AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene51866


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene51866.t1 MTR_7g085670 97.491 279 7 0 3 281 50 328 0.0 563
MS.gene51866.t1 MTR_7g085670 97.740 177 4 0 3 179 50 226 8.87e-126 358
MS.gene51866.t1 MTR_4g007990 28.571 245 149 12 36 268 135 365 1.92e-17 81.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene51866.t1 AT3G03890 76.357 258 61 0 20 277 62 319 3.59e-148 418
MS.gene51866.t1 AT3G03890 75.000 244 61 0 20 263 62 305 6.54e-138 391
MS.gene51866.t1 AT1G51560 27.626 257 136 12 36 268 141 371 1.10e-17 82.4
MS.gene51866.t1 AT3G21140 29.084 251 140 11 36 268 137 367 1.50e-17 82.0

Find 66 sgRNAs with CRISPR-Local

Find 210 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACACAAATCGTACAACTTT+TGG 0.244472 7.4:+21748296 None:intergenic
TCCTAAATGTTCAGTGCTTT+TGG 0.253580 7.4:-21748742 MS.gene51866:CDS
GGCCATACGAGCTGCATATT+TGG 0.255255 7.4:-21748471 MS.gene51866:CDS
CTTTGCTGACATAATAGATT+TGG 0.270171 7.4:-21747258 MS.gene51866:CDS
CGAGACATCCCAATGCGTTT+TGG 0.271589 7.4:-21748448 MS.gene51866:CDS
GCCAAAAGCACTGAACATTT+AGG 0.293730 7.4:+21748741 None:intergenic
GGTGTTGCCACAGCTTTGTT+AGG 0.347039 7.4:-21748272 MS.gene51866:CDS
CGGTTATCCATCAGGATCTA+TGG 0.347934 7.4:-21749167 MS.gene51866:CDS
ATGAATCAGGTTGTTTCCTC+TGG 0.356396 7.4:-21750275 MS.gene51866:intron
TCAATTAATTCAAGCTCATC+AGG 0.370693 7.4:-21750222 MS.gene51866:intron
GGCTTGGAAAACTGAGCAAT+GGG 0.383757 7.4:+21747551 None:intergenic
GCCACAGCTTTGTTAGGATC+AGG 0.395641 7.4:-21748266 MS.gene51866:CDS
TCCTGAAGATAGGACTGATT+TGG 0.404816 7.4:-21748712 MS.gene51866:CDS
CAACTTGAGGCTTGGCAGCT+TGG 0.406436 7.4:+21746754 None:intergenic
ACAGTTCGAATTTCTTCAAC+TGG 0.411436 7.4:+21749784 None:intergenic
TCTTCGACTTCAGAGTTTAC+CGG 0.413103 7.4:-21747602 MS.gene51866:intron
TCGTCTAGGTTTCAATGTTA+AGG 0.415391 7.4:-21747234 MS.gene51866:intron
AAGTCGCTCACTGCTAATAT+AGG 0.415949 7.4:+21749115 None:intergenic
TGCTGATTTGTACTCATCTC+CGG 0.430709 7.4:+21747583 None:intergenic
TCTTACTTTCTATCTTCTGC+AGG 0.436757 7.4:+21746909 None:intergenic
TGGCTAGAGATCCTGAAGAT+AGG 0.437357 7.4:-21748722 MS.gene51866:CDS
GCAGCACTGGACCTCAGTTC+CGG 0.448145 7.4:-21747378 MS.gene51866:intron
AGGTACCTGAGTAGTGGATT+GGG 0.448889 7.4:+21750481 None:intergenic
TTATATTCAGGTACCTGAAA+AGG 0.458927 7.4:-21748501 MS.gene51866:intron
CTGTACTTTGCAGGACTTAG+CGG 0.469481 7.4:-21748769 MS.gene51866:intron
AAGTATGACGGTTATCCATC+AGG 0.473161 7.4:-21749175 MS.gene51866:CDS
CTCGTAATGAAGGTTGACTT+TGG 0.474484 7.4:-21748344 MS.gene51866:intron
GATTAATACCGCTACTGGCT+TGG 0.477699 7.4:+21747535 None:intergenic
AAAGTTACCCAAAACGCATT+GGG 0.484421 7.4:+21748440 None:intergenic
TTTCTATCTTCTGCAGGTCG+AGG 0.484803 7.4:+21746915 None:intergenic
GAGGTACCTGAGTAGTGGAT+TGG 0.486138 7.4:+21750480 None:intergenic
CGCCAAATATGCAGCTCGTA+TGG 0.487531 7.4:+21748469 None:intergenic
TTAGAGATTAATACCGCTAC+TGG 0.492574 7.4:+21747530 None:intergenic
CTAAAGCGATTGTGCAGCAC+TGG 0.493445 7.4:-21747391 MS.gene51866:CDS
TTGGTTCAATGCGTACAAAT+CGG 0.494738 7.4:+21748315 None:intergenic
CGACTTGGCAGTTCATTCAA+AGG 0.496656 7.4:-21749098 MS.gene51866:intron
TTCTATCTTCTGCAGGTCGA+GGG 0.497692 7.4:+21746916 None:intergenic
GACTTTGCATGTGATGCAAA+TGG 0.502893 7.4:-21749142 MS.gene51866:CDS
ACCAAATCAGTCCTATCTTC+AGG 0.507307 7.4:+21748711 None:intergenic
AAAAGTTACCCAAAACGCAT+TGG 0.512742 7.4:+21748439 None:intergenic
AAAGTTGTACGATTTGTGTC+AGG 0.512754 7.4:-21748293 MS.gene51866:CDS
AACAGAAACCTTCGAGAATG+TGG 0.529578 7.4:+21749732 None:intergenic
GTATCAATCAACTTGAGGCT+TGG 0.543974 7.4:+21746746 None:intergenic
TCTTCTGCAGGTCGAGGGAA+AGG 0.546658 7.4:+21746921 None:intergenic
TAGATGTATCAATCAACTTG+AGG 0.555292 7.4:+21746741 None:intergenic
ATAATAGATTTGGATCGTCT+AGG 0.558053 7.4:-21747248 MS.gene51866:CDS
GGTACCTGAAAAGGATAAAG+AGG 0.559008 7.4:-21748492 MS.gene51866:CDS
TGGCTTGGAAAACTGAGCAA+TGG 0.563411 7.4:+21747550 None:intergenic
TTCTTCCCAATCCACTACTC+AGG 0.566362 7.4:-21750486 MS.gene51866:intron
GTTCGAATTTCTTCAACTGG+TGG 0.572856 7.4:+21749787 None:intergenic
GACGCTCTCCACATTCTCGA+AGG 0.577675 7.4:-21749740 MS.gene51866:intron
TCCCACGTAGACTACGATCA+AGG 0.587187 7.4:+21749761 None:intergenic
AAATAGAGGTACCTGAGTAG+TGG 0.589705 7.4:+21750475 None:intergenic
CAGGTCGAGGGAAAGGCACA+CGG 0.592459 7.4:+21746928 None:intergenic
TATATTAGCAGTGAGCGACT+TGG 0.593728 7.4:-21749113 MS.gene51866:CDS
AAGTCAACCATAGATCCTGA+TGG 0.598237 7.4:+21749160 None:intergenic
ACAGCTTTGTTAGGATCAGG+AGG 0.602593 7.4:-21748263 MS.gene51866:intron
GTCCTTGATCGTAGTCTACG+TGG 0.607414 7.4:-21749763 MS.gene51866:CDS
TTTGACACGCAGAAGTATGA+CGG 0.611261 7.4:-21749187 MS.gene51866:intron
TCCTTGATCGTAGTCTACGT+GGG 0.641535 7.4:-21749762 MS.gene51866:CDS
AAGGGGACATACCGGAACTG+AGG 0.652484 7.4:+21747367 None:intergenic
TCCTGATCCTAACAAAGCTG+TGG 0.652822 7.4:+21748265 None:intergenic
TCGCACATGAACAAAGATCA+CGG 0.675086 7.4:-21747422 MS.gene51866:CDS
GATTTGGTGATCACTATCCA+CGG 0.676849 7.4:-21748696 MS.gene51866:CDS
GCTTGGAAAACTGAGCAATG+GGG 0.731088 7.4:+21747552 None:intergenic
TTACAAAGATAGCGTCACCG+TGG 0.762471 7.4:+21748679 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTAAACTGTAAATTATTA+TGG - chr7.4:21747658-21747677 MS.gene51866:intron 10.0%
!! ATTTGATAAATAATAGTAAA+AGG + chr7.4:21748653-21748672 None:intergenic 10.0%
!! CTATTGAATAATAATTAATT+GGG - chr7.4:21746832-21746851 MS.gene51866:intron 10.0%
!! TATATTAAAAGAGAAAATTT+GGG + chr7.4:21749786-21749805 None:intergenic 10.0%
!! TTATATTAAAAGAGAAAATT+TGG + chr7.4:21749787-21749806 None:intergenic 10.0%
!! AAGAAATAATGTATAACTAA+TGG + chr7.4:21748615-21748634 None:intergenic 15.0%
!! AATATTATCATGTAAACATA+GGG - chr7.4:21749130-21749149 MS.gene51866:CDS 15.0%
!! ACTATTATTTATCAAATGAT+TGG - chr7.4:21748656-21748675 MS.gene51866:intron 15.0%
!! CCAATTAATTATTATTCAAT+AGG + chr7.4:21746834-21746853 None:intergenic 15.0%
!! CCTATTGAATAATAATTAAT+TGG - chr7.4:21746831-21746850 MS.gene51866:intron 15.0%
!! TGCATAAAAAAGAATATATA+AGG - chr7.4:21749446-21749465 MS.gene51866:intron 15.0%
!!! TATTTATTGCTTTTCTTTTA+GGG - chr7.4:21750441-21750460 MS.gene51866:intron 15.0%
!!! TGAAATTTTGTTTTAGTAAT+TGG - chr7.4:21747996-21748015 MS.gene51866:intron 15.0%
!!! TTTTAGTTAAGTTTTGATTT+TGG + chr7.4:21749281-21749300 None:intergenic 15.0%
!!! TTTTTAACAATAAACTTTGA+GGG + chr7.4:21748203-21748222 None:intergenic 15.0%
!!! TTTTTTAACAATAAACTTTG+AGG + chr7.4:21748204-21748223 None:intergenic 15.0%
!! AAAAAAAAACAGCATATTGT+AGG + chr7.4:21750393-21750412 None:intergenic 20.0%
!! AATAGGTTCAAAGAAAAAAA+GGG + chr7.4:21746817-21746836 None:intergenic 20.0%
!! AATTGAATGTGTATAATTTC+AGG - chr7.4:21747383-21747402 MS.gene51866:CDS 20.0%
!! AATTTGTGAACTTGTATAAA+TGG - chr7.4:21748280-21748299 MS.gene51866:CDS 20.0%
!! ATAATAGAATCATTATACGA+AGG - chr7.4:21748695-21748714 MS.gene51866:CDS 20.0%
!! ATACACATGAAATTAACTTA+TGG + chr7.4:21749577-21749596 None:intergenic 20.0%
!! CAATATTATCATGTAAACAT+AGG - chr7.4:21749129-21749148 MS.gene51866:CDS 20.0%
!! TAATAGAATCATTATACGAA+GGG - chr7.4:21748696-21748715 MS.gene51866:CDS 20.0%
!! TAATTAATTAATGTGATTCG+TGG - chr7.4:21746945-21746964 MS.gene51866:CDS 20.0%
!! TTTAAAAATCACCTACAAAT+TGG - chr7.4:21750126-21750145 MS.gene51866:intron 20.0%
!!! AAGATTGATTTATGTTAATG+GGG - chr7.4:21747406-21747425 MS.gene51866:CDS 20.0%
!!! ATAATCATTTTTTTTTAGGC+TGG - chr7.4:21750271-21750290 MS.gene51866:intron 20.0%
!!! ATTTTATTCCACTCATAAAA+AGG + chr7.4:21749108-21749127 None:intergenic 20.0%
!!! CTATTTATTGCTTTTCTTTT+AGG - chr7.4:21750440-21750459 MS.gene51866:intron 20.0%
!!! GAAGATTGATTTATGTTAAT+GGG - chr7.4:21747405-21747424 MS.gene51866:CDS 20.0%
!!! TTTTATTCCACTCATAAAAA+GGG + chr7.4:21749107-21749126 None:intergenic 20.0%
! AAATAAAAGACAAGATGAGA+AGG + chr7.4:21748040-21748059 None:intergenic 25.0%
! AAATATCTTTCCATTACTTC+AGG - chr7.4:21749528-21749547 MS.gene51866:intron 25.0%
! AATAGAATCATTATACGAAG+GGG - chr7.4:21748697-21748716 MS.gene51866:CDS 25.0%
! ACTTCTACAAAAATCAATGA+AGG + chr7.4:21747180-21747199 None:intergenic 25.0%
! ATAGTCCTGAAATTATATTC+AGG - chr7.4:21748733-21748752 MS.gene51866:CDS 25.0%
! ATGTAAACTTCACATAAGAT+GGG + chr7.4:21747589-21747608 None:intergenic 25.0%
! ATTAAAAGAGAAAATTTGGG+TGG + chr7.4:21749783-21749802 None:intergenic 25.0%
! ATTAACTTATGGTTCATAGA+TGG + chr7.4:21749566-21749585 None:intergenic 25.0%
! ATTATAACTGTTAAGATGAC+CGG + chr7.4:21748391-21748410 None:intergenic 25.0%
! CAATAGGTTCAAAGAAAAAA+AGG + chr7.4:21746818-21746837 None:intergenic 25.0%
! CAGTGAAGATTTCAATTTAA+TGG + chr7.4:21747951-21747970 None:intergenic 25.0%
! GATTTCTTTATCCAATTTGT+AGG + chr7.4:21750140-21750159 None:intergenic 25.0%
! GTATATAGTATGATCAAGAA+AGG - chr7.4:21749914-21749933 MS.gene51866:intron 25.0%
! TAAGTAAAAATACTGCCTAA+AGG + chr7.4:21750094-21750113 None:intergenic 25.0%
! TCATACTATATACTGTACAA+CGG + chr7.4:21749907-21749926 None:intergenic 25.0%
!! AAGATTAGATTTGACTTCAT+CGG - chr7.4:21748244-21748263 MS.gene51866:intron 25.0%
!! GGAAGATTGATTTATGTTAA+TGG - chr7.4:21747404-21747423 MS.gene51866:CDS 25.0%
!! TTTAGTTGTTGTTGTTCATA+GGG + chr7.4:21747879-21747898 None:intergenic 25.0%
!! TTTTCAGAAAAGTTCATGTT+AGG + chr7.4:21749237-21749256 None:intergenic 25.0%
!!! GCAATCTTTTAATTTGTTTG+TGG + chr7.4:21748434-21748453 None:intergenic 25.0%
!!! TTTATTTTTAACATCACCAG+AGG + chr7.4:21746990-21747009 None:intergenic 25.0%
!!! TTTTAGTTGTTGTTGTTCAT+AGG + chr7.4:21747880-21747899 None:intergenic 25.0%
AAAAATACTGCCTAAAGGTA+TGG + chr7.4:21750089-21750108 None:intergenic 30.0%
AAATGAACTACTCGTAATGA+AGG - chr7.4:21748892-21748911 MS.gene51866:intron 30.0%
AAGGGAAATGTTTCATACTA+TGG + chr7.4:21749089-21749108 None:intergenic 30.0%
AGAAAAGTTCATGTTAGGAA+AGG + chr7.4:21749232-21749251 None:intergenic 30.0%
AGCTATACAAATCAGTGTAA+GGG + chr7.4:21747547-21747566 None:intergenic 30.0%
AGGTACCTGAATATAATTTC+AGG + chr7.4:21748741-21748760 None:intergenic 30.0%
AGTTTATTTGCCATACCTTT+AGG - chr7.4:21750076-21750095 MS.gene51866:intron 30.0%
ATAATAGATTTGGATCGTCT+AGG - chr7.4:21749998-21750017 MS.gene51866:intron 30.0%
ATCAAGAAATCAACAGCTTT+AGG + chr7.4:21749323-21749342 None:intergenic 30.0%
CATACTATATACTGTACAAC+GGG + chr7.4:21749906-21749925 None:intergenic 30.0%
CATGTAAACTTCACATAAGA+TGG + chr7.4:21747590-21747609 None:intergenic 30.0%
CTAAATTGACAGAAGCTAAT+GGG + chr7.4:21747219-21747238 None:intergenic 30.0%
CTTTGAACATTACAAATGCT+GGG - chr7.4:21747753-21747772 MS.gene51866:intron 30.0%
CTTTGCTGACATAATAGATT+TGG - chr7.4:21749988-21750007 MS.gene51866:intron 30.0%
TCAAGAAATCAACAGCTTTA+GGG + chr7.4:21749322-21749341 None:intergenic 30.0%
TCAATTAATTCAAGCTCATC+AGG - chr7.4:21747024-21747043 MS.gene51866:intron 30.0%
TCTTTGAACATTACAAATGC+TGG - chr7.4:21747752-21747771 MS.gene51866:intron 30.0%
TGTAAACTTCACATAAGATG+GGG + chr7.4:21747588-21747607 None:intergenic 30.0%
TTATAACTGTTAAGATGACC+GGG + chr7.4:21748390-21748409 None:intergenic 30.0%
TTATATTCAGGTACCTGAAA+AGG - chr7.4:21748745-21748764 MS.gene51866:CDS 30.0%
TTATGTTAATGGGGTTATTG+TGG - chr7.4:21747415-21747434 MS.gene51866:CDS 30.0%
! AACATTTCCCTTTTTATGAG+TGG - chr7.4:21749097-21749116 MS.gene51866:intron 30.0%
! CAATTTTAAACTACCAGCAA+GGG + chr7.4:21747368-21747387 None:intergenic 30.0%
! CATTATAGTTGATACCTTGA+AGG - chr7.4:21749160-21749179 MS.gene51866:CDS 30.0%
! TATTGTTTTCTGTACTTTGC+AGG - chr7.4:21748468-21748487 MS.gene51866:CDS 30.0%
! TCAATTTTAAACTACCAGCA+AGG + chr7.4:21747369-21747388 None:intergenic 30.0%
! TGTAAATTATTATGGTGCCA+TGG - chr7.4:21747666-21747685 MS.gene51866:intron 30.0%
!! GTTAATTTGCTGTTAATGCT+GGG - chr7.4:21749031-21749050 MS.gene51866:intron 30.0%
!! TGAAAACTGTACTTGTTATC+TGG - chr7.4:21749410-21749429 MS.gene51866:intron 30.0%
!!! TGGGGATATTGAAGTTTTTT+TGG - chr7.4:21747797-21747816 MS.gene51866:intron 30.0%
!!! TTTTTTTAGGCTGGTTATCA+GGG - chr7.4:21750280-21750299 MS.gene51866:intron 30.0%
!!! TTTTTTTTAGGCTGGTTATC+AGG - chr7.4:21750279-21750298 MS.gene51866:intron 30.0%
AAAAGTTACCCAAAACGCAT+TGG + chr7.4:21748810-21748829 None:intergenic 35.0%
AAAGTTACCCAAAACGCATT+GGG + chr7.4:21748809-21748828 None:intergenic 35.0%
AAAGTTGTACGATTTGTGTC+AGG - chr7.4:21748953-21748972 MS.gene51866:intron 35.0%
AATATGGCTGTTAACTTTCC+TGG - chr7.4:21747693-21747712 MS.gene51866:intron 35.0%
ACAGTTCGAATTTCTTCAAC+TGG + chr7.4:21747465-21747484 None:intergenic 35.0%
AGAGAAGAGTGAAGAAATAG+AGG + chr7.4:21746788-21746807 None:intergenic 35.0%
ATACAAATCAGTGTAAGGGT+AGG + chr7.4:21747543-21747562 None:intergenic 35.0%
ATTAACCAACAAGAGTAGTG+AGG + chr7.4:21749017-21749036 None:intergenic 35.0%
CAGAGAGGTGAATTACAAAA+TGG + chr7.4:21747059-21747078 None:intergenic 35.0%
CAGCTATACAAATCAGTGTA+AGG + chr7.4:21747548-21747567 None:intergenic 35.0%
CATGCAGTATATGATCAGAA+AGG + chr7.4:21747978-21747997 None:intergenic 35.0%
CCTAAATTGACAGAAGCTAA+TGG + chr7.4:21747220-21747239 None:intergenic 35.0%
TAAAAGACAAGATGAGAAGG+AGG + chr7.4:21748037-21748056 None:intergenic 35.0%
TCGTCTAGGTTTCAATGTTA+AGG - chr7.4:21750012-21750031 MS.gene51866:intron 35.0%
TCTTACTTTCTATCTTCTGC+AGG + chr7.4:21750340-21750359 None:intergenic 35.0%
TGATTCGTGGTTTATGAATC+AGG - chr7.4:21746958-21746977 MS.gene51866:CDS 35.0%
TGGGATTGATCAAATAAGAG+AGG - chr7.4:21747772-21747791 MS.gene51866:intron 35.0%
TGTTAATGCTGGGATATGTT+TGG - chr7.4:21749041-21749060 MS.gene51866:intron 35.0%
TTAGAGATTAATACCGCTAC+TGG + chr7.4:21749719-21749738 None:intergenic 35.0%
TTCACATAAGATGGGGAAAA+AGG + chr7.4:21747581-21747600 None:intergenic 35.0%
TTGATCAAATAAGAGAGGCA+TGG - chr7.4:21747777-21747796 MS.gene51866:intron 35.0%
TTGGTTCAATGCGTACAAAT+CGG + chr7.4:21748934-21748953 None:intergenic 35.0%
! AAAACAAACTCTAGCCTTCA+AGG + chr7.4:21749177-21749196 None:intergenic 35.0%
! CATTTTGTAATTCACCTCTC+TGG - chr7.4:21747057-21747076 MS.gene51866:intron 35.0%
! CCATTAGCTTCTGTCAATTT+AGG - chr7.4:21747217-21747236 MS.gene51866:intron 35.0%
! GACACAAATCGTACAACTTT+TGG + chr7.4:21748953-21748972 None:intergenic 35.0%
! GATTTGACTTCATCGGAAAT+AGG - chr7.4:21748251-21748270 MS.gene51866:intron 35.0%
! TCCTAAATGTTCAGTGCTTT+TGG - chr7.4:21748504-21748523 MS.gene51866:intron 35.0%
! TGATCAAATAAGAGAGGCAT+GGG - chr7.4:21747778-21747797 MS.gene51866:intron 35.0%
! TTGTTGTTGTTCATAGGGAA+GGG + chr7.4:21747874-21747893 None:intergenic 35.0%
!! AAATTATTATGGTGCCATGG+TGG - chr7.4:21747669-21747688 MS.gene51866:intron 35.0%
!! ACTTATCTAGAAGCACTTCT+GGG - chr7.4:21747084-21747103 MS.gene51866:intron 35.0%
!! GGTTAATTTGCTGTTAATGC+TGG - chr7.4:21749030-21749049 MS.gene51866:intron 35.0%
!! TATTGACTTAGGCTTGTCAA+AGG - chr7.4:21748318-21748337 MS.gene51866:CDS 35.0%
AACAGAAACCTTCGAGAATG+TGG + chr7.4:21747517-21747536 None:intergenic 40.0%
AAGTATGACGGTTATCCATC+AGG - chr7.4:21748071-21748090 MS.gene51866:intron 40.0%
AAGTCAACCATAGATCCTGA+TGG + chr7.4:21748089-21748108 None:intergenic 40.0%
AAGTCGCTCACTGCTAATAT+AGG + chr7.4:21748134-21748153 None:intergenic 40.0%
AATGCTGGGATATGTTTGGA+AGG - chr7.4:21749045-21749064 MS.gene51866:intron 40.0%
ACCAAATCAGTCCTATCTTC+AGG + chr7.4:21748538-21748557 None:intergenic 40.0%
ATATACTGTACAACGGGCAA+GGG + chr7.4:21749900-21749919 None:intergenic 40.0%
ATGCTGGGATATGTTTGGAA+GGG - chr7.4:21749046-21749065 MS.gene51866:intron 40.0%
CCTAAGTCAATACTGTGTGA+TGG + chr7.4:21748310-21748329 None:intergenic 40.0%
CTTGCTCATTCCTGAAGTAA+TGG + chr7.4:21749541-21749560 None:intergenic 40.0%
GACTTTGCATGTGATGCAAA+TGG - chr7.4:21748104-21748123 MS.gene51866:intron 40.0%
GGTACCTGAAAAGGATAAAG+AGG - chr7.4:21748754-21748773 MS.gene51866:CDS 40.0%
GTTAACCTCACTACTCTTGT+TGG - chr7.4:21749009-21749028 MS.gene51866:intron 40.0%
GTTCGAATTTCTTCAACTGG+TGG + chr7.4:21747462-21747481 None:intergenic 40.0%
TAGAAGCTAAAATCCCTTGC+TGG - chr7.4:21747352-21747371 MS.gene51866:intron 40.0%
TATATACTGTACAACGGGCA+AGG + chr7.4:21749901-21749920 None:intergenic 40.0%
TATATTAGCAGTGAGCGACT+TGG - chr7.4:21748133-21748152 MS.gene51866:intron 40.0%
TCCTGAAGATAGGACTGATT+TGG - chr7.4:21748534-21748553 MS.gene51866:intron 40.0%
TCGCACATGAACAAAGATCA+CGG - chr7.4:21749824-21749843 MS.gene51866:intron 40.0%
TCTTCGACTTCAGAGTTTAC+CGG - chr7.4:21749644-21749663 MS.gene51866:intron 40.0%
TGACTGAATTGATCATCTGC+AGG - chr7.4:21749961-21749980 MS.gene51866:intron 40.0%
! AGTCAATACTGTGTGATGGA+TGG + chr7.4:21748306-21748325 None:intergenic 40.0%
! ATGAATCAGGTTGTTTCCTC+TGG - chr7.4:21746971-21746990 MS.gene51866:intron 40.0%
! ATGGCCTCTTTATCCTTTTC+AGG + chr7.4:21748761-21748780 None:intergenic 40.0%
! CTCGTAATGAAGGTTGACTT+TGG - chr7.4:21748902-21748921 MS.gene51866:intron 40.0%
! GATCAAATAAGAGAGGCATG+GGG - chr7.4:21747779-21747798 MS.gene51866:intron 40.0%
! GTTGTTGTTGTTCATAGGGA+AGG + chr7.4:21747875-21747894 None:intergenic 40.0%
! TGACTTTTGTTCATACCCCA+AGG - chr7.4:21747837-21747856 MS.gene51866:intron 40.0%
! TTTGACACGCAGAAGTATGA+CGG - chr7.4:21748059-21748078 MS.gene51866:intron 40.0%
!! AAATAGAGGTACCTGAGTAG+TGG + chr7.4:21746774-21746793 None:intergenic 40.0%
!! AAGGGTGTTTACAGTTCCTT+GGG + chr7.4:21747856-21747875 None:intergenic 40.0%
!! AGCTGTTGATTTCTTGATGC+TGG - chr7.4:21749325-21749344 MS.gene51866:intron 40.0%
!! CACTTATCTAGAAGCACTTC+TGG - chr7.4:21747083-21747102 MS.gene51866:intron 40.0%
!! CCATCACACAGTATTGACTT+AGG - chr7.4:21748307-21748326 MS.gene51866:CDS 40.0%
!! GATTTGGTGATCACTATCCA+CGG - chr7.4:21748550-21748569 MS.gene51866:intron 40.0%
!! GCCAAAAGCACTGAACATTT+AGG + chr7.4:21748508-21748527 None:intergenic 40.0%
!! TGCTGATTTGTACTCATCTC+CGG + chr7.4:21749666-21749685 None:intergenic 40.0%
!!! GAAGGCTAGAGTTTGTTTTG+CGG - chr7.4:21749178-21749197 MS.gene51866:CDS 40.0%
CGGTTATCCATCAGGATCTA+TGG - chr7.4:21748079-21748098 MS.gene51866:intron 45.0%
CTAGATAAGTGCTTCCAGAG+AGG + chr7.4:21747074-21747093 None:intergenic 45.0%
CTGAATTGATCATCTGCAGG+TGG - chr7.4:21749964-21749983 MS.gene51866:intron 45.0%
CTGTACTTTGCAGGACTTAG+CGG - chr7.4:21748477-21748496 MS.gene51866:CDS 45.0%
GCTTGGAAAACTGAGCAATG+GGG + chr7.4:21749697-21749716 None:intergenic 45.0%
GGCTTGGAAAACTGAGCAAT+GGG + chr7.4:21749698-21749717 None:intergenic 45.0%
GTTAATGGGGTTATTGTGGC+AGG - chr7.4:21747419-21747438 MS.gene51866:CDS 45.0%
TAACAGCCATATTGCCACCA+TGG + chr7.4:21747686-21747705 None:intergenic 45.0%
TATACTGTACAACGGGCAAG+GGG + chr7.4:21749899-21749918 None:intergenic 45.0%
TCCTGATCCTAACAAAGCTG+TGG + chr7.4:21748984-21749003 None:intergenic 45.0%
TCCTTGATCGTAGTCTACGT+GGG - chr7.4:21747484-21747503 MS.gene51866:intron 45.0%
TGGCTAGAGATCCTGAAGAT+AGG - chr7.4:21748524-21748543 MS.gene51866:intron 45.0%
TTACAAAGATAGCGTCACCG+TGG + chr7.4:21748570-21748589 None:intergenic 45.0%
TTCTATCTTCTGCAGGTCGA+GGG + chr7.4:21750333-21750352 None:intergenic 45.0%
TTCTTCCCAATCCACTACTC+AGG - chr7.4:21746760-21746779 MS.gene51866:CDS 45.0%
TTGATTTCTTGATGCTGGCG+TGG - chr7.4:21749330-21749349 MS.gene51866:intron 45.0%
TTTCTATCTTCTGCAGGTCG+AGG + chr7.4:21750334-21750353 None:intergenic 45.0%
! AGGGTGTTTACAGTTCCTTG+GGG + chr7.4:21747855-21747874 None:intergenic 45.0%
! CGACTTGGCAGTTCATTCAA+AGG - chr7.4:21748148-21748167 MS.gene51866:intron 45.0%
! GAGACATCCCAATGCGTTTT+GGG - chr7.4:21748799-21748818 MS.gene51866:intron 45.0%
! GATTAATACCGCTACTGGCT+TGG + chr7.4:21749714-21749733 None:intergenic 45.0%
! TCAGTTTTCCAAGCCAGTAG+CGG - chr7.4:21749703-21749722 MS.gene51866:intron 45.0%
! TGGCTTGGAAAACTGAGCAA+TGG + chr7.4:21749699-21749718 None:intergenic 45.0%
!! ACAGCTTTGTTAGGATCAGG+AGG - chr7.4:21748983-21749002 MS.gene51866:intron 45.0%
!! AGGTACCTGAGTAGTGGATT+GGG + chr7.4:21746768-21746787 None:intergenic 45.0%
!! GAAGGGTGTTTACAGTTCCT+TGG + chr7.4:21747857-21747876 None:intergenic 45.0%
!!! TAAAATAATCATTTTTTTTT+AGG - chr7.4:21750267-21750286 MS.gene51866:CDS 5.0%
!!! TCAATTAAAATATTTTTTAT+TGG - chr7.4:21749496-21749515 MS.gene51866:intron 5.0%
AGTGAAAGCTACTCCAGACC+AGG + chr7.4:21747714-21747733 None:intergenic 50.0%
CGCCAAATATGCAGCTCGTA+TGG + chr7.4:21748780-21748799 None:intergenic 50.0%
CTAAAGCGATTGTGCAGCAC+TGG - chr7.4:21749855-21749874 MS.gene51866:intron 50.0%
CTGTGTGGATGCTGTAAAGC+AGG - chr7.4:21749201-21749220 MS.gene51866:intron 50.0%
GGCCATACGAGCTGCATATT+TGG - chr7.4:21748775-21748794 MS.gene51866:intron 50.0%
GGCTGTTAACTTTCCTGGTC+TGG - chr7.4:21747698-21747717 MS.gene51866:intron 50.0%
GTCCTTGATCGTAGTCTACG+TGG - chr7.4:21747483-21747502 MS.gene51866:intron 50.0%
TCATGTCTTCAACCTGCTCC+CGG - chr7.4:21748369-21748388 MS.gene51866:intron 50.0%
TCCCACGTAGACTACGATCA+AGG + chr7.4:21747488-21747507 None:intergenic 50.0%
! CGAGACATCCCAATGCGTTT+TGG - chr7.4:21748798-21748817 MS.gene51866:intron 50.0%
! GGTCTGGAGTAGCTTTCACT+AGG - chr7.4:21747714-21747733 MS.gene51866:intron 50.0%
!! ATGGTGCCATGGTGGCAATA+TGG - chr7.4:21747677-21747696 MS.gene51866:intron 50.0%
!! GAGGTACCTGAGTAGTGGAT+TGG + chr7.4:21746769-21746788 None:intergenic 50.0%
!! GCCACAGCTTTGTTAGGATC+AGG - chr7.4:21748980-21748999 MS.gene51866:intron 50.0%
!! GGTGTTGCCACAGCTTTGTT+AGG - chr7.4:21748974-21748993 MS.gene51866:intron 50.0%
!!! GAGTTTGTTTTGCGGCTGTG+TGG - chr7.4:21749186-21749205 MS.gene51866:intron 50.0%
AAGGGGACATACCGGAACTG+AGG + chr7.4:21749882-21749901 None:intergenic 55.0%
CAACTTGAGGCTTGGCAGCT+TGG + chr7.4:21750495-21750514 None:intergenic 55.0%
CTGTTAAGATGACCGGGAGC+AGG + chr7.4:21748384-21748403 None:intergenic 55.0%
GACGCTCTCCACATTCTCGA+AGG - chr7.4:21747506-21747525 MS.gene51866:intron 55.0%
TCTTCTGCAGGTCGAGGGAA+AGG + chr7.4:21750328-21750347 None:intergenic 55.0%
CAACGGGCAAGGGGACATAC+CGG + chr7.4:21749890-21749909 None:intergenic 60.0%
! CAGGTCGAGGGAAAGGCACA+CGG + chr7.4:21750321-21750340 None:intergenic 60.0%
! GCAGCACTGGACCTCAGTTC+CGG - chr7.4:21749868-21749887 MS.gene51866:intron 60.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 21746749 21750519 21746749 ID=MS.gene51866
chr7.4 mRNA 21746749 21750519 21746749 ID=MS.gene51866.t1;Parent=MS.gene51866
chr7.4 exon 21750487 21750519 21750487 ID=MS.gene51866.t1.exon1;Parent=MS.gene51866.t1
chr7.4 CDS 21750487 21750519 21750487 ID=cds.MS.gene51866.t1;Parent=MS.gene51866.t1
chr7.4 exon 21750223 21750288 21750223 ID=MS.gene51866.t1.exon2;Parent=MS.gene51866.t1
chr7.4 CDS 21750223 21750288 21750223 ID=cds.MS.gene51866.t1;Parent=MS.gene51866.t1
chr7.4 exon 21749741 21749827 21749741 ID=MS.gene51866.t1.exon3;Parent=MS.gene51866.t1
chr7.4 CDS 21749741 21749827 21749741 ID=cds.MS.gene51866.t1;Parent=MS.gene51866.t1
chr7.4 exon 21749099 21749197 21749099 ID=MS.gene51866.t1.exon4;Parent=MS.gene51866.t1
chr7.4 CDS 21749099 21749197 21749099 ID=cds.MS.gene51866.t1;Parent=MS.gene51866.t1
chr7.4 exon 21748683 21748778 21748683 ID=MS.gene51866.t1.exon5;Parent=MS.gene51866.t1
chr7.4 CDS 21748683 21748778 21748683 ID=cds.MS.gene51866.t1;Parent=MS.gene51866.t1
chr7.4 exon 21748448 21748513 21748448 ID=MS.gene51866.t1.exon6;Parent=MS.gene51866.t1
chr7.4 CDS 21748448 21748513 21748448 ID=cds.MS.gene51866.t1;Parent=MS.gene51866.t1
chr7.4 exon 21748264 21748354 21748264 ID=MS.gene51866.t1.exon7;Parent=MS.gene51866.t1
chr7.4 CDS 21748264 21748354 21748264 ID=cds.MS.gene51866.t1;Parent=MS.gene51866.t1
chr7.4 exon 21747544 21747611 21747544 ID=MS.gene51866.t1.exon8;Parent=MS.gene51866.t1
chr7.4 CDS 21747544 21747611 21747544 ID=cds.MS.gene51866.t1;Parent=MS.gene51866.t1
chr7.4 exon 21747379 21747444 21747379 ID=MS.gene51866.t1.exon9;Parent=MS.gene51866.t1
chr7.4 CDS 21747379 21747444 21747379 ID=cds.MS.gene51866.t1;Parent=MS.gene51866.t1
chr7.4 exon 21747235 21747285 21747235 ID=MS.gene51866.t1.exon10;Parent=MS.gene51866.t1
chr7.4 CDS 21747235 21747285 21747235 ID=cds.MS.gene51866.t1;Parent=MS.gene51866.t1
chr7.4 exon 21746915 21746979 21746915 ID=MS.gene51866.t1.exon11;Parent=MS.gene51866.t1
chr7.4 CDS 21746915 21746979 21746915 ID=cds.MS.gene51866.t1;Parent=MS.gene51866.t1
chr7.4 exon 21746749 21746806 21746749 ID=MS.gene51866.t1.exon12;Parent=MS.gene51866.t1
chr7.4 CDS 21746749 21746806 21746749 ID=cds.MS.gene51866.t1;Parent=MS.gene51866.t1
Gene Sequence

>MS.gene51866

ATGGCTTCTTCTTCTTCCCAATCCACTACTCAGGTACCTCTATTTCTTCACTCTTCTCTTTTTTACCCTTTTTTTCTTTGAACCTATTGAATAATAATTAATTGGGTCGCTTCAAAATTCGAAATTTACACATAATTACTGAATTTTATTACATATTTTGTATGTTTTCAATGATGATCATAGTTTATGAATTAATTAATTAATTAATGTGATTCGTGGTTTATGAATCAGGTTGTTTCCTCTGGTGATGTTAAAAATAAAAAAGATGATGTCTTTCAATTAATTCAAGCTCATCAGGTATTTTAAGCCATTTTGTAATTCACCTCTCTGGAAGCACTTATCTAGAAGCACTTCTGGGAAACAAATTATTAGATGAAATGAAGAATTAAAAGCTGAAAACTTCTAGTATATGTTTAATTGCAAGTCAACCTTCATTGATTTTTGTAGAAGTTCTCATATTTAAATTTCCCATTAGCTTCTGTCAATTTAGGAGCTGTATTTTCATGATCTCATCATTTAACATCTATGAATGTCTATATGTTCATAAACAAAATTATGCAAGCGAAAATTGAAACTTATTTTAGTTGTAAAACTCTAATAAACTAGAAGCTAAAATCCCTTGCTGGTAGTTTAAAATTGAATGTGTATAATTTCAGGAAGATTGATTTATGTTAATGGGGTTATTGTGGCAGGAAAAAGCTGCAAGACTTCCACCAGTTGAAGAAATTCGAACTGTCCTTGATCGTAGTCTACGTGGGACGCTCTCCACATTCTCGAAGGTTTCTGTTTGTCCTACCCTTACACTGATTTGTATAGCTGATTGCTTTTACCTTTTTCCCCATCTTATGTGAAGTTTACATGATTATTGTTAAGTGTAATTCATGAGATGCAATCATCTTTTTTGCTTTAATTTAAACTGTAAATTATTATGGTGCCATGGTGGCAATATGGCTGTTAACTTTCCTGGTCTGGAGTAGCTTTCACTAGGAAAAAGATGAAAACATCTTTGAACATTACAAATGCTGGGATTGATCAAATAAGAGAGGCATGGGGATATTGAAGTTTTTTTGGTTTGAAAGTTTAGTTGTTGACTTTTGTTCATACCCCAAGGAACTGTAAACACCCTTCCCTATGAACAACAACAACTAAAAACAAAATAGTAATAGTACTAATAATAGTAAAATTCATGCTTGACAGAGCCATTAAATTGAAATCTTCACTGACTGCCTTTCTGATCATATACTGCATGAAATTTTGTTTTAGTAATTGGCAGACAACTTGATTGCCTCCTTCTCATCTTGTCTTTTATTTTTGACACGCAGAAGTATGACGGTTATCCATCAGGATCTATGGTTGACTTTGCATGTGATGCAAATGGATGTCCTATATTAGCAGTGAGCGACTTGGCAGTTCATTCAAAGGTTTCTTTCTTTATTTTATTTTATTTTCTTCCCTCAAAGTTTATTGTTAAAAAATGATAAATATAAAAAACTCAAAGATTAGATTTGACTTCATCGGAAATAGGACGTCGAATTTGTGAACTTGTATAAATGGCCATCCATCACACAGTATTGACTTAGGCTTGTCAAAGGTCTCGAATTAAATTTCAAATCTTATTTTTCATGTCTTCAACCTGCTCCCGGTCATCTTAACAGTTATAATTCATGAGAACATCTTTTAGACCACAAACAAATTAAAAGATTGCTTCTATTGCTAGAGTATTGTTTTCTGTACTTTGCAGGACTTAGCGGCTAATCCTAAATGTTCAGTGCTTTTGGCTAGAGATCCTGAAGATAGGACTGATTTGGTGATCACTATCCACGGTGACGCTATCTTTGTAAGTTACAGTCATCTGTTCATTTTCCATTAGTTATACATTATTTCTTTTTGTGTTTTCATTTCCTTTTACTATTATTTATCAAATGATTGGATTACACAGTCATTAAATAATAGAATCATTATACGAAGGGGCAGAAGTTTAAATATAGTCCTGAAATTATATTCAGGTACCTGAAAAGGATAAAGAGGCCATACGAGCTGCATATTTGGCGAGACATCCCAATGCGTTTTGGGTAACTTTTGCTCATCATTCTTCTTTGAAACTTACTTTGTGACTTCTGCTTGTTCTAAAATTAACAACTATAAATGAACTACTCGTAATGAAGGTTGACTTTGGAGACTTCCGATTTGTACGCATTGAACCAAAAGTTGTACGATTTGTGTCAGGTGTTGCCACAGCTTTGTTAGGATCAGGAGGTTTGTTAACCTCACTACTCTTGTTGGTTAATTTGCTGTTAATGCTGGGATATGTTTGGAAGGGAAGAGACAGTTAACTTTCCATAGTATGAAACATTTCCCTTTTTATGAGTGGAATAAAATACAATATTATCATGTAAACATAGGGTTAGAAACATTATAGTTGATACCTTGAAGGCTAGAGTTTGTTTTGCGGCTGTGTGGATGCTGTAAAGCAGGACAAACCTTTCCTAACATGAACTTTTCTGAAAATGAGCAAAGAGTGTATCAACGCCAAAATCAAAACTTAACTAAAATAATGAGATTAATTTTTGCCCTAAAGCTGTTGATTTCTTGATGCTGGCGTGGTGTGTTCTGCATCATATTGCATTATTAAAAACTGTCTTTTAAGTCAATTGCTTTGATTGAAAACTGTACTTGTTATCTGGTTTTAGAATAGCATGCATAAAAAAGAATATATAAGGAATTCTTGCATTTTAAAGAGAATTTTTTCAATTAAAATATTTTTTATTGGTGCACATCAAAATATCTTTCCATTACTTCAGGAATGAGCAAGTACCATCTATGAACCATAAGTTAATTTCATGTGTATTTTCTGTTTTATCTATTTGATACAAGTATATTTTGCTTACTTTTTTGTCTTCGACTTCAGAGTTTACCGGAGATGAGTACAAATCAGCAAAAGTTGACCCCATTGCTCAGTTTTCCAAGCCAGTAGCGGTATTAATCTCTAACTGATTTTCATATGTTGCATGTCTACAATGTATTTCTTAAACCACCCAAATTTTCTCTTTTAATATAAGTATTTTTATTTGACAGTCGCACATGAACAAAGATCACGGTGAAGATACTAAAGCGATTGTGCAGCACTGGACCTCAGTTCCGGTATGTCCCCTTGCCCGTTGTACAGTATATAGTATGATCAAGAAAGGCGACTCTTATTTCAACTGTTAAATTGACTGAATTGATCATCTGCAGGTGGACTTTGCTGACATAATAGATTTGGATCGTCTAGGTTTCAATGTTAAGGTATTGTTGTTCTTAGTTTTTCTAATATCATTTAGTTAAGCTAGTTTATTTGCCATACCTTTAGGCAGTATTTTTACTTATTTATTTATTTTTTTAAAAATCACCTACAAATTGGATAAAGAAATCTTCAATAACATCAGTCGAATAATATTTTCTACTTTGTTTGCAGTTATGCTCAATGTTCAATTTCTCTTTTACTATTTTTTCTGAGTTCTGAATGTGTACGTTTCATTTAAAATAATCATTTTTTTTTAGGCTGGTTATCAGGGAGATAAATTCAAGCTCCGTGTGCCTTTCCCTCGACCTGCAGAAGATAGAAAGTAAGACATCATATTTGATATAAGCTGTGTGTACGTCCTACAATATGCTGTTTTTTTTTAATAAAAAAAATTATGCTGATAAATAACTATTTATTGCTTTTCTTTTAGGGATGTTAAGACTCTCATTGTTGAGATGCTCCAAGCTGCCAAGCCTCAAGTTGATTGA

Protein sequence

>MS.gene51866.t1

MASSSSQSTTQVVSSGDVKNKKDDVFQLIQAHQEKAARLPPVEEIRTVLDRSLRGTLSTFSKKYDGYPSGSMVDFACDANGCPILAVSDLAVHSKDLAANPKCSVLLARDPEDRTDLVITIHGDAIFVPEKDKEAIRAAYLARHPNAFWVDFGDFRFVRIEPKVVRFVSGVATALLGSGEFTGDEYKSAKVDPIAQFSKPVASHMNKDHGEDTKAIVQHWTSVPVDFADIIDLDRLGFNVKAGYQGDKFKLRVPFPRPAEDRKDVKTLIVEMLQAAKPQVD