Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene51866.t1 | XP_013449504.1 | 97.5 | 279 | 7 | 0 | 3 | 281 | 50 | 328 | 1.10E-152 | 549.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene51866.t1 | Q9LU39 | 25.4 | 244 | 154 | 8 | 41 | 276 | 61 | 284 | 1.7e-10 | 68.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene51866.t1 | A0A072U1J2 | 97.5 | 279 | 7 | 0 | 3 | 281 | 50 | 328 | 7.6e-153 | 549.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049609 | MS.gene51866 | 0.807774 | 4.29E-50 | -1.69E-46 |
MS.gene050170 | MS.gene51866 | 0.803706 | 3.07E-49 | -1.69E-46 |
MS.gene050553 | MS.gene51866 | 0.800365 | 1.49E-48 | -1.69E-46 |
MS.gene050747 | MS.gene51866 | 0.846637 | 1.92E-59 | -1.69E-46 |
MS.gene050950 | MS.gene51866 | 0.842405 | 2.64E-58 | -1.69E-46 |
MS.gene051438 | MS.gene51866 | 0.803149 | 4.00E-49 | -1.69E-46 |
MS.gene051838 | MS.gene51866 | 0.863129 | 3.10E-64 | -1.69E-46 |
MS.gene052346 | MS.gene51866 | 0.812512 | 4.08E-51 | -1.69E-46 |
MS.gene052414 | MS.gene51866 | 0.807284 | 5.45E-50 | -1.69E-46 |
MS.gene052982 | MS.gene51866 | 0.834752 | 2.50E-56 | -1.69E-46 |
MS.gene053203 | MS.gene51866 | 0.800573 | 1.35E-48 | -1.69E-46 |
MS.gene053207 | MS.gene51866 | 0.802444 | 5.59E-49 | -1.69E-46 |
MS.gene053318 | MS.gene51866 | 0.838642 | 2.55E-57 | -1.69E-46 |
MS.gene053626 | MS.gene51866 | 0.811361 | 7.28E-51 | -1.69E-46 |
MS.gene053824 | MS.gene51866 | 0.817562 | 3.09E-52 | -1.69E-46 |
MS.gene054408 | MS.gene51866 | 0.81202 | 5.23E-51 | -1.69E-46 |
MS.gene054927 | MS.gene51866 | 0.815845 | 7.50E-52 | -1.69E-46 |
MS.gene055539 | MS.gene51866 | 0.831753 | 1.40E-55 | -1.69E-46 |
MS.gene055577 | MS.gene51866 | 0.812302 | 4.54E-51 | -1.69E-46 |
MS.gene055741 | MS.gene51866 | 0.835276 | 1.84E-56 | -1.69E-46 |
MS.gene055744 | MS.gene51866 | 0.828781 | 7.43E-55 | -1.69E-46 |
MS.gene056040 | MS.gene51866 | 0.800357 | 1.50E-48 | -1.69E-46 |
MS.gene056166 | MS.gene51866 | 0.805421 | 1.35E-49 | -1.69E-46 |
MS.gene056877 | MS.gene51866 | 0.804714 | 1.89E-49 | -1.69E-46 |
MS.gene057124 | MS.gene51866 | 0.80373 | 3.03E-49 | -1.69E-46 |
MS.gene058090 | MS.gene51866 | 0.822555 | 2.22E-53 | -1.69E-46 |
MS.gene058120 | MS.gene51866 | 0.819631 | 1.05E-52 | -1.69E-46 |
MS.gene058130 | MS.gene51866 | 0.802032 | 6.80E-49 | -1.69E-46 |
MS.gene05837 | MS.gene51866 | 0.824258 | 8.90E-54 | -1.69E-46 |
MS.gene058700 | MS.gene51866 | 0.851068 | 1.13E-60 | -1.69E-46 |
MS.gene058838 | MS.gene51866 | 0.802421 | 5.65E-49 | -1.69E-46 |
MS.gene058948 | MS.gene51866 | 0.855708 | 5.26E-62 | -1.69E-46 |
MS.gene059023 | MS.gene51866 | 0.814771 | 1.30E-51 | -1.69E-46 |
MS.gene059303 | MS.gene51866 | 0.80291 | 4.48E-49 | -1.69E-46 |
MS.gene059667 | MS.gene51866 | 0.804842 | 1.78E-49 | -1.69E-46 |
MS.gene060372 | MS.gene51866 | 0.801475 | 8.85E-49 | -1.69E-46 |
MS.gene06092 | MS.gene51866 | 0.810781 | 9.72E-51 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene51866.t1 | MTR_7g085670 | 97.491 | 279 | 7 | 0 | 3 | 281 | 50 | 328 | 0.0 | 563 |
MS.gene51866.t1 | MTR_7g085670 | 97.740 | 177 | 4 | 0 | 3 | 179 | 50 | 226 | 8.87e-126 | 358 |
MS.gene51866.t1 | MTR_4g007990 | 28.571 | 245 | 149 | 12 | 36 | 268 | 135 | 365 | 1.92e-17 | 81.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene51866.t1 | AT3G03890 | 76.357 | 258 | 61 | 0 | 20 | 277 | 62 | 319 | 3.59e-148 | 418 |
MS.gene51866.t1 | AT3G03890 | 75.000 | 244 | 61 | 0 | 20 | 263 | 62 | 305 | 6.54e-138 | 391 |
MS.gene51866.t1 | AT1G51560 | 27.626 | 257 | 136 | 12 | 36 | 268 | 141 | 371 | 1.10e-17 | 82.4 |
MS.gene51866.t1 | AT3G21140 | 29.084 | 251 | 140 | 11 | 36 | 268 | 137 | 367 | 1.50e-17 | 82.0 |
Find 66 sgRNAs with CRISPR-Local
Find 210 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GACACAAATCGTACAACTTT+TGG | 0.244472 | 7.4:+21748296 | None:intergenic |
TCCTAAATGTTCAGTGCTTT+TGG | 0.253580 | 7.4:-21748742 | MS.gene51866:CDS |
GGCCATACGAGCTGCATATT+TGG | 0.255255 | 7.4:-21748471 | MS.gene51866:CDS |
CTTTGCTGACATAATAGATT+TGG | 0.270171 | 7.4:-21747258 | MS.gene51866:CDS |
CGAGACATCCCAATGCGTTT+TGG | 0.271589 | 7.4:-21748448 | MS.gene51866:CDS |
GCCAAAAGCACTGAACATTT+AGG | 0.293730 | 7.4:+21748741 | None:intergenic |
GGTGTTGCCACAGCTTTGTT+AGG | 0.347039 | 7.4:-21748272 | MS.gene51866:CDS |
CGGTTATCCATCAGGATCTA+TGG | 0.347934 | 7.4:-21749167 | MS.gene51866:CDS |
ATGAATCAGGTTGTTTCCTC+TGG | 0.356396 | 7.4:-21750275 | MS.gene51866:intron |
TCAATTAATTCAAGCTCATC+AGG | 0.370693 | 7.4:-21750222 | MS.gene51866:intron |
GGCTTGGAAAACTGAGCAAT+GGG | 0.383757 | 7.4:+21747551 | None:intergenic |
GCCACAGCTTTGTTAGGATC+AGG | 0.395641 | 7.4:-21748266 | MS.gene51866:CDS |
TCCTGAAGATAGGACTGATT+TGG | 0.404816 | 7.4:-21748712 | MS.gene51866:CDS |
CAACTTGAGGCTTGGCAGCT+TGG | 0.406436 | 7.4:+21746754 | None:intergenic |
ACAGTTCGAATTTCTTCAAC+TGG | 0.411436 | 7.4:+21749784 | None:intergenic |
TCTTCGACTTCAGAGTTTAC+CGG | 0.413103 | 7.4:-21747602 | MS.gene51866:intron |
TCGTCTAGGTTTCAATGTTA+AGG | 0.415391 | 7.4:-21747234 | MS.gene51866:intron |
AAGTCGCTCACTGCTAATAT+AGG | 0.415949 | 7.4:+21749115 | None:intergenic |
TGCTGATTTGTACTCATCTC+CGG | 0.430709 | 7.4:+21747583 | None:intergenic |
TCTTACTTTCTATCTTCTGC+AGG | 0.436757 | 7.4:+21746909 | None:intergenic |
TGGCTAGAGATCCTGAAGAT+AGG | 0.437357 | 7.4:-21748722 | MS.gene51866:CDS |
GCAGCACTGGACCTCAGTTC+CGG | 0.448145 | 7.4:-21747378 | MS.gene51866:intron |
AGGTACCTGAGTAGTGGATT+GGG | 0.448889 | 7.4:+21750481 | None:intergenic |
TTATATTCAGGTACCTGAAA+AGG | 0.458927 | 7.4:-21748501 | MS.gene51866:intron |
CTGTACTTTGCAGGACTTAG+CGG | 0.469481 | 7.4:-21748769 | MS.gene51866:intron |
AAGTATGACGGTTATCCATC+AGG | 0.473161 | 7.4:-21749175 | MS.gene51866:CDS |
CTCGTAATGAAGGTTGACTT+TGG | 0.474484 | 7.4:-21748344 | MS.gene51866:intron |
GATTAATACCGCTACTGGCT+TGG | 0.477699 | 7.4:+21747535 | None:intergenic |
AAAGTTACCCAAAACGCATT+GGG | 0.484421 | 7.4:+21748440 | None:intergenic |
TTTCTATCTTCTGCAGGTCG+AGG | 0.484803 | 7.4:+21746915 | None:intergenic |
GAGGTACCTGAGTAGTGGAT+TGG | 0.486138 | 7.4:+21750480 | None:intergenic |
CGCCAAATATGCAGCTCGTA+TGG | 0.487531 | 7.4:+21748469 | None:intergenic |
TTAGAGATTAATACCGCTAC+TGG | 0.492574 | 7.4:+21747530 | None:intergenic |
CTAAAGCGATTGTGCAGCAC+TGG | 0.493445 | 7.4:-21747391 | MS.gene51866:CDS |
TTGGTTCAATGCGTACAAAT+CGG | 0.494738 | 7.4:+21748315 | None:intergenic |
CGACTTGGCAGTTCATTCAA+AGG | 0.496656 | 7.4:-21749098 | MS.gene51866:intron |
TTCTATCTTCTGCAGGTCGA+GGG | 0.497692 | 7.4:+21746916 | None:intergenic |
GACTTTGCATGTGATGCAAA+TGG | 0.502893 | 7.4:-21749142 | MS.gene51866:CDS |
ACCAAATCAGTCCTATCTTC+AGG | 0.507307 | 7.4:+21748711 | None:intergenic |
AAAAGTTACCCAAAACGCAT+TGG | 0.512742 | 7.4:+21748439 | None:intergenic |
AAAGTTGTACGATTTGTGTC+AGG | 0.512754 | 7.4:-21748293 | MS.gene51866:CDS |
AACAGAAACCTTCGAGAATG+TGG | 0.529578 | 7.4:+21749732 | None:intergenic |
GTATCAATCAACTTGAGGCT+TGG | 0.543974 | 7.4:+21746746 | None:intergenic |
TCTTCTGCAGGTCGAGGGAA+AGG | 0.546658 | 7.4:+21746921 | None:intergenic |
TAGATGTATCAATCAACTTG+AGG | 0.555292 | 7.4:+21746741 | None:intergenic |
ATAATAGATTTGGATCGTCT+AGG | 0.558053 | 7.4:-21747248 | MS.gene51866:CDS |
GGTACCTGAAAAGGATAAAG+AGG | 0.559008 | 7.4:-21748492 | MS.gene51866:CDS |
TGGCTTGGAAAACTGAGCAA+TGG | 0.563411 | 7.4:+21747550 | None:intergenic |
TTCTTCCCAATCCACTACTC+AGG | 0.566362 | 7.4:-21750486 | MS.gene51866:intron |
GTTCGAATTTCTTCAACTGG+TGG | 0.572856 | 7.4:+21749787 | None:intergenic |
GACGCTCTCCACATTCTCGA+AGG | 0.577675 | 7.4:-21749740 | MS.gene51866:intron |
TCCCACGTAGACTACGATCA+AGG | 0.587187 | 7.4:+21749761 | None:intergenic |
AAATAGAGGTACCTGAGTAG+TGG | 0.589705 | 7.4:+21750475 | None:intergenic |
CAGGTCGAGGGAAAGGCACA+CGG | 0.592459 | 7.4:+21746928 | None:intergenic |
TATATTAGCAGTGAGCGACT+TGG | 0.593728 | 7.4:-21749113 | MS.gene51866:CDS |
AAGTCAACCATAGATCCTGA+TGG | 0.598237 | 7.4:+21749160 | None:intergenic |
ACAGCTTTGTTAGGATCAGG+AGG | 0.602593 | 7.4:-21748263 | MS.gene51866:intron |
GTCCTTGATCGTAGTCTACG+TGG | 0.607414 | 7.4:-21749763 | MS.gene51866:CDS |
TTTGACACGCAGAAGTATGA+CGG | 0.611261 | 7.4:-21749187 | MS.gene51866:intron |
TCCTTGATCGTAGTCTACGT+GGG | 0.641535 | 7.4:-21749762 | MS.gene51866:CDS |
AAGGGGACATACCGGAACTG+AGG | 0.652484 | 7.4:+21747367 | None:intergenic |
TCCTGATCCTAACAAAGCTG+TGG | 0.652822 | 7.4:+21748265 | None:intergenic |
TCGCACATGAACAAAGATCA+CGG | 0.675086 | 7.4:-21747422 | MS.gene51866:CDS |
GATTTGGTGATCACTATCCA+CGG | 0.676849 | 7.4:-21748696 | MS.gene51866:CDS |
GCTTGGAAAACTGAGCAATG+GGG | 0.731088 | 7.4:+21747552 | None:intergenic |
TTACAAAGATAGCGTCACCG+TGG | 0.762471 | 7.4:+21748679 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATTTAAACTGTAAATTATTA+TGG | - | chr7.4:21747658-21747677 | MS.gene51866:intron | 10.0% |
!! | ATTTGATAAATAATAGTAAA+AGG | + | chr7.4:21748653-21748672 | None:intergenic | 10.0% |
!! | CTATTGAATAATAATTAATT+GGG | - | chr7.4:21746832-21746851 | MS.gene51866:intron | 10.0% |
!! | TATATTAAAAGAGAAAATTT+GGG | + | chr7.4:21749786-21749805 | None:intergenic | 10.0% |
!! | TTATATTAAAAGAGAAAATT+TGG | + | chr7.4:21749787-21749806 | None:intergenic | 10.0% |
!! | AAGAAATAATGTATAACTAA+TGG | + | chr7.4:21748615-21748634 | None:intergenic | 15.0% |
!! | AATATTATCATGTAAACATA+GGG | - | chr7.4:21749130-21749149 | MS.gene51866:CDS | 15.0% |
!! | ACTATTATTTATCAAATGAT+TGG | - | chr7.4:21748656-21748675 | MS.gene51866:intron | 15.0% |
!! | CCAATTAATTATTATTCAAT+AGG | + | chr7.4:21746834-21746853 | None:intergenic | 15.0% |
!! | CCTATTGAATAATAATTAAT+TGG | - | chr7.4:21746831-21746850 | MS.gene51866:intron | 15.0% |
!! | TGCATAAAAAAGAATATATA+AGG | - | chr7.4:21749446-21749465 | MS.gene51866:intron | 15.0% |
!!! | TATTTATTGCTTTTCTTTTA+GGG | - | chr7.4:21750441-21750460 | MS.gene51866:intron | 15.0% |
!!! | TGAAATTTTGTTTTAGTAAT+TGG | - | chr7.4:21747996-21748015 | MS.gene51866:intron | 15.0% |
!!! | TTTTAGTTAAGTTTTGATTT+TGG | + | chr7.4:21749281-21749300 | None:intergenic | 15.0% |
!!! | TTTTTAACAATAAACTTTGA+GGG | + | chr7.4:21748203-21748222 | None:intergenic | 15.0% |
!!! | TTTTTTAACAATAAACTTTG+AGG | + | chr7.4:21748204-21748223 | None:intergenic | 15.0% |
!! | AAAAAAAAACAGCATATTGT+AGG | + | chr7.4:21750393-21750412 | None:intergenic | 20.0% |
!! | AATAGGTTCAAAGAAAAAAA+GGG | + | chr7.4:21746817-21746836 | None:intergenic | 20.0% |
!! | AATTGAATGTGTATAATTTC+AGG | - | chr7.4:21747383-21747402 | MS.gene51866:CDS | 20.0% |
!! | AATTTGTGAACTTGTATAAA+TGG | - | chr7.4:21748280-21748299 | MS.gene51866:CDS | 20.0% |
!! | ATAATAGAATCATTATACGA+AGG | - | chr7.4:21748695-21748714 | MS.gene51866:CDS | 20.0% |
!! | ATACACATGAAATTAACTTA+TGG | + | chr7.4:21749577-21749596 | None:intergenic | 20.0% |
!! | CAATATTATCATGTAAACAT+AGG | - | chr7.4:21749129-21749148 | MS.gene51866:CDS | 20.0% |
!! | TAATAGAATCATTATACGAA+GGG | - | chr7.4:21748696-21748715 | MS.gene51866:CDS | 20.0% |
!! | TAATTAATTAATGTGATTCG+TGG | - | chr7.4:21746945-21746964 | MS.gene51866:CDS | 20.0% |
!! | TTTAAAAATCACCTACAAAT+TGG | - | chr7.4:21750126-21750145 | MS.gene51866:intron | 20.0% |
!!! | AAGATTGATTTATGTTAATG+GGG | - | chr7.4:21747406-21747425 | MS.gene51866:CDS | 20.0% |
!!! | ATAATCATTTTTTTTTAGGC+TGG | - | chr7.4:21750271-21750290 | MS.gene51866:intron | 20.0% |
!!! | ATTTTATTCCACTCATAAAA+AGG | + | chr7.4:21749108-21749127 | None:intergenic | 20.0% |
!!! | CTATTTATTGCTTTTCTTTT+AGG | - | chr7.4:21750440-21750459 | MS.gene51866:intron | 20.0% |
!!! | GAAGATTGATTTATGTTAAT+GGG | - | chr7.4:21747405-21747424 | MS.gene51866:CDS | 20.0% |
!!! | TTTTATTCCACTCATAAAAA+GGG | + | chr7.4:21749107-21749126 | None:intergenic | 20.0% |
! | AAATAAAAGACAAGATGAGA+AGG | + | chr7.4:21748040-21748059 | None:intergenic | 25.0% |
! | AAATATCTTTCCATTACTTC+AGG | - | chr7.4:21749528-21749547 | MS.gene51866:intron | 25.0% |
! | AATAGAATCATTATACGAAG+GGG | - | chr7.4:21748697-21748716 | MS.gene51866:CDS | 25.0% |
! | ACTTCTACAAAAATCAATGA+AGG | + | chr7.4:21747180-21747199 | None:intergenic | 25.0% |
! | ATAGTCCTGAAATTATATTC+AGG | - | chr7.4:21748733-21748752 | MS.gene51866:CDS | 25.0% |
! | ATGTAAACTTCACATAAGAT+GGG | + | chr7.4:21747589-21747608 | None:intergenic | 25.0% |
! | ATTAAAAGAGAAAATTTGGG+TGG | + | chr7.4:21749783-21749802 | None:intergenic | 25.0% |
! | ATTAACTTATGGTTCATAGA+TGG | + | chr7.4:21749566-21749585 | None:intergenic | 25.0% |
! | ATTATAACTGTTAAGATGAC+CGG | + | chr7.4:21748391-21748410 | None:intergenic | 25.0% |
! | CAATAGGTTCAAAGAAAAAA+AGG | + | chr7.4:21746818-21746837 | None:intergenic | 25.0% |
! | CAGTGAAGATTTCAATTTAA+TGG | + | chr7.4:21747951-21747970 | None:intergenic | 25.0% |
! | GATTTCTTTATCCAATTTGT+AGG | + | chr7.4:21750140-21750159 | None:intergenic | 25.0% |
! | GTATATAGTATGATCAAGAA+AGG | - | chr7.4:21749914-21749933 | MS.gene51866:intron | 25.0% |
! | TAAGTAAAAATACTGCCTAA+AGG | + | chr7.4:21750094-21750113 | None:intergenic | 25.0% |
! | TCATACTATATACTGTACAA+CGG | + | chr7.4:21749907-21749926 | None:intergenic | 25.0% |
!! | AAGATTAGATTTGACTTCAT+CGG | - | chr7.4:21748244-21748263 | MS.gene51866:intron | 25.0% |
!! | GGAAGATTGATTTATGTTAA+TGG | - | chr7.4:21747404-21747423 | MS.gene51866:CDS | 25.0% |
!! | TTTAGTTGTTGTTGTTCATA+GGG | + | chr7.4:21747879-21747898 | None:intergenic | 25.0% |
!! | TTTTCAGAAAAGTTCATGTT+AGG | + | chr7.4:21749237-21749256 | None:intergenic | 25.0% |
!!! | GCAATCTTTTAATTTGTTTG+TGG | + | chr7.4:21748434-21748453 | None:intergenic | 25.0% |
!!! | TTTATTTTTAACATCACCAG+AGG | + | chr7.4:21746990-21747009 | None:intergenic | 25.0% |
!!! | TTTTAGTTGTTGTTGTTCAT+AGG | + | chr7.4:21747880-21747899 | None:intergenic | 25.0% |
AAAAATACTGCCTAAAGGTA+TGG | + | chr7.4:21750089-21750108 | None:intergenic | 30.0% | |
AAATGAACTACTCGTAATGA+AGG | - | chr7.4:21748892-21748911 | MS.gene51866:intron | 30.0% | |
AAGGGAAATGTTTCATACTA+TGG | + | chr7.4:21749089-21749108 | None:intergenic | 30.0% | |
AGAAAAGTTCATGTTAGGAA+AGG | + | chr7.4:21749232-21749251 | None:intergenic | 30.0% | |
AGCTATACAAATCAGTGTAA+GGG | + | chr7.4:21747547-21747566 | None:intergenic | 30.0% | |
AGGTACCTGAATATAATTTC+AGG | + | chr7.4:21748741-21748760 | None:intergenic | 30.0% | |
AGTTTATTTGCCATACCTTT+AGG | - | chr7.4:21750076-21750095 | MS.gene51866:intron | 30.0% | |
ATAATAGATTTGGATCGTCT+AGG | - | chr7.4:21749998-21750017 | MS.gene51866:intron | 30.0% | |
ATCAAGAAATCAACAGCTTT+AGG | + | chr7.4:21749323-21749342 | None:intergenic | 30.0% | |
CATACTATATACTGTACAAC+GGG | + | chr7.4:21749906-21749925 | None:intergenic | 30.0% | |
CATGTAAACTTCACATAAGA+TGG | + | chr7.4:21747590-21747609 | None:intergenic | 30.0% | |
CTAAATTGACAGAAGCTAAT+GGG | + | chr7.4:21747219-21747238 | None:intergenic | 30.0% | |
CTTTGAACATTACAAATGCT+GGG | - | chr7.4:21747753-21747772 | MS.gene51866:intron | 30.0% | |
CTTTGCTGACATAATAGATT+TGG | - | chr7.4:21749988-21750007 | MS.gene51866:intron | 30.0% | |
TCAAGAAATCAACAGCTTTA+GGG | + | chr7.4:21749322-21749341 | None:intergenic | 30.0% | |
TCAATTAATTCAAGCTCATC+AGG | - | chr7.4:21747024-21747043 | MS.gene51866:intron | 30.0% | |
TCTTTGAACATTACAAATGC+TGG | - | chr7.4:21747752-21747771 | MS.gene51866:intron | 30.0% | |
TGTAAACTTCACATAAGATG+GGG | + | chr7.4:21747588-21747607 | None:intergenic | 30.0% | |
TTATAACTGTTAAGATGACC+GGG | + | chr7.4:21748390-21748409 | None:intergenic | 30.0% | |
TTATATTCAGGTACCTGAAA+AGG | - | chr7.4:21748745-21748764 | MS.gene51866:CDS | 30.0% | |
TTATGTTAATGGGGTTATTG+TGG | - | chr7.4:21747415-21747434 | MS.gene51866:CDS | 30.0% | |
! | AACATTTCCCTTTTTATGAG+TGG | - | chr7.4:21749097-21749116 | MS.gene51866:intron | 30.0% |
! | CAATTTTAAACTACCAGCAA+GGG | + | chr7.4:21747368-21747387 | None:intergenic | 30.0% |
! | CATTATAGTTGATACCTTGA+AGG | - | chr7.4:21749160-21749179 | MS.gene51866:CDS | 30.0% |
! | TATTGTTTTCTGTACTTTGC+AGG | - | chr7.4:21748468-21748487 | MS.gene51866:CDS | 30.0% |
! | TCAATTTTAAACTACCAGCA+AGG | + | chr7.4:21747369-21747388 | None:intergenic | 30.0% |
! | TGTAAATTATTATGGTGCCA+TGG | - | chr7.4:21747666-21747685 | MS.gene51866:intron | 30.0% |
!! | GTTAATTTGCTGTTAATGCT+GGG | - | chr7.4:21749031-21749050 | MS.gene51866:intron | 30.0% |
!! | TGAAAACTGTACTTGTTATC+TGG | - | chr7.4:21749410-21749429 | MS.gene51866:intron | 30.0% |
!!! | TGGGGATATTGAAGTTTTTT+TGG | - | chr7.4:21747797-21747816 | MS.gene51866:intron | 30.0% |
!!! | TTTTTTTAGGCTGGTTATCA+GGG | - | chr7.4:21750280-21750299 | MS.gene51866:intron | 30.0% |
!!! | TTTTTTTTAGGCTGGTTATC+AGG | - | chr7.4:21750279-21750298 | MS.gene51866:intron | 30.0% |
AAAAGTTACCCAAAACGCAT+TGG | + | chr7.4:21748810-21748829 | None:intergenic | 35.0% | |
AAAGTTACCCAAAACGCATT+GGG | + | chr7.4:21748809-21748828 | None:intergenic | 35.0% | |
AAAGTTGTACGATTTGTGTC+AGG | - | chr7.4:21748953-21748972 | MS.gene51866:intron | 35.0% | |
AATATGGCTGTTAACTTTCC+TGG | - | chr7.4:21747693-21747712 | MS.gene51866:intron | 35.0% | |
ACAGTTCGAATTTCTTCAAC+TGG | + | chr7.4:21747465-21747484 | None:intergenic | 35.0% | |
AGAGAAGAGTGAAGAAATAG+AGG | + | chr7.4:21746788-21746807 | None:intergenic | 35.0% | |
ATACAAATCAGTGTAAGGGT+AGG | + | chr7.4:21747543-21747562 | None:intergenic | 35.0% | |
ATTAACCAACAAGAGTAGTG+AGG | + | chr7.4:21749017-21749036 | None:intergenic | 35.0% | |
CAGAGAGGTGAATTACAAAA+TGG | + | chr7.4:21747059-21747078 | None:intergenic | 35.0% | |
CAGCTATACAAATCAGTGTA+AGG | + | chr7.4:21747548-21747567 | None:intergenic | 35.0% | |
CATGCAGTATATGATCAGAA+AGG | + | chr7.4:21747978-21747997 | None:intergenic | 35.0% | |
CCTAAATTGACAGAAGCTAA+TGG | + | chr7.4:21747220-21747239 | None:intergenic | 35.0% | |
TAAAAGACAAGATGAGAAGG+AGG | + | chr7.4:21748037-21748056 | None:intergenic | 35.0% | |
TCGTCTAGGTTTCAATGTTA+AGG | - | chr7.4:21750012-21750031 | MS.gene51866:intron | 35.0% | |
TCTTACTTTCTATCTTCTGC+AGG | + | chr7.4:21750340-21750359 | None:intergenic | 35.0% | |
TGATTCGTGGTTTATGAATC+AGG | - | chr7.4:21746958-21746977 | MS.gene51866:CDS | 35.0% | |
TGGGATTGATCAAATAAGAG+AGG | - | chr7.4:21747772-21747791 | MS.gene51866:intron | 35.0% | |
TGTTAATGCTGGGATATGTT+TGG | - | chr7.4:21749041-21749060 | MS.gene51866:intron | 35.0% | |
TTAGAGATTAATACCGCTAC+TGG | + | chr7.4:21749719-21749738 | None:intergenic | 35.0% | |
TTCACATAAGATGGGGAAAA+AGG | + | chr7.4:21747581-21747600 | None:intergenic | 35.0% | |
TTGATCAAATAAGAGAGGCA+TGG | - | chr7.4:21747777-21747796 | MS.gene51866:intron | 35.0% | |
TTGGTTCAATGCGTACAAAT+CGG | + | chr7.4:21748934-21748953 | None:intergenic | 35.0% | |
! | AAAACAAACTCTAGCCTTCA+AGG | + | chr7.4:21749177-21749196 | None:intergenic | 35.0% |
! | CATTTTGTAATTCACCTCTC+TGG | - | chr7.4:21747057-21747076 | MS.gene51866:intron | 35.0% |
! | CCATTAGCTTCTGTCAATTT+AGG | - | chr7.4:21747217-21747236 | MS.gene51866:intron | 35.0% |
! | GACACAAATCGTACAACTTT+TGG | + | chr7.4:21748953-21748972 | None:intergenic | 35.0% |
! | GATTTGACTTCATCGGAAAT+AGG | - | chr7.4:21748251-21748270 | MS.gene51866:intron | 35.0% |
! | TCCTAAATGTTCAGTGCTTT+TGG | - | chr7.4:21748504-21748523 | MS.gene51866:intron | 35.0% |
! | TGATCAAATAAGAGAGGCAT+GGG | - | chr7.4:21747778-21747797 | MS.gene51866:intron | 35.0% |
! | TTGTTGTTGTTCATAGGGAA+GGG | + | chr7.4:21747874-21747893 | None:intergenic | 35.0% |
!! | AAATTATTATGGTGCCATGG+TGG | - | chr7.4:21747669-21747688 | MS.gene51866:intron | 35.0% |
!! | ACTTATCTAGAAGCACTTCT+GGG | - | chr7.4:21747084-21747103 | MS.gene51866:intron | 35.0% |
!! | GGTTAATTTGCTGTTAATGC+TGG | - | chr7.4:21749030-21749049 | MS.gene51866:intron | 35.0% |
!! | TATTGACTTAGGCTTGTCAA+AGG | - | chr7.4:21748318-21748337 | MS.gene51866:CDS | 35.0% |
AACAGAAACCTTCGAGAATG+TGG | + | chr7.4:21747517-21747536 | None:intergenic | 40.0% | |
AAGTATGACGGTTATCCATC+AGG | - | chr7.4:21748071-21748090 | MS.gene51866:intron | 40.0% | |
AAGTCAACCATAGATCCTGA+TGG | + | chr7.4:21748089-21748108 | None:intergenic | 40.0% | |
AAGTCGCTCACTGCTAATAT+AGG | + | chr7.4:21748134-21748153 | None:intergenic | 40.0% | |
AATGCTGGGATATGTTTGGA+AGG | - | chr7.4:21749045-21749064 | MS.gene51866:intron | 40.0% | |
ACCAAATCAGTCCTATCTTC+AGG | + | chr7.4:21748538-21748557 | None:intergenic | 40.0% | |
ATATACTGTACAACGGGCAA+GGG | + | chr7.4:21749900-21749919 | None:intergenic | 40.0% | |
ATGCTGGGATATGTTTGGAA+GGG | - | chr7.4:21749046-21749065 | MS.gene51866:intron | 40.0% | |
CCTAAGTCAATACTGTGTGA+TGG | + | chr7.4:21748310-21748329 | None:intergenic | 40.0% | |
CTTGCTCATTCCTGAAGTAA+TGG | + | chr7.4:21749541-21749560 | None:intergenic | 40.0% | |
GACTTTGCATGTGATGCAAA+TGG | - | chr7.4:21748104-21748123 | MS.gene51866:intron | 40.0% | |
GGTACCTGAAAAGGATAAAG+AGG | - | chr7.4:21748754-21748773 | MS.gene51866:CDS | 40.0% | |
GTTAACCTCACTACTCTTGT+TGG | - | chr7.4:21749009-21749028 | MS.gene51866:intron | 40.0% | |
GTTCGAATTTCTTCAACTGG+TGG | + | chr7.4:21747462-21747481 | None:intergenic | 40.0% | |
TAGAAGCTAAAATCCCTTGC+TGG | - | chr7.4:21747352-21747371 | MS.gene51866:intron | 40.0% | |
TATATACTGTACAACGGGCA+AGG | + | chr7.4:21749901-21749920 | None:intergenic | 40.0% | |
TATATTAGCAGTGAGCGACT+TGG | - | chr7.4:21748133-21748152 | MS.gene51866:intron | 40.0% | |
TCCTGAAGATAGGACTGATT+TGG | - | chr7.4:21748534-21748553 | MS.gene51866:intron | 40.0% | |
TCGCACATGAACAAAGATCA+CGG | - | chr7.4:21749824-21749843 | MS.gene51866:intron | 40.0% | |
TCTTCGACTTCAGAGTTTAC+CGG | - | chr7.4:21749644-21749663 | MS.gene51866:intron | 40.0% | |
TGACTGAATTGATCATCTGC+AGG | - | chr7.4:21749961-21749980 | MS.gene51866:intron | 40.0% | |
! | AGTCAATACTGTGTGATGGA+TGG | + | chr7.4:21748306-21748325 | None:intergenic | 40.0% |
! | ATGAATCAGGTTGTTTCCTC+TGG | - | chr7.4:21746971-21746990 | MS.gene51866:intron | 40.0% |
! | ATGGCCTCTTTATCCTTTTC+AGG | + | chr7.4:21748761-21748780 | None:intergenic | 40.0% |
! | CTCGTAATGAAGGTTGACTT+TGG | - | chr7.4:21748902-21748921 | MS.gene51866:intron | 40.0% |
! | GATCAAATAAGAGAGGCATG+GGG | - | chr7.4:21747779-21747798 | MS.gene51866:intron | 40.0% |
! | GTTGTTGTTGTTCATAGGGA+AGG | + | chr7.4:21747875-21747894 | None:intergenic | 40.0% |
! | TGACTTTTGTTCATACCCCA+AGG | - | chr7.4:21747837-21747856 | MS.gene51866:intron | 40.0% |
! | TTTGACACGCAGAAGTATGA+CGG | - | chr7.4:21748059-21748078 | MS.gene51866:intron | 40.0% |
!! | AAATAGAGGTACCTGAGTAG+TGG | + | chr7.4:21746774-21746793 | None:intergenic | 40.0% |
!! | AAGGGTGTTTACAGTTCCTT+GGG | + | chr7.4:21747856-21747875 | None:intergenic | 40.0% |
!! | AGCTGTTGATTTCTTGATGC+TGG | - | chr7.4:21749325-21749344 | MS.gene51866:intron | 40.0% |
!! | CACTTATCTAGAAGCACTTC+TGG | - | chr7.4:21747083-21747102 | MS.gene51866:intron | 40.0% |
!! | CCATCACACAGTATTGACTT+AGG | - | chr7.4:21748307-21748326 | MS.gene51866:CDS | 40.0% |
!! | GATTTGGTGATCACTATCCA+CGG | - | chr7.4:21748550-21748569 | MS.gene51866:intron | 40.0% |
!! | GCCAAAAGCACTGAACATTT+AGG | + | chr7.4:21748508-21748527 | None:intergenic | 40.0% |
!! | TGCTGATTTGTACTCATCTC+CGG | + | chr7.4:21749666-21749685 | None:intergenic | 40.0% |
!!! | GAAGGCTAGAGTTTGTTTTG+CGG | - | chr7.4:21749178-21749197 | MS.gene51866:CDS | 40.0% |
CGGTTATCCATCAGGATCTA+TGG | - | chr7.4:21748079-21748098 | MS.gene51866:intron | 45.0% | |
CTAGATAAGTGCTTCCAGAG+AGG | + | chr7.4:21747074-21747093 | None:intergenic | 45.0% | |
CTGAATTGATCATCTGCAGG+TGG | - | chr7.4:21749964-21749983 | MS.gene51866:intron | 45.0% | |
CTGTACTTTGCAGGACTTAG+CGG | - | chr7.4:21748477-21748496 | MS.gene51866:CDS | 45.0% | |
GCTTGGAAAACTGAGCAATG+GGG | + | chr7.4:21749697-21749716 | None:intergenic | 45.0% | |
GGCTTGGAAAACTGAGCAAT+GGG | + | chr7.4:21749698-21749717 | None:intergenic | 45.0% | |
GTTAATGGGGTTATTGTGGC+AGG | - | chr7.4:21747419-21747438 | MS.gene51866:CDS | 45.0% | |
TAACAGCCATATTGCCACCA+TGG | + | chr7.4:21747686-21747705 | None:intergenic | 45.0% | |
TATACTGTACAACGGGCAAG+GGG | + | chr7.4:21749899-21749918 | None:intergenic | 45.0% | |
TCCTGATCCTAACAAAGCTG+TGG | + | chr7.4:21748984-21749003 | None:intergenic | 45.0% | |
TCCTTGATCGTAGTCTACGT+GGG | - | chr7.4:21747484-21747503 | MS.gene51866:intron | 45.0% | |
TGGCTAGAGATCCTGAAGAT+AGG | - | chr7.4:21748524-21748543 | MS.gene51866:intron | 45.0% | |
TTACAAAGATAGCGTCACCG+TGG | + | chr7.4:21748570-21748589 | None:intergenic | 45.0% | |
TTCTATCTTCTGCAGGTCGA+GGG | + | chr7.4:21750333-21750352 | None:intergenic | 45.0% | |
TTCTTCCCAATCCACTACTC+AGG | - | chr7.4:21746760-21746779 | MS.gene51866:CDS | 45.0% | |
TTGATTTCTTGATGCTGGCG+TGG | - | chr7.4:21749330-21749349 | MS.gene51866:intron | 45.0% | |
TTTCTATCTTCTGCAGGTCG+AGG | + | chr7.4:21750334-21750353 | None:intergenic | 45.0% | |
! | AGGGTGTTTACAGTTCCTTG+GGG | + | chr7.4:21747855-21747874 | None:intergenic | 45.0% |
! | CGACTTGGCAGTTCATTCAA+AGG | - | chr7.4:21748148-21748167 | MS.gene51866:intron | 45.0% |
! | GAGACATCCCAATGCGTTTT+GGG | - | chr7.4:21748799-21748818 | MS.gene51866:intron | 45.0% |
! | GATTAATACCGCTACTGGCT+TGG | + | chr7.4:21749714-21749733 | None:intergenic | 45.0% |
! | TCAGTTTTCCAAGCCAGTAG+CGG | - | chr7.4:21749703-21749722 | MS.gene51866:intron | 45.0% |
! | TGGCTTGGAAAACTGAGCAA+TGG | + | chr7.4:21749699-21749718 | None:intergenic | 45.0% |
!! | ACAGCTTTGTTAGGATCAGG+AGG | - | chr7.4:21748983-21749002 | MS.gene51866:intron | 45.0% |
!! | AGGTACCTGAGTAGTGGATT+GGG | + | chr7.4:21746768-21746787 | None:intergenic | 45.0% |
!! | GAAGGGTGTTTACAGTTCCT+TGG | + | chr7.4:21747857-21747876 | None:intergenic | 45.0% |
!!! | TAAAATAATCATTTTTTTTT+AGG | - | chr7.4:21750267-21750286 | MS.gene51866:CDS | 5.0% |
!!! | TCAATTAAAATATTTTTTAT+TGG | - | chr7.4:21749496-21749515 | MS.gene51866:intron | 5.0% |
AGTGAAAGCTACTCCAGACC+AGG | + | chr7.4:21747714-21747733 | None:intergenic | 50.0% | |
CGCCAAATATGCAGCTCGTA+TGG | + | chr7.4:21748780-21748799 | None:intergenic | 50.0% | |
CTAAAGCGATTGTGCAGCAC+TGG | - | chr7.4:21749855-21749874 | MS.gene51866:intron | 50.0% | |
CTGTGTGGATGCTGTAAAGC+AGG | - | chr7.4:21749201-21749220 | MS.gene51866:intron | 50.0% | |
GGCCATACGAGCTGCATATT+TGG | - | chr7.4:21748775-21748794 | MS.gene51866:intron | 50.0% | |
GGCTGTTAACTTTCCTGGTC+TGG | - | chr7.4:21747698-21747717 | MS.gene51866:intron | 50.0% | |
GTCCTTGATCGTAGTCTACG+TGG | - | chr7.4:21747483-21747502 | MS.gene51866:intron | 50.0% | |
TCATGTCTTCAACCTGCTCC+CGG | - | chr7.4:21748369-21748388 | MS.gene51866:intron | 50.0% | |
TCCCACGTAGACTACGATCA+AGG | + | chr7.4:21747488-21747507 | None:intergenic | 50.0% | |
! | CGAGACATCCCAATGCGTTT+TGG | - | chr7.4:21748798-21748817 | MS.gene51866:intron | 50.0% |
! | GGTCTGGAGTAGCTTTCACT+AGG | - | chr7.4:21747714-21747733 | MS.gene51866:intron | 50.0% |
!! | ATGGTGCCATGGTGGCAATA+TGG | - | chr7.4:21747677-21747696 | MS.gene51866:intron | 50.0% |
!! | GAGGTACCTGAGTAGTGGAT+TGG | + | chr7.4:21746769-21746788 | None:intergenic | 50.0% |
!! | GCCACAGCTTTGTTAGGATC+AGG | - | chr7.4:21748980-21748999 | MS.gene51866:intron | 50.0% |
!! | GGTGTTGCCACAGCTTTGTT+AGG | - | chr7.4:21748974-21748993 | MS.gene51866:intron | 50.0% |
!!! | GAGTTTGTTTTGCGGCTGTG+TGG | - | chr7.4:21749186-21749205 | MS.gene51866:intron | 50.0% |
AAGGGGACATACCGGAACTG+AGG | + | chr7.4:21749882-21749901 | None:intergenic | 55.0% | |
CAACTTGAGGCTTGGCAGCT+TGG | + | chr7.4:21750495-21750514 | None:intergenic | 55.0% | |
CTGTTAAGATGACCGGGAGC+AGG | + | chr7.4:21748384-21748403 | None:intergenic | 55.0% | |
GACGCTCTCCACATTCTCGA+AGG | - | chr7.4:21747506-21747525 | MS.gene51866:intron | 55.0% | |
TCTTCTGCAGGTCGAGGGAA+AGG | + | chr7.4:21750328-21750347 | None:intergenic | 55.0% | |
CAACGGGCAAGGGGACATAC+CGG | + | chr7.4:21749890-21749909 | None:intergenic | 60.0% | |
! | CAGGTCGAGGGAAAGGCACA+CGG | + | chr7.4:21750321-21750340 | None:intergenic | 60.0% |
! | GCAGCACTGGACCTCAGTTC+CGG | - | chr7.4:21749868-21749887 | MS.gene51866:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.4 | gene | 21746749 | 21750519 | 21746749 | ID=MS.gene51866 |
chr7.4 | mRNA | 21746749 | 21750519 | 21746749 | ID=MS.gene51866.t1;Parent=MS.gene51866 |
chr7.4 | exon | 21750487 | 21750519 | 21750487 | ID=MS.gene51866.t1.exon1;Parent=MS.gene51866.t1 |
chr7.4 | CDS | 21750487 | 21750519 | 21750487 | ID=cds.MS.gene51866.t1;Parent=MS.gene51866.t1 |
chr7.4 | exon | 21750223 | 21750288 | 21750223 | ID=MS.gene51866.t1.exon2;Parent=MS.gene51866.t1 |
chr7.4 | CDS | 21750223 | 21750288 | 21750223 | ID=cds.MS.gene51866.t1;Parent=MS.gene51866.t1 |
chr7.4 | exon | 21749741 | 21749827 | 21749741 | ID=MS.gene51866.t1.exon3;Parent=MS.gene51866.t1 |
chr7.4 | CDS | 21749741 | 21749827 | 21749741 | ID=cds.MS.gene51866.t1;Parent=MS.gene51866.t1 |
chr7.4 | exon | 21749099 | 21749197 | 21749099 | ID=MS.gene51866.t1.exon4;Parent=MS.gene51866.t1 |
chr7.4 | CDS | 21749099 | 21749197 | 21749099 | ID=cds.MS.gene51866.t1;Parent=MS.gene51866.t1 |
chr7.4 | exon | 21748683 | 21748778 | 21748683 | ID=MS.gene51866.t1.exon5;Parent=MS.gene51866.t1 |
chr7.4 | CDS | 21748683 | 21748778 | 21748683 | ID=cds.MS.gene51866.t1;Parent=MS.gene51866.t1 |
chr7.4 | exon | 21748448 | 21748513 | 21748448 | ID=MS.gene51866.t1.exon6;Parent=MS.gene51866.t1 |
chr7.4 | CDS | 21748448 | 21748513 | 21748448 | ID=cds.MS.gene51866.t1;Parent=MS.gene51866.t1 |
chr7.4 | exon | 21748264 | 21748354 | 21748264 | ID=MS.gene51866.t1.exon7;Parent=MS.gene51866.t1 |
chr7.4 | CDS | 21748264 | 21748354 | 21748264 | ID=cds.MS.gene51866.t1;Parent=MS.gene51866.t1 |
chr7.4 | exon | 21747544 | 21747611 | 21747544 | ID=MS.gene51866.t1.exon8;Parent=MS.gene51866.t1 |
chr7.4 | CDS | 21747544 | 21747611 | 21747544 | ID=cds.MS.gene51866.t1;Parent=MS.gene51866.t1 |
chr7.4 | exon | 21747379 | 21747444 | 21747379 | ID=MS.gene51866.t1.exon9;Parent=MS.gene51866.t1 |
chr7.4 | CDS | 21747379 | 21747444 | 21747379 | ID=cds.MS.gene51866.t1;Parent=MS.gene51866.t1 |
chr7.4 | exon | 21747235 | 21747285 | 21747235 | ID=MS.gene51866.t1.exon10;Parent=MS.gene51866.t1 |
chr7.4 | CDS | 21747235 | 21747285 | 21747235 | ID=cds.MS.gene51866.t1;Parent=MS.gene51866.t1 |
chr7.4 | exon | 21746915 | 21746979 | 21746915 | ID=MS.gene51866.t1.exon11;Parent=MS.gene51866.t1 |
chr7.4 | CDS | 21746915 | 21746979 | 21746915 | ID=cds.MS.gene51866.t1;Parent=MS.gene51866.t1 |
chr7.4 | exon | 21746749 | 21746806 | 21746749 | ID=MS.gene51866.t1.exon12;Parent=MS.gene51866.t1 |
chr7.4 | CDS | 21746749 | 21746806 | 21746749 | ID=cds.MS.gene51866.t1;Parent=MS.gene51866.t1 |
Gene Sequence |
Protein sequence |