-7930975 | MS.gene51538:intron | 65.0% | |
| CGCATACGCAGGGTCCGGGA+AGG | - | chr1.4:7930957-7930976 | None:intergenic | 70.0% | |
| CTCCCGCATACGCAGGGTCC+GGG | - | chr1.4:7930961-7930980 | None:intergenic | 70.0% | |
| GCTCCCGCATACGCAGGGTC+CGG | - | chr1.4:7930962-7930981 | None:intergenic | 70.0% | |
| !! | AGGGGGGCGCCTTGGCACAA+CGG | + | chr1.4:7930825-7930844 | MS.gene51538:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 7929130 | 7931196 | 7929130 | ID=MS.gene51538 |
| chr1.4 | mRNA | 7929130 | 7931196 | 7929130 | ID=MS.gene51538.t1;Parent=MS.gene51538 |
| chr1.4 | exon | 7929130 | 7929229 | 7929130 | ID=MS.gene51538.t1.exon1;Parent=MS.gene51538.t1 |
| chr1.4 | CDS | 7929130 | 7929229 | 7929130 | ID=cds.MS.gene51538.t1;Parent=MS.gene51538.t1 |
| chr1.4 | exon | 7931076 | 7931196 | 7931076 | ID=MS.gene51538.t1.exon2;Parent=MS.gene51538.t1 |
| chr1.4 | CDS | 7931076 | 7931196 | 7931076 | ID=cds.MS.gene51538.t1;Parent=MS.gene51538.t1 |
| Gene Sequence |
| Protein sequence |
